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SLiM on DIet

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					   SLiM on DIet: Finding Short Linear Motifs on Domain Interaction
                          Interfaces in PDB

                                Supplementary File 2



Overview
In this supplementary file, we list all of the Gapped PSSM corresponding to the 452
distinct SLiMs predicted by SLiMDIet. As mentioned in the manuscript, the SLiMs are
selected from 1592 domain-SLiM interface clusters that satisfied the non-homology and
coverage constraints.

Among these clusters that are generated, we group those with at least 70% overlap with
another cluster together. For each group, we choose the cluster in the group which
produce a SLiM that is most similar to a known literature SLiM (when there is a
reference literature SLiM available) or the one whose SLiM yields the best
hypergeometric p-value (computed using the PPI data) as the representative cluster.

The entries are sorted alphabetically based on their cluster IDs. Each entry corresponds to
one domain interface cluster. Interfaces are named as follows:

<PDB ID> _ <chain ID of domain face><chain ID of partner face> _ <domain
sequence number in the domain chain>.

For example, 2c7m_BA_0 is an interface in the PDB structure 2c7m, where the domain
face is inside chain B 1st PFAM domain (corresponding to the domain sequence number 0)
and the partner face is inside chain A.


Definition of the entries

Each entry starts with a header with an arbitrary numbering of the Gapped PSSMs
followed by a list of related values:

===============================
SLIM 1
===============================

       ID           14-3-3.clust.0.2.1
       Center             2b05_EK_0
       AvSimToCtr 0.637
       AvRMSDToCtr 0.437 A
       Size         27
       NumDistinct 7
       FracDDI            0
       FracPeptides       0.857142857142857
       FracIntra    0
       Species                HOMO SAPIENS (4), OVIS ARIES (1)
       Conservation           0.8

ID refers to the ID of the current Gapped PSSM entry.
Center is the center of the cluster that generates this Gapped PSSM.
AvSimToCtr denotes the average S-score similarity (as defined in our method section
2.4) between the center and the rest of the cluster member.
AvRMSDToCtr is the average Root Mean Squared Distance between the center and the
rest of the cluster member.
Size is the total size of the cluster.
NumDistinct is the number of non-homologous interfaces in the cluster.
FracDDI is the fraction of within the non-homologous interfaces which are domain-
domain interfaces.
FracPeptide is the fraction of within the non-homologous interfaces which are domain-
short peptide interfaces.
FracIntra is the fraction of within the non-homologous interfaces which are intra chain
domain interfaces.
Species lists the different organism’s protein in which the SLiM occurs (along with the
frequency of occurrence). The frequency is derived solely from the non-homologous
interfaces.
Conservation is the ratio between the most frequent organism in which the SLiM occurs
against the total number of occurrence. It is possible that a SLiM’s occurrence was found
in a synthetic peptide or a peptide whose source organism is not labeled. We did not take
such occurrence into the total occurrence count.

In the current results, we found that 326 out of the 452 SLiMs are derived from protein
sequences that are dominated by one source species (at least half of the partner faces
originate from a single species). The ratio stays fairly consistent in different subsets of
the data (for the literature validated SLiMs: 30 out of 40; domain-peptide validated
SLiMs: 45 out of 54; and for the p-value validated SLiMs: 43 out of 61). However, we
should not be quick to conclude that the SLiMs are indeed species-specific. This is
because the PDB database is currently biased towards certain model organisms’ proteins
(e.g. Human and Mouse). Hence, the dominance of certain species for the SLiMs could
be due to the limited and biased species coverage of PDB.


After the header information, we have a listing of the member interfaces (including the
homologous/redundant ones), domain-short peptide interfaces and domain-domain
interfaces. The domain-domain interfaces are grouped by the partner domains.


Members
      1ib1_AE_0     1ib1_CG_0    1ib1_BF_0    1ib1_DH_0    1qja_AR_0   1qja_BQ_0
      2b05_AG_0     2b05_FL_0    2b05_CI_0    2b05_DJ_0    2b05_BH_0   2c63_AP_0
      2c63_DS_0     2c63_BQ_0    2c63_CR_0    2npm_AX_0    2npm_BY_0   2v7d_AP_0
      2v7d_BQ_0     2v7d_CR_0    2v7d_DS_0    2wh0_AQ_0    2wh0_BQ_0   2wh0_DR_0
      2wh0_CR_0     3cu8_AP_0    3cu8_BQ_0
Peptides
      2b05-K 1qja-R 2v7d-P 2wh0-Q 2wh0-R 3cu8-P

PartnerDomains

The multiple alignments of the interfaces in the cluster are provided next:

Dist Members Intf     Alignment
      2b05_EK_0       A     I         S      L       P
      1ib1_AE_0       R               T      L       P
      1qja_AR_0             H         S      L       P
      2v7d_AP_0       S     A         T      T       T
      2wh0_BQ_0       A     L         S      F
      2wh0_CR_0       S     K         S      A
      3cu8_AP_0       S     T         S      T       P

Dist Members ResidueID Alignment
      2b05_EK_0   503   504   505            506     507
      1ib1_AE_0   29          31             32      33
      1qja_AR_0         6     7              8       9
      2v7d_AP_0   756   757   758            759     760
      2wh0_BQ_0   366   367   368            369
      2wh0_CR_0   344   345   346            347
      3cu8_AP_0   257   258   259            260     261

Alignment Occupancy           0.857 0.857 1          1       0.714
Gap in betw Columns           0     0     0          0

Dist Members Intf Alignment lists the aligned residues of the interfaces while
Dist Members ResidueID Alignment shows the PDB residue ID of the aligned residues.
An empty position denotes that no residue of the interface is aligned to the current
position of the cluster center.
Alignment Occupancy shows the fraction of aligned residues within each alignment
column. Only those columns with occupancy more than 50% will be considered.
Gap in betw Columns shows the minimum and maximum gaps between alignment
columns with occupancy greater than or equal to 50%.

       SLIM   RegEx        [SAR][AHTKIL][ST][LTAF][PT]
       SLIM   Coverage           0.857142857142857
       SLIM   PSSM Match Cutoff 17.6190061455743
       SLIM   I=181997 Im=9213 Id=178 Idm=11
       SLIM   PSSM p-value 0.0992611049194893

Next, the entries describe the Gapped PSSM extracted from the alignment.
SLIM RegEx is the regular expression representation of the Gapped PSSM. It includes
all amino acids that have positive scores in each position.
SLIM Coverage is the fraction of the non-homologous interface whose at least half of its
partner face contact residues in covered by the SLiM.
SLIM PSSM Match Cutoff is the minimum Gapped PSSM score for a position in a
protein sequence to be defined as an instance/occurrence of the Gapped PSSM.
The next line contains the following variables
        I is the size of non-homolgous high throughput PPI data used to compute the p-
        value of the Gapped PSSM.
        Im is the number of occurrence of the Gapped PSSM in I.
        Id is the number of PPI containing the domain of this Gapped PSSM.
        Idm is the number of PPI containing the domain and occurrence of this Gapped
        PSSM.
SLIM PSSM p-value is the hypergeometric p-value of the Gapped PSSM based on the (I,
Im, Id, Idm) above. The explanation of these statistics can be found in the Supplementary
File 1 section 3 and 4.

Finally, we give the detailed listing of the amino acid scores in each position in the
Gapped PSSM along with the gap size between every two consecutive positions:


PSSM Listing
Pos 0 S(3.187) R(3.066) A(2.822) K(0.463) N(0.345) T(0.279) Q(-0.08)
G(-0.30) E(-0.39) D(-0.72) C(-0.79) H(-1.08) M(-1.15) P(-1.26) L(-1.70)
I(-1.77) Y(-2.15) V(-2.26) F(-2.26) W(-3.15)
Gap (0)
Pos 1 H(6.054) K(3.066) L(2.192) I(2.190) T(2.101) A(2.083) V(1.200)
M(0.482) R(0.285) Y(0.197) S(0.010) D(-0.15) Q(-0.28) E(-0.29) N(-0.29)
G(-0.55) P(-0.64) F(-0.95) C(-1.15) W(-2.70)
Gap (0)
Pos 2 S(3.663) T(2.747) C(-4) P(-4) A(-4) G(-4) N(-4) D(-4) E(-4) Q(-4)
H(-4) R(-4) K(-4) M(-4) I(-4) L(-4) V(-4) F(-4) Y(-4) W(-4)
Gap (0)
Pos 3 F(4.062) L(3.162) T(2.755) V(2.165) A(2.089) M(1.243) I(1.224)
Y(1.126) S(0.216) G(-0.06) P(-0.15) D(-0.20) W(-0.76) C(-0.85) Q(-0.90)
K(-0.90) H(-0.97) N(-1.00) E(-1.00) R(-1.50)
Gap (0)
Pos 4 P(6.441) T(2.235) S(-0.51) D(-0.51) G(-0.76) N(-1.04) E(-1.04)
Q(-1.04) K(-1.04) A(-1.33) H(-1.51) R(-2.04) M(-2.04) V(-2.33) C(-2.51)
I(-3.04) L(-3.04) Y(-3.04) F(-3.51) W(-4.04)
//
Full Listing of SLiMs
We provide the full listing of the gapped PSSMs of the 452 SLiMs detected by our algorithm as follows.

===============================
 SLIM 1
===============================
ID           14-3-3.clust.0.2.1
Center             2b05_EK_0
AvSimToCtr 0.637
AvRMSDToCtr 0.437 A
Size         27
NumDistinct 7
FracDDI            0
FracPeptides       0.857142857142857
FracIntra    0
Species            HOMO SAPIENS (4), OVIS ARIES (1)
Conservation       0.8

Members
      1ib1_AE_0 1ib1_CG_0 1ib1_BF_0 1ib1_DH_0 1qja_AR_0 1qja_BQ_0 2b05_AG_0 2b05_FL_0 2b05_CI_0 2b05_DJ_0
      2b05_BH_0 2c63_AP_0 2c63_DS_0 2c63_BQ_0 2c63_CR_0 2npm_AX_0 2npm_BY_0 2v7d_AP_0 2v7d_BQ_0 2v7d_CR_0
      2v7d_DS_0 2wh0_AQ_0 2wh0_BQ_0 2wh0_DR_0 2wh0_CR_0 3cu8_AP_0 3cu8_BQ_0

Peptides
      2b05-K 1qja-R 2v7d-P 2wh0-Q 2wh0-R 3cu8-P

PartnerDomains

Dist Members Intf    Alignment
      2b05_EK_0      A     I        S      L       P
      1ib1_AE_0      R              T      L       P
      1qja_AR_0            H        S      L       P
      2v7d_AP_0      S     A        T      T       T
      2wh0_BQ_0      A     L        S      F
      2wh0_CR_0      S     K        S      A
      3cu8_AP_0      S     T        S      T       P

Dist Members ResidueID Alignment
      2b05_EK_0   503   504   505          506     507
      1ib1_AE_0   29          31           32      33
      1qja_AR_0         6     7            8       9
      2v7d_AP_0   756   757   758          759     760
        2wh0_BQ_0   366   367   368   369
        2wh0_CR_0   344   345   346   347
        3cu8_AP_0   257   258   259   260   261

Alignment Occupancy       0.857 0.857 1     1     0.714
Gap in betw Columns       0     0     0     0

SLIM   RegEx        [SAR][AHTKIL][ST][LTAF][PT]
SLIM   Coverage           0.857142857142857
SLIM   PSSM Match Cutoff 17.6190061455743
SLIM   I=181997 Im=9213 Id=178 Idm=11
SLIM   PSSM p-value 0.0992611049194893

PSSM Listing
Pos 0 S(3.187) R(3.066) A(2.822) K(0.463) N(0.345) T(0.279) Q(-0.08) G(-0.30)   E(-0.39) D(-0.72) C(-0.79) H(-1.08)
M(-1.15) P(-1.26) L(-1.70) I(-1.77) Y(-2.15) V(-2.26) F(-2.26) W(-3.15)
Gap (0)
Pos 1 H(6.054) K(3.066) L(2.192) I(2.190) T(2.101) A(2.083) V(1.200) M(0.482)   R(0.285) Y(0.197) S(0.010) D(-0.15)
Q(-0.28) E(-0.29) N(-0.29) G(-0.55) P(-0.64) F(-0.95) C(-1.15) W(-2.70)
Gap (0)
Pos 2 S(3.663) T(2.747) C(-4) P(-4) A(-4) G(-4) N(-4) D(-4) E(-4) Q(-4) H(-4)   R(-4) K(-4) M(-4) I(-4) L(-4) V(-4)
F(-4) Y(-4) W(-4)
Gap (0)
Pos 3 F(4.062) L(3.162) T(2.755) V(2.165) A(2.089) M(1.243) I(1.224) Y(1.126)   S(0.216) G(-0.06) P(-0.15) D(-0.20)
W(-0.76) C(-0.85) Q(-0.90) K(-0.90) H(-0.97) N(-1.00) E(-1.00) R(-1.50)
Gap (0)
Pos 4 P(6.441) T(2.235) S(-0.51) D(-0.51) G(-0.76) N(-1.04) E(-1.04) Q(-1.04)   K(-1.04) A(-1.33) H(-1.51) R(-2.04)
M(-2.04) V(-2.33) C(-2.51) I(-3.04) L(-3.04) Y(-3.04) F(-3.51) W(-4.04)
//

===============================
 SLIM 2
===============================
ID           3Beta_HSD.clust.0.15.0
Center             1orr_AC_2
AvSimToCtr 0.405
AvRMSDToCtr 2.575 A
Size         11
NumDistinct 7
FracDDI            1
FracPeptides       0
FracIntra    0
Species            THERMUS THERMOPHILUS (2), SALMONELLA TYPHI (1)
Conservation       0.666666666666667
Members
      1orr_BD_2 1orr_CA_2 1orr_DB_2 2p5u_AD_2 2p5u_CB_2 2p5u_BC_2 2p5u_DA_2 2vrc_AB_3 2vrc_CD_3 2vrc_BA_3
      2vrc_DC_3

Peptides

PartnerDomains
      3Beta_HSD (1orr_AC_2,2p5u_AD_2,2p5u_CB_2,2vrc_AB_3,2vrc_CD_3,2vrc_DC_3)
      adh_short (2p5u_AD_2,2p5u_CB_2,2vrc_AB_3,2vrc_CD_3,2vrc_BA_3,2vrc_DC_3)
      NmrA (2vrc_AB_3,2vrc_CD_3,2vrc_DC_3)
      Epimerase (1orr_AC_2,2p5u_AD_2,2p5u_CB_2)

Dist Members Intf Alignment
      1orr_AC_2   K     S     I     P     C     D     F     V     G     L       E     R     E     S     T     Q     L
      D     F     H     S     P     C     S     A     Q     Y     D     Y       R     I     F     E
      2p5u_AD_2         S     V     P     V     D     F     L     L     L       E     R                       P
                        S     P     A     S     A     H     Y     V     Y       Q     S     Y
      2p5u_CB_2   K     S     V     P     V     D     F     L     L     L       E     R                       P
                        S     P     A     S     A     H     Y     V     Y       Q     S     Y
      2vrc_AB_3         D     N     T     L           I     V     A     N       V
                        P     H     V           A     Y     A     R     T                   T
      2vrc_CD_3         D     N     T     L     I     V     A     N     V       K
      E                 P     H     V           A     Y     A     R     T                   T
      2vrc_BA_3         D     N     T     L           I     V     A     N
            H                 V     L     A     Y     A     R     T                         T
      2vrc_DC_3         D     N     T     L     I     V     A     N     V       K
                        H     V     L           A     Y     A     R     T             T     N

Dist Members ResidueID Alignment
      1orr_AC_2   62    89    90    93    94    96    97    101   102   105     109   112   155   156   157   158
      159   160   161   162   163   164   167   168   171   174   175   178     179   181   182   183   300
      2p5u_AD_2         82    83    86    87    89    90    94    95    98      102   105                     136
                        141   142   145   146   149   152   153   156   157     159   160   161
      2p5u_CB_2   55    82    83    86    87    89    90    94    95    98      102   105                     136
                        141   142   145   146   149   152   153   156   157     159   160   161
      2vrc_AB_3         79    80    81    82          84    85    88    89      91
                        116   119   120         123   126   127   129   130                 131
      2vrc_CD_3         79    80    81    82    84    85    88    89    91      92
      111               116   119   120         123   126   127   129   130                 131
      2vrc_BA_3         79    80    81    82          84    85    88    89
            119               120   122   123   126   127   129   130                       131
      2vrc_DC_3         79    80    81    82    84    85    88    89    91      92
                        119   120   122         123   126   127   129   130           131   132
Alignment Occupancy       0.285   1     1     1   1     0.714 1     1     1     1     0.857 0.428 0.142 0.142 0.142
      0.428 0.142 0.285   0.285   0.142 0.857 1   1     0.571 1     1     1     1     0.857 0.428 0.571 1     0.142
Gap in betw Columns       0       0,2   0     1   0     0,3   0,2   0,2   0,3   23,53 0,2   0,2   0     2     0,2
      0,1   0,2   0       0,2     0

SLIM   RegEx        [SPH].{0,2}[PHV].{0,2}[ALVC][SA]..[AY].{0,2}[YHAQ].{0,1}[AYR].{0,2}[RVTD][TY].{0,2}[STI][TYFN]
SLIM   Coverage           0.571428571428571
SLIM   PSSM Match Cutoff 37.5666370312015
SLIM   I=181997 Im=5742 Id=11 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 H(6.054) P(5.747) S(3.159) T(0.734) N(0.505) A(0.254) Y(0.120) D(-0.08) E(-0.39) Q(-0.39) K(-0.53) G(-0.72)
R(-1.08) M(-1.53) C(-1.72) V(-2.15) F(-2.15) I(-2.53) L(-2.53) W(-3.08)
Gap (0,2)
Pos 1 H(6.747) P(6.152) V(2.753) I(1.753) Y(0.805) T(0.398) N(-0.05) D(-0.05) M(-0.13) L(-0.20) A(-0.72) E(-0.72)
Q(-0.72) R(-1.02) S(-1.19) K(-1.19) F(-1.52) C(-1.96) G(-2.19) W(-2.80)
Gap (0,2)
Pos 2 C(7.054) V(3.064) L(2.805) A(2.780) I(2.080) M(1.113) S(-0.09) F(-0.80) G(-1.16) Y(-1.31) T(-1.44) Q(-1.66)
K(-1.66) P(-1.80) R(-1.80) E(-1.82) N(-1.96) W(-2.44) H(-2.60) D(-2.72)
Gap (0)
Pos 3 S(3.169) A(2.193) T(0.196) N(0.196) G(-0.55) E(-0.73) Q(-0.73) K(-0.73) D(-0.80) C(-1.20) P(-1.55) R(-1.55)
M(-1.55) H(-1.73) I(-2.20) L(-2.20) V(-2.55) F(-2.55) Y(-2.55) W(-3.55)
Gap (2)
Pos 4 Y(5.054) A(3.846) F(1.093) S(0.854) H(0.158) W(0.093) C(-0.13) G(-0.14) Q(-1) M(-1) I(-1) L(-1) T(-1.09) N(-
1.09) E(-1.09) R(-1.09) K(-1.09) P(-1.13) V(-1.78) D(-2.09)
Gap (0,2)
Pos 5 H(6.751) Y(6.157) Q(3.077) F(2.167) A(2.073) W(1.173) E(0.372) N(0.029) D(-0.04) R(-0.24) S(-0.36) K(-0.50)
T(-0.61) M(-0.93) L(-1.41) V(-1.44) I(-1.46) C(-1.50) G(-1.50) P(-1.80)
Gap (0,1)
Pos 6 Y(6.152) A(3.157) R(3.064) F(2.160) H(1.214) W(1.161) S(0.243) K(0.239) Q(-0.35) C(-0.70) G(-0.75) M(-1) N(-
1.02) E(-1.02) L(-1.09) I(-1.13) T(-1.31) V(-1.50) P(-1.61) D(-2.31)
Gap (0,2)
Pos 7 R(4.154) D(4.062) V(2.750) T(2.126) I(1.755) K(1.224) E(0.510) Q(0.398) M(-0.00) N(-0.02) L(-0.15) S(-0.31)
H(-0.44) P(-0.62) A(-0.66) G(-0.66) Y(-1.66) C(-1.68) F(-1.87) W(-3.09)
Gap (0)
Pos 8 Y(6.152) T(3.155) F(2.159) H(1.279) W(1.159) S(0.201) P(0.170) G(0.170) D(0.170) Q(-0.53) N(-0.72) E(-0.72)
K(-0.72) M(-1.15) C(-1.53) A(-1.53) R(-1.53) I(-1.53) L(-1.53) V(-1.53)
Gap (0,2)
Pos 9 S(2.773) T(2.151) I(2.061) L(0.107) N(-0.07) A(-0.12) D(-0.38) G(-0.39) M(-0.60) P(-0.69) V(-0.80) E(-0.83)
Q(-0.83) K(-0.83) H(-1.36) C(-1.55) F(-1.60) R(-1.80) Y(-2.20) W(-3.55)
Gap (0)
Pos 10 Y(5.756) F(4.150) N(4.062) T(3.161) H(0.972) W(0.925) S(0.477) D(0.454) G(0.284) P(0.183) Q(-0.38) E(-0.48)
K(-0.48) M(-0.85) R(-1.06) I(-1.16) L(-1.16) A(-1.44) C(-1.50) V(-1.50)
//
===============================
 SLIM 3
===============================
ID           4HBT.clust.0.25.14
Center             3d6x_CD_1
AvSimToCtr 0.575
AvRMSDToCtr 0.788 A
Size         11
NumDistinct 4
FracDDI            0.75
FracPeptides       0
FracIntra    0
Species            PSEUDOMONAS AERUGINOSA (3)
Conservation       1

Members
      1u1z_AB_1 1u1z_CD_1 1u1z_FE_1 1u1z_BA_1 1u1z_DC_1 1u1z_EF_1 3d6x_AB_1 3d6x_BA_1 3d6x_DC_1 3d6x_FE_1
      3d6x_EF_1

Peptides

PartnerDomains
      4HBT (3d6x_CD_1,1u1z_AB_1,1u1z_FE_1)
      FabA (3d6x_CD_1,1u1z_AB_1,1u1z_FE_1)

Dist Members Intf   Alignment
      3d6x_CD_1     F     H     V   L        L    E    Y    F     T     G     I     D     G     A     K     F    R
      N     P
      1u1z_AB_1     F     H     V   L        I    E    Y          V     G     S     D     K     L     R     F
      Q     P
      1u1z_CD_1     F     H     V   L        I    E               V     G     S     D     K     L     R     F    R
      Q     P
      1u1z_FE_1     F     H     V   L        I    E    Y          V     G     S     D     K     L     R     F    R
      Q     P

Dist Members ResidueID Alignment
      3d6x_CD_1   17    48    58    59       61   62   88   89    90    91    92    93    94    95    96    97
      98    99    100
      1u1z_AB_1   17    49    59    60       62   63   88         90    91    92    93    94    95    96    97
      99    100
      1u1z_CD_1   17    49    59    60       62   63              90    91    92    93    94    95    96    97
      98    99    100
      1u1z_FE_1   17    49    59    60       62   63   88         90    91    92    93    94    95    96    97
      98    99    100
Alignment Occupancy       1     1     1     1     1   1     0.75   0.25   1   1     1     1     1     1     1     1
      0.75 1      1
Gap in betw Columns       30,31 9     0     1     0   21,24 1      0      0   0     0     0     0     0     0     0
      0

SLIM   RegEx        Y.[VT]G[SI]D[KG][LA][RK]FR[QN]P
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 23.177652965697
SLIM   I=181997 Im=4784 Id=16 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Y(6.712) F(2.712) H(1.712) W(1.712) Q(-1.28) M(-1.28) I(-1.28) L(-1.28) V(-1.28) C(-2.28) S(-2.28) T(-2.28)
A(-2.28) N(-2.28) E(-2.28) R(-2.28) K(-2.28) P(-3.28) G(-3.28) D(-3.28)
Gap (1)
Pos 1 V(3.713) I(2.714) T(2.621) M(0.756) L(0.728) A(-0.17) S(-0.24) P(-0.24) G(-0.33) D(-0.33) C(-1) E(-1.04) Q(-
1.04) K(-1.04) F(-1.17) Y(-1.17) N(-1.24) H(-1.24) R(-2.04) W(-3)
Gap (0)
Pos 2 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 3 S(3.713) I(2.621) A(0.756) T(0.728) N(0.718) L(0.667) M(-0.04) V(-0.24) D(-0.27) E(-0.27) Q(-0.27) K(-0.27)
G(-0.28) C(-1) F(-1.04) P(-1.24) H(-1.24) R(-1.24) Y(-1.64) W(-3)
Gap (0)
Pos 4 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (0)
Pos 5 K(4.712) G(4.614) R(1.718) E(0.728) Q(0.728) T(0.357) S(0) N(-0.24) A(-0.64) D(-1) P(-1.17) H(-1.17) M(-1.24)
V(-1.24) Y(-2.17) L(-2.24) W(-2.64) C(-3) F(-3) I(-3.17)
Gap (0)
Pos 6 L(3.714) V(2.714) A(2.633) M(1.728) I(1.728) F(-0.24) S(-0.24) C(-0.64) Y(-1.17) G(-1.33) T(-1.64) Q(-1.64)
R(-1.64) K(-1.64) P(-2.04) N(-2.04) E(-2.04) W(-2.17) H(-2.64) D(-3.04)
Gap (0)
Pos 7 R(4.728) K(3.752) Q(1) E(0.357) N(0) H(-0.17) S(-0.64) T(-0.64) A(-1) M(-1) P(-1.64) D(-1.64) G(-2) L(-2) Y(-
2) C(-3) I(-3) V(-3) F(-3) W(-3)
Gap (0)
Pos 8 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 9 R(4.712) K(1.712) Q(0.712) N(-0.28) E(-0.28) H(-0.28) S(-1.28) T(-1.28) A(-1.28) M(-1.28) P(-2.28) G(-2.28)
D(-2.28) L(-2.28) Y(-2.28) C(-3.28) I(-3.28) V(-3.28) F(-3.28) W(-3.28)
Gap (0)
Pos 10 Q(4.714) N(4.621) E(1.756) R(0.827) K(0.827) S(0.357) D(0.357) T(0) H(-0.17) M(-0.24) G(-1.04) P(-1.17) A(-
1.17) Y(-1.17) L(-2.17) V(-2.17) W(-2.24) C(-3) I(-3) F(-3)
Gap (0)
Pos 11 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3)
F(-4) W(-4)
//

===============================
 SLIM 4
===============================
ID           A2M_comp.clust.0.2.2
Center             3d5s_BD_1
AvSimToCtr 0.648
AvRMSDToCtr 0.456 A
Size         9
NumDistinct 5
FracDDI            0
FracPeptides       0
FracIntra    0
Species            NONE
Conservation       UNDEFINED

Members
      2gox_AB_1 3d5s_AC_1 2gox_CD_1 3d5r_AC_1 3d5r_BD_1 2noj_AB_1 2noj_CD_1 2noj_EF_1 2noj_GH_1

Peptides

PartnerDomains

Dist Members Intf   Alignment
      3d5s_BD_1     K     K     K     H     A     Q     K     N     L     V     F     K     Q
      2gox_AB_1     K     K     K     H     R     Q     K     N     L     V     F     K     Q
      3d5r_AC_1     K     K     K     H     R     Q     K     A     L           F     K     Q
      2noj_AB_1                       H     R     Q     R     N     L     I                 Q
      2noj_GH_1                       H     R     Q     R     N     L     I           K     Q

Dist Members ResidueID Alignment
      3d5s_BD_1   16    17    20      40    41    44    45    48    49    50    52    58    62
      2gox_AB_1   106   107   110     130   131   134   135   138   139   140   142   148   152
      3d5r_AC_1   16    17    20      40    41    44    45    48    49          52    58    62
      2noj_AB_1                       74    75    78    79    82    83    84                96
      2noj_GH_1                       74    75    78    79    82    83    84          92    96

Alignment Occupancy       0.6   0.6   0.6   1     1     1     1     1     1     0.8   0.6   0.8   1
Gap in betw Columns       0     2     19    0     2     0     2     0     0     1     5     3

SLIM RegEx          H[RA]..Q[KR]..[NA]L[IV].F
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 19.6421774872847
SLIM   I=181997 Im=5993 Id=34 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 H(8) Y(2) N(1) D(1) T(0) E(0) Q(0) R(0) S(-1) K(-1) F(-1) P(-2) A(-2) G(-2) M(-2) V(-2) W(-2) C(-3) I(-3) L(-
3)
Gap (0)
Pos 1 R(4.777) A(2.417) K(1.789) Q(0.810) N(-0.13) E(-0.13) S(-0.17) H(-0.18) T(-1) M(-1) G(-1.17) C(-1.42) P(-1.70)
L(-1.70) D(-2) Y(-2) I(-2.17) V(-2.70) F(-2.70) W(-3)
Gap (2)
Pos 2 Q(5) E(2) R(1) K(1) S(0) T(0) N(0) D(0) H(0) M(0) P(-1) A(-1) Y(-1) G(-2) L(-2) V(-2) W(-2) C(-3) I(-3) F(-3)
Gap (0)
Pos 3 K(4.521) R(4.155) Q(1) E(0.708) N(0) S(-0.29) T(-0.29) H(-0.47) A(-1) M(-1) P(-1.29) D(-1.29) G(-2) L(-2) Y(-
2) C(-3) I(-3) V(-3) F(-3) W(-3)
Gap (2)
Pos 4 N(5.777) A(2.400) S(1) D(0.789) G(0) T(-0.13) E(-0.13) Q(-0.13) R(-0.13) K(-0.13) H(-1.13) C(-1.42) P(-1.70)
M(-1.70) Y(-2) I(-2.17) L(-2.17) V(-2.70) F(-2.70) W(-3.70)
Gap (0)
Pos 5 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 6 I(3.396) V(3.132) L(1.396) M(0.776) A(-0.60) F(-0.60) C(-1.22) Y(-1.22) S(-2.22) T(-2.22) P(-2.60) E(-2.60)
Q(-2.60) K(-2.60) N(-3.22) D(-3.22) H(-3.22) R(-3.22) W(-3.22) G(-3.60)
Gap (1)
Pos 7 F(5.489) Y(2.489) W(0.489) M(-0.51) I(-0.51) L(-0.51) H(-1.51) V(-1.51) C(-2.51) S(-2.51) T(-2.51) A(-2.51)
G(-3.51) N(-3.51) D(-3.51) E(-3.51) Q(-3.51) R(-3.51) K(-3.51) P(-4.51)
//

===============================
 SLIM 5
===============================
ID           AAA.clust.0.15.1
Center             3cf0_FE_1
AvSimToCtr 0.529
AvRMSDToCtr 0.936 A
Size         19
NumDistinct 6
FracDDI            0
FracPeptides       0
FracIntra    0
Species            THERMOTOGA MARITIMA (5), MUS MUSCULUS (1)
Conservation       0.833333333333333
Members
      2ce7_BA_1 2cea_BA_1 2ce7_DE_2 2cea_DE_2 2ce7_CB_1 2cea_CB_1 3cf0_AN_1 3cf0_MH_1 3cf0_CB_1 3cf0_KJ_1
      3cf0_HG_1 3cf0_DL_1 3cf0_JI_1 3cf0_BA_1 3cf0_GC_1 3cf0_IF_1 3cf0_LK_1 3cf0_NM_1 3cf0_ED_1

Peptides

PartnerDomains

Dist Members Intf   Alignment
      3cf0_FE_1     R     E     L     Y       K     F     K     F     G     M     T     S     G     G     G     A     D
      R     N       Q     L     T     D       A     R     R     Q
      2ce7_BA_1           E                   K     F     R     I     G
      2cea_BA_1           E           E       K     F     R     I     G           R
      2ce7_DE_2           E           E       K     F     R     I     G     A     R
      2ce7_CB_1     E     E           E       K     F           I           G
      2cea_CB_1     E     E           E       K     F           I     G     A     R

Dist Members ResidueID Alignment
      3cf0_FE_1   487   491   492     495     502   503   505   506   507   508   509   511   593   594   595   597
      598   599   602   603   605     606     609   632   635   638   641
      2ce7_BA_1         175                   185   186   188   189   190
      2cea_BA_1         175           178     185   186   188   189   190         192
      2ce7_DE_2         175           178     185   186   188   189   190   191   192
      2ce7_CB_1   171   175           178     185   186         189         190
      2cea_CB_1   171   175           178     185   186         189   190   191   192

Alignment Occupancy     0.5   1     0.166 0.833 1     1     0.666 1     0.833 0.666 0.666 0.166 0.166 0.166 0.166
      0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166
Gap in betw Columns     3     2,3   6     0     1     0     0     0     0

SLIM   RegEx        KF.[RK][IF]G[AMG][RT]
SLIM   Coverage           0.833333333333333
SLIM   PSSM Match Cutoff 18.5304982635852
SLIM   I=181997 Im=4603 Id=1071 Idm=37
SLIM   PSSM p-value 0.0124112748498377

PSSM Listing
Pos 0 K(5) R(2) E(1) Q(1) S(0) T(0) N(0) P(-1) A(-1) D(-1) H(-1) M(-1) G(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 1 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (1)
Pos 2 R(4.323) K(3.347) Q(0.594) E(-0.04) N(-0.40) H(-0.57) S(-1.04) T(-1.04) A(-1.40) M(-1.40) P(-2.04) D(-2.04)
G(-2.40) L(-2.40) Y(-2.40) C(-3.40) I(-3.40) V(-3.40) F(-3.40) W(-3.40)
Gap (0)
Pos 3 F(4.220) I(3.821) L(1.844) Y(1.295) M(0.888) V(0.844) W(-0.70) C(-1.11)   A(-1.11) S(-2) T(-2) H(-2.27) N(-3)
D(-3) E(-3) Q(-3) R(-3) K(-3) P(-3.11) G(-3.74)
Gap (0)
Pos 4 G(5.817) T(0.817) S(-0.18) A(-0.18) V(-0.18) D(-1.18) P(-2.18) N(-2.18)   E(-2.18) Q(-2.18) H(-2.18) R(-2.18)
K(-2.18) W(-2.18) C(-3.18) M(-3.18) F(-3.18) Y(-3.18) I(-4.18) L(-4.18)
Gap (0)
Pos 5 G(4.213) M(3.213) A(2.913) L(0.305) S(0.125) T(-0.45) I(-0.54) C(-0.90)   Q(-1.16) V(-1.45) F(-1.51) R(-1.57)
K(-1.57) P(-1.78) N(-1.78) E(-1.78) D(-2.16) Y(-2.16) W(-2.29) H(-2.40)
Gap (0)
Pos 6 R(4.307) T(2.228) K(1.350) Q(0.422) N(-0.40) E(-0.40) H(-0.40) S(-0.45)   P(-0.65) G(-0.65) D(-0.65) A(-1.40)
M(-1.40) L(-2.40) Y(-2.40) C(-2.45) I(-3.04) V(-3.04) F(-3.04) W(-3.40)
//

===============================
 SLIM 6
===============================
ID           AAA_2.clust.0.2.3
Center             1hqy_EF_0
AvSimToCtr 0.446
AvRMSDToCtr 0.923 A
Size         13
NumDistinct 4
FracDDI            0.25
FracPeptides       0
FracIntra    0
Species            ESCHERICHIA COLI (3), HAEMOPHILUS INFLUENZAE (1)
Conservation       0.75

Members
      1do0_AB_2 1do0_DE_2 1e94_EF_0 1ht1_EF_0 1ht2_EF_0 1ht1_GI_0 1ht2_GH_0 1g4a_EF_1 1ofh_BC_1 1do0_BC_2
      1do0_EF_2 1do0_CD_2 1do0_FA_2

Peptides

PartnerDomains
      AAA_2 (1hqy_EF_0)

Dist Members Intf   Alignment
      1hqy_EF_0     E     V     G   Y     V     L     N     E         E   E     V    S      R     D     L     E       G
      T     S       M     V     K   P     E
      1ofh_BC_1     E     V               G                                                 R     D     L     E       G
      T     S       M               P     E
      1do0_CD_2                     Y     V                                                             R
                                    P     E
        1do0_FA_2         E     V      G      Y
                                       P      E

Dist Members ResidueID Alignment
      1hqy_EF_0   47    89    90       91     92     233   235     237    238    248    272    273    279    280   282   286
      287   289   291   296   297      298    320    321
      1ofh_BC_1   47    89                    90                                                      280    281   283   287
      288   290   292   297                   321    322
      1do0_CD_2                        91     92                                                                   279
                                       320    321
        1do0_FA_2         88    89     90     91
                                       320    321

Alignment Occupancy       0.5   0.75   0.5    0.75   1      0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.5   0.5   0.75
      0.5   0.5   0.5     0.5   0.5    0.25   0.25   1      1
Gap in betw Columns       41    0      0      0      55,151        0      1      3      0      1      1      4     23    0

SLIM   RegEx        RD.[LR].{3}EG.T.S.{4}M
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 14.7634974778534
SLIM   I=181997 Im=5770 Id=64 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 R(4.306) K(1.306) Q(0.306) N(-0.69) E(-0.69) H(-0.69) S(-1.69) T(-1.69)           A(-1.69) M(-1.69) P(-2.69) G(-2.69)
D(-2.69) L(-2.69) Y(-2.69) C(-3.69) I(-3.69) V(-3.69) F(-3.69) W(-3.69)
Gap (0)
Pos 1 D(5.306) E(1.306) T(0.306) N(0.306) S(-0.69) Q(-0.69) P(-1.69) G(-1.69)           H(-1.69) K(-1.69) A(-2.69) R(-2.69)
C(-3.69) M(-3.69) I(-3.69) V(-3.69) F(-3.69) Y(-3.69) L(-4.69) W(-4.69)
Gap (1)
Pos 2 R(3.615) L(3.308) V(2.308) M(1.331) I(1.310) K(0.649) Q(-0.29) F(-0.66)           A(-1.28) N(-1.29) E(-1.29) H(-1.29)
Y(-1.52) C(-1.62) S(-1.83) T(-1.83) W(-2.52) P(-2.83) G(-3.14) D(-3.14)
Gap (3)
Pos 3 E(4.306) D(1.306) Q(1.306) K(0.306) S(-0.69) T(-0.69) N(-0.69) H(-0.69)           R(-0.69) P(-1.69) A(-1.69) G(-2.69)
M(-2.69) Y(-2.69) I(-3.69) L(-3.69) V(-3.69) F(-3.69) W(-3.69) C(-4.69)
Gap (0)
Pos 4 G(5.306) T(0.306) S(-0.69) A(-0.69) V(-0.69) D(-1.69) P(-2.69) N(-2.69)           E(-2.69) Q(-2.69) H(-2.69) R(-2.69)
K(-2.69) W(-2.69) C(-3.69) M(-3.69) F(-3.69) Y(-3.69) I(-4.69) L(-4.69)
Gap (1)
Pos 5 T(3.306) S(0.306) P(0.306) G(0.306) D(0.306) N(-0.69) E(-0.69) Q(-0.69)           H(-0.69) K(-0.69) C(-1.69) A(-1.69)
R(-1.69) M(-1.69) I(-2.69) L(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
Gap (1)
Pos 6 S(3.306) T(0.306) A(0.306) N(0.306) G(-0.69) D(-0.69) E(-0.69) Q(-0.69)           K(-0.69) C(-1.69) P(-1.69) H(-1.69)
R(-1.69) M(-1.69) I(-2.69) L(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
Gap (4)
Pos 7 M(4.306) L(1.306) I(0.306) Q(-0.69) F(-0.69) C(-1.69) S(-1.69) T(-1.69) A(-1.69) R(-1.69) K(-1.69) Y(-1.69)
W(-1.69) P(-2.69) N(-2.69) E(-2.69) H(-2.69) V(-2.69) G(-3.69) D(-3.69)
//

===============================
 SLIM 7
===============================
ID           AA_kinase.clust.0.15.4
Center             2v5h_DF_0
AvSimToCtr 0.444
AvRMSDToCtr 1.037 A
Size         25
NumDistinct 13
FracDDI            0.230769230769231
FracPeptides       0
FracIntra    0
Species            PSEUDOMONAS AERUGINOSA (9), ARABIDOPSIS THALIANA (2), MYCOBACTERIUM TUBERCULOSIS CDC1551 (1),
SYNECHOCOCCUS ELONGATUS (1)
Conservation       0.692307692307692

Members
      2ap9_AC_0 2ap9_BE_0 2ap9_EB_0 2ap9_CA_0 2ap9_FD_0 2ap9_DF_0 2rd5_AB_0 2rd5_BA_0 2v5h_AC_0 2v5h_BE_0
      2v5h_EB_0 2v5h_FD_0 2v5h_CA_0 2buf_CB_1 2buf_FD_1 2buf_IG_1 2buf_EA_1 2buf_HL_1 2buf_JK_1 2buf_KJ_1
      2buf_AE_1 2buf_LH_1 2buf_BC_1 2buf_DF_1 2buf_GI_1

Peptides

PartnerDomains
      XPG_N (2buf_HL_1,2buf_JK_1,2buf_KJ_1)

Dist Members Intf   Alignment
      2v5h_DF_0     L     S     E   L     P     L     Q     C     V
      2ap9_AC_0     L     A         L           L     K     N     C
      2rd5_AB_0     L     S         L           I     Q
      2rd5_BA_0     L     S         L           I     Q     C     V
      2buf_CB_1           S     E   L           I     R
      2buf_FD_1           S     E   L           I     R     A     V
      2buf_HL_1     L     S     E   L                 R     A     V
      2buf_JK_1     L     S         L           I     R     A     V
      2buf_KJ_1     L     S     E   L           I     R     A     V
      2buf_AE_1           L         L                       A     V
      2buf_LH_1           A                           L     A     V
      2buf_BC_1     V     A         S                       A     V
      2buf_DF_1     V     A     K   S                 L
Dist Members ResidueID Alignment
      2v5h_DF_0   17    18    19      21    22    24    25    59    60
      2ap9_AC_0   18    19            22          25    26    60    61
      2rd5_AB_0   23    24            27          30    31
      2rd5_BA_0   23    24            27          30    31    65    66
      2buf_CB_1         16    17      19          22    23
      2buf_FD_1         16    17      19          22    23    57    58
      2buf_HL_1   15    16    17      19                23    57    58
      2buf_JK_1   15    16            19          22    23    57    58
      2buf_KJ_1   15    16    17      19          22    23    57    58
      2buf_AE_1         15            19                      57    58
      2buf_LH_1         12                              19    57    58
      2buf_BC_1   11    12            16                      57    58
      2buf_DF_1   11    12    13      16                19

Alignment Occupancy       0.692 1     0.461 0.923 0.076 0.615 0.846 0.769 0.769
Gap in betw Columns       0     2,3   2     0     33,37 0

SLIM   RegEx        [LV][SAL].{2,3}[LS]..[IL][RQLK]
SLIM   Coverage           0.692307692307692
SLIM   PSSM Match Cutoff 16.0901918150672
SLIM   I=181997 Im=6138 Id=49 Idm=1
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 L(3.395) V(2.955) I(1.955) M(1.480) F(-0.51) A(-1.04) C(-1.36) Y(-1.36)     S(-2.36) T(-2.36) Q(-2.36) K(-2.36)
R(-2.51) W(-2.51) P(-3.04) E(-3.04) N(-3.36) H(-3.36) G(-4.04) D(-4.04)
Gap (0)
Pos 1 S(3.539) A(2.917) L(1.480) T(0.585) N(0.582) V(0.512) G(-0.07) M(-0.09)     I(-0.26) Q(-0.30) K(-0.30) E(-0.31)
D(-0.41) C(-0.57) R(-1.04) P(-1.06) H(-1.30) F(-1.60) Y(-1.87) W(-2.87)
Gap (2,3)
Pos 2 L(3.738) V(2.738) S(2.140) M(1.747) I(1.741) F(-0.23) A(-0.35) T(-0.64)     N(-0.78) C(-1.08) Y(-1.19) Q(-1.35)
K(-1.35) E(-1.64) G(-1.78) D(-1.78) R(-1.82) W(-2.19) P(-2.35) H(-2.35)
Gap (2)
Pos 3 I(3.270) L(2.468) V(1.468) M(0.871) F(-0.48) C(-1.48) A(-1.48) Y(-1.48)     S(-2.48) T(-2.48) Q(-3.12) R(-3.12)
K(-3.12) W(-3.12) P(-3.48) N(-3.48) E(-3.48) H(-3.48) D(-3.65) G(-4.48)
Gap (0)
Pos 4 R(4.065) Q(3.570) K(2.701) L(2.139) V(1.145) E(0.835) M(0.430) I(0.158)     N(-0.35) H(-0.42) S(-0.75) T(-0.75)
D(-1.15) A(-1.16) Y(-1.58) F(-1.66) P(-1.75) G(-2.33) C(-2.39) W(-2.58)
//

===============================
 SLIM 8
===============================
ID          AA_kinase.clust.0.15.9
Center              2a1f_EA_0
AvSimToCtr 0.496
AvRMSDToCtr 1.126   A
Size         15
NumDistinct 5
FracDDI             1
FracPeptides        0
FracIntra    0
Species             HAEMOPHILUS INFLUENZAE (1), STREPTOCOCCUS PYOGENES (1)
Conservation        0.5

Members
      1z9d_CA_0 2a1f_AC_0 2a1f_BF_0 2a1f_CE_0 2a1f_DB_0 2a1f_FD_0 3ek6_AF_0 3ek6_FD_0 3ek6_DA_0 3ek6_BE_0
      3ek6_EC_0 2va1_AE_0 2va1_CF_0 2va1_ED_0 2va1_BC_0

Peptides

PartnerDomains
      AA_kinase (2a1f_EA_0,1z9d_CA_0,3ek6_AF_0,2va1_AE_0,2va1_CF_0)

Dist Members Intf   Alignment
      2a1f_EA_0     Q     T     Y     N     W     S     E     K
      1z9d_CA_0     P     P     Y     I                       R
      3ek6_AF_0     K     D     F     I     R     R     R     R
      2va1_AE_0     K     E     S     S     A     N           K
      2va1_CF_0     K     E     S     S     A           N     K

Dist Members ResidueID Alignment
      2a1f_EA_0   106   113   114     115   116   117   118   121
      1z9d_CA_0   107   114   115     116                     122
      3ek6_AF_0   106   113   114     115   116   117   118   121
      2va1_AE_0   102   109   110     111   112   113         117
      2va1_CF_0   102   109   110     111   112         113   116

Alignment Occupancy       1     1     1     1     0.8   0.6   0.6   1
Gap in betw Columns       6     0     0     0     0     0     2

SLIM   RegEx        [ETDP][SYF][SIN][AWR][SNR][NRE]..[KR]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 22.7179785201276
SLIM   I=181997 Im=5928 Id=49 Idm=2
SLIM   PSSM p-value 0.263171745201215

PSSM Listing
Pos 0 P(5.394) D(4.433) E(4.112) T(2.518) Q(1.232) K(0.360) S(0.196) N(0.196) H(-0.35) G(-0.35) R(-0.63) A(-1.13)
M(-1.80) Y(-2.29) C(-2.29) V(-2.47) I(-2.70) L(-2.80) F(-2.80) W(-3.29)
Gap (0)
Pos 1 Y(6.092) F(4.486) S(3.087) W(1.258) H(1.155) T(0.155) A(0.155) N(0.140) Q(-0.58) M(-0.70) E(-0.76) K(-0.76)
G(-0.84) D(-0.84) I(-0.91) L(-0.91) V(-1.29) C(-1.47) R(-1.55) P(-1.76)
Gap (0)
Pos 2 N(4.404) S(3.110) I(3.086) L(1.105) T(0.293) A(0.232) M(0.232) V(0.140) D(-0.03) E(-0.47) Q(-0.47) K(-0.47)
G(-0.49) F(-0.76) R(-1.00) C(-1.18) H(-1.42) Y(-1.47) P(-1.63) W(-3.13)
Gap (0)
Pos 3 W(9.390) R(3.395) A(3.087) K(0.491) Y(0.444) S(0.157) Q(-0.33) F(-0.49) G(-0.78) C(-0.82) E(-1.02) N(-1.04)
M(-1.22) H(-1.26) T(-1.46) L(-1.60) P(-1.72) I(-1.78) D(-2.46) V(-2.60)
Gap (0)
Pos 4 N(4.399) R(3.399) S(2.445) K(0.630) Q(-0.05) T(-0.20) D(-0.26) A(-0.43) E(-0.51) G(-0.85) H(-1.05) M(-1.74)
P(-2.05) C(-2.36) Y(-2.51) L(-2.74) I(-3.05) V(-3.05) F(-3.05) W(-3.74)
Gap (0)
Pos 5 N(4.395) E(3.403) R(3.403) Q(0.798) K(0.798) D(0.717) S(-0.20) T(-0.74) H(-0.74) G(-1.36) A(-1.74) P(-2.05)
M(-2.05) Y(-2.51) L(-3.05) I(-3.51) V(-3.51) F(-3.51) C(-3.74) W(-3.74)
Gap (2)
Pos 6 K(4.521) R(4.155) Q(1) E(0.708) N(0) S(-0.29) T(-0.29) H(-0.47) A(-1) M(-1) P(-1.29) D(-1.29) G(-2) L(-2) Y(-
2) C(-3) I(-3) V(-3) F(-3) W(-3)
//

===============================
 SLIM 9
===============================
ID           ABC_tran.clust.0.15.2
Center             2awo_AB_0
AvSimToCtr 0.442
AvRMSDToCtr 1.243 A
Size         12
NumDistinct 4
FracDDI            0
FracPeptides       0
FracIntra    0
Species            ESCHERICHIA COLI (4)
Conservation       1

Members
      1q1b_AB_0 1q1b_CD_0 1q1b_DC_0 1q1b_BA_0 2awn_AB_0 2awn_CD_0 2awo_BA_0 2awo_CD_0 2awo_DC_0 2awn_BA_0
      2awn_DC_0 1q1e_AB_0

Peptides

PartnerDomains
Dist Members Intf   Alignment
      2awo_AB_0     P     S      L      D      A     A      R      H      D     S     K      Q     V     E     Q     L     H
      N     E
      1q1b_AB_0     P     S                                               H     S     K                  E     Q     L     H
      1q1b_CD_0     P     S             D                                 H     S                        E     Q     L
      1q1e_AB_0                                                    N      D                  Q     V     E     Q     L
            E

Dist Members ResidueID Alignment
      2awo_AB_0   37    38    164       165    166   167    169    192    193   236   238    305   306   308   309   310
      317   326   339
      1q1b_AB_0   37    38                                                192   236   238                308   309   310
      317
      1q1b_CD_0   37    38              165                               192   236                      308   309   310
      1q1e_AB_0                                                    163    165                305   306   308   309   310
            339

Alignment Occupancy       0.75   0.75   0.25   0.5   0.25   0.25   0.25   0.5   1     0.75   0.5   0.5   0.5   1     1     1
      0.5   0.25 0.5
Gap in betw Columns       0      126    26     0,1   42,43 1       66     0     1     0      0     6     21

SLIM   RegEx        QV.EQL
SLIM   Coverage            0.5
SLIM   PSSM Match Cutoff 14.6137056388801
SLIM   I=181997 Im=17823 Id=1051 Idm=56
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(4.306) E(1.306) R(0.306) K(0.306) S(-0.69) T(-0.69) N(-0.69) D(-0.69) H(-0.69) M(-0.69) P(-1.69) A(-1.69)
Y(-1.69) G(-2.69) L(-2.69) V(-2.69) W(-2.69) C(-3.69) I(-3.69) F(-3.69)
Gap (0)
Pos 1 V(3.306) I(2.306) M(0.306) L(0.306) A(-0.69) C(-1.69) F(-1.69) Y(-1.69) S(-2.69) T(-2.69) P(-2.69) E(-2.69)
Q(-2.69) K(-2.69) G(-3.69) N(-3.69) D(-3.69) H(-3.69) R(-3.69) W(-3.69)
Gap (1)
Pos 2 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3) L(-3) V(-3) F(-3) W(-3) C(-4)
Gap (0)
Pos 3 Q(5) E(2) R(1) K(1) S(0) T(0) N(0) D(0) H(0) M(0) P(-1) A(-1) Y(-1) G(-2) L(-2) V(-2) W(-2) C(-3) I(-3) F(-3)
Gap (0)
Pos 4 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
//

===============================
 SLIM 10
===============================
ID           ABM.clust.0.3.1
Center             2omo_DG_0
AvSimToCtr 0.569
AvRMSDToCtr 0.708 A
Size         13
NumDistinct 4
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            PSEUDOMONAS AERUGINOSA (1), MYCOBACTERIUM TUBERCULOSIS (1), YERSINIA PESTIS (1), NITROSOMONAS
EUROPAEA (1)
Conservation       0.25

Members
      1x7v_BC_0 1x7v_CB_0 1y0h_AB_0 1y0h_BA_0 2gff_AB_0 2gff_BA_0 2omo_AH_0 2omo_BC_0 2omo_CB_0 2omo_GD_0
      2omo_HA_0 2omo_FE_0 2omo_EF_0

Peptides

PartnerDomains
      ABM (1x7v_BC_0,1y0h_AB_0)

Dist Members Intf   Alignment
      2omo_DG_0     V     I     R      D     L     Y     I     Y    G    G    L     Y     P
      1x7v_BC_0     T     I                        I     Q     L    Y    R    L
      1y0h_AB_0     A     I                  Y     F     V     L    A    P    L     D
      2gff_AB_0     V           R      D     L     Y     V     F    I    G    L           P

Dist Members ResidueID Alignment
      2omo_DG_0   3     5     37       39    41    53    90    91   92   93   94    95    96
      1x7v_BC_0   6     8                          56    92    93   94   95   96
      1y0h_AB_0   7     9                    45    56    93    94   95   96   97    98
      2gff_AB_0   3           37       39    41    53    90    91   92   93   94          96

Alignment Occupancy       1     0.75   0.5   0.5   0.75 1      1    1    1    1     1     0.5   0.5
Gap in betw Columns       1     31     1     1     10,11 35,36 0    0    0    0     0     0

SLIM   RegEx        [VQI][LFY][AIGY][GPR]L[DY]P
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 22.7652510879599
SLIM   I=181997 Im=6198 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(3.615) V(3.332) I(3.165) L(1.175) M(0.827) E(0.656) K(-0.27) R(-0.33) A(-0.37) F(-0.80) Y(-1) S(-1.04) T(-
1.04) C(-1.24) N(-1.24) D(-1.24) H(-1.24) P(-1.75) W(-2.64) G(-2.75)
Gap (0)
Pos 1 Y(5.632) F(4.667) L(3.319) V(2.325) M(1.395) I(1.395) W(0.953) H(0.675) C(-1.37) A(-1.37) Q(-1.75) S(-2) T(-2)
R(-2.17) K(-2.17) N(-2.64) E(-2.64) P(-3.17) G(-3.37) D(-3.37)
Gap (0)
Pos 2 Y(5.614) G(4.616) A(2.640) I(2.627) F(1.671) L(0.710) H(0.656) W(0.645) V(0.053) S(-0.00) M(-0.13) T(-0.17)
C(-0.94) Q(-1.46) N(-1.75) E(-1.75) R(-1.75) K(-1.75) P(-1.89) D(-1.89)
Gap (0)
Pos 3 P(5.614) G(5.307) R(3.616) T(0.756) K(0.696) Q(-0.17) S(-0.37) A(-0.37) V(-0.60) N(-0.89) E(-0.89) H(-1.04)
D(-1.17) M(-1.89) W(-2.46) Y(-2.64) L(-2.89) C(-3) F(-3.17) I(-3.37)
Gap (0)
Pos 4 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 5 Y(5.613) D(4.613) F(1.616) H(0.662) E(0.631) W(0.616) T(-0.33) N(-0.33) Q(-1.07) S(-1.25) K(-2.07) P(-2.25)
G(-2.25) M(-2.25) I(-2.25) V(-2.25) L(-2.33) A(-2.69) R(-2.69) C(-3.07)
Gap (0)
Pos 6 P(6.306) T(0.306) S(-1.69) A(-1.69) N(-1.69) D(-1.69) E(-1.69) Q(-1.69) K(-1.69) G(-2.69) H(-2.69) R(-2.69)
M(-2.69) V(-2.69) C(-3.69) I(-3.69) L(-3.69) Y(-3.69) F(-4.69) W(-4.69)
//

===============================
 SLIM 11
===============================
ID           ACP_syn_III_C.clust.0.15.0
Center             2qny_BA_2
AvSimToCtr 0.480
AvRMSDToCtr 1.502 A
Size         43
NumDistinct 10
FracDDI            0.8
FracPeptides       0
FracIntra    0
Species            PINUS SYLVESTRIS (4), MEDICAGO SATIVA (3), MARCHANTIA POLYMORPHA (1), MYCOBACTERIUM TUBERCULOSIS
(1)
Conservation       0.444444444444444

Members
      1hzp_AB_2   1hzp_BA_2   2qx1_BA_2   1m1m_AB_2   1u6e_AB_2   2ahb_AB_2   2ahb_BA_2   2qnx_BA_2   1u6e_BA_2   1u6s_AB_2
      1u6s_BA_2   2qnz_BA_2   2qo0_AB_2   2qny_AB_2   2qnz_AB_2   2qo0_BA_2   2qx1_AB_2   2qo1_BA_2   1m1m_BA_2   2qnx_AB_2
      2qo1_AB_2   2aj9_AB_2   2aj9_BA_2   1mzj_AB_4   1mzj_BA_4   1u0u_AB_3   1u0u_CD_3   1u0u_FE_3   1u0u_DC_3   1u0u_EF_3
      1u0u_BA_3   1xes_AB_3   1xes_BA_3   1xet_BA_3   1xet_AB_3   1xes_CD_3   1xet_CD_3   1xes_DC_3   1xet_DC_3   1u0w_AB_3
      1u0v_BA_3   1u0w_DC_3   2p0u_AB_3
Peptides

PartnerDomains
      Chal_sti_synt_N (1u0u_AB_3,1u0u_CD_3,1u0u_FE_3,1xet_BA_3,1u0w_AB_3,1u0v_BA_3,1u0w_DC_3,2p0u_AB_3)

Dist Members Intf   Alignment
      2qny_BA_2     T     E     I     A     T      P     P     P     G     G
      1mzj_AB_4                 L     R     T      P     P     V           G
      1u0u_AB_3           F           F     L      P                       R
      1u0u_CD_3           F           F     L      P           F           R
      1u0u_FE_3           F           F     L            P     F           R
      1xet_BA_3     F                 F     L      P           F           R
      1u0w_AB_3     V           V     I     L      P           Y           R
      1u0v_BA_3           S     V     I     L      P                       R
      1u0w_DC_3     V     S     V     I     L      P                       R
      2p0u_AB_3     G     S                 M      P           L

Dist Members ResidueID Alignment
      2qny_BA_2   -9    -8    -7      -6    87     88    89    92    102   105
      1mzj_AB_4               4       5     96     97    98    101         114
      1u0u_AB_3         6             9     140    141                     159
      1u0u_CD_3         6             9     140    141         145         159
      1u0u_FE_3         6             9     140          141   145         159
      1xet_BA_3   6                   9     140    141         145         159
      1u0w_AB_3   2           4       7     137    138         142         156
      1u0v_BA_3         3     4       7     137    138                     156
      1u0w_DC_3   2     3     4       7     137    138                     156
      2p0u_AB_3   21    22                  155    156         160

Alignment Occupancy       0.5   0.7   0.5   0.9    1     0.9   0.3   0.7   0.1   0.9
Gap in betw Columns       0     0     0,2   88,130       0     3     12,13

SLIM   RegEx        [VFTG][SFE][VIL].{0,2}[FIAR]
SLIM   Coverage           0.7
SLIM   PSSM Match Cutoff 15.5345201700485
SLIM   I=181997 Im=6786 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 G(3.704) F(3.699) V(2.404) T(1.753) I(1.418) Y(0.742) M(-0.37) L(-0.41) S(-0.88) A(-1.04) D(-1.12) P(-1.15)
W(-1.20) H(-1.83) E(-1.92) Q(-1.92) K(-1.92) C(-2.04) N(-2.05) R(-2.72)
Gap (0)
Pos 1 F(4.796) S(2.804) E(2.718) Y(1.804) D(0.052) Q(0.052) T(-0.04) N(-0.07) A(-0.11) W(-0.17) K(-0.53) M(-0.85)
I(-1.06) L(-1.06) G(-1.11) H(-1.13) R(-1.49) V(-1.85) C(-1.87) P(-1.87)
Gap (0)
Pos 2 V(2.926) I(2.503) L(1.947) M(0.602) A(-0.98) F(-1.17) C(-1.69) Y(-1.69) S(-2.69) T(-2.69) Q(-2.82) K(-2.82)
P(-2.98) E(-2.98) R(-3.39) W(-3.39) N(-3.69) H(-3.69) D(-3.82) G(-3.98)
Gap (0,2)
Pos 3 F(5.085) I(2.822) R(2.702) Y(2.100) A(1.733) L(0.980) M(0.253) W(0.106) V(-0.01) K(-0.21) S(-0.90) Q(-1.06)
H(-1.28) C(-1.31) N(-1.76) E(-1.76) T(-1.78) G(-1.97) P(-2.62) D(-2.78)
//

===============================
 SLIM 12
===============================
ID           AChE_tetra.clust.0.2.0
Center             1vzj_DC_0
AvSimToCtr 0.389
AvRMSDToCtr 1.253 A
Size         12
NumDistinct 5
FracDDI            0.2
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (5)
Conservation       1

Members
      1vzj_AB_0 1vzj_EF_0 1vzj_BC_0 1vzj_FG_0 1vzj_CD_0 1vzj_GH_0 1vzj_AD_0 1vzj_CB_0 1vzj_GF_0 1vzj_HG_0
      1vzj_BA_0 1vzj_FE_0

Peptides

PartnerDomains
      AChE_tetra (1vzj_FG_0)

Dist Members Intf Alignment
      1vzj_DC_0   T     A      Q      W    E    R     W     Y     H     W     Q     Y
      1vzj_AB_0                W      K    F    W     S           W     K     F
      1vzj_BC_0         E      W      K    F    W                 W     K     F
      1vzj_FG_0   K     F      W      S         W     K     F     Y     S
      1vzj_AD_0                            Y          W     Q           Y

Dist Members ResidueID Alignment
      1vzj_DC_0   2     6     9       10   13   16    17    20    23    24    27    31
      1vzj_AB_0               10      11   14   17    18          24    25    28
      1vzj_BC_0         7     10      11   14   17                24    25    28
      1vzj_FG_0   11    14    17      18        24    25    28    31    32
      1vzj_AD_0                            20         24    27          31
Alignment Occupancy       0.4   0.6   0.8   0.8   0.8   0.8   0.8   0.6   0.8      1     0.6   0.2
Gap in betw Columns       2     0     2     2     0     2     2     0     2

SLIM   RegEx        [FAE]..[WQ][KSW]..[FYE]..[WR][WSK]..[FQY]..[WHY][KSWY]..[FQ]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 26.5575845397599
SLIM   I=181997 Im=5213 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 F(4.391) E(3.393) A(2.399) Y(1.403) Q(0.445) D(0.415) S(-0.26) K(-0.46)      W(-0.57) T(-1.20) H(-1.20) M(-1.20)
N(-1.26) R(-1.26) I(-1.26) L(-1.26) G(-1.43) C(-1.46) P(-1.89) V(-2.20)
Gap (2)
Pos 1 W(10.48) Q(3.393) Y(1.505) F(0.495) E(0.410) R(-0.55) K(-0.55) M(-0.86)      H(-1.26) S(-1.47) T(-1.47) N(-1.55)
D(-1.55) G(-2.22) L(-2.22) A(-2.26) C(-2.39) P(-2.47) V(-2.86) I(-3.22)
Gap (0)
Pos 2 W(9.390) K(4.087) S(2.427) R(1.111) Y(0.444) Q(0.273) E(0.260) T(-0.04)      N(-0.05) A(-0.35) F(-0.52) D(-1.04)
M(-1.22) G(-1.26) H(-1.39) P(-1.49) C(-2.11) L(-2.22) I(-2.86) V(-2.86)
Gap (2)
Pos 3 Y(5.426) F(5.108) E(3.392) W(0.945) H(0.601) Q(0.451) D(0.410) K(-0.52)      M(-0.69) I(-0.72) L(-0.72) S(-1.26)
T(-1.26) N(-1.39) R(-1.39) V(-1.46) A(-1.86) P(-2.39) C(-2.46) G(-2.86)
Gap (2)
Pos 4 W(10.48) R(3.391) Y(1.495) F(0.495) K(0.410) Q(-0.47) M(-1.22) H(-1.26)      E(-1.47) N(-1.55) G(-2.22) L(-2.22)
S(-2.26) T(-2.26) A(-2.26) C(-2.39) I(-3.22) V(-3.22) P(-3.26) D(-3.26)
Gap (0)
Pos 5 W(10.08) K(3.397) S(2.410) Y(1.101) R(0.451) F(0.117) Q(-0.22) E(-0.26)      T(-0.26) N(-0.28) A(-0.45) M(-1.22)
G(-1.26) D(-1.26) H(-1.60) P(-1.86) C(-1.98) L(-2.22) I(-2.86) V(-2.86)
Gap (2)
Pos 6 Y(5.409) F(4.439) Q(3.393) W(0.717) H(0.560) E(0.415) R(-0.54) K(-0.54)      M(-0.74) L(-1.20) I(-1.26) S(-1.36)
T(-1.36) N(-1.43) D(-1.51) V(-1.74) A(-2.05) P(-2.43) C(-2.74) G(-3.05)
Gap (2)
Pos 7 W(10.08) H(6.393) Y(5.410) F(1.644) N(-0.54) D(-0.57) Q(-1.11) M(-1.39)      T(-1.39) E(-1.39) R(-1.39) L(-1.98)
S(-2.11) K(-2.11) V(-2.11) I(-2.26) G(-2.39) C(-2.39) A(-2.60) P(-3.11)
Gap (0)
Pos 8 W(9.390) Y(5.397) K(4.087) S(2.429) F(1.527) R(1.120) H(0.545) Q(0.327)      E(0.280) T(-0.01) N(-0.02) A(-0.31)
M(-1) D(-1.01) G(-1.23) P(-1.45) L(-1.70) C(-1.91) I(-2.03) V(-2.03)
Gap (2)
Pos 9 F(5.083) Q(3.391) Y(2.092) E(0.403) W(0.108) M(-0.51) R(-0.57) K(-0.57)      L(-0.85) I(-0.89) H(-1.05) S(-1.36)
T(-1.36) N(-1.51) D(-1.51) V(-1.74) A(-2.05) P(-2.51) C(-2.74) G(-3.05)
//

===============================
 SLIM 13
===============================
ID          AChE_tetra.clust.0.2.1
Center              1vzj_CI_0
AvSimToCtr 0.461
AvRMSDToCtr 1.051   A
Size         7
NumDistinct 6
FracDDI             0
FracPeptides        1
FracIntra    0
Species             HOMO SAPIENS (6)
Conservation        1

Members
      1vzj_AI_0 1vzj_EJ_0 1vzj_BI_0 1vzj_FJ_0 1vzj_GJ_0 1vzj_DI_0 1vzj_HJ_0

Peptides
      1vzj-I 1vzj-I 1vzj-J 1vzj-I 1vzj-J 1vzj-I

PartnerDomains

Dist Members Intf   Alignment
      1vzj_CI_0     L     T     P      P    P     P     P     L   F     P     P    P      F
      1vzj_AI_0                 L      T    P     P     P     P
      1vzj_EJ_0           L     L      T    P     P     P     P   P     L     F    P
      1vzj_BI_0           L     T      P    P     P     P     P         F     P    P
      1vzj_FJ_0     L     L     T      P    P     P     P     P   L     F     P    P
      1vzj_DI_0     T     P     P      P    P     P     L         P     P     P

Dist Members ResidueID Alignment
      1vzj_CI_0   2     3     4        5    6     7     8     9   10    11    12   13     15
      1vzj_AI_0               2        3    4     5     6     7
      1vzj_EJ_0         1     2        3    4     5     6     7   8     9     10   11
      1vzj_BI_0         2     3        4    5     6     7     8         10    11   12
      1vzj_FJ_0   1     2     3        4    5     6     7     8   9     10    11   12
      1vzj_DI_0   3     4     5        6    7     8     9         11    12    13

Alignment Occupancy       0.5   0.833 1     1     1     1     1   0.833 0.666 0.833 0.833 0.666 0.166
Gap in betw Columns       0     0     0     0     0     0     0   0     0     0     0

SLIM   RegEx        [LT][LTP][TPL][PT]PP[PL][PL][PFL][FPL][PF]P
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 27.9016254473586
SLIM   I=181997 Im=21399 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 L(2.902) T(2.213) V(1.904) M(0.925) I(0.910) S(-0.69) P(-0.75) G(-0.77) D(-0.77) F(-1.03) Q(-1.55) K(-1.55)
C(-1.69) A(-1.69) N(-1.69) E(-1.69) H(-1.69) Y(-1.92) R(-2.24) W(-2.92)
Gap (0)
Pos 1 P(5.210) L(3.307) V(2.311) T(2.263) M(1.329) I(1.315) S(-0.54) F(-0.64) D(-0.64) G(-0.72) A(-1.18) Q(-1.21)
K(-1.21) C(-1.37) N(-1.37) E(-1.37) Y(-1.53) H(-1.54) R(-1.88) W(-2.53)
Gap (0)
Pos 2 P(5.903) T(2.952) L(2.904) V(1.914) M(0.967) I(0.926) S(0.071) D(0.034) G(-0.04) Q(-0.69) K(-0.69) N(-0.74)
E(-0.74) H(-0.92) F(-0.95) A(-1) C(-1.33) R(-1.54) Y(-1.69) W(-2.69)
Gap (0)
Pos 3 P(6.595) T(2.996) S(0.140) D(0.140) G(-0.00) N(-0.54) E(-0.54) Q(-0.54) K(-0.54) H(-0.85) A(-1) R(-1.54) M(-
1.54) C(-1.85) V(-2) I(-2.54) L(-2.54) Y(-2.54) F(-2.85) W(-3.54)
Gap (0)
Pos 4 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3) F(-
4) W(-4)
Gap (0)
Pos 5 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3) F(-
4) W(-4)
Gap (0)
Pos 6 P(6.817) L(2.212) V(1.241) T(0.827) M(0.295) I(0.241) A(-1) S(-1.11) Q(-1.11) K(-1.11) N(-1.15) E(-1.15) D(-
1.17) F(-1.70) R(-2) H(-2.11) G(-2.15) C(-2.27) Y(-2.27) W(-3.27)
Gap (0)
Pos 7 P(6.594) L(2.211) V(1.234) T(0.606) M(0.278) I(0.234) A(-1.18) S(-1.31) Q(-1.31) K(-1.31) N(-1.37) E(-1.37)
D(-1.39) F(-1.72) R(-2.18) H(-2.31) C(-2.35) Y(-2.35) G(-2.37) W(-3.35)
Gap (0)
Pos 8 P(5.901) F(4.210) L(2.228) V(1.239) Y(1.231) M(0.366) I(0.346) T(-0.05) W(-0.73) A(-1.57) S(-1.78) Q(-1.87)
K(-1.87) N(-1.97) E(-1.97) D(-2.01) H(-2.16) C(-2.29) R(-2.57) G(-2.87)
Gap (0)
Pos 9 P(5.901) F(4.902) L(2.245) Y(1.912) V(1.257) M(0.476) I(0.458) T(-0.02) W(-0.06) A(-1.47) S(-1.65) H(-1.73)
Q(-1.82) K(-1.82) N(-1.91) E(-1.91) D(-1.94) C(-2.09) R(-2.47) G(-2.73)
Gap (0)
Pos 10 P(6.594) F(4.208) Y(1.218) T(0.606) W(-0.76) S(-1.31) A(-1.31) M(-1.35) N(-1.37) D(-1.37) E(-1.37) Q(-1.37)
K(-1.37) I(-1.61) L(-1.61) H(-1.88) V(-1.88) G(-2.31) R(-2.31) C(-2.88)
Gap (0)
Pos 11 P(6.594) T(0.594) S(-1.40) A(-1.40) N(-1.40) D(-1.40) E(-1.40) Q(-1.40) K(-1.40) G(-2.40) H(-2.40) R(-2.40)
M(-2.40) V(-2.40) C(-3.40) I(-3.40) L(-3.40) Y(-3.40) F(-4.40) W(-4.40)
//

===============================
 SLIM 14
===============================
ID          ADH_N.clust.0.25.5
Center            1nto_BA_0
AvSimToCtr 0.474
AvRMSDToCtr 0.986 A
Size        30
NumDistinct 9
FracDDI           0.777777777777778
FracPeptides      0
FracIntra    0
Species           THERMUS THERMOPHILUS HB8 (2), BACILLUS STEAROTHERMOPHILUS (2), PSEUDOMONAS AERUGINOSA (1),
PSEUDOMONAS PUTIDA (1), SACCHAROMYCES CEREVISIAE (1), SULFOLOBUS SOLFATARICUS (1), THERMOTOGA MARITIMA (1)
Conservation      0.222222222222222

Members
      1llu_AB_0 1llu_EF_0 1llu_CD_0 1llu_GH_0 1llu_BA_0 1llu_DC_0 1llu_HG_0 1llu_FE_0 1rjw_AD_0 1rjw_DA_0
      1rjw_BC_0 1rjw_CB_0 2hcy_AB_0 2hcy_CD_0 1nto_AB_0 1nto_DC_0 3i4c_DC_0 1nto_CD_0 3i4c_AB_0 3i4c_CD_0
      3i4c_BA_0 1r37_AB_0 1r37_BA_0 2eer_AB_0 2eer_BA_0 1vj0_BD_0 2dph_AB_0 2dph_BA_0 2ejv_AB_0 2ejv_BA_0

Peptides

PartnerDomains
      ADH_zinc_N (1nto_BA_0,1llu_AB_0,1rjw_BC_0,2hcy_AB_0,1vj0_BD_0,2dph_AB_0,2ejv_AB_0)
      Pyr_redox (2ejv_AB_0)
      Methyltransf_11 (1rjw_BC_0)
      Methyltransf_12 (1nto_BA_0)
      2-Hacid_dh_C (1rjw_BC_0)
      DapB_N (2hcy_AB_0)

Dist Members Intf Alignment
      1nto_BA_0   D     T     K     K     D     A     K     Q     H     P     L     L      S     E
      1llu_AB_0                           H     R     R     G           F           L      K     G
      1rjw_AD_0                                 R     R     G           F           L      N     G
      1rjw_BC_0                           H     R     R     G           F           L      N     G
      2hcy_AB_0                     G     H     R     A     N           F           V      K     S
      1vj0_BD_0               K     R     D     R     R     G                       L      K     N
      2dph_AB_0                           D     R     A     G                       T      K     S
      2ejv_AB_0                     S     E     I           G                       M      R     G
      2ejv_BA_0                                 I     P     G                       M      R     G

Dist Members ResidueID Alignment
      1nto_BA_0   169   171   172   239   242   262   263   264   280   282   283   286    287   288
      1llu_AB_0                           238   258   259   260         278         282    283   284
      1rjw_AD_0                                 252   253   254         272         276    277   278
      1rjw_BC_0                           232   252   253   254         272         276    277   278
      2hcy_AB_0                     237   240   260   261   262         281         285    286   287
      1vj0_BD_0               185   254   257   277   278   279                     304    305   306
      2dph_AB_0                           256   290   291   292                     327    328   329
      2ejv_AB_0                     230   233   253         256                     278    279   280
      2ejv_BA_0                                 253   254   255                     278    279   280
Alignment Occupancy       0.111 0.111 0.222 0.444 0.777 1   0.888 1     0.111 0.555 0.111 1       1     1
Gap in betw Columns       19,33 0     0     17,18 3     0   0

SLIM   RegEx        [FP].{3}[LMTV][KNRS][GSNE]
SLIM   Coverage           0.555555555555556
SLIM   PSSM Match Cutoff 17.6704074622989
SLIM   I=181997 Im=5296 Id=113 Idm=6
SLIM   PSSM p-value 0.0650827112000772

PSSM Listing
Pos 0 F(5.189) P(4.802) Y(2.189) W(0.190) M(-0.77) I(-0.79) L(-0.79) T(-1.01)   H(-1.72) V(-1.72) S(-2.29) A(-2.29)
C(-2.72) N(-2.76) D(-2.76) E(-2.76) Q(-2.76) K(-2.76) G(-3.29) R(-3.29)
Gap (3)
Pos 1 M(3.622) L(3.474) V(2.848) I(1.939) T(1.830) F(-0.18) S(-0.74) A(-0.82)   Q(-0.85) P(-0.98) C(-1) Y(-1.07) G(-
1.11) D(-1.11) K(-1.26) R(-1.59) E(-1.69) N(-1.74) H(-1.74) W(-1.78)
Gap (0)
Pos 2 N(4.506) K(4.218) R(3.598) S(1.973) Q(0.763) E(0.567) T(0.049) D(-0.09)   A(-0.54) H(-0.67) G(-0.85) M(-1.15)
P(-1.32) Y(-2) L(-2.15) C(-2.46) I(-2.82) V(-2.82) F(-2.82) W(-3.15)
Gap (0)
Pos 3 G(5.413) N(3.820) E(2.827) S(2.572) T(0.848) D(0.438) Q(0.206) A(0.195)   K(-0.34) V(-0.51) R(-0.96) H(-1.17)
P(-1.54) M(-1.96) C(-2.14) W(-2.36) Y(-2.43) F(-2.67) I(-2.96) L(-2.96)
//

===============================
 SLIM 15
===============================
ID           ADH_N.clust.0.3.5
Center             2fze_AB_0
AvSimToCtr 0.589
AvRMSDToCtr 0.512 A
Size         25
NumDistinct 6
FracDDI            0.166666666666667
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (3), MUS MUSCULUS (2), GADUS CALLARIAS (1)
Conservation       0.5

Members
      1cdo_AB_0 1cdo_BA_0 1m6h_AB_0 2fzw_AB_0 1ma0_AB_0 1m6h_BA_0 1mp0_AB_0 1m6w_AB_0 1m6w_BA_0 1ma0_BA_0
      2fze_BA_0 1mc5_BA_0 1mp0_BA_0 2fzw_BA_0 1mc5_AB_0 1e3e_AB_0 1e3i_AB_0 1e3l_AB_0 1e3e_BA_0 1e3i_BA_0
      1e3l_BA_0 3cos_AB_0 3cos_BA_0 3cos_DC_0 3cos_CD_0

Peptides
PartnerDomains
      ADH_zinc_N (2fze_AB_0)

Dist Members Intf Alignment
      2fze_AB_0   E     T      D     G     Y     H     K     G     W     V     T     G
      1cdo_AB_0   E            N                 L     K     G     W     I     A     G
      1e3e_AB_0                                        L     G     W           L
      1e3i_AB_0                                        L     G     W           L     G
      3cos_AB_0                K                 T     A     G     W           I
      3cos_BA_0                K     G           T     A     G     W     I     I

Dist Members ResidueID Alignment
      2fze_AB_0   189   257   258    259   263   282   283   284   285   308   309   310
      1cdo_AB_0   191         260                284   285   286   287   309   310   311
      1e3e_AB_0                                        288   289   290         312
      1e3i_AB_0                                        288   289   290         312   313
      3cos_AB_0               265                289   290   291   292         316
      3cos_BA_0               265    266         289   290   291   292   315   316

Alignment Occupancy      0.333 0.166 0.666 0.333 0.166 0.666 1     1     1     0.5   1     0.5
Gap in betw Columns      23    0     0     0     21,22 0     0

SLIM   RegEx        [THL][AKL]GW
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 20.674954520503
SLIM   I=181997 Im=3450 Id=113 Idm=4
SLIM   PSSM p-value 0.103246686598062

PSSM Listing
Pos 0 H(6.208) T(2.911) L(2.214) V(1.228) M(0.319) D(0.309) Y(0.291) I(0.250) S(-0.01) P(-0.06) G(-0.07) N(-0.22)
Q(-0.64) E(-0.67) K(-0.87) R(-1.16) F(-1.29) A(-1.57) C(-1.64) W(-2.78)
Gap (0)
Pos 1 K(3.904) A(2.914) L(2.910) V(1.910) M(0.996) R(0.967) I(0.956) S(0.250) Q(0.071) E(0.044) T(-0.69) N(-0.74)
C(-0.74) F(-0.92) G(-0.95) P(-1.33) Y(-1.54) H(-1.69) D(-1.74) W(-2.54)
Gap (0)
Pos 2 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 3 W(11) Y(2) F(1) M(-1) C(-2) G(-2) Q(-2) H(-2) L(-2) S(-3) T(-3) A(-3) E(-3) R(-3) K(-3) I(-3) V(-3) P(-4) N(-
4) D(-4)
//

===============================
 SLIM 16
===============================
ID           APS_kinase.clust.0.25.0
Center             2pez_BA_0
AvSimToCtr 0.658
AvRMSDToCtr 0.461 A
Size         37
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            PENICILLIUM CHRYSOGENUM (2), HOMO SAPIENS (2)
Conservation       0.5

Members
      1d6j_AB_0   1d6j_BA_0   1m7g_AB_0   1m7g_CD_0   1m7g_BA_0   1m7g_DC_0   1m7h_AB_0 1m7h_CD_0 1m7h_BA_0 1m7h_DC_0
      3cr7_AB_0   3cr7_CD_0   1x6v_AB_0   1xjq_AB_0   2pey_BA_0   1xnj_AB_0   1x6v_BA_0 1xjq_BA_0 2pey_AB_0 2pez_AB_0
      1xnj_BA_0   2ax4_AB_0   2ax4_CD_0   2ax4_BA_0   2ax4_DC_0   3cr7_BA_0   3cr7_DC_0 2ofw_AB_0 2ofw_GH_0 2ofw_CD_0
      2ofw_EF_0   2ofw_HG_0   2ofw_BA_0   2ofw_DC_0   2ofw_FE_0   2ofx_AB_0   2ofx_BA_0

Peptides

PartnerDomains
      APS_kinase (2pez_BA_0,1d6j_AB_0,1m7g_AB_0,2ax4_AB_0)

Dist Members Intf   Alignment
      2pez_BA_0     Y     L       N       I      G      L     N       K       N     E     R     R     E     V     L     F     D
      A     L
      1d6j_AB_0     Y     L               I      G      L     N       K       D     E     R     R     E     V     L     F     D
      S
      1m7g_AB_0     Y     L       N       I      G      L     N       K       D     E     R     R     E     V     L     F     D
      S
      2ax4_AB_0     Y     L       N       V      G      L     N       R       N     E     R     R     E     V     L     F     D
      A     L

Dist Members ResidueID Alignment
      2pez_BA_0   84    86    90          91     94     95    96      97      98    108   111   112   115   116   119   120
      122   123   125
      1d6j_AB_0   58    60                65     68     69    70      71      72    82    85    86    89    90    93    94
      96    97
      1m7g_AB_0   58    60    64          65     68     69    70      71      72    82    85    86    89    90    93    94
      96    97
      2ax4_AB_0   84    86    90          91     94     95    96      97      98    108   111   112   115   116   119   120
      122   123   125

Alignment Occupancy       1       1       0.75   1      1     1       1       1     1     1     1     1     1     1     1     1
      1     1     0.5
Gap in betw Columns      1     3     0      2   0    0     0     0     9     2     0     2     0     2     0     1
      0     1

SLIM   RegEx        E..RR..EV..LF.D[SA].L
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 20.3068528194401
SLIM   I=181997 Im=6814 Id=4 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3) L(-3) V(-3) F(-3) W(-3) C(-4)
Gap (2)
Pos 1 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 2 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (2)
Pos 3 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3) L(-3) V(-3) F(-3) W(-3) C(-4)
Gap (0)
Pos 4 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (2)
Pos 5 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 6 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (1)
Pos 7 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (0)
Pos 8 S(3.355) A(3.355) T(0.433) N(0.433) G(0) C(-0.37) E(-0.37) Q(-0.37) K(-0.37) D(-0.56) P(-1) R(-1) M(-1) H(-
1.37) I(-1.37) L(-1.37) V(-2) F(-2) Y(-2) W(-3)
Gap (1)
Pos 9 L(3.306) V(2.306) M(1.306) I(1.306) F(-0.69) C(-1.69) A(-1.69) Y(-1.69) S(-2.69) T(-2.69) Q(-2.69) R(-2.69)
K(-2.69) W(-2.69) P(-3.69) N(-3.69) E(-3.69) H(-3.69) G(-4.69) D(-4.69)
//

===============================
 SLIM 17
===============================
ID          ATP-synt.clust.0.15.0
Center            2jj1_GD_0
AvSimToCtr 0.432
AvRMSDToCtr 1.244   A
Size         28
NumDistinct 4
FracDDI             0.25
FracPeptides        0
FracIntra    0
Species             BOS TAURUS (2), SACCHAROMYCES CEREVISIAE (2)
Conservation        0.5

Members
      1bmf_GD_0 1e1r_GD_0 1e1q_GD_0 1h8h_GD_0 1w0j_GD_0 2jiz_GD_0 2jiz_NK_0 2jj1_NK_0 2jj2_GD_0 2jj2_NK_0
      1e79_GD_0 1w0k_GD_0 2ck3_GD_0 2jdi_GD_0 1nbm_GD_0 1h8e_GD_0 2hld_PM_0 2hld_GD_0 2hld_YV_0 2v7q_GD_0
      2hld_GC_0 2hld_PL_0 2jiz_GC_0 2jiz_NJ_0 2jj1_NJ_0 2jj2_GC_0 2jj2_NJ_0 2v7q_GC_0

Peptides

PartnerDomains
      ATP-synt_ab (2jj1_GD_0)

Dist Members Intf Alignment
      2jj1_GD_0   A     G         R      I      P     S     A     V     G     S     D      I      I      L      E
      2hld_GC_0                          P      P     G     R     E     A
      2hld_PL_0         R                P      P     G     R     E     A
      2v7q_GC_0         R                P      P     G     R     E     A                                       Q

Dist Members ResidueID Alignment
      2jj1_GD_0   270   273   274        275    276   277   278   279   280   383   386    387    390    391    395
      2hld_GC_0                          290    291   292   293   294   295
      2hld_PL_0         288              290    291   292   293   294   295
      2v7q_GC_0         286              288    289   290   291   292   293                                     415

Alignment Occupancy        0.25   0.75   0.25   1     1     1     1     1     1     0.25   0.25   0.25   0.25   0.25   0.5
Gap in betw Columns        1      0      0      0     0     0     114,116

SLIM   RegEx        [RG].[PI]P[GS][RA][EV][AG]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 22.1185224466157
SLIM   I=181997 Im=7151 Id=31 Idm=3
SLIM   PSSM p-value 0.0887538232466448

PSSM Listing
Pos 0 G(4.614) R(4.307) K(1.315) Q(0.331) T(-0.14) N(-0.62) E(-0.62) H(-0.62) S(-0.83) A(-0.83) V(-1.29) M(-1.62)
D(-1.83) P(-2.28) Y(-2.52) L(-2.62) W(-2.83) C(-3.28) F(-3.28) I(-3.52)
Gap (1)
Pos 1 P(6.712) I(2.616) T(0.728) L(0.633) M(-0.24) V(-0.24) A(-1) S(-1.17) N(-1.24) D(-1.24) E(-1.24) Q(-1.24) K(-
1.24) F(-1.33) C(-2.04) Y(-2.04) H(-2.17) R(-2.17) G(-2.24) W(-3.64)
Gap (0)
Pos 2 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3) F(-
4) W(-4)
Gap (0)
Pos 3 G(5.713) S(2.667) T(1) A(0.357) V(-0.24) N(-0.24) D(-0.64) E(-1.04) Q(-1.04) K(-1.04) P(-1.64) H(-1.64) R(-
1.64) C(-2.04) M(-2.04) W(-2.17) F(-2.64) Y(-2.64) I(-3.04) L(-3.04)
Gap (0)
Pos 4 R(4.713) A(2.633) K(1.728) Q(0.756) S(-0.04) N(-0.17) E(-0.17) H(-0.24) T(-1) M(-1) G(-1.04) C(-1.24) P(-1.64)
L(-1.64) D(-2) Y(-2) I(-2.04) V(-2.64) F(-2.64) W(-3)
Gap (0)
Pos 5 E(4.712) V(2.616) Q(1.718) D(1.714) I(1.621) K(0.728) S(-0.24) T(-0.24) M(-0.24) N(-0.27) H(-0.27) R(-0.27)
L(-0.33) A(-0.64) P(-1.17) Y(-1.64) F(-2.04) G(-2.17) C(-2.24) W(-3)
Gap (0)
Pos 6 G(4.621) A(3.718) S(0.827) T(-0.04) C(-0.27) V(-1.04) P(-1.17) N(-1.17) E(-1.17) Q(-1.17) R(-1.17) K(-1.17)
M(-1.24) I(-1.27) L(-1.27) D(-1.64) H(-2) F(-2.17) Y(-2.17) W(-2.64)
//

===============================
 SLIM 18
===============================
ID           ATP-synt_ab.clust.0.15.1
Center             2jiz_EG_1
AvSimToCtr 0.356
AvRMSDToCtr 2.461 A
Size         69
NumDistinct 13
FracDDI            1
FracPeptides       0
FracIntra    0
Species            BOS TAURUS (8), SACCHAROMYCES CEREVISIAE (5)
Conservation       0.615384615384615

Members
      1bmf_AG_1   1e1q_AG_1   1h8h_AG_1   1e1r_AG_1   1e79_AG_1   2jdi_AG_1   1nbm_AG_1   1w0j_AG_1   2ck3_AG_1   2jiz_AG_1
      2jiz_HN_1   2jj2_AG_1   2jj2_HN_1   2jj1_AG_1   2jj1_HN_1   1w0k_AG_1   1h8e_AG_1   2v7q_AG_1   1bmf_DG_1   2jiz_DG_1
      2jiz_KN_1   2jj2_DG_1   2jj2_KN_1   2jj1_DG_1   2jj1_KN_1   2jdi_DG_1   1e1q_DG_1   1e1r_DG_1   1h8h_DG_1   1e79_DG_1
      1h8e_DG_1   1w0j_DG_1   2ck3_DG_1   1nbm_DG_1   2hld_MP_1   2hld_VY_1   2v7q_DG_1   1bmf_EG_1   1e1q_EG_1   1h8h_EG_1
      1e1r_EG_1   2jiz_LN_1   2jj2_EG_1   2jj2_LN_1   2jj1_EG_1   2jj1_LN_1   2ck3_EG_1   2jdi_EG_1   1e79_EG_1   1w0j_EG_1
      1w0k_EG_1   1nbm_EG_1   2hld_EG_1   2hld_WY_1   2v7q_EG_1   1h8e_EG_1   2hld_NP_1   1bmf_CG_1   2jiz_CG_1   2jiz_JN_1
      2jj1_JN_1   2jj2_CG_1   2jj2_JN_1   2v7q_CG_1   1nbm_CG_1   1ohh_CG_1   2hld_CG_1   2hld_LP_1   2hld_UY_1

Peptides
PartnerDomains
      ATP-synt
(2jiz_EG_1,1bmf_AG_1,1e1q_AG_1,1w0k_AG_1,1bmf_DG_1,2hld_MP_1,2hld_VY_1,2v7q_DG_1,2hld_EG_1,1bmf_CG_1,2jiz_CG_1,2hld
_CG_1,2hld_LP_1)

Dist Members Intf   Alignment
      2jiz_EG_1     N     R     Q     I     T     L     I
      1bmf_AG_1     I     E     L     I     I     A     L
      1e1q_AG_1                 I     E     L     I     A
      1w0k_AG_1     I     L     I           I     A     L
      1bmf_DG_1     E     E     I     G     A     L
      2hld_MP_1                 E     D     I     G     A
      2hld_VY_1     E     D     I     G     A
      2v7q_DG_1     K     E     I     G     A     L
      2hld_EG_1     N     R     Q     I     T     L     I
      1bmf_CG_1           E     S     G     A     L
      2jiz_CG_1           K     E     S     G     A     L
      2hld_CG_1                 D     T     G           S
      2hld_LP_1                 D     T     G     S

Dist Members ResidueID Alignment
      2jiz_EG_1   251   254   255     258   259   262   266
      1bmf_AG_1   258   261   262     265   266   269   272
      1e1q_AG_1               258     261   262   265   269
      1w0k_AG_1   258   262   265           266   269   272
      1bmf_DG_1   261   264   265     268   269   272
      2hld_MP_1               266     269   270   273   274
      2hld_VY_1   266   269   270     273   274
      2v7q_DG_1   4     264   265     268   269   272
      2hld_EG_1   256   259   260     263   264   267   271
      1bmf_CG_1         264   267     268   271   272
      2jiz_CG_1         260   264     267   268   271   272
      2hld_CG_1               269     272   273         276
      2hld_LP_1               269     272   273   276

Alignment Occupancy       0.538 0.692 1     0.923 1     0.846 0.615
Gap in betw Columns       2,250 0,3   0,2   0,2   0,2   0,3

SLIM   RegEx        [ERDKL].{0,3}[IQDESL].{0,2}[GITSDE].{0,2}[AIGTL].{0,2}[LASIG].{0,3}[LAIS]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 22.7895604614149
SLIM   I=181997 Im=4169 Id=155 Idm=3
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(3.841) D(3.507) R(3.166) K(2.597) L(1.446) Q(1.094) V(0.454) N(-0.28)               M(-0.35) T(-0.41) I(-0.51) S(-0.63)
H(-0.65) A(-1.44) P(-1.63) F(-2.22) Y(-2.25) G(-2.27) C(-3.01) W(-3.25)
Gap (0,3)
Pos 1 D(4.150) E(3.227) Q(3.187) I(3.072) L(1.957) S(1.552) V(0.969) M(0.601)              K(-0.00) T(-0.00) N(-0.04) R(-0.42)
A(-0.66) F(-0.70) H(-0.87) Y(-1.32) P(-1.50) C(-1.53) G(-1.69) W(-2.73)
Gap (0,2)
Pos 2 G(4.825) D(3.472) I(2.537) E(2.507) T(2.278) S(1.631) L(0.558) V(-0.02)               Q(-0.07) M(-0.29) N(-0.35) A(-0.36)
P(-0.58) K(-0.65) H(-1.07) F(-1.25) R(-1.49) C(-1.65) Y(-1.92) W(-2.66)
Gap (0,2)
Pos 3 G(4.541) A(2.844) I(2.588) T(2.217) L(1.798) V(0.902) S(0.423) M(0.319)              P(-0.54) D(-0.58) C(-0.71) F(-0.96)
Q(-1.13) K(-1.13) N(-1.15) E(-1.15) H(-1.41) R(-1.50) Y(-1.67) W(-2.57)
Gap (0,2)
Pos 4 G(3.445) L(3.075) A(2.569) V(2.086) I(1.965) S(1.602) M(1.153) T(-0.56)               F(-0.67) C(-0.83) N(-1.11) Q(-1.47)
K(-1.47) Y(-1.53) E(-1.63) R(-1.71) D(-1.91) P(-1.92) H(-2.37) W(-2.50)
Gap (0,3)
Pos 5 L(2.624) I(2.319) A(2.169) V(1.626) S(1.541) M(0.792) F(-0.87) C(-1.12)               T(-1.14) N(-1.25) G(-1.43) Y(-1.75)
Q(-1.75) K(-1.75) E(-1.87) R(-2.08) D(-2.21) P(-2.26) H(-2.68) W(-2.98)
//

===============================
 SLIM 19
===============================
ID           ATP-synt_ab_N.clust.0.2.2
Center             1w0j_CD_0
AvSimToCtr 0.506
AvRMSDToCtr 1.234 A
Size         129
NumDistinct 6
FracDDI            1
FracPeptides       0
FracIntra    0
Species            BOS TAURUS (3), SACCHAROMYCES CEREVISIAE (3)
Conservation       0.5

Members
      1bmf_AE_0   1nbm_AE_0   1bmf_BF_0   1bmf_CD_0   1e1q_CD_0   1h8h_CD_0   1e1r_CD_0   2ck3_CD_0   2jdi_CD_0   2jj2_CD_0
      2jj2_JK_0   2jiz_CD_0   2jiz_JK_0   1e79_CD_0   1h8e_CD_0   2v7q_AE_0   2v7q_CD_0   1w0k_CD_0   2jj1_CD_0   2jj1_JK_0
      1e1q_AE_0   1h8h_AE_0   1e1r_AE_0   1h8e_AE_0   1w0j_AE_0   2ck3_AE_0   2jdi_AE_0   2jiz_AE_0   2jiz_HL_0   2jj2_AE_0
      2jj2_HL_0   1e79_AE_0   1w0k_AE_0   2jj1_AE_0   2jj1_HL_0   1nbm_CD_0   1e1q_BF_0   1h8h_BF_0   1e79_BF_0   1w0j_BF_0
      2jiz_BF_0   2jiz_IM_0   2jj2_BF_0   2jj2_IM_0   1h8e_BF_0   2ck3_BF_0   2jdi_BF_0   2v7q_BF_0   2jj1_BF_0   2jj1_IM_0
      1w0k_BF_0   1e1r_BF_0   1nbm_BF_0   2hld_JN_0   2hld_LM_0   2hld_AE_0   2hld_SW_0   2hld_CD_0   2hld_UV_0   1ohh_BF_0
      2hld_BF_0   2hld_KO_0   2hld_TX_0   1bmf_DA_0   1e1q_DA_0   1h8h_DA_0   1e1r_DA_0   1e79_DA_0   1w0j_DA_0   2jdi_DA_0
      2ck3_DA_0   2ck3_FC_0   2jdi_FC_0   1h8e_DA_0   2jiz_DA_0   2jiz_KH_0   2jj2_DA_0   2jj2_KH_0   2jj1_DA_0   2jj1_KH_0
      1w0k_DA_0   1ohh_EB_0   1bmf_FC_0   1e1r_FC_0   1e79_FC_0   1h8e_FC_0   1w0j_FC_0   2jiz_FC_0   2jiz_MJ_0   2jj2_FC_0
      2jj2_MJ_0   2jj1_FC_0   2jj1_MJ_0   1e1q_FC_0   1h8h_FC_0   1w0k_FC_0   2v7q_DA_0   2v7q_FC_0   1nbm_DA_0   1nbm_FC_0
        2hld_DA_0 2hld_MJ_0 2hld_VS_0 2hld_FC_0 2hld_XU_0 2hld_OL_0 2v7q_EB_0 1bmf_EB_0 1e1q_EB_0 1h8h_EB_0
        1e1r_EB_0 1e79_EB_0 1h8e_EB_0 1w0j_EB_0 2jj2_EB_0 2jj2_LI_0 2jiz_EB_0 2jiz_LI_0 2jj1_EB_0 2jj1_LI_0
        2ck3_EB_0 2jdi_EB_0 1w0k_EB_0 1nbm_EB_0 2hld_EB_0 2hld_WT_0 2hld_NK_0 1mab_BA_0 2f43_BA_0

Peptides

PartnerDomains
      ATP-synt_ab_N (1w0j_CD_0,2hld_JN_0,1bmf_DA_0,1e1r_DA_0,2hld_DA_0,2hld_MJ_0)

Dist Members Intf   Alignment
      1w0j_CD_0     V     A     V     I     G     T     E     G     L     V     R
      2hld_JN_0     T     A     V     I     G     T     E     G     L     V     R
      1bmf_DA_0     L     S     I     G     D     D     K           I     K     E
      1e1r_DA_0     L     S     I     G     D     D           K     I     K     E
      2hld_DA_0     L     A     V     G     D     D           R     V     K     E
      2hld_MJ_0     L     A     V     G     D     D     R           V     K     E

Dist Members ResidueID Alignment
      1w0j_CD_0   14    15    16      17    18    66    67    68    69    70    71
      2hld_JN_0   14    15    16      17    18    67    68    69    70    71    72
      1bmf_DA_0   32    33    34      35    36    79    80          82    83    84
      1e1r_DA_0   32    33    34      35    36    79          80    82    83    84
      2hld_DA_0   34    35    36      37    38    81          82    84    85    86
      2hld_MJ_0   34    35    36      37    38    81    82          84    85    86

Alignment Occupancy       1     1     1     1     1     1     0.666 0.666 1     1     1
Gap in betw Columns       0     0     0     0     42,48 0     0     0,1   0     0

SLIM   RegEx        [DT][ERK][GRK].{0,1}[ILV][KV][ER]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 20.6434529955623
SLIM   I=181997 Im=9244 Id=181 Idm=14
SLIM   PSSM p-value 0.034941672541359

PSSM Listing
Pos 0 D(5.597) T(2.996) E(1.660) N(0.763) S(0.452) P(0.140) G(0.140) Q(0) H(-0.54) K(-0.54) A(-1.54) R(-1.54) C(-
1.85) M(-1.85) I(-2.54) V(-2.54) F(-2.54) Y(-2.54) L(-2.85) W(-3.54)
Gap (0)
Pos 1 E(3.913) K(3.291) R(3.269) Q(1.214) D(0.934) N(-0.40) S(-0.57) T(-0.57) H(-0.57) A(-1.40) P(-1.57) M(-1.78)
G(-2.40) Y(-2.40) L(-2.78) I(-3.40) V(-3.40) F(-3.40) W(-3.40) C(-3.78)
Gap (0)
Pos 2 G(4.901) R(3.258) K(3.258) T(0.125) Q(-0.05) E(-0.40) S(-0.57) A(-0.78) N(-0.97) V(-1.05) H(-1.29) D(-1.57)
M(-1.97) P(-2.04) Y(-2.78) W(-2.78) L(-2.97) C(-3.40) F(-3.40) I(-3.78)
Gap (0,1)
Pos 3 I(3.308) V(3.250) L(3.071) M(1.452) F(-0.23) A(-0.54) C(-1) Y(-1) S(-2) T(-2) Q(-2.23) K(-2.23) P(-2.54) E(-
2.54) R(-2.54) W(-2.54) N(-3) H(-3) D(-3.23) G(-3.54)
Gap (0)
Pos 4 K(4.594) V(2.903) I(1.906) R(1.597) E(0.619) Q(0.619) M(0.140) L(-0.00) S(-0.33) T(-0.33) N(-0.38) A(-0.54)
P(-1.23) D(-1.33) H(-1.33) Y(-1.54) C(-1.85) F(-1.85) G(-2.23) W(-3)
Gap (0)
Pos 5 E(4.597) R(3.914) Q(1.763) D(1.603) K(1.452) N(0) H(0) S(-0.23) T(-0.23) A(-1) P(-1.23) M(-1.54) G(-2) Y(-2)
L(-2.54) I(-3) V(-3) F(-3) W(-3) C(-3.54)
//

===============================
 SLIM 20
===============================
ID           Abhydrolase_1.clust.0.2.4
Center             1va4_DE_2
AvSimToCtr 0.607
AvRMSDToCtr 0.667 A
Size         14
NumDistinct 5
FracDDI            0.8
FracPeptides       0
FracIntra    0
Species            STREPTOMYCES LIVIDANS (2), PSEUDOMONAS FLUORESCENS (1), PSEUDOMONAS PUTIDA (1)
Conservation       0.5

Members
      1a88_AC_1 1a88_BA_1 1a88_CB_1 1va4_AC_2 1va4_FD_2 1va4_CB_2 1va4_BA_2 1va4_EF_2 1zoi_AC_2 1zoi_CB_2
      1zoi_BA_2 3fob_AB_2 3fob_BC_1 3fob_CA_2

Peptides

PartnerDomains
      Abhydrolase_1 (1va4_DE_2,1a88_AC_1,1a88_CB_1,3fob_AB_2)
      PGAP1 (1va4_DE_2,3fob_AB_2)
      AXE1 (1a88_AC_1,1a88_CB_1)
      Peptidase_S15 (1va4_DE_2)

Dist Members Intf   Alignment
      1va4_DE_2     Q     D     R   A     Q     S     L     Q     L     L
      1a88_AC_1     Q     N         A     Q     I     W     L     M     M
      1a88_CB_1     Q     N     R   A     Q     I     W     L     M     M
      1zoi_AC_2     Q               A     Q     R     W           M     I
      3fob_AB_2     Q     D     R   L     A     D     W     D     A

Dist Members ResidueID Alignment
       1va4_DE_2   62    150   151   152    153   156   180   181   184   185
       1a88_AC_1   64    152         154    155   158   184   185   188   189
       1a88_CB_1   64    152   153   154    155   158   184   185   188   189
       1zoi_AC_2   65                155    156   159   185         189   190
       3fob_AB_2   67    156   157   158    159   162   187   188   191

Alignment Occupancy      1     0.8   0.6    1     1     1     1     0.8   1     0.8
Gap in betw Columns      87,88 0     0      0     2     23,25 0     2     0

SLIM   RegEx        [ND]R[AL][QA]..[ISDR]
SLIM   Coverage           0.6
SLIM   PSSM Match Cutoff 16.8783711244429
SLIM   I=181997 Im=6206 Id=101 Idm=2
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 N(5.090) D(5.090) E(1.210) S(0.396) T(0.396) Q(-0.22) G(-0.60) K(-0.60)   R(-0.78) H(-1.22) P(-1.60) A(-2.22)
M(-2.60) Y(-2.60) C(-3.22) I(-3.22) V(-3.22) F(-3.22) L(-3.60) W(-4.22)
Gap (0)
Pos 1 R(4.489) K(1.489) Q(0.489) N(-0.51) E(-0.51) H(-0.51) S(-1.51) T(-1.51)   A(-1.51) M(-1.51) P(-2.51) G(-2.51)
D(-2.51) L(-2.51) Y(-2.51) C(-3.51) I(-3.51) V(-3.51) F(-3.51) W(-3.51)
Gap (0)
Pos 2 A(3.778) L(2.417) V(1.417) S(0.789) M(0.572) I(0.572) C(-0.13) G(-0.21)   T(-1.13) Q(-1.13) R(-1.13) K(-1.13)
F(-1.17) P(-1.18) N(-1.18) E(-1.18) Y(-1.70) H(-2.13) D(-2.18) W(-2.70)
Gap (0)
Pos 3 Q(4.777) A(2.417) E(1.789) R(0.810) K(0.810) S(0.295) T(-0.13) N(-0.13)   M(-0.13) D(-0.18) H(-0.18) P(-1) Y(-
1.13) G(-1.17) C(-1.42) L(-1.70) V(-2) W(-2.13) I(-2.17) F(-2.70)
Gap (2)
Pos 4 D(4.393) R(3.394) I(3.085) S(2.420) L(1.103) E(0.640) K(0.571) N(0.267)   M(0.218) T(0.194) V(0.126) Q(-0.03)
A(-0.23) F(-0.80) H(-1.00) G(-1.17) C(-1.42) Y(-1.55) P(-1.63) W(-3.13)
//

===============================
 SLIM 21
===============================
ID           Acetyltransf_1.clust.0.15.3
Center             2fs5_BA_0
AvSimToCtr 0.398
AvRMSDToCtr 2.557 A
Size         9
NumDistinct 7
FracDDI            0
FracPeptides       0
FracIntra    0
Species            SACCHAROMYCES CEREVISIAE (4), ENTEROCOCCUS FAECALIS V583 (2), ESCHERICHIA COLI (1)
Conservation        0.571428571428571

Members
      1qsm_BD_0 1qso_AC_0 1qso_BD_0 1qso_CA_0 2fs5_AB_0 2ft0_AB_0 2ft0_BA_0 2i00_CD_0 2i00_DC_0

Peptides

PartnerDomains

Dist Members Intf Alignment
      2fs5_BA_0   A     S       G       E    V     M     L     K     I     Q     A       N     V     E     S     T     A
      Y
      1qsm_BD_0                                          E                               R     Q     L     V     K
      1qso_AC_0                                                                                H     R     Q
      K
      1qso_BD_0                                          N           R           Q       L           V     K
      1qso_CA_0                              E           S           H           Q       L           V     K
      2i00_CD_0                                          A     F     L                   E     D                 Q
      2i00_DC_0                                          A     F     L           L       E     D

Dist Members ResidueID Alignment
      2fs5_BA_0   50    51    69        70   71    199   205   206   209   210   213     214   215   216   217   218
      219   220
      1qsm_BD_0                                          130                             134   136   137   140   145
      1qso_AC_0                                                                                133   134   136
      145
      1qso_BD_0                                          132         134         136     137         140   145
      1qso_CA_0                              130         131         133         136     137         140   145
      2i00_CD_0                                          279   280   282                 283   284               286
      2i00_DC_0                                          279   280   281         282     283   284

Alignment Occupancy     0.142 0.142 0.142 0.142 0.285 0.142 0.857 0.428 0.714 0.142 0.571 0.857 0.714 0.714 0.714
      0.428 0.142 0.285
Gap in betw Columns     1,3   0,3   0     0,1   0     0,4

SLIM   RegEx        [ASNEL].{1,3}[LHRI].{0,3}[QAL][ELNR].{0,1}[DHQV][VRLE].{0,4}[KSQV]
SLIM   Coverage           0.857142857142857
SLIM   PSSM Match Cutoff 25.579460654263
SLIM   I=181997 Im=8530 Id=202 Idm=6
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 N(4.065) E(3.072) A(2.779) S(2.211) L(2.071) V(1.078) D(0.487) Q(0.382) M(0.224) I(0.177) K(-0.22) T(-0.22)
G(-0.52) R(-0.77) C(-0.91) H(-1.22) P(-1.44) F(-1.53) Y(-1.90) W(-2.98)
Gap (1,3)
Pos 1 H(6.054) R(3.062) L(2.814) I(2.295) V(1.817) M(0.944) Y(0.209) K(0.143)   Q(-0.54) N(-0.59) F(-0.71) D(-0.86)
E(-1.18) T(-1.37) A(-1.47) C(-1.76) S(-1.81) W(-2.62) P(-2.81) G(-3.06)
Gap (0,3)
Pos 2 Q(3.748) A(2.074) L(2.065) V(1.074) E(0.775) M(0.332) I(0.115) R(-0.16)   K(-0.16) S(-0.36) T(-1.02) N(-1.06)
H(-1.16) D(-1.17) C(-1.56) G(-1.69) Y(-1.73) F(-1.73) P(-1.80) W(-2.73)
Gap (0)
Pos 3 N(4.061) E(3.754) R(3.075) L(2.749) V(1.752) Q(0.986) D(0.925) M(0.798)   I(0.760) K(0.700) S(-0.26) T(-0.65)
H(-0.70) F(-1.15) A(-1.26) G(-1.57) Y(-1.70) P(-1.84) C(-2.08) W(-2.77)
Gap (0,1)
Pos 4 H(6.054) D(4.751) Q(3.074) V(2.060) E(1.202) I(1.063) N(0.273) Y(0.161)   T(0.078) R(-0.54) K(-0.57) M(-0.57)
S(-0.69) L(-0.86) A(-1.37) P(-1.62) G(-1.89) F(-2.06) C(-2.51) W(-2.97)
Gap (0)
Pos 5 E(3.062) R(3.062) V(2.916) L(2.152) I(1.918) M(0.644) Q(0.406) K(0.406)   D(0.087) A(-0.81) N(-1.18) H(-1.18)
F(-1.33) S(-1.37) T(-1.37) Y(-1.62) C(-1.78) P(-2.13) G(-2.89) W(-3.04)
Gap (0,4)
Pos 6 K(3.760) Q(3.097) S(2.109) V(2.060) I(1.068) R(0.939) E(0.690) T(-0.17)   N(-0.19) A(-0.37) M(-0.37) L(-0.76)
D(-0.92) H(-1.17) P(-1.47) G(-1.57) Y(-1.81) C(-2.06) F(-2.37) W(-3.04)
//

===============================
 SLIM 22
===============================
ID           Acetyltransf_1.clust.0.25.9
Center             2pdo_BA_0
AvSimToCtr 0.477
AvRMSDToCtr 0.875 A
Size         15
NumDistinct 4
FracDDI            0.25
FracPeptides       0
FracIntra    0
Species            SALMONELLA ENTERITIDIS (2), SHIGELLA FLEXNERI 2A (1)
Conservation       0.666666666666667

Members
      1s3z_AB_0 2vbq_AB_0 1s5k_AB_0 1s3z_BA_0 2vbq_BA_0 1s5k_BA_0 2pdo_AB_0 2pdo_CD_0 2pdo_FE_0 2pdo_GH_0
      2pdo_EF_0 2pdo_DC_0 2pdo_HG_0 2r1i_AB_0 2r1i_BA_0

Peptides

PartnerDomains
      Acetyltransf_1 (2r1i_AB_0)

Dist Members Intf Alignment
        2pdo_BA_0   N     D      R      K      N      H      G      G      Y     D     G      H      R     S     Y     Y     Q
        N     D     V     L      S      L      G      K      R      L      I     D
        1s3z_AB_0
              R     V     I      F      Y      R      K      R      C
        1s5k_AB_0                                                                                    Y
              R     V     I      F      Y      R      K      R      C
        2r1i_AB_0                                                   S      F     R     P      N            I     D           E
        N                 L      Y      Y      Y      R      E      L

Dist Members ResidueID Alignment
      2pdo_BA_0   28    33    36        37     39     40     60     61     62    63    64     65     66    68    70    71
      104   106   127   128   129       130    131    132    133    134    135   136   138
      1s3z_AB_0
            137   138   139   140       141    142    143    144    145
      1s5k_AB_0                                                                                      66
            137   138   139   140       141    142    143    144    145
      2r1i_AB_0                                                     85     86    87    88     89           98    100
      134   136               165       166    167    168    169    170    171

Alignment Occupancy       0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.5   0.5   0.5    0.5    0.5   0.5   0.5   0.5
      0.25 0.5    0.5     0.75   0.75   1      1      1      1      1      1     1     0.25   0.25
Gap in betw Columns       0      0      0      0      0      1      1      33    1     20     0      0     0     0     0     0
      0     0

SLIM   RegEx        [RD]V[IL][FSY][YL][RGY][KR][RE][CL]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 23.6877426284425
SLIM   I=181997 Im=4843 Id=202 Idm=2
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 D(4.614) R(4.307) K(1.331) E(0.853) Q(0.475) N(0.165) T(-0.14) H(-0.52) S(-0.83) A(-1.52) M(-1.62) P(-1.83)
G(-1.83) Y(-2.52) L(-2.62) C(-3.28) I(-3.28) V(-3.28) F(-3.28) W(-3.52)
Gap (0)
Pos 1 V(3.712) I(2.712) M(0.712) L(0.712) A(-0.28) C(-1.28) F(-1.28) Y(-1.28) S(-2.28) T(-2.28) P(-2.28) E(-2.28)
Q(-2.28) K(-2.28) G(-3.28) N(-3.28) D(-3.28) H(-3.28) R(-3.28) W(-3.28)
Gap (0)
Pos 2 I(3.433) L(3.433) V(2.433) M(1.620) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2.37) R(-2.37) K(-2.37) W(-2.37)
P(-3) N(-3) E(-3) H(-3) D(-3.37) G(-4)
Gap (0)
Pos 3 Y(5.649) F(5.331) S(2.621) W(1.169) H(0.752) T(-0.24) A(-0.24) N(-0.30) M(-0.37) I(-0.46) L(-0.46) Q(-1.00)
V(-1.17) E(-1.17) K(-1.17) G(-1.24) D(-1.24) C(-1.64) R(-1.89) P(-2.17)
Gap (0)
Pos 4 Y(6.712) F(2.728) L(2.633) W(1.718) H(1.714) V(1.667) M(0.752) I(0.752) Q(-1.17) C(-1.64) A(-1.64) S(-2) T(-2)
R(-2) K(-2) N(-2.17) E(-2.17) P(-3) G(-3.17) D(-3.17)
Gap (0)
Pos 5 Y(5.613) G(4.614) R(4.307) F(1.621) K(1.325) H(0.867) W(0.645) Q(0.395) T(-0.10) N(-0.56) E(-0.56) S(-0.75)
A(-0.75) V(-1.00) M(-1.24) D(-1.75) L(-1.80) I(-2.10) P(-2.17) C(-2.64)
Gap (0)
Pos 6 K(4.728) R(3.752) Q(1) E(0.827) N(0) S(-0.17) T(-0.17) H(-0.64) A(-1) M(-1) P(-1.17) D(-1.17) G(-2) L(-2) Y(-
2) C(-3) I(-3) V(-3) F(-3) W(-3)
Gap (0)
Pos 7 R(4.714) E(3.633) K(1.827) Q(1.357) D(0.667) N(0) H(0) S(-0.64) T(-0.64) A(-1) M(-1.17) P(-1.64) G(-2) Y(-2)
L(-2.17) I(-3) V(-3) F(-3) W(-3) C(-3.17)
Gap (0)
Pos 8 C(8.306) L(3.313) V(2.325) M(1.355) I(1.355) A(-0.37) F(-0.56) S(-1.37) T(-1.37) Y(-1.37) W(-2) Q(-2.37) R(-
2.37) K(-2.37) P(-3) N(-3) H(-3) G(-3.37) D(-3.37) E(-3.37)
//

===============================
 SLIM 23
===============================
ID           Acetyltransf_1.clust.0.3.7
Center             2j8n_AB_0
AvSimToCtr 0.585
AvRMSDToCtr 0.636 A
Size         21
NumDistinct 5
FracDDI            0.2
FracPeptides       0
FracIntra    0
Species            ACINETOBACTER BAYLYI (2), PSEUDOMONAS AERUGINOSA (1), SALMONELLA TYPHIMURIUM (1), AGROBACTERIUM
TUMEFACIENS (1)
Conservation       0.4

Members
      1yr0_AB_0 1yr0_BA_0 1yr0_DC_0 1yr0_CD_0 1yvo_AB_0 1yvo_BA_0 2j8m_AB_0 2j8m_BA_0 2j8n_BA_0 2j8r_AB_0
      2j8r_BA_0 2jlm_AB_0 2jlm_CD_0 2jlm_EF_0 2jlm_BA_0 2jlm_FE_0 2jlm_DC_0 3dr6_AB_0 3dr6_BA_0 3dr8_AB_0
      3dr8_BA_0

Peptides

PartnerDomains
      Acetyltransf_1 (1yr0_AB_0)

Dist Members Intf   Alignment
      2j8n_AB_0     W     N     E   T     W     R     E     A     M     P     Q     V     G     Q     W     L        F
      1yr0_AB_0     W     N     E   V     W     R     E     A     F     S     E     V     G     T     W     L
      2jlm_AB_0     Y     D               F     R     E     C     I     Q     Q     A     G     F     W     A        F
      2jlm_BA_0     Y     D     Y         F     R     E     C           Q     Q     A     G     F     W     A        F
        3dr6_AB_0   W     N     D     R     W     R     E    G           P     Q     V     G     V     W     L     F

Dist Members ResidueID Alignment
      2j8n_AB_0   31    32    33      34    74    75    85   122   145   146   147   148   149   150   155   158
      160
      1yr0_AB_0   33    34    35      36    75    76    86   123   146   147   148   149   150   151   156   159
      2jlm_AB_0   39    40                  82    83    93   130   153   154   155   156   157   158   163   166
      168
      2jlm_BA_0   39    40    41            82    83    93   130         154   155   156   157   158   163   166
      168
      3dr6_AB_0   29    30    31      32    71    72    82   119         143   144   145   146   147   152   155
      157

Alignment Occupancy       1     1     0.8   0.6   1     1    1     1     0.6   1     1     1     1     1     1     1
      0.8
Gap in betw Columns       0     0     0     38,39 0     9    36    22    0     0     0     0     0     4     2     1

SLIM   RegEx        [FMI][QPS][QE][VA]G[FQTV].{4}W..[LA].F
SLIM   Coverage           0.6
SLIM   PSSM Match Cutoff 22.9620110227536
SLIM   I=181997 Im=2984 Id=202 Idm=2
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 F(4.395) M(3.415) I(2.456) Y(1.426) L(1.149) V(-0.43) W(-0.46) Q(-1.51) C(-1.74) A(-1.74) S(-2.05) T(-2.05)
H(-2.20) R(-2.36) K(-2.36) N(-3.05) E(-3.05) P(-3.20) D(-3.51) G(-3.74)
Gap (0)
Pos 1 P(6.084) Q(4.089) S(2.439) E(1.194) T(0.708) K(0.360) R(0.194) N(0.086) A(-0.17) D(-0.29) H(-0.63) M(-0.63)
G(-1.17) Y(-1.63) V(-2) C(-2.17) L(-2.29) W(-2.63) I(-2.70) F(-2.91)
Gap (0)
Pos 2 Q(4.789) E(3.572) K(1) R(0.864) D(0.823) S(0) T(0) N(0) H(0) M(-0.18) P(-1) A(-1) Y(-1.13) G(-2) L(-2.13) V(-
2.13) W(-2.13) I(-3) F(-3) C(-3.13)
Gap (0)
Pos 3 V(3.490) A(3.110) I(2.501) M(0.575) L(0.575) S(0.155) C(-0.47) G(-0.84) F(-1.29) Y(-1.29) T(-1.47) P(-1.47)
E(-1.47) Q(-1.47) K(-1.47) N(-1.73) R(-1.73) D(-2.47) H(-2.47) W(-3)
Gap (0)
Pos 4 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 5 F(5.084) Q(3.398) T(2.415) V(2.408) Y(2.105) I(1.493) E(0.545) M(0.196) W(0.126) L(-0.00) S(-0.19) K(-0.23)
D(-0.25) P(-0.42) R(-0.43) G(-0.50) H(-0.58) N(-0.84) A(-0.91) C(-1.55)
Gap (4)
Pos 6 W(11) Y(2) F(1) M(-1) C(-2) G(-2) Q(-2) H(-2) L(-2) S(-3) T(-3) A(-3) E(-3) R(-3) K(-3) I(-3) V(-3) P(-4) N(-
4) D(-4)
Gap (2)
Pos 7 L(3.493) A(3.093) V(2.493) M(1.521) I(1.521) S(0.155) F(-0.42) C(-0.47) G(-0.88) Y(-1.29) T(-1.47) Q(-1.47)
R(-1.47) K(-1.47) P(-1.73) N(-1.73) E(-1.73) W(-2.29) H(-2.47) D(-2.73)
Gap (1)
Pos 8 F(5.776) Y(2.776) W(0.776) M(-0.22) I(-0.22) L(-0.22) H(-1.22) V(-1.22) C(-2.22) S(-2.22) T(-2.22) A(-2.22)
G(-3.22) N(-3.22) D(-3.22) E(-3.22) Q(-3.22) R(-3.22) K(-3.22) P(-4.22)
//

===============================
 SLIM 24
===============================
ID           Acetyltransf_1.clust.0.3.8
Center             2i79_FD_0
AvSimToCtr 0.467
AvRMSDToCtr 0.938 A
Size         19
NumDistinct 7
FracDDI            0
FracPeptides       0
FracIntra    0
Species            AGROBACTERIUM TUMEFACIENS (3), THERMUS THERMOPHILUS (1), PSEUDOMONAS AERUGINOSA (1), ENTEROCOCCUS
FAECALIS (1), STREPTOCOCCUS PNEUMONIAE TIGR4 (1)
Conservation       0.428571428571429

Members
      2ae6_AD_0 2ae6_BC_0 2ae6_CB_0 2ae6_DA_0 2ge3_AB_0 2ge3_BA_0 2ge3_DC_0 2ge3_CD_0 2vi7_AB_0 2vi7_BA_0
      2zxv_AC_0 2zxv_BD_0 2zxv_DB_0 2zxv_CA_0 2i79_AE_0 2i79_CB_0 2i79_BC_0 2i79_DF_0 2i79_EA_0

Peptides

PartnerDomains

Dist Members Intf   Alignment
      2i79_FD_0     T     D     T   S     L     D     G     I     L     R     Q     Q     E     R     G     A       Y
      I     E       F
      2ae6_AD_0                                                                     F     K     E     E     F       Y
      I             Y
      2ge3_AB_0                                 L                                   A     R     D     A     V       S
      I             Y
      2ge3_BA_0                           F     L                                   A     R     D     A     V       S
      I             Y
      2ge3_CD_0                 L   S     F     L                                   A     R     D     A     V       S
      I             Y
      2vi7_AB_0           R     V   L     Q     M                       R     Y     M     R     D     Y     A       V
      R             F
        2zxv_AC_0                                                                    L     R     K     N     R      R
                    F

Dist Members ResidueID Alignment
      2i79_FD_0   29    30    32      33    34    35    38    39    40    83   129   150   151   152   153   154
      155   156   157   161
      2ae6_AD_0                                                                      141   142   143   144   145
      146   147         151
      2ge3_AB_0                                   38                                 148   149   150   151   152
      153   154         158
      2ge3_BA_0                             37    38                                 148   149   150   151   152
      153   154         158
      2ge3_CD_0               35      36    37    38                                 148   149   150   151   152
      153   154         158
      2vi7_AB_0         32    34      35    36    37                      82   128   149   150   151   152   153
      154   155         159
      2zxv_AC_0                                                                      152   153   154   155   156
      157               163

Alignment Occupancy     0.142 0.285 0.428 0.428 0.571 0.714 0.142 0.142 0.142 0.285 0.285 1      1     1     1      1
      1     0.857 0.142 1
Gap in betw Columns     0     109,114     0     0     0     0     0     0     2,3

SLIM   RegEx        [AFQML][RKE][DKRE][ANGYE][VAFR][SYRV][IR].{2,3}[YF]
SLIM   Coverage           0.714285714285714
SLIM   PSSM Match Cutoff 25.5595271210213
SLIM   I=181997 Im=4564 Id=202 Idm=6
SLIM   PSSM p-value 0.15007636639868

PSSM Listing
Pos 0 F(4.060) A(3.160) M(3.122) Q(3.069) L(2.216) Y(1.126) V(1.104) I(0.560) S(0.335) E(0.220) R(-0.47) K(-0.47)
C(-0.57) W(-0.69) G(-0.76) T(-0.93) N(-1.09) H(-1.27) P(-1.43) D(-1.52)
Gap (0)
Pos 1 R(4.674) K(3.290) E(3.104) Q(1.219) D(0.186) N(0) H(-0.09) S(-0.60) T(-0.60) A(-1) M(-1.09) P(-1.60) G(-2)
Y(-2) L(-2.09) I(-3) V(-3) F(-3) W(-3) C(-3.09)
Gap (0)
Pos 2 D(5.445) E(3.256) K(3.129) R(3.112) Q(0.876) N(0.684) T(0.637) S(-0.09) H(-0.60) P(-1.09) G(-1.31) A(-1.44)
M(-1.87) Y(-2.44) L(-2.87) I(-3) V(-3) F(-3) C(-3.09) W(-3.44)
Gap (0)
Pos 3 Y(5.054) G(4.064) N(4.059) A(3.162) E(3.069) F(1.081) S(0.619) D(0.445) Q(0.356) H(0.283) W(0.100) T(-0.16)
K(-0.31) R(-0.72) C(-0.76) V(-1.31) P(-1.36) M(-1.36) I(-1.48) L(-1.48)
Gap (0)
Pos 4 F(4.057) V(3.156) R(3.060) A(2.778) I(2.181) Y(1.126) M(0.382) L(0.359) K(0.203) S(-0.09) Q(-0.58) C(-0.75)
W(-0.84) G(-1.09) E(-1.16) N(-1.28) H(-1.36) T(-1.44) P(-1.68) D(-2.44)
Gap (0)
Pos 5 Y(5.747) S(3.157) R(3.063) V(2.075) F(1.767) I(1.111) H(0.883) W(0.763) K(0.433) A(0.335) N(0.302) T(0.243)
Q(-0.06) M(-0.35) E(-0.46) L(-0.56) G(-0.75) D(-0.75) C(-1.36) P(-1.55)
Gap (0)
Pos 6 I(3.663) R(3.055) L(1.667) M(0.690) V(0.667) K(0.087) F(-0.32) Q(-0.85) A(-1.15) Y(-1.26) C(-1.30) N(-1.72)
E(-1.72) H(-1.72) S(-1.90) T(-1.90) P(-2.90) D(-2.90) W(-3.15) G(-3.42)
Gap (2,3)
Pos 7 Y(6.454) F(5.216) W(1.684) H(1.477) M(-0.44) I(-0.44) L(-0.44) V(-1) Q(-1.46) C(-2) S(-2) T(-2) A(-2) N(-2.31)
E(-2.31) R(-2.31) K(-2.31) G(-3) D(-3) P(-3.31)
//

===============================
 SLIM 25
===============================
ID           Actin.clust.0.15.0
Center             1nlv_AG_0
AvSimToCtr 0.612
AvRMSDToCtr 0.812 A
Size         22
NumDistinct 6
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            ORYCTOLAGUS CUNICULUS (3), HOMO SAPIENS (2), MUS MUSCULUS (1)
Conservation       0.5

Members
      1c0f_AS_0 1c0g_AS_0 1dej_AS_0 1d4x_AG_0 2ff3_BA_0 2ff6_AG_0 1nm1_AG_0 1nmd_AG_0 3ci5_AG_0 3cip_AG_0
      1mdu_BA_0 1mdu_ED_0 1eqy_AS_0 1esv_AS_0 1yag_AG_0 1yvn_AG_0 1p8z_AG_0 1h1v_AG_0 3daw_AB_0 2hmp_AB_0
      2hmp_BA_0 1ijj_AB_0

Peptides

PartnerDomains
      Actin (2hmp_AB_0,2hmp_BA_0,1ijj_AB_0)

Dist Members Intf   Alignment
      1nlv_AG_0     V     E     H   F     D     L     Y     L     Q     D     S     G     A     A     I     F    T
      V     Q       D     D     A   V     Q     R     G     F
      1h1v_AG_0                           N           N     Q     Q     D     V           A     A     I     L
      A     Q       D     E     P   V     Q     R
      3daw_AB_0                           E                       I     R     R     M     L     S     S          K
                                                E
      2hmp_AB_0           R     T   I                                   L           S           T
                                                M
        2hmp_BA_0                     G     R     T                                           L
                                                  Q
        1ijj_AB_0                                                                 H                 M           M
                                                                G

Dist Members ResidueID Alignment
      1nlv_AG_0   3     4     5       25    26    27    63      65    71    72    74    75    76    78    79    80
      81    82    83    85    86      92    93    94    96      124   125
      1h1v_AG_0                             429         465     467   473   474   476         478   480   481   482
      484   485   487   488   494     495   496   498
      3daw_AB_0                             210                       266   267   269   270   271   273   274
      276                                               296
      2hmp_AB_0         147   148     345                                   349         350         351
                                                  355
        2hmp_BA_0                     146   147   148                                         349
                                                  354
        1ijj_AB_0                                                                 440               444         447
                                                                463

Alignment Occupancy     0.166 0.333 0.333 0.5   0.666 0.333 0.333 0.333 0.5   0.666 0.666 0.5       0.666 0.833 0.5
      0.5   0.333 0.333 0.333 0.333 0.333 0.333 0.333 0.333 0.833 0.166 0.333
Gap in betw Columns     0     39,55 0     1     0     0     1     0     0     15

SLIM   RegEx        [QI][DRL].[HSRV][SMG][AL].[ASMT][IS][FML]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 18.3706337533997
SLIM   I=181997 Im=4940 Id=513 Idm=17
SLIM   PSSM p-value 0.070690392632135

PSSM Listing
Pos 0 Q(3.901) I(2.210) E(0.904) L(0.244) R(-0.08) K(-0.08) M(-0.24) V(-0.69)     S(-1.03) T(-1.03) N(-1.07) D(-1.07)
H(-1.07) A(-1.69) Y(-1.69) F(-1.69) P(-2.03) C(-2.55) W(-2.92) G(-3.03)
Gap (0)
Pos 1 D(4.901) R(3.210) L(2.211) V(1.215) E(0.970) K(0.319) M(0.269) I(0.228)     N(0.077) T(-0.01) Q(-0.21) S(-0.87)
H(-1.21) F(-1.65) A(-1.78) P(-1.87) G(-1.90) Y(-2.29) C(-2.45) W(-3.29)
Gap (1)
Pos 2 H(6.208) R(3.217) S(2.224) V(2.214) I(1.219) K(0.393) Y(0.291) N(0.077)     Q(-0.21) T(-0.35) A(-0.35) D(-0.42)
M(-0.51) E(-0.64) L(-0.68) G(-1.51) F(-1.87) C(-1.97) P(-2.04) W(-3.04)
Gap (0)
Pos 3 G(4.210) M(3.211) S(2.232) L(0.228) T(-0.03) A(-0.38) N(-0.69) I(-0.73)     Q(-1.03) K(-1.38) D(-1.44) V(-1.55)
E(-1.55) F(-1.62) R(-1.92) C(-2.03) P(-2.24) H(-2.24) Y(-2.38) W(-2.38)
Gap (0)
Pos 4 A(2.908) L(2.908) V(1.908) M(0.949) I(0.949) S(-0.05) C(-0.78) F(-0.97)     G(-1.08) T(-1.78) Q(-1.78) R(-1.78)
K(-1.78) Y(-1.78) P(-1.97) N(-1.97) E(-1.97) H(-2.78) W(-2.78) D(-2.97)
Gap (1)
Pos 5 M(3.218) A(2.932) S(2.353) T(2.275) L(0.335) G(-0.03) N(-0.26) D(-0.39) P(-0.41) Q(-0.47) I(-0.47) C(-0.65)
K(-0.65) E(-0.73) R(-1.18) H(-1.21) F(-1.35) Y(-1.88) V(-2.18) W(-2.35)
Gap (0)
Pos 6 I(2.902) S(2.213) L(0.910) M(-0.03) V(-0.07) A(-0.55) T(-0.69) N(-0.75) F(-1.03) C(-1.69) D(-1.69) E(-1.69)
Q(-1.69) K(-1.69) G(-1.75) Y(-1.92) P(-2.55) H(-2.55) R(-2.55) W(-3.69)
Gap (0)
Pos 7 F(4.213) M(3.263) L(2.351) Y(1.244) V(1.232) I(0.615) W(-0.62) Q(-1.62) C(-1.92) A(-1.92) S(-2.24) T(-2.24)
H(-2.38) R(-2.38) K(-2.38) N(-3.24) E(-3.24) P(-3.38) G(-3.92) D(-3.92)
//

===============================
 SLIM 26
===============================
ID           Acyl-CoA_dh_M.clust.0.2.0
Center             3mde_BA_2
AvSimToCtr 0.516
AvRMSDToCtr 0.892 A
Size         102
NumDistinct 18
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (5), ARABIDOPSIS THALIANA (3), FUSARIUM OXYSPORUM (3), RATTUS NORVEGICUS (2),
THERMUS THERMOPHILUS (2), THERMUS THERMOPHILUS HB8 (1), GEOBACILLUS KAUSTOPHILUS (1)
Conservation       0.294117647058824

Members
      1egc_AB_2   1egc_CD_2   1ege_BA_2   1egd_BA_2   3mdd_AB_2   3mdd_BA_2   3mde_AB_2   1udy_AB_2   1udy_CD_2   1t9g_AB_2
      2a1t_AB_2   1t9g_CD_2   2a1t_CD_2   1t9g_BA_2   2a1t_BA_2   1t9g_DC_2   1egd_CD_2   1egd_DC_2   1ege_CD_2   2pg0_AB_1
      2pg0_BA_1   2cx9_AB_2   2cx9_BA_2   2cx9_DC_2   1ivh_AB_2   1ivh_BA_2   1ivh_CD_2   1ivh_DC_2   1jqi_AB_1   1jqi_BA_1
      2vig_BA_1   2vig_AB_1   2vig_CD_1   2vig_GH_1   2vig_HG_1   2vig_DC_1   2vig_EF_1   1egc_DC_2   1ege_DC_2   2cx9_CD_2
      1rx0_AC_1   1rx0_CA_1   1rx0_DB_1   1rx0_BD_1   2z1q_AB_2   2z1q_BA_2   2jif_AC_1   2jif_BD_1   2jif_DB_1   2jif_CA_1
      2ix5_AB_1   2ix5_CD_1   2ix5_BA_1   2ix5_DC_1   1is2_AB_0   1is2_BA_0   1w07_AB_0   1w07_BA_0   2fon_AB_0   2fon_BA_0
      2eba_AD_2   2eba_IH_2   2eba_CE_2   2eba_EC_2   2eba_HI_2   2eba_DA_2   2wbi_AB_1   2wbi_BA_1   2c0u_AB_1   2c0u_DC_1
      2c0u_BA_1   2c0u_CD_1   2c12_AB_1   2c12_BA_1   3d9d_CD_1   3d9e_CD_1   3d9f_CD_1   2c12_DC_1   3d9g_AB_1   3d9e_AB_1
      3d9f_AB_1   3d9g_DC_1   3d9g_BA_1   3d9g_CD_1   3d9e_BA_1   3d9f_BA_1   3d9d_AB_1   3d9d_DC_1   3d9e_DC_1   3d9f_DC_1
      2reh_DC_1   3d9d_BA_1   2c12_FE_1   2reh_CD_1   2c12_CD_1   2c12_EF_1   2reh_AB_1   2zaf_BA_1   2zaf_CD_1   2reh_BA_1
      2zaf_AB_1   2zaf_DC_1

Peptides

PartnerDomains
      Acyl-CoA_dh_1
(3mde_BA_2,2pg0_AB_1,2cx9_AB_2,1ivh_AB_2,1jqi_AB_1,2vig_BA_1,1rx0_AC_1,2z1q_AB_2,2jif_AC_1,2ix5_AB_1,2ix5_CD_1,1is2
_AB_0,1w07_AB_0,2eba_AD_2,2wbi_AB_1,2c0u_AB_1,2c12_AB_1,2c12_BA_1)
      Acyl-CoA_dh_M (1is2_AB_0,1w07_AB_0,2c12_AB_1)
      HpaB (3mde_BA_2,2cx9_AB_2,2eba_AD_2)
      Acyl-CoA_dh_N (2c12_AB_1)
      Pectate_lyase_2 (2z1q_AB_2)

Dist Members Intf   Alignment
      3mde_BA_2     R     K     T   F     G     G     N     N
      2pg0_AB_1     R     T     A   F     G     G     Y     M
      2cx9_AB_2     R     E     A   F     G     G     Y     V
      1ivh_AB_2     R           A   F     G     G     N     I
      1jqi_AB_1     R     H     A   F     G     G     M     V
      2vig_BA_1     R     M     A   F     G     G     M     V
      1rx0_AC_1     R     K     Q   F     G     G     Y     L
      2z1q_AB_2     R     V     Q   F     G     G     Y     S
      2jif_AC_1     R     I     Q   F     G     G     V     T
      2ix5_AB_1     R     K     Q   F     G     G     N
      2ix5_CD_1     R     K     Q   F     G     G     N     L
      1is2_AB_0     R     R     Q               G     H     S
      1w07_AB_0     R     R     Q   F           G     H     L
      2eba_AD_2     R     S     T   F     G     G     S
      2wbi_AB_1     R     I     A   F     K     G     A     S
      2c0u_AB_1     D     T               S           K     A
      2c12_AB_1     D     T                     M     K     A
      2c12_BA_1     D     T               S     M     K     A

Dist Members ResidueID Alignment
      3mde_BA_2   281   282   283   284   285   353   354   357
      2pg0_AB_1   274   275   276   277   278   346   347   350
      2cx9_AB_2   274   275   276   277   278   346   347   350
      1ivh_AB_2   280         282   283   284   352   353   356
      1jqi_AB_1   673   674   675   676   677   745   746   749
      2vig_BA_1   297   298   299   300   301   369   370   373
      1rx0_AC_1   280   281   282   283   284   353   354   357
      2z1q_AB_2   289   290   291   292   293   375   376   379
      2jif_AC_1   319   320   321   322   323   391   392   395
      2ix5_AB_1   313   314   315   316   317   385   386
      2ix5_CD_1   313   314   315   316   317   385   386   389
      1is2_AB_0   307   308   309               398   399   402
      1w07_AB_0   310   311   312   313         401   402   405
      2eba_AD_2   270   271   272   273   274   342   343
      2wbi_AB_1   305   306   307   308   309   379   380   383
      2c0u_AB_1   302   303               307         380   383
      2c12_AB_1   302   303                     379   380   383
      2c12_BA_1   302   303               307   379   380   383
Alignment Occupancy       1     0.944 0.833 0.777 0.833 0.944 1   0.888
Gap in betw Columns       0     0     0     0     67,81 0     2

SLIM   RegEx        [RD][TKIRSEVHM][QAT]F[GSK]
SLIM   Coverage           0.666666666666667
SLIM   PSSM Match Cutoff 18.5227019603102
SLIM   I=181997 Im=4999 Id=126 Idm=3
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 R(4.817) D(4.209) K(1.827) Q(0.888) E(0.725) N(0.251) H(-0.11) T(-0.27)   S(-0.74) A(-1.11) M(-1.15) P(-1.74)
G(-1.74) Y(-2.11) L(-2.15) C(-3) I(-3) V(-3) F(-3) W(-3.11)
Gap (0)
Pos 1 H(5.112) K(3.534) R(2.910) T(2.541) E(2.231) M(2.190) I(2.000) S(1.391)   V(1.225) Q(0.541) L(0.385) D(0.284)
N(-0.07) P(-0.26) G(-0.31) Y(-0.54) A(-0.69) F(-1.32) C(-1.58) W(-2.66)
Gap (0)
Pos 2 Q(4.059) A(2.911) T(1.883) E(1.133) S(0.468) K(0.255) R(0.199) D(-0.30)   G(-0.37) N(-0.47) P(-0.56) M(-0.59)
H(-0.60) C(-0.93) Y(-1.59) L(-1.65) I(-1.85) V(-2.18) F(-2.53) W(-2.59)
Gap (0)
Pos 3 F(5.748) Y(2.748) W(0.748) M(-0.25) I(-0.25) L(-0.25) H(-1.25) V(-1.25)   C(-2.25) S(-2.25) T(-2.25) A(-2.25)
G(-3.25) N(-3.25) D(-3.25) E(-3.25) Q(-3.25) R(-3.25) K(-3.25) P(-4.25)
Gap (0)
Pos 4 G(5.594) K(2.133) S(1.915) T(0.774) A(-0.01) V(-0.37) R(-0.61) N(-0.80)   D(-0.97) E(-1.04) Q(-1.04) P(-1.88)
H(-1.88) W(-2.31) M(-2.35) C(-2.56) Y(-2.88) F(-2.97) L(-3.35) I(-3.50)
//

===============================
 SLIM 27
===============================
ID           Adaptin_N.clust.0.15.1
Center             2jkr_EM_0
AvSimToCtr 0.329
AvRMSDToCtr 2.529 A
Size         4
NumDistinct 4
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (3), RATTUS NORVEGICUS (1)
Conservation       0.75

Members
      2jkr_BU_0 2jkr_LB_1 2qmr_BD_5 2qmr_CA_1

Peptides
PartnerDomains
      Adaptin_N (2jkr_LB_1)
      Adap_comp_sub (2jkr_EM_0)

Dist Members Intf   Alignment
      2jkr_EM_0     R     T      S      E      L      L      P      T     N
      2jkr_LB_1           R                           S      T      P     V
      2qmr_BD_5     L     N             I      P                    A     L
      2qmr_CA_1     S     D             R      P      N             A

Dist Members ResidueID Alignment
      2jkr_EM_0   298   299   331       371    372    373    374    375   376
      2jkr_LB_1         528                           531    532    534   535
      2qmr_BD_5   172   173             174    177                  208   211
      2qmr_CA_1   165   166             170    171    173           208

Alignment Occupancy       0.75   1      0.25   0.75   0.75   0.75   0.5   1     0.75
Gap in betw Columns       0      0,71   0,2    0,1    0      0,1    0,2

SLIM   RegEx        [RIE].{0,2}[PL].{0,1}[SNL][TP].{0,1}[ATP].{0,2}[NLV]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 25.0905827472783
SLIM   I=181997 Im=10548 Id=230 Idm=5
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(3.620) R(3.620) I(2.615) Q(0.931) K(0.931) D(0.638) L(0.638) M(-0.21)          V(-0.35) N(-0.66) H(-0.66) S(-0.97)
T(-0.97) A(-1.28) F(-1.29) Y(-1.83) P(-1.97) C(-2.21) G(-2.62) W(-3.28)
Gap (0,2)
Pos 1 P(6.306) L(2.615) V(1.627) M(0.649) I(0.627) T(0.331) A(-1.28) F(-1.35)          S(-1.52) Q(-1.52) K(-1.52) N(-1.62)
E(-1.62) D(-1.66) C(-2.14) Y(-2.14) R(-2.28) H(-2.52) G(-2.62) W(-3.14)
Gap (0,1)
Pos 2 N(4.620) S(2.664) L(2.617) V(1.622) M(0.679) I(0.638) T(-0.03) D(-0.06)          A(-0.21) Q(-0.62) K(-0.62) E(-0.66)
G(-0.68) R(-0.97) F(-1.21) C(-1.62) H(-1.62) Y(-1.83) P(-1.97) W(-2.97)
Gap (0)
Pos 3 P(5.616) T(2.662) S(-0.25) D(-0.25) G(-0.33) N(-1.07) E(-1.07) Q(-1.07)          K(-1.07) H(-1.25) A(-1.69) R(-2.07)
M(-2.07) C(-2.25) V(-2.69) I(-3.07) L(-3.07) Y(-3.07) F(-3.25) W(-4.07)
Gap (0,1)
Pos 4 P(5.616) A(3.313) T(2.675) S(0.756) G(0.193) D(-0.17) C(-0.50) N(-0.64)          E(-0.64) Q(-0.64) K(-0.64) H(-1.04)
R(-1.17) M(-1.17) I(-1.46) L(-1.46) V(-2) Y(-2.17) F(-2.24) W(-3.17)
Gap (0,2)
Pos 5 N(4.613) V(2.927) L(2.663) I(1.928) M(0.940) S(-0.29) D(-0.36) A(-0.97)          F(-1.03) T(-1.14) Q(-1.14) K(-1.14)
R(-1.21) E(-1.21) G(-1.32) Y(-1.52) C(-1.62) H(-2.14) P(-2.52) W(-2.97)
//
===============================
 SLIM 28
===============================
ID           Adeno_shaft.clust.0.2.0
Center             1v1h_DF_1
AvSimToCtr 0.726
AvRMSDToCtr 0.343 A
Size         14
NumDistinct 4
FracDDI            0.25
FracPeptides       0
FracIntra    0
Species            HUMAN ADENOVIRUS 2 (3)
Conservation       1

Members
      1qiu_AC_0 1qiu_FE_0 1qiu_CB_0 1qiu_ED_0 1v1h_AC_1 1v1h_CB_1 1v1h_FE_1 1v1i_BA_1 1v1i_CB_1 1v1h_BA_1
      1v1h_ED_1 1qiu_BA_0 1qiu_DF_0 1v1i_AC_1

Peptides

PartnerDomains
      Fibritin_C (1v1h_DF_1)

Dist Members Intf   Alignment
      1v1h_DF_1     I     T     I   N       N     G     A     M     I     T     L     F     D     S     G     A     I
      T     I
      1qiu_AC_0           T     I           N     G     A     M     I     T     L     F     D     S     G     A     I
      T     I
      1qiu_CB_0     I     T     I           N     G     A     M     I     T     L     F     D     S     G     A     I
      T     I
      1qiu_BA_0     I     T     I   N       N     G     A     M     I     T     L     F           S     G     A     I
      T     I

Dist Members ResidueID Alignment
      1v1h_DF_1   357   359   365   368     370   371   372   373   374   375   381   383   384   386   387   388
      389   390   391
      1qiu_AC_0         359   365           370   371   372   373   374   375   381   383   384   386   387   388
      389   390   391
      1qiu_CB_0   357   359   365           370   371   372   373   374   375   381   383   384   386   387   388
      389   390   391
      1qiu_BA_0   357   359   365   368     370   371   372   373   374   375   381   383         386   387   388
      389   390   391
Alignment Occupancy      0.75   1      1    0.5   1   1    1     1     1     1     1     1     0.75   1    1     1
      1     1     1
Gap in betw Columns      1      5      2    1     0   0    0     0     0     5     1     0     1      0    0     0
      0     0

SLIM   RegEx        L.FD.SGAITI
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 18.7123179275482
SLIM   I=181997 Im=7799 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (1)
Pos 1 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 2 D(5.712) E(1.712) T(0.712) N(0.712) S(-0.28) Q(-0.28) P(-1.28) G(-1.28) H(-1.28) K(-1.28) A(-2.28) R(-2.28)
C(-3.28) M(-3.28) I(-3.28) V(-3.28) F(-3.28) Y(-3.28) L(-4.28) W(-4.28)
Gap (1)
Pos 3 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 4 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 5 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (0)
Pos 6 I(4) L(2) M(1) V(1) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) P(-3) N(-3) D(-3) E(-3) Q(-3) H(-3) R(-3) K(-3) W(-3)
G(-4)
Gap (0)
Pos 7 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 8 I(4) L(2) M(1) V(1) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) P(-3) N(-3) D(-3) E(-3) Q(-3) H(-3) R(-3) K(-3) W(-3)
G(-4)
//

===============================
 SLIM 29
===============================
ID          Aldolase_II.clust.0.25.2
Center            1gt7_AB_0
AvSimToCtr 0.728
AvRMSDToCtr 0.521 A
Size         39
NumDistinct 8
FracDDI             0.875
FracPeptides        0
FracIntra    0
Species             THERMUS THERMOPHILUS HB8 (7), ESCHERICHIA COLI (1)
Conservation        0.875

Members
      1gt7_CD_0   1gt7_QR_0     1gt7_BC_0   1gt7_PM_0   1gt7_MN_0   1gt7_EF_0   1gt7_IJ_0   1gt7_FG_0   1gt7_NO_0 1gt7_JK_0
      1gt7_OP_0   1gt7_RS_0     1gt7_GH_0   1gt7_ST_0   1gt7_DA_0   1gt7_HE_0   1gt7_TQ_0   1gt7_LI_0   1gt7_KL_0 2v9n_AC_0
      2v9n_CB_0   2v9n_BD_0     2v9n_DA_0   2uyv_DA_0   2v9g_DA_0   2v9g_AB_0   2uyv_AB_0   2uyv_CD_0   2uyv_BC_0 2v9g_BC_0
      2v9g_CD_0   2flf_AD_0     2flf_CB_0   2flf_GF_0   2flf_HG_0   2flf_FE_0   2flf_BA_0   2flf_DC_0   2flf_EH_0

Peptides

PartnerDomains
      Aldolase_II (1gt7_AB_0,2flf_AD_0,2flf_CB_0,2flf_HG_0,2flf_FE_0,2flf_DC_0,2flf_EH_0)

Dist Members Intf   Alignment
      1gt7_AB_0     K     D         K       E     G       S     T       E       V     D       E     F       G     L     D     T     K
      Q     V       K     V         M       G     M       K     Q       T       I     E       A     L       R     F
      2flf_AD_0                                   L       D     L       E                           Y       G           T     T     E
      Q     I       Y       H       W
      2flf_CB_0                                   L       D     L       E             L             Y       G           T     T     E
      Q     I       Y       H
      2flf_HG_0     Q       D       Q                     D     L       E             L             Y       G           T     T     E
      Q     I       Y       H
      2flf_FE_0     Q       D       Q             L       D     L       E             L             Y                   T           E
      Q     I       Y       H
      2flf_BA_0                                   L       D     L               Y                                       T     T     E
      Q     I       Y       H       W
      2flf_DC_0                     Q             L       D     L       E       Y                                                   E
      Q     I       Y       H
      2flf_EH_0     Q       D       Q                     D     L       E                                               T           E
      Q     I       Y       H       W

Dist Members ResidueID Alignment
      1gt7_AB_0   15    19    23            167   168     169   170     171     175   222     223   225     226   227   229   230
      233   236   237   240   241           244   246     247   248     249     250   251     255   258     259   262   263
      2flf_AD_0                                   107     108   109     110                         170     171         174   175
      178   181   182   185   186           189
      2flf_CB_0                                   107     108   109     110           167           170     171         174   175
      178   181   182   185   186
        2flf_HG_0   11    15    19                108   109   110           167       170   171         174   175
        178   181   182   185   186
        2flf_FE_0   11    15    19          107   108   109   110           167       170               174
        178   181   182   185   186
        2flf_BA_0                           107   108   109           114                               174   175
        178   181   182   185   186   189
        2flf_DC_0               19          107   108   109   110     114
        178   181   182   185   186
        2flf_EH_0   11    15    19                108   109   110                                       174
        178   181   182   185   186   189

Alignment Occupancy       0.5   0.5   0.625 0.125 0.75 1      1     0.875 0.375 0.5   0.125 0.625 0.5   0.125 0.875
      0.625 1     1       1     1     1      0.5  0.125 0.125 0.125 0.125 0.125 0.125 0.125 0.125 0.125 0.125 0.125
Gap in betw Columns       3     3     87,144      0     0     0     50,53 2     0     2     0     2     2     0     2
      0     2

SLIM   RegEx        [LD]..[YF]G..[TD]T..[EK]..Q[IV]..[YK][HV]..[WM]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 21.0419438462968
SLIM   I=181997 Im=5134 Id=15 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 D(3.920) L(3.019) V(2.019) M(1.021) I(1.021) E(-0.05) T(-0.94) F(-0.96) N(-1.02) S(-1.73) Q(-1.73) A(-1.86)
C(-1.93) Y(-1.93) K(-2.33) R(-2.69) P(-2.73) H(-2.73) W(-2.93) G(-2.94)
Gap (2)
Pos 1 Y(6.311) F(4.102) W(1.394) H(1.319) M(-1.17) I(-1.17) L(-1.17) V(-1.47) Q(-1.65) C(-2.47) S(-2.47) T(-2.47)
A(-2.47) N(-2.60) E(-2.60) R(-2.60) K(-2.60) G(-3.47) D(-3.47) P(-3.60)
Gap (0)
Pos 2 G(5.306) T(0.306) S(-0.69) A(-0.69) V(-0.69) D(-1.69) P(-2.69) N(-2.69) E(-2.69) Q(-2.69) H(-2.69) R(-2.69)
K(-2.69) W(-2.69) C(-3.69) M(-3.69) F(-3.69) Y(-3.69) I(-4.69) L(-4.69)
Gap (2)
Pos 3 D(3.960) T(3.720) S(0.771) P(0.734) G(0.734) E(0.514) N(0.085) Q(-0.13) H(-0.22) K(-0.22) A(-1.22) R(-1.22)
C(-1.26) M(-1.26) I(-2.22) V(-2.22) F(-2.22) Y(-2.22) L(-2.26) W(-3.22)
Gap (0)
Pos 4 T(3.529) S(0.529) P(0.529) G(0.529) D(0.529) N(-0.47) E(-0.47) Q(-0.47) H(-0.47) K(-0.47) C(-1.47) A(-1.47)
R(-1.47) M(-1.47) I(-2.47) L(-2.47) V(-2.47) F(-2.47) Y(-2.47) W(-3.47)
Gap (2)
Pos 5 E(4.869) K(3.041) Q(1.917) D(1.873) R(0.587) S(0) T(0) N(0) H(-0.08) P(-1) A(-1) M(-1.80) G(-2) Y(-2) L(-2.80)
I(-3) V(-3) F(-3) W(-3) C(-3.80)
Gap (2)
Pos 6 Q(5) E(2) R(1) K(1) S(0) T(0) N(0) D(0) H(0) M(0) P(-1) A(-1) Y(-1) G(-2) L(-2) V(-2) W(-2) C(-3) I(-3) F(-3)
Gap (0)
Pos 7 I(3.917) V(2.219) L(1.917) M(1) F(-0.08) A(-0.80) C(-1) Y(-1) S(-2) T(-2) P(-2.80) E(-2.80) Q(-2.80) K(-2.80)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.80)
Gap (2)
Pos 8 Y(6.866) K(2.926) F(2.866) H(1.873) W(1.867) R(0.041) Q(-0.41) E(-0.78) M(-1) L(-1.08) I(-1.11) V(-1.11) S(-
1.41) T(-1.41) N(-1.41) A(-1.80) C(-2.08) P(-2.41) D(-2.41) G(-2.80)
Gap (0)
Pos 9 H(7.866) V(1.937) Y(1.873) I(0.937) N(0.869) D(0.869) T(-0.11) E(-0.11) Q(-0.11) R(-0.12) M(-0.78) L(-0.95)
F(-1) S(-1.08) K(-1.08) A(-1.41) P(-2) G(-2.08) W(-2.08) C(-2.41)
Gap (2)
Pos 10 W(10.01) M(2.927) Y(1.035) F(0.134) L(-0.02) I(-1.02) Q(-1.73) C(-2.33) H(-2.69) S(-2.73) T(-2.73) A(-2.73)
R(-2.73) K(-2.73) G(-2.86) E(-3.33) V(-3.33) P(-3.73) N(-3.73) D(-4.33)
//

===============================
 SLIM 30
===============================
ID           Alpha_adaptinC2.clust.0.2.2
Center             1om9_BQ_0
AvSimToCtr 0.553
AvRMSDToCtr 0.731 A
Size         5
NumDistinct 4
FracDDI            0
FracPeptides       0.75
FracIntra    0
Species            HOMO SAPIENS (1)
Conservation       1

Members
      1om9_AP_0 1p4u_AB_0 2dwx_AP_0 2dwx_CQ_0 2dwy_DA_0

Peptides
      1om9-Q 1p4u-B 2dwx-P

PartnerDomains

Dist Members Intf Alignment
      1om9_BQ_0   D     F     G     G      F     E     A     A     E
      1p4u_AB_0         F     G            L     V           A
      2dwx_AP_0   G     W     N     S      F     Q     S     S
      2dwy_DA_0               Q            Y     N     E     M

Dist Members ResidueID Alignment
      1om9_BQ_0   4     5     6     7      8     9     10    11    12
      1p4u_AB_0         0     1            3     4           6
      2dwx_AP_0   -1    0     1     2      3     4     5     6
      2dwy_DA_0               619          621   622   623   624
Alignment Occupancy       0.5   0.75   1    0.5   1     1    0.75   1   0.25
Gap in betw Columns       0     0      0    0     0     0    0

SLIM   RegEx        [DG][FW][GQN][SG][FYL][QNEV][SAE][ASM]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 21.7053254522319
SLIM   I=181997 Im=5364 Id=83 Idm=3
SLIM   PSSM p-value 0.214890201054912

PSSM Listing
Pos 0 G(4.614) D(4.614) E(0.631) T(0.306) N(-0.33) S(-0.69) A(-1.25) Q(-1.25)   V(-1.33) P(-2.07) H(-2.07) K(-2.07)
R(-2.69) W(-3.25) C(-3.69) M(-3.69) F(-3.69) Y(-3.69) I(-4.07) L(-4.69)
Gap (0)
Pos 1 W(9.613) F(5.310) Y(2.475) M(-0.52) L(-0.62) I(-0.66) H(-1.52) V(-1.62)   C(-2.28) S(-2.52) T(-2.52) A(-2.52)
G(-2.83) Q(-2.83) E(-3.28) R(-3.28) K(-3.28) N(-3.52) D(-3.52) P(-4.28)
Gap (0)
Pos 2 G(5.308) N(4.616) Q(3.622) E(0.772) T(0.620) S(0.357) D(0.107) R(-0.00)   K(-0.00) A(-0.46) V(-0.60) H(-0.89)
M(-1.17) P(-1.64) Y(-1.89) W(-2.24) L(-2.89) C(-3) F(-3) I(-3.37)
Gap (0)
Pos 3 G(4.616) S(2.631) T(0.306) A(-0.07) N(-0.33) D(-1.07) E(-1.25) Q(-1.25)   K(-1.25) V(-1.25) P(-2.07) H(-2.07)
R(-2.07) C(-2.25) M(-2.25) F(-3.07) Y(-3.07) W(-3.07) I(-3.25) L(-3.25)
Gap (0)
Pos 4 Y(5.650) F(5.332) L(2.656) V(1.667) W(1.175) M(0.891) I(0.891) H(0.714)   C(-1.64) A(-1.64) Q(-1.89) S(-2) T(-2)
R(-2.37) K(-2.37) N(-2.64) E(-2.64) G(-3.17) D(-3.17) P(-3.37)
Gap (0)
Pos 5 N(4.618) E(3.669) Q(3.669) V(2.617) I(1.621) D(1.025) K(0.496) S(0.193)   R(0.175) M(-0.00) T(-0.24) L(-0.30)
H(-0.50) A(-0.75) G(-1.10) P(-1.37) Y(-1.37) F(-2.04) C(-2.10) W(-2.75)
Gap (0)
Pos 6 E(3.622) S(2.679) A(2.668) Q(0.783) D(0.756) T(0.021) N(0.021) K(0.021)   G(-0.62) R(-0.83) H(-0.97) C(-1.05)
P(-1.28) M(-1.52) I(-1.97) L(-1.97) Y(-2.28) V(-2.52) F(-2.52) W(-3.28)
Gap (0)
Pos 7 M(3.621) A(3.334) S(2.714) L(0.725) T(-0.04) N(-0.10) I(-0.10) G(-0.27)   C(-0.37) Q(-0.37) K(-0.64) E(-0.75)
R(-1) F(-1.04) D(-1.10) P(-1.17) H(-1.64) Y(-1.64) V(-2) W(-2.04)
//

===============================
 SLIM 31
===============================
ID          Amidohydro_1.clust.0.2.3
Center            3feq_ON_0
AvSimToCtr 0.534
AvRMSDToCtr 0.757 A
Size        39
NumDistinct 4
FracDDI             1
FracPeptides        0
FracIntra    0
Species             UNKNOWN (3), UNIDENTIFIED (1)
Conservation        0.75

Members
      2r8c_AG_0   2r8c_DB_0   2r8c_HE_0   2r8c_BH_0   2r8c_CA_0   2r8c_ED_0   2r8c_GF_0   2r8c_FC_0   3feq_AG_0 3feq_KI_0
      3feq_LJ_0   3feq_BH_0   3feq_ML_0   3feq_HE_0   3feq_JP_0   3feq_PM_0   3feq_NK_0   3feq_DB_0   3feq_ED_0 3feq_IO_0
      3feq_CA_0   3feq_FC_0   3feq_GF_0   3be7_AG_0   3be7_DB_0   3be7_ED_0   3dug_AG_0   3dug_DB_0   3dug_BH_0 3dug_CA_0
      3dug_ED_0   3dug_GF_0   3be7_BH_0   3be7_CA_0   3be7_FC_0   3be7_HE_0   3be7_GF_0   3dug_FC_0   3dug_HE_0

Peptides

PartnerDomains
      Amidohydro_1 (3feq_ON_0,2r8c_AG_0,2r8c_BH_0,3be7_AG_0)

Dist Members Intf   Alignment
      3feq_ON_0     W     E       R       L     R       E     I       Q       K     G       E     E       A     A     N
      2r8c_AG_0     Y     D       R       R     R       E     L       Q       M     G       E                   R
      2r8c_BH_0     Y     D       R       R     R       E     L       Q       M     G       E     Q             R
      3be7_AG_0           W       R       K     R       K     R       K       Y     G       E             N     H

Dist Members ResidueID Alignment
      3feq_ON_0   111   170   173         174   177     178   180     181     182   183     218   220     221   222   223
      2r8c_AG_0   111   173   176         177   180     181   183     184     185   186     221                 225
      2r8c_BH_0   111   173   176         177   180     181   183     184     185   186     221   223           225
      3be7_AG_0         164   167         168   171     172   174     175     176   177     212           215   216

Alignment Occupancy       0.75 1          1     1       1     1       1       1     1       1     1       0.5   0.5   1     0.25
Gap in betw Columns       54,61 2         0     2       0     1       0       0     0       34    1       0     0

SLIM   RegEx        [DWE]..R[RKL]..R[EK].[LRI][QK][MKY]G
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 23.9709128690852
SLIM   I=181997 Im=7886 Id=13 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 W(9.613) D(5.315) E(3.708) Q(0.867) Y(0.645) T(0.483) N(0.478) K(-0.13) S(-0.27) F(-0.33) H(-0.75) R(-1.10)
P(-1.27) G(-1.37) A(-1.75) M(-1.89) C(-2.75) L(-2.89) I(-3) V(-3)
Gap (2)
Pos 1 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 2 R(4.331) K(3.709) L(2.621) V(1.621) M(0.752) Q(0.728) I(0.633) E(0.175) N(-0.27) H(-0.50) S(-0.75) T(-0.75)
A(-1) F(-1.24) Y(-1.64) P(-1.75) D(-1.80) C(-2.04) G(-2.24) W(-2.64)
Gap (2)
Pos 3 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 4 E(4.718) K(3.667) Q(1.827) D(1.728) R(0.954) S(0) T(0) N(0) H(-0.17) P(-1) A(-1) M(-1.64) G(-2) Y(-2) L(-2.64)
I(-3) V(-3) F(-3) W(-3) C(-3.64)
Gap (1)
Pos 5 R(3.615) L(3.373) I(2.853) V(2.373) M(1.496) K(0.656) F(-0.27) Q(-0.27) A(-1) Y(-1.17) C(-1.24) N(-1.24) E(-
1.24) H(-1.24) S(-1.64) T(-1.64) W(-2.37) P(-2.64) D(-2.89) G(-3.04)
Gap (0)
Pos 6 Q(4.718) K(3.667) E(1.827) R(1.357) S(0) T(0) N(0) D(-0.17) H(-0.17) M(-0.17) P(-1) A(-1) Y(-1.17) G(-2) L(-2)
V(-2.17) W(-2.17) C(-3) I(-3) F(-3)
Gap (0)
Pos 7 Y(5.614) M(4.309) K(3.619) F(1.710) L(1.340) R(0.725) W(0.714) H(0.696) I(0.380) Q(0.240) E(-0.24) S(-0.75)
T(-0.75) N(-1.04) A(-1.17) C(-1.46) P(-1.75) V(-1.75) D(-2.04) G(-2.64)
Gap (0)
Pos 8 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
//

===============================
 SLIM 32
===============================
ID           Ank.clust.0.15.2
Center             1nfi_FA_0
AvSimToCtr 0.400
AvRMSDToCtr 1.814 A
Size         6
NumDistinct 5
FracDDI            0.2
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (3), MUS MUSCULUS (2)
Conservation       0.6

Members
      1k3z_DA_0 1oy3_DC_0 1nfi_EC_0 1oy3_DC_1 1s70_BA_3 1s70_BA_4

Peptides

PartnerDomains
      TIG (1k3z_DA_0)
Dist Members Intf   Alignment
      1nfi_FA_0     D     R     R     I     K
      1k3z_DA_0     K     R     R     T
      1oy3_DC_0     T     Y     T     F     I
      1s70_BA_3     K           Y     Q     Y
      1s70_BA_4     K           A     K     Y

Dist Members ResidueID Alignment
      1nfi_FA_0   294   295   297     298   301
      1k3z_DA_0   301   302   304     305
      1oy3_DC_0   305   306   308     309   312
      1s70_BA_3   304         305     306   307
      1s70_BA_4   302         303     304   305

Alignment Occupancy       1     0.6   1     1     0.8
Gap in betw Columns       0     1     0     0,2

SLIM   RegEx        [KTD][RY].[RATY][FQTKI].{0,2}[YIK]
SLIM   Coverage           0.6
SLIM   PSSM Match Cutoff 20.5635316960761
SLIM   I=181997 Im=6535 Id=1069 Idm=27
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 K(4.492) D(4.399) T(2.490) R(1.511) E(1.196) Q(0.708) S(0.295) N(0.295)   P(-0.17) G(-0.35) H(-0.70) A(-1.13)
M(-1.18) Y(-2.13) C(-2.17) L(-2.18) I(-2.70) V(-2.70) F(-2.70) W(-3.13)
Gap (0)
Pos 1 Y(5.390) R(4.084) F(1.395) K(1.092) H(0.630) W(0.403) Q(0.149) N(-0.85)   E(-0.85) M(-1.51) S(-1.74) T(-1.74)
A(-1.74) L(-2.05) I(-2.36) V(-2.36) P(-2.74) G(-2.74) D(-2.74) C(-3.05)
Gap (1)
Pos 2 Y(5.391) R(4.086) T(2.413) A(2.413) F(1.408) K(1.180) H(0.744) W(0.417)   Q(0.360) S(0.232) G(-0.21) N(-0.35)
E(-0.35) P(-0.38) D(-0.45) M(-1) C(-1.13) L(-1.47) I(-1.63) V(-1.91)
Gap (0)
Pos 3 F(4.393) Q(3.415) K(3.415) T(2.431) I(2.412) Y(1.439) E(0.807) R(0.749)   L(0.564) M(0.086) S(-0.00) D(-0.17)
P(-0.35) V(-0.38) N(-0.47) G(-0.49) W(-0.50) H(-0.58) A(-1.13) C(-1.63)
Gap (0,2)
Pos 4 Y(6.083) K(3.392) I(2.404) F(2.109) H(1.111) W(1.090) L(0.502) R(0.433)   M(-0.26) Q(-0.35) V(-0.35) E(-0.49)
S(-1.26) T(-1.26) N(-1.33) A(-1.60) C(-1.98) P(-2.26) D(-2.26) G(-2.98)
//

===============================
 SLIM 33
===============================
ID          Apocytochr_F_C.clust.0.15.0
Center            2e74_CB_0
AvSimToCtr 0.342
AvRMSDToCtr 1.621   A
Size         7
NumDistinct 5
FracDDI             0.6
FracPeptides        0
FracIntra    0
Species             MASTIGOCLADUS LAMINOSUS (3)
Conservation        1

Members
      1vf5_CB_0 1vf5_PO_0 2zt9_CB_0 1vf5_CD_0 1vf5_PQ_0 2e74_CD_0 2zt9_CD_0

Peptides

PartnerDomains
      CytB6-F_Fe-S (1vf5_CD_0,2e74_CD_0,2zt9_CD_0)

Dist Members Intf   Alignment
      2e74_CB_0     M     A     T     L     E     P     P     N     D     L     Y     V    P    V    M    G     F
      A     V       A     V     L     D     P     M     L
      2zt9_CB_0           A     T     H     E     P     P     N     D     L     Y     V    P    I    M    G     F
      A     V       A     V     L     D     P     M     L
      1vf5_CD_0                                         M     N           L     A     F    T    V
      2e74_CD_0                                         R     M     N     L     A     F    T    V    G    V     G
      A
      2zt9_CD_0                                                     N     L     T     F    T    V         V

Dist Members ResidueID Alignment
      2e74_CB_0   1     2     3       4     29    30    33    34    35    37    38    39   41   42   45   46
      48    49    52    53    56      57    58    59    61    73
      2zt9_CB_0         2     3       4     29    30    33    34    35    37    38    39   41   42   45   46
      48    49    52    53    56      57    58    59    61    73
      1vf5_CD_0                                         19    20          22    23    24   26   27
      2e74_CD_0                                         16    19    20    22    23    24   26   27   29   30
      33    34
      2zt9_CD_0                                                     20    22    23    24   26   27        30

Alignment Occupancy       0.2   0.4   0.4   0.4   0.4   0.4   0.8   0.8   0.8   1     1    1    1    1    0.6
      0.8   0.6   0.6     0.4   0.4   0.4   0.4   0.4   0.4   0.4   0.4
Gap in betw Columns       0,2   0     1     0     0     1     0     1,2   0     1,2   0

SLIM RegEx        [PMR].{0,2}[NM][ND].L[AYT][FV].[TP][VI].{1,2}[MG][GV].{1,2}[FG]A
SLIM Coverage           0.6
SLIM PSSM Match Cutoff 28.9248412211665
SLIM I=181997 Im=3762 Id=0 Idm=0
SLIM PSSM p-value 1

PSSM Listing
Pos 0 P(6.083) R(3.394) M(3.394) K(0.529) L(0.421) T(0.210) Q(-0.11) I(-0.55) N(-0.98) E(-0.98) S(-1.22) A(-1.22)
H(-1.26) F(-1.52) D(-1.69) Y(-2.11) C(-2.26) G(-2.39) V(-2.39) W(-2.39)
Gap (0,2)
Pos 1 N(5.489) M(3.393) S(0.533) D(0.495) L(0.410) Q(-0.22) T(-0.39) R(-0.39) K(-0.39) E(-0.46) G(-0.49) I(-0.55)
H(-1.39) F(-1.47) A(-1.86) Y(-1.86) P(-2.22) C(-2.26) W(-2.47) V(-2.86)
Gap (0)
Pos 2 N(5.090) D(5.090) E(1.210) S(0.396) T(0.396) Q(-0.22) G(-0.60) K(-0.60) R(-0.78) H(-1.22) P(-1.60) A(-2.22)
M(-2.60) Y(-2.60) C(-3.22) I(-3.22) V(-3.22) F(-3.22) L(-3.60) W(-4.22)
Gap (1)
Pos 3 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 4 Y(6.083) A(3.089) T(2.408) F(2.093) H(1.166) W(1.093) S(0.521) G(-0.03) P(-0.34) D(-0.48) C(-0.63) Q(-0.70)
N(-0.91) E(-0.91) K(-0.91) M(-1) I(-1.13) L(-1.13) R(-1.29) V(-1.47)
Gap (0)
Pos 5 F(5.489) V(3.093) Y(2.501) I(2.155) M(0.523) L(0.523) W(0.501) A(-0.73) H(-1.42) C(-1.47) S(-2) T(-2) E(-2.47)
Q(-2.47) K(-2.47) P(-2.73) G(-3) N(-3) D(-3) R(-3)
Gap (1)
Pos 6 P(6.087) T(3.521) S(0.575) D(0.575) G(0.521) N(-0.29) E(-0.29) Q(-0.29) K(-0.29) H(-0.42) A(-1) R(-1.29) M(-
1.29) C(-1.42) V(-2) I(-2.29) L(-2.29) Y(-2.29) F(-2.42) W(-3.29)
Gap (0)
Pos 7 V(3.789) I(3.295) L(1.295) M(1) A(-0.13) F(-0.70) C(-1) Y(-1) S(-2) T(-2) P(-2.13) E(-2.13) Q(-2.13) K(-2.13)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.13)
Gap (1,2)
Pos 8 G(4.390) M(4.083) L(1.084) I(0.087) T(-0.36) Q(-0.85) F(-0.89) S(-1.05) A(-1.05) V(-1.36) R(-1.74) K(-1.74)
W(-1.74) C(-1.85) Y(-1.85) D(-2.36) P(-2.51) N(-2.51) E(-2.51) H(-2.51)
Gap (0)
Pos 9 G(5.083) V(3.101) I(2.084) T(0.132) M(0.101) L(0.090) A(-0.22) S(-0.78) C(-1.78) D(-1.78) F(-1.78) Y(-1.78)
P(-2.22) E(-2.22) Q(-2.22) K(-2.22) N(-2.60) H(-2.60) R(-2.60) W(-2.60)
Gap (1,2)
Pos 10 F(5.083) G(4.390) Y(2.084) W(0.108) T(-0.51) M(-0.89) I(-0.90) L(-0.90) V(-1.05) S(-1.36) A(-1.36) H(-1.74)
D(-2.36) C(-2.74) N(-3.05) E(-3.05) Q(-3.05) R(-3.05) K(-3.05) P(-3.36)
Gap (0)
Pos 11 A(3.489) S(0.489) C(-0.51) G(-0.51) T(-1.51) P(-1.51) N(-1.51) E(-1.51) Q(-1.51) R(-1.51) K(-1.51) M(-1.51)
I(-1.51) L(-1.51) D(-2.51) H(-2.51) V(-2.51) F(-2.51) Y(-2.51) W(-3.51)
//

===============================
 SLIM 34
===============================
ID          Arf.clust.0.2.5
Center              2fa9_BA_0
AvSimToCtr 0.336
AvRMSDToCtr 0.872   A
Size         10
NumDistinct 4
FracDDI             0.75
FracPeptides        0
FracIntra    0
Species             CRICETULUS GRISEUS (3), HOMO SAPIENS (1)
Conservation        0.75

Members
      1f6b_AB_0 2fa9_AB_0 2fmx_AB_0 2gao_BA_0 1f6b_BA_0 2fmx_BA_0 2gao_AB_0 1ksg_AB_0 1ksh_AB_0 1ksj_AB_0

Peptides

PartnerDomains
      Arf (2fa9_BA_0,1f6b_AB_0,2fmx_AB_0)
      Miro (2fa9_BA_0)
      Ras (2fa9_BA_0)

Dist Members Intf Alignment
      2fa9_BA_0   K     T         S      E     E      L     T     I     A    T     F      V      N      Y
      1f6b_AB_0                          T     S      E     E     L                                     N
      2fmx_AB_0                                S      E     E     L     T
      1ksg_AB_0                   T      N     T      W     Q     S

Dist Members ResidueID Alignment
      2fa9_BA_0   46    60    61         62    63     64    65    66    67   70    74     85     88     89
      1f6b_AB_0                          60    61     62    63    64                                    88
      2fmx_AB_0                                61     62    63    64    65
      1ksg_AB_0               102        103   104    105   106   107

Alignment Occupancy        0.25   0.25   0.5   0.75   1     1     1     1    0.5   0.25   0.25   0.25   0.25   0.5
Gap in betw Columns        0      0      0     0      0     0     16

SLIM   RegEx        [ST][TNE][STE][EWL][EQT][LSI][AT]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 20.1775457633646
SLIM   I=181997 Im=5358 Id=186 Idm=5
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 S(2.662) T(2.662) G(-0.07) N(-0.07) D(-0.07) P(-0.25) A(-0.25) E(-0.69) Q(-0.69) K(-0.69) H(-1.07) C(-1.69)
R(-1.69) M(-1.69) I(-2.69) L(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
Gap (0)
Pos 1 N(4.618) E(3.627) T(2.649) D(1.165) Q(0.853) S(0.475) K(0.165) G(-0.03) P(-0.21) H(-0.52) R(-0.52) A(-1.52)
M(-1.83) C(-2.21) Y(-2.28) I(-2.83) L(-2.83) V(-2.83) F(-2.83) W(-3.52)
Gap (0)
Pos 2 E(3.633) S(3.340) T(2.725) D(1.107) Q(0.954) N(0.620) A(0.433) K(0.357) G(0.193) P(-0.04) H(-0.37) R(-0.64)
M(-1.17) C(-1.27) Y(-2) I(-2.17) L(-2.17) V(-2.17) F(-2.17) W(-3)
Gap (0)
Pos 3 W(9.613) E(4.307) L(2.617) V(1.621) Q(1.325) D(1.309) M(0.696) Y(0.696) I(0.633) K(0.340) F(-0.04) S(-0.60)
T(-0.60) H(-0.60) R(-0.60) N(-0.65) A(-1.24) P(-1.60) C(-2.00) G(-2.24)
Gap (0)
Pos 4 E(4.334) Q(3.714) T(2.667) D(1.531) K(0.827) S(0.357) R(0.240) N(0) H(0) P(-0.04) G(-0.24) M(-0.89) A(-1) Y(-
1.64) C(-2.17) L(-2.37) V(-2.37) I(-2.64) F(-2.64) W(-2.64)
Gap (0)
Pos 5 L(3.373) I(2.855) S(2.621) V(2.375) M(1.496) A(-0.04) F(-0.24) T(-0.24) N(-0.33) C(-1) Q(-1.10) K(-1.10) Y(-
1.17) E(-1.24) D(-1.30) G(-1.33) R(-1.75) P(-2.04) H(-2.04) W(-2.37)
Gap (0)
Pos 6 T(2.620) A(2.620) S(0.306) G(-0.07) P(-0.25) D(-0.33) C(-1.07) N(-1.07) E(-1.07) Q(-1.07) K(-1.07) H(-1.25)
R(-1.69) M(-1.69) I(-2.07) L(-2.07) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
//

===============================
 SLIM 35
===============================
ID           Arg_repressor.clust.0.15.0
Center             1b4a_DC_0
AvSimToCtr 0.350
AvRMSDToCtr 1.460 A
Size         11
NumDistinct 5
FracDDI            1
FracPeptides       0
FracIntra    0
Species            BACILLUS SUBTILIS (3), GEOBACILLUS STEAROTHERMOPHILUS (2)
Conservation       0.6

Members
      1b4a_AF_0 1b4a_FA_0 1b4a_CD_0 1f9n_CD_0 1f9n_FA_0 1b4a_BE_0 1b4a_EB_0 1f9n_AF_0 1f9n_DC_0 1f9n_BE_0
      1f9n_EB_0

Peptides

PartnerDomains
      Arg_repressor_C (1b4a_DC_0,1b4a_FA_0,1f9n_CD_0,1f9n_AF_0,1f9n_BE_0)
      Arg_repressor (1b4a_FA_0,1f9n_CD_0)
Dist Members Intf   Alignment
      1b4a_DC_0     L     V     D    V      F     I    K     L     P     N     L     L
      1b4a_FA_0     L     V     D    V      F                            L     L     L
      1f9n_CD_0     L     M     D           F                                  L     L
      1f9n_AF_0     L     M     D    A      F     V          M     P     N     L     L
      1f9n_BE_0     L     M     D    A      F     V    K     M     P     N     L     L

Dist Members ResidueID Alignment
      1b4a_DC_0   80    81    82     83     84    85   86    99    100   102   146   149
      1b4a_FA_0   80    81    82     83     84                           99    146   149
      1f9n_CD_0   80    81    82            84                                 146   149
      1f9n_AF_0   80    81    82     83     84    85         99    100   102   146   149
      1f9n_BE_0   80    81    82     83     84    85   86    99    100   102   146   149

Alignment Occupancy       1     1    1      0.8   1    0.6   0.4   0.6   0.6   0.8   1     1
Gap in betw Columns       0     0    0      0     0    13    0     1     43,46 2

SLIM   RegEx        L[MV]D[AV]F[VI]
SLIM   Coverage           0.8
SLIM   PSSM Match Cutoff 17.7367048216238
SLIM   I=181997 Im=5062 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 1 M(4.501) V(3.087) I(2.268) L(1.708) F(-0.29) Q(-0.42) A(-0.47) C(-1) Y(-1) S(-1.29) T(-1.29) K(-1.29) R(-1.42)
W(-1.42) P(-2) E(-2) N(-2.29) H(-2.29) G(-3) D(-3)
Gap (0)
Pos 2 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (0)
Pos 3 A(3.101) V(3.086) I(2.101) M(0.210) L(0.210) S(0.132) C(-0.60) G(-0.86) T(-1.60) P(-1.60) E(-1.60) Q(-1.60)
K(-1.60) F(-1.60) Y(-1.60) N(-1.78) R(-1.78) D(-2.60) H(-2.60) W(-3.22)
Gap (0)
Pos 4 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 5 V(3.108) I(2.942) L(0.942) M(0.489) A(-0.74) F(-1.05) C(-1.51) Y(-1.51) S(-2.51) T(-2.51) P(-2.74) E(-2.74)
Q(-2.74) K(-2.74) N(-3.51) D(-3.51) H(-3.51) R(-3.51) W(-3.51) G(-3.74)
//

===============================
 SLIM 36
===============================
ID           Arg_repressor_C.clust.0.15.1
Center             2zfz_AC_0
AvSimToCtr 0.519
AvRMSDToCtr 0.829 A
Size         53
NumDistinct 13
FracDDI            1
FracPeptides       0
FracIntra    0
Species            BACILLUS SUBTILIS (5), ESCHERICHIA COLI (4), GEOBACILLUS STEAROTHERMOPHILUS (3), MYCOBACTERIUM
TUBERCULOSIS H37RV (1)
Conservation       0.384615384615385

Members
      1b4a_AC_1   1b4a_ED_1   1b4a_CB_1   1b4a_BA_1   1b4a_FE_1   1b4b_AC_0   1b4b_BA_0   1b4b_CB_0   1b4a_DF_1   1f9n_AC_1
      1f9n_DF_1   1f9n_BA_1   1f9n_ED_1   2p5m_AC_0   2p5m_BA_0   2p5m_CB_0   3cag_AC_0   2zfz_FE_0   3cag_FE_0   2zfz_BA_0
      3cag_BA_0   2zfz_CB_0   3cag_CB_0   2zfz_ED_0   3cag_ED_0   2zfz_DF_0   3cag_DF_0   3bue_AC_0   3bue_DF_0   3bue_BA_0
      3bue_ED_0   3bue_CB_0   3bue_FE_0   1xxa_AC_0   1xxb_AC_0   1xxa_CB_0   1xxb_CB_0   1xxa_DF_0   1xxb_FE_0   1xxa_FE_0
      1xxa_BA_0   1xxa_ED_0   1xxb_DF_0   1xxb_ED_0   1xxb_BA_0   1xxc_CB_0   1xxc_ED_0   1xxc_FE_0   1xxc_DF_0   1xxc_AC_0
      1xxc_BA_0   1f9n_CB_1   1f9n_FE_1

Peptides

PartnerDomains
      Arg_repressor_C
(2zfz_AC_0,1b4a_AC_1,1b4a_ED_1,1b4a_BA_1,1f9n_AC_1,1f9n_DF_1,1f9n_BA_1,2p5m_AC_0,2p5m_BA_0,1xxa_AC_0,1xxb_AC_0,1xxc
_CB_0,1xxc_BA_0)
      Arg_repressor (1b4a_ED_1,1f9n_AC_1,1f9n_DF_1)

Dist Members Intf   Alignment
      2zfz_AC_0     D     D       S       G     N       L     V       R       I     A       G     D       D       T     I     L
      1b4a_AC_1     D     G       T                     L     V       R       I     C       G                     T     C     L
      1b4a_ED_1     D     G       T                     L     V       R       I     C       G     D       D       T           L
      1b4a_BA_1     D     G       T                     L     V       R       I     C       G     D       D       T     C     L
      1f9n_AC_1     D     S       A       S             M     V       K       I                                   T           L
      1f9n_DF_1     D     S       A                     M     V       K       I     C       G                     T           L
      1f9n_BA_1     D     S               S             M     V       K       I     C       G             D       T     I     L
      2p5m_AC_0     D     S       A       S             M     V       K       I     C       G     D       D       T     I     L
      2p5m_BA_0     D     S       A       S     H       M     V       K       I     C       G     D       D       T     I     L
      1xxa_AC_0           Y                             V     V       H       I     A       G     D       D       T     I     F
      1xxb_AC_0     D     Y       N                     V     V       H       I     A       G     D       D       T     I     F
      1xxc_CB_0     D     Y       N       D             V     V       H       I     A       G     D               T     I     F
      1xxc_BA_0     D     Y       N       D             V     V       H       I     A       G     D       D       T           F
Dist Members ResidueID Alignment
      2zfz_AC_0   109   110   111     112     113   114   116   118   143   144   145   146   147   148   149   150
      1b4a_AC_1   88    89    90                    93    95    97    122   123   124               127   128   129
      1b4a_ED_1   88    89    90                    93    95    97    122   123   124   125   126   127         129
      1b4a_BA_1   88    89    90                    93    95    97    122   123   124   125   126   127   128   129
      1f9n_AC_1   88    89    90      91            93    95    97    122                           127         129
      1f9n_DF_1   88    89    90                    93    95    97    122   123   124               127         129
      1f9n_BA_1   88    89            91            93    95    97    122   123   124         126   127   128   129
      2p5m_AC_0   88    89    90      91            93    95    97    122   123   124   125   126   127   128   129
      2p5m_BA_0   88    89    90      91      92    93    95    97    122   123   124   125   126   127   128   129
      1xxa_AC_0         91                          95    97    99    125   126   127   128   129   130   131   132
      1xxb_AC_0   90    91    92                    95    97    99    125   126   127   128   129   130   131   132
      1xxc_CB_0   90    91    92      93            95    97    99    125   126   127   128         130   131   132
      1xxc_BA_0   90    91    92      93            95    97    99    125   126   127   128   129   130         132

Alignment Occupancy       0.923 1     0.846 0.538 0.153 1       1     1     1     0.923 0.923 0.692 0.692 1     0.692 1
Gap in betw Columns       0     0     0     1     1     1       24,25 0     0     0     0     0     0     0

SLIM   RegEx        I[CA]GDDT[IC][LF]
SLIM   Coverage           0.846153846153846
SLIM   PSSM Match Cutoff 19.8382144399458
SLIM   I=181997 Im=5663 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 I(4) L(2) M(1) V(1) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) P(-3) N(-3) D(-3) E(-3) Q(-3) H(-3) R(-3) K(-3) W(-3)
G(-4)
Gap (0)
Pos 1 C(8.381) A(3.069) S(0.217) G(-0.88) T(-1.08) M(-1.08) I(-1.08) L(-1.08) V(-1.38) P(-1.78) N(-1.78) Q(-1.78)
R(-1.78) K(-1.78) E(-1.88) F(-2.08) Y(-2.08) W(-2.38) D(-2.54) H(-2.54)
Gap (0)
Pos 2 G(5.919) T(0.919) S(-0.08) A(-0.08) V(-0.08) D(-1.08) P(-2.08) N(-2.08) E(-2.08) Q(-2.08) H(-2.08) R(-2.08)
K(-2.08) W(-2.08) C(-3.08) M(-3.08) F(-3.08) Y(-3.08) I(-4.08) L(-4.08)
Gap (0)
Pos 3 D(5.632) E(1.632) T(0.632) N(0.632) S(-0.36) Q(-0.36) P(-1.36) G(-1.36) H(-1.36) K(-1.36) A(-2.36) R(-2.36)
C(-3.36) M(-3.36) I(-3.36) V(-3.36) F(-3.36) Y(-3.36) L(-4.36) W(-4.36)
Gap (0)
Pos 4 D(5.632) E(1.632) T(0.632) N(0.632) S(-0.36) Q(-0.36) P(-1.36) G(-1.36) H(-1.36) K(-1.36) A(-2.36) R(-2.36)
C(-3.36) M(-3.36) I(-3.36) V(-3.36) F(-3.36) Y(-3.36) L(-4.36) W(-4.36)
Gap (0)
Pos 5 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 6 C(7.128) I(3.382) L(1.395) M(0.418) V(0.418) F(-0.58) A(-1.04) Y(-1.51) S(-2.04) T(-2.04) W(-3.04) P(-3.36)
N(-3.36) D(-3.36) Q(-3.36) H(-3.36) R(-3.36) K(-3.36) E(-3.51) G(-4.04)
Gap (0)
Pos 7 F(4.826) L(3.640) V(2.640) Y(1.861) M(1.690) I(1.690) W(-0.07) C(-1.21) A(-1.21) H(-1.91) S(-2) T(-2) Q(-2.21)
R(-2.21) K(-2.21) N(-3) E(-3) P(-3.21) G(-3.57) D(-3.57)
//

===============================
 SLIM 37
===============================
ID           Arg_repressor_C.clust.0.15.2
Center             3cag_CD_0
AvSimToCtr 0.520
AvRMSDToCtr 0.751 A
Size         35
NumDistinct 5
FracDDI            0.8
FracPeptides       0
FracIntra    0
Species            ESCHERICHIA COLI (4), MYCOBACTERIUM TUBERCULOSIS H37RV (1)
Conservation       0.8

Members
      1xxa_AD_0   1xxb_AD_0   1xxb_BF_0   1xxa_BF_0   1xxa_EC_0 1xxb_EC_0 1xxa_CE_0 1xxa_FB_0 1xxb_CE_0 1xxa_DA_0
      1xxb_DA_0   1xxb_FB_0   2zfz_AF_0   2zfz_DC_0   3cag_AF_0 3cag_BE_0 3cag_DC_0 3cag_EB_0 3cag_FA_0 2zfz_CD_0
      2zfz_FA_0   2zfz_BE_0   2zfz_EB_0   1xxc_AD_0   1xxc_DA_0 1xxc_BF_0 1xxc_EC_0 1xxc_CE_0 1xxc_FB_0 3bue_AF_0
      3bue_BE_0   3bue_EB_0   3bue_CD_0   3bue_DC_0   3bue_FA_0

Peptides

PartnerDomains
      Arg_repressor_C (1xxa_AD_0,1xxb_AD_0,1xxb_FB_0,1xxc_BF_0)

Dist Members Intf Alignment
      3cag_CD_0   R     R         L       E     L       P     P     G     A     H     Y     S     D     R
      1xxa_AD_0                                         S     P     G     A     Q     L     R     D
      1xxb_AD_0                                 L             P     G     A     Q     L     R
      1xxb_FB_0                                 L       S     P     G     A     Q     L     R     D
      1xxc_BF_0                           L             S     P     G     A     Q     L     R

Dist Members ResidueID Alignment
      3cag_CD_0   96    99    100         103   104     120   121   122   123   125   126   129   146   300
      1xxa_AD_0                                         101   102   103   104   106   107   110   128
      1xxb_AD_0                                 85            102   103   104   106   107   110
      1xxb_FB_0                                 85      101   102   103   104   106   107   110   128
      1xxc_BF_0                           82            101   102   103   104   106   107   110

Alignment Occupancy       0.2     0.2     0.2   0.4     0.6   0.8   1     1     1     1     1     1     0.6   0.2
Gap in betw Columns       15    0     0      0   1    0     2     16,17

SLIM   RegEx        [SP]PGA.[QH][LY]..[RS]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 21.0706824739287
SLIM   I=181997 Im=7782 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 P(5.391) S(3.491) T(0.776) A(0.533) N(0.533) D(-0.39) E(-0.39) Q(-0.39) K(-0.39) G(-0.46) H(-1.39) R(-1.39)
M(-1.39) C(-1.46) V(-2.22) I(-2.39) L(-2.39) Y(-2.39) F(-2.46) W(-3.39)
Gap (0)
Pos 1 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3) F(-
4) W(-4)
Gap (0)
Pos 2 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 3 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (1)
Pos 4 H(6.391) Q(4.778) E(1.810) R(0.864) K(0.810) Y(0.572) N(0.295) D(0.295) T(0) S(-0.13) M(-0.18) P(-1.13) A(-
1.13) G(-2) V(-2) W(-2) L(-2.13) F(-2.17) C(-3) I(-3)
Gap (0)
Pos 5 Y(5.391) L(3.778) V(2.781) M(1.789) I(1.789) F(1.572) W(0.461) H(0.417) C(-1.13) A(-1.13) Q(-1.70) S(-2) T(-2)
R(-2) K(-2) N(-2.70) E(-2.70) P(-3) G(-3.70) D(-3.70)
Gap (2)
Pos 6 R(4.777) S(2.417) K(1.810) Q(0.864) N(0.295) E(0) H(-0.13) T(-0.17) A(-0.17) M(-1) G(-1.17) D(-1.17) P(-1.70)
L(-2) Y(-2) C(-2.17) I(-2.70) V(-2.70) F(-2.70) W(-3)
//

===============================
 SLIM 38
===============================
ID           Arginase.clust.0.2.0
Center             1rla_CB_0
AvSimToCtr 0.621
AvRMSDToCtr 0.553 A
Size         128
NumDistinct 9
FracDDI            0.888888888888889
FracPeptides       0
FracIntra    0
Species            RATTUS NORVEGICUS (3), THERMUS THERMOPHILUS HB8 (2), BACILLUS CALDOVELOX (2), HOMO SAPIENS (1),
THERMUS THERMOPHILUS (1)
Conservation        0.333333333333333

Members
      1cev_AC_0   1cev_FE_0   1cev_ED_0   1cev_CB_0   1cev_BA_0   1cev_DF_0   2cev_AC_0   2cev_CB_0   2cev_BA_0   5cev_AC_0
      5cev_CB_0   5cev_BA_0   5cev_DF_0   5cev_ED_0   2cev_FE_0   5cev_FE_0   2cev_ED_0   4cev_AC_0   4cev_ED_0   4cev_BA_0
      4cev_FE_0   4cev_CB_0   4cev_DF_0   2cev_DF_0   3cev_AC_0   3cev_ED_0   3cev_BA_0   3cev_CB_0   3cev_DF_0   3cev_FE_0
      2ef5_AF_0   2ef5_EB_0   2eiv_AE_0   2eiv_IC_0   2eiv_FH_0   2eiv_KM_0   1hqf_AC_0   1hqh_AC_0   1p8m_AC_0   1t4r_AC_0
      1t4t_AC_0   1p8q_AC_0   1r1o_CB_0   1t4s_AC_0   1p8p_BC_0   1p8p_CA_0   4rla_BC_0   4rla_CA_0   3rla_BC_0   3rla_CA_0
      1hqg_AC_0   1zpe_AC_0   1zpg_AC_0   1hqg_BA_0   1zpe_BA_0   1zpg_BA_0   3e8z_BA_0   3e9b_BA_0   1ta1_AC_0   1ta1_BA_0
      3e8z_AC_0   3e9b_AC_0   3e8z_CB_0   3e9b_CB_0   1t5g_AC_0   1t5g_BA_0   1hqg_CB_0   1zpe_CB_0   1zpg_CB_0   1ta1_CB_0
      1t5g_CB_0   1p8o_CB_0   1t4p_CB_0   1rla_AC_0   1tbj_AC_0   1t5f_AC_0   1t5f_CB_0   1p8m_BA_0   1tbj_BA_0   1t4r_BA_0
      1t4t_BA_0   1p8o_AC_0   1t4p_AC_0   1p8q_BA_0   1rla_BA_0   1t5f_BA_0   1r1o_AC_0   1r1o_BA_0   1p8o_BA_0   1t4p_BA_0
      1p8m_CB_0   1t4r_CB_0   1t4t_CB_0   1tbj_CB_0   1p8q_CB_0   1t4s_BA_0   1t4s_CB_0   1p8n_AC_0   1p8n_BA_0   1p8n_CB_0
      1p8p_AB_0   4rla_AB_0   3rla_AB_0   1tbh_BA_0   5rla_AB_0   5rla_BC_0   5rla_CA_0   3e8q_AC_0   3e8q_CB_0   3e8q_BA_0
      1tbh_AC_0   1tbh_CB_0   2rla_AB_0   2rla_BC_0   2rla_CA_0   1hqf_BA_0   1hqf_CB_0   1hqh_BA_0   1hqh_CB_0   1hqx_AC_0
      1hqx_BA_0   1hqx_CB_0   1pq3_CB_0   1pq3_FE_0   1pq3_AC_0   1pq3_DF_0   1pq3_BA_0   1pq3_ED_0

Peptides

PartnerDomains
      Arginase (1rla_CB_0,2cev_AC_0,2ef5_AF_0,2eiv_AE_0,2eiv_IC_0,1hqx_AC_0,1hqx_BA_0,1pq3_CB_0)

Dist Members Intf   Alignment
      1rla_CB_0     I     G       E       Y     R       E     Y       E       E     K       R     E       G       N     H     K     T
      D     Y       L
      1cev_AC_0           T               Y     R             L       E       M
      2cev_AC_0           T       E       Y     R       E     L       E       M     E
      2ef5_AF_0           A               Y     R             L       E       I     E
      2eiv_AE_0           A               Y     R       E     L       E       I     E
      2eiv_IC_0           A       E       Y     R             L       E       I     E
      1hqx_AC_0     I     G       E       Y     R       E     Y       E                     K     E       G       N     H
      D     Y       L
      1hqx_BA_0     I     G       E       Y     R       E     Y       E                     K     E       G       N     H     K     T
      D     Y       L
      1pq3_CB_0     I     Q               Y     R       E     Y       E       E     N       R     E       G

Dist Members ResidueID Alignment
      1rla_CB_0   208   209   213         254   255     256   259     262     263   266     308   309     310     311   312   313
      316   317   318   319
      1cev_AC_0         204               248   249           253     256     257
      2cev_AC_0         204   208         248   249     250   253     256     257   260
      2ef5_AF_0         198               240   241           245     248     249   252
      2eiv_AE_0         198               240   241     242   245     248     249   252
      2eiv_IC_0         198   202         240   241           245     248     249   252
        1hqx_AC_0   208   209   213   254      255   256   259   262               308   309   310   311   312
        317   318   319
        1hqx_BA_0   208   209   213   254      255   256   259   262               308   309   310   311   312   313
        316   317   318   319
        1pq3_CB_0   227   228         273      274   275   278   281   282   285   327   328   329

Alignment Occupancy     0.444 1     0.555 1          1     0.666 1     1     0.777 0.666 0.444 0.444 0.444 0.333 0.333
      0.222 0.222 0.333 0.333 0.333
Gap in betw Columns     3     37,40 0     0          2     2     0     2

SLIM   RegEx        YRE..[LY]..E[IME]..[ENK]
SLIM   Coverage           0.666666666666667
SLIM   PSSM Match Cutoff 20.3582348216534
SLIM   I=181997 Im=6458 Id=10 Idm=1
SLIM   PSSM p-value 0.256351961337679

PSSM Listing
Pos 0 Y(7) F(3) H(2) W(2) Q(-1) M(-1) I(-1) L(-1) V(-1) C(-2) S(-2) T(-2) A(-2) N(-2) E(-2) R(-2) K(-2) P(-3) G(-3)
D(-3)
Gap (0)
Pos 1 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 2 E(4.594) D(1.594) Q(1.594) K(0.594) S(-0.40) T(-0.40) N(-0.40) H(-0.40) R(-0.40) P(-1.40) A(-1.40) G(-2.40)
M(-2.40) Y(-2.40) I(-3.40) L(-3.40) V(-3.40) F(-3.40) W(-3.40) C(-4.40)
Gap (2)
Pos 3 Y(6.189) L(3.417) V(2.426) F(2.249) M(1.451) I(1.451) W(1.211) H(1.197) C(-1.32) A(-1.32) Q(-1.43) S(-2) T(-2)
R(-2) K(-2) N(-2.43) E(-2.43) P(-3) G(-3.43) D(-3.43)
Gap (2)
Pos 4 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3) L(-3) V(-3) F(-3) W(-3) C(-4)
Gap (0)
Pos 5 M(3.523) E(3.497) I(2.934) L(1.414) Q(0.631) D(0.512) V(-0.05) K(-0.35) F(-0.56) S(-1.05) T(-1.05) R(-1.13)
A(-1.25) N(-1.31) H(-1.31) Y(-1.45) C(-1.56) P(-2.05) W(-2.21) G(-3.05)
Gap (2)
Pos 6 E(4.195) N(3.815) K(2.879) Q(1.307) D(1.288) R(0.319) S(-0.15) T(-0.40) H(-0.64) P(-1.51) A(-1.51) G(-1.68)
M(-2.15) Y(-2.40) L(-3.15) I(-3.40) V(-3.40) F(-3.40) W(-3.51) C(-3.95)
//

===============================
 SLIM 39
===============================
ID          Arginase.clust.0.2.1
Center            1t5f_AB_0
AvSimToCtr 0.672
AvRMSDToCtr 0.465 A
Size         117
NumDistinct 4
FracDDI              1
FracPeptides         0
FracIntra    0
Species              THERMUS THERMOPHILUS (1), HOMO SAPIENS (1), RATTUS NORVEGICUS (1), BACILLUS CALDOVELOX (1)
Conservation         0.25

Members
      1cev_AB_0    1cev_CA_0   1cev_FD_0   1cev_BC_0   1cev_DE_0   1cev_EF_0   1pq3_AB_0   1pq3_DE_0   1pq3_CA_0   1pq3_FD_0
      1hqf_AB_0    1hqf_CA_0   1hqf_BC_0   1hqh_AB_0   1hqh_CA_0   1hqh_BC_0   1p8q_BC_0   1r1o_AB_0   1r1o_BC_0   1r1o_CA_0
      1p8q_CA_0    1hqg_AB_0   1zpe_AB_0   1zpg_AB_0   1hqg_CA_0   1zpe_CA_0   1zpg_CA_0   1hqg_BC_0   1zpg_BC_0   3e8z_BC_0
      1p8m_CA_0    1rla_BC_0   1t5f_BC_0   1tbj_CA_0   1t5g_AB_0   1t5g_BC_0   1t5g_CA_0   1ta1_AB_0   1ta1_CA_0   1ta1_BC_0
      1p8m_AB_0    1tbj_AB_0   1rla_AB_0   1t4t_AB_0   1t4p_CA_0   1p8p_AC_0   1p8p_BA_0   1p8p_CB_0   4rla_AC_0   4rla_BA_0
      1rla_CA_0    5rla_AC_0   5rla_BA_0   5rla_CB_0   1p8n_AB_0   3e8z_AB_0   3e9b_AB_0   1p8m_BC_0   1tbj_BC_0   1t4r_BC_0
      1t4t_BC_0    1p8o_AB_0   1t4p_AB_0   1p8n_BC_0   1p8o_BC_0   1t4p_BC_0   3e8z_CA_0   3e9b_CA_0   1tbh_AB_0   1tbh_BC_0
      1tbh_CA_0    1t4s_AB_0   1t4s_BC_0   1t4s_CA_0   3e9b_BC_0   1hqx_AB_0   1hqx_CA_0   1hqx_BC_0   3rla_AC_0   3rla_BA_0
      3rla_CB_0    2rla_AC_0   2rla_BA_0   2rla_CB_0   3e8q_BC_0   1pq3_BC_0   1pq3_EF_0   2cev_AB_0   5cev_AB_0   2cev_BC_0
      2cev_CA_0    5cev_BC_0   5cev_FD_0   2cev_DE_0   5cev_CA_0   5cev_DE_0   4cev_AB_0   4cev_BC_0   4cev_CA_0   4cev_DE_0
      4cev_FD_0    3cev_AB_0   3cev_CA_0   3cev_BC_0   3cev_FD_0   3cev_DE_0   3cev_EF_0   2cev_EF_0   5cev_EF_0   4cev_EF_0
      2cev_FD_0    2ef5_BE_0   2ef5_FA_0   2eiv_EA_0   2eiv_CI_0   2eiv_HF_0   2eiv_MK_0

Peptides

PartnerDomains
      Arginase (1t5f_AB_0,1cev_AB_0,1pq3_AB_0,2ef5_BE_0)

Dist Members Intf   Alignment
      1t5f_AB_0     M     T        V       D     K       V     G       G       L     S       E
      1cev_AB_0     M     H        V       D     R       I     G       G       L     T       E
      1pq3_AB_0     M     R        I       D     R       V     G       G       L     T       E
      2ef5_BE_0     M     H        V       D     R       P     G       G       L     T       E

Dist Members ResidueID Alignment
      1t5f_AB_0   200   201   203          204   205     249   250     251     252   253     256
      1cev_AB_0   195   196   198          199   200     243   244     245     246   247     250
      1pq3_AB_0   219   220   222          223   224     268   269     270     271   272     275
      2ef5_BE_0   189   190   192          193   194     235   236     237     238   239     242

Alignment Occupancy        1       1       1     1       1     1       1       1     1       1     1
Gap in betw Columns        0       1       0     0       40,43 0       0       0     0       2

SLIM RegEx        [VPI]GGL[TS]..E
SLIM Coverage           1
SLIM PSSM Match Cutoff 20.085562053074
SLIM I=181997 Im=5437 Id=10 Idm=1
SLIM PSSM p-value 0.227387587317757

PSSM Listing
Pos 0 P(5.613) V(3.332) I(3.165) L(1.169) M(0.728) T(-0.24) A(-0.37) F(-0.82) C(-1.24) Y(-1.24) S(-1.64) E(-1.75)
Q(-1.75) K(-1.75) N(-2.04) D(-2.04) H(-2.64) R(-2.64) G(-2.75) W(-3.17)
Gap (0)
Pos 1 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 2 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 3 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 4 T(3.728) S(2.752) G(0.827) D(0.827) P(0.756) N(0.357) E(0) Q(0) K(0) A(-0.04) H(-0.17) C(-1) R(-1) M(-1) I(-2)
L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (2)
Pos 5 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3) L(-3) V(-3) F(-3) W(-3) C(-4)
//

===============================
 SLIM 40
===============================
ID           Arm.clust.0.2.2
Center             1ejl_IB_0
AvSimToCtr 0.583
AvRMSDToCtr 0.633 A
Size         7
NumDistinct 7
FracDDI            0
FracPeptides       0.571428571428571
FracIntra    0
Species            HOMO SAPIENS (2), INFLUENZA A VIRUS (1)
Conservation       0.666666666666667

Members
      1q1s_CB_0 1q1t_CB_0 1iq1_CB_0 3btr_CB_0 3fey_CA_0 1pjn_BA_5 2jdq_AE_4

Peptides
      1ejl-B 1q1s-B 1iq1-B 3btr-B

PartnerDomains
Dist Members Intf   Alignment
      1ejl_IB_0     K     K     R     K     V
      1q1s_CB_0     K     K     R     K     V
      1iq1_CB_0     K     R     R     N     V
      3btr_CB_0     K     L     K     K
      3fey_CA_0     K     R     R     K     T
      1pjn_BA_5     K     R     K     T
      2jdq_AE_4     K     R     D     S

Dist Members ResidueID Alignment
      1ejl_IB_0   128   129   130     131   132
      1q1s_CB_0   128   129   130     131   132
      1iq1_CB_0   49    50    51      52    53
      3btr_CB_0   620   621   622     623
      3fey_CA_0   17    18    19      20    21
      1pjn_BA_5   537   538   539     540
      2jdq_AE_4   738   739   740     741

Alignment Occupancy       1     1     1     1     0.571
Gap in betw Columns       0     0     0     0

SLIM   RegEx        K[RKL][RKD][KSTN][VT]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 17.260642761787
SLIM   I=181997 Im=13718 Id=339 Idm=44
SLIM   PSSM p-value 0.00015470419846507

PSSM Listing
Pos 0 K(5) R(2) E(1) Q(1) S(0) T(0) N(0) P(-1) A(-1) D(-1) H(-1) M(-1) G(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 1 R(4.465) K(3.842) L(2.068) V(1.068) Q(0.854) M(0.315) E(0.303) I(0.093) N(-0.14) H(-0.38) S(-0.66) T(-0.66)
A(-1) P(-1.66) F(-1.68) D(-1.68) Y(-1.78) G(-2.13) C(-2.35) W(-2.78)
Gap (0)
Pos 2 R(4.465) D(4.057) K(3.843) Q(0.905) E(0.876) N(0.219) T(-0.12) H(-0.31) S(-0.44) A(-1.09) M(-1.13) P(-1.44)
G(-1.78) Y(-2.09) L(-2.13) C(-3) I(-3) V(-3) F(-3) W(-3.09)
Gap (0)
Pos 3 K(4.445) N(4.073) S(2.213) T(2.186) R(1.497) E(0.684) Q(0.684) D(0.121) G(-0.28) P(-0.39) A(-0.39) H(-0.78)
M(-1.09) C(-1.96) Y(-2) L(-2.09) I(-2.60) V(-2.60) F(-2.60) W(-3.09)
Gap (0)
Pos 4 V(3.153) I(2.154) T(2.061) M(0.196) L(0.169) A(-0.73) S(-0.80) P(-0.80) G(-0.89) D(-0.89) C(-1.55) E(-1.60)
Q(-1.60) K(-1.60) F(-1.73) Y(-1.73) N(-1.80) H(-1.80) R(-2.60) W(-3.55)
//

===============================
 SLIM 41
===============================
ID           Arm.clust.0.2.3
Center             1i7w_CD_7
AvSimToCtr 0.570
AvRMSDToCtr 0.971 A
Size         6
NumDistinct 4
FracDDI            0.25
FracPeptides       0.5
FracIntra    0
Species            HOMO SAPIENS (1), MUS MUSCULUS (1), XENOPUS LAEVIS (1)
Conservation       0.333333333333333

Members
      1bk6_BF_5 1g3j_CD_4 1jdh_AB_6 1i7x_AB_6 1i7w_AB_7 1t08_AC_6

Peptides
      1bk6-F 1t08-C

PartnerDomains
      Cadherin_C (1i7w_CD_7)

Dist Members Intf   Alignment
      1i7w_CD_7     P     Y      D    S      L      F
      1bk6_BF_5           A      K    K      A
      1g3j_CD_4     A     N      D    E      I      F
      1t08_AC_6     D     A      D    T      L

Dist Members ResidueID Alignment
      1i7w_CD_7   672   673   674     675    677    679
      1bk6_BF_5         127   128     129    131
      1g3j_CD_4   14    15    16      17     19     21
      1t08_AC_6   1484 1485 1486      1487   1489

Alignment Occupancy       0.75   1    1      1      1     0.5
Gap in betw Columns       0      0    0      1      1

SLIM   RegEx        [ADP][ANY][DK][STKE].[LAI].F
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 19.4969472842117
SLIM   I=181997 Im=5583 Id=339 Idm=16
SLIM   PSSM p-value 0.0265510950442234

PSSM Listing
Pos 0 P(5.614) D(4.614) A(2.622) E(0.708) T(0.372) S(0.021) N(-0.14) Q(-0.83) G(-0.97) K(-1.28) C(-1.29) H(-1.83)
R(-1.83) M(-1.97) I(-2.14) L(-2.21) V(-2.52) Y(-2.83) F(-2.97) W(-3.83)
Gap (0)
Pos 1 Y(5.614) N(4.615) A(3.309) F(1.629) S(0.728) H(0.696) W(0.629) G(-0.27) D(-0.27) C(-0.60) Q(-0.64) T(-0.75)
E(-0.75) R(-0.75) K(-0.75) M(-1.17) I(-1.24) L(-1.24) P(-1.46) V(-1.75)
Gap (0)
Pos 2 D(5.712) K(3.621) E(1.827) T(0.827) N(0.827) R(0.667) Q(0.357) S(0) P(-1) H(-1) G(-1.17) A(-1.64) M(-2.04)
Y(-2.64) C(-3) I(-3) V(-3) F(-3) L(-3.04) W(-3.64)
Gap (0)
Pos 3 E(3.645) K(3.645) S(2.696) T(2.696) Q(1.107) D(1.053) R(0.824) N(0.357) G(-0.00) P(-0.04) A(-0.04) H(-0.37)
M(-1.17) C(-1.60) Y(-2) L(-2.17) I(-2.37) V(-2.37) F(-2.37) W(-3)
Gap (1)
Pos 4 L(3.375) I(2.858) A(2.633) V(2.375) M(1.496) F(-0.24) S(-0.24) C(-0.64) Y(-1.17) G(-1.33) T(-1.64) Q(-1.75)
R(-1.75) K(-1.75) P(-2.04) N(-2.04) E(-2.04) W(-2.37) H(-2.64) D(-2.89)
Gap (1)
Pos 5 F(5.306) Y(2.306) W(0.306) M(-0.69) I(-0.69) L(-0.69) H(-1.69) V(-1.69) C(-2.69) S(-2.69) T(-2.69) A(-2.69)
G(-3.69) N(-3.69) D(-3.69) E(-3.69) Q(-3.69) R(-3.69) K(-3.69) P(-4.69)
//

===============================
 SLIM 42
===============================
ID           AsnC_trans_reg.clust.0.25.2
Center             2p6t_FD_4
AvSimToCtr 0.521
AvRMSDToCtr 0.780 A
Size         39
NumDistinct 6
FracDDI            0.333333333333333
FracPeptides       0
FracIntra    0
Species            PYROCOCCUS HORIKOSHII (3), PYROCOCCUS HORIKOSHII OT3 (1), NEISSERIA MENINGITIDIS SEROGROUP B (1)
Conservation       0.6

Members
      2e1a_BA_0   2z4p_DA_0   2e1a_DC_0   2z4p_BC_0   2zbc_AD_0   2zbc_BC_0   2zbc_GE_0   2zbc_CA_0   2zbc_DB_0 2zbc_HF_0
      2zny_BD_3   2zny_CA_3   2zny_FH_3   2zny_DF_3   2zny_EC_3   2zny_GE_3   2p5v_AC_4   2p5v_BH_4   2p5v_CE_4 2p5v_FD_4
      2p5v_EG_4   2p5v_DB_4   2p5v_HF_4   2p5v_GA_4   2p6s_AC_4   2p6s_CE_4   2p6s_FD_4   2p6s_DB_4   2p6s_GA_4 2p6s_BH_4
      2p6s_EG_4   2p6s_HF_4   2p6t_AC_4   2p6t_GA_4   2p6t_BH_4   2p6t_DB_4   2p6t_EG_3   2p6t_CE_3   2p6t_HF_3

Peptides

PartnerDomains
      AsnC_trans_reg (2p6t_FD_4,2zny_GE_3)
Dist Members Intf   Alignment
      2p6t_FD_4     K     R     T     G       E     D     L
      2e1a_BA_0                 Y     G       E     D
      2zbc_AD_0                 Y     G       V     D
      2zny_BD_3                 T     G       D     D
      2zny_DF_3     A           T     G       D     D
      2zny_GE_3     A     Y     T     G       D     D

Dist Members ResidueID Alignment
      2p6t_FD_4   78    83    103     104     105   107   1160
      2e1a_BA_0               35      36      37    39
      2zbc_AD_0               35      36      37    39
      2zny_BD_3               120     121     122   124
      2zny_DF_3   97          120     121     122   124
      2zny_GE_3   97    100   120     121     122   124

Alignment Occupancy       0.5   0.333 1       1     1     1      0.166
Gap in betw Columns       22,24 0     0       1

SLIM   RegEx        [TY]G[DEV].D
SLIM   Coverage           0.666666666666667
SLIM   PSSM Match Cutoff 18.220664439472
SLIM   I=181997 Im=4800 Id=6 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Y(5.901) T(3.595) F(1.914) H(1.140) W(0.914) S(0.619) P(0.603) G(0.603) D(0.603) Q(-0.23) N(-0.33) E(-0.33)
K(-0.33) M(-1) C(-1.23) A(-1.23) R(-1.23) I(-1.54) L(-1.54) V(-1.54)
Gap (0)
Pos 1 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 2 D(5.319) E(3.973) V(2.212) I(1.220) Q(1.093) T(0.539) N(0.531) K(0.106) S(-0.15) H(-0.64) M(-0.64) L(-0.73)
R(-0.89) A(-1.03) P(-1.11) G(-1.43) Y(-2.03) F(-2.27) C(-2.38) W(-3.37)
Gap (1)
Pos 3 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
//

===============================
 SLIM 43
===============================
ID          Asp.clust.0.25.1
Center            1xn2_DH_0
AvSimToCtr 0.485
AvRMSDToCtr 0.832   A
Size         24
NumDistinct 10
FracDDI             0
FracPeptides        1
FracIntra    0
Species             NONE
Conservation        UNDEFINED

Members
      1er8_EI_0 1gkt_AB_0 2er7_EI_0 1gvu_AI_0 3er5_EI_0 1gvx_AI_0 1oex_AB_0 2er6_EI_0 3apr_EI_0 1smr_AB_0
      1smr_CD_0 1smr_GH_0 1smr_EF_0 1fkn_AC_0 1fkn_BD_0 1xn3_CI_0 1m4h_AC_0 1m4h_BD_0 1xn2_BF_0 1xn2_AE_0
      1xn2_CG_0 2zhr_AC_0 2zhr_BD_0 5er2_EI_0

Peptides
      1xn2-H 1er8-I 1gkt-B 1gvu-I 1gvx-I 1oex-B 1smr-B 1xn3-I 1m4h-C 5er2-I

PartnerDomains

Dist Members Intf Alignment
      1xn2_DH_0   W     S       E     V     N     A     E     F
      1er8_EI_0         H       P     F     H     V
      1gkt_AB_0         H       P     F     H     I     H
      1gvu_AI_0                 P     F     H     V     I
      1gvx_AI_0                 P     T     E     R     E
      1oex_AB_0                 P     F     A     I     H
      1smr_AB_0                 P     F     H     Y     Y
      1xn3_CI_0                 E     V     N     V
      1m4h_AC_0                       L     D     V     E     F
      5er2_EI_0                       F     H     K     F

Dist Members ResidueID Alignment
      1xn2_DH_0   4     5     6       7     8     11    12    13
      1er8_EI_0         1     2       3     4     7
      1gkt_AB_0         401   402     403   404   406   407
      1gvu_AI_0               403     404   405   407   408
      1gvx_AI_0               401     402   403   405   406
      1oex_AB_0               402     403   404   406   407
      1smr_AB_0               3       4     5     7     8
      1xn3_CI_0               7       8     9     11
      1m4h_AC_0                       2     3     6     7     8
      5er2_EI_0                       2     3     5     6

Alignment Occupancy       0.1   0.3   0.8   1     1     1     0.8   0.2
Gap in betw Columns       0     0     1,2   0
SLIM   RegEx        [PE][FVTL][HNADE].{1,2}[VIAKRY][EHFIY]
SLIM   Coverage           0.9
SLIM   PSSM Match Cutoff 22.2541555228055
SLIM   I=181997 Im=6283 Id=53 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 P(6.489) E(3.397) T(0.604) D(0.529) Q(0.529) K(-0.26) S(-0.86) N(-0.86)   A(-1.22) H(-1.26) R(-1.26) G(-2.22)
M(-2.22) V(-2.39) Y(-2.86) I(-3.22) L(-3.22) C(-3.39) F(-3.86) W(-3.86)
Gap (0)
Pos 1 F(5.489) V(2.577) Y(2.499) L(1.889) T(1.719) I(1.680) M(0.651) W(0.506)   S(-0.93) A(-1.03) H(-1.09) P(-1.15)
G(-1.15) D(-1.15) C(-1.47) Q(-1.76) K(-1.76) E(-1.82) N(-1.93) R(-2.40)
Gap (0)
Pos 2 H(7.307) N(4.412) D(3.761) E(2.792) A(1.723) Y(1.322) Q(0.454) S(0.181)   T(0.103) R(-0.16) K(-0.31) G(-0.87)
F(-1.52) P(-1.58) M(-1.89) C(-1.95) V(-2.29) W(-2.48) I(-2.50) L(-2.54)
Gap (1,2)
Pos 3 Y(4.699) V(3.110) I(2.946) K(2.753) R(2.751) A(1.795) L(0.980) F(0.866)   M(0.575) H(-0.08) W(-0.24) Q(-0.38)
S(-0.68) E(-0.72) C(-1.06) N(-1.27) T(-1.31) P(-1.85) G(-1.86) D(-2.31)
Gap (0)
Pos 4 H(6.392) Y(4.729) E(3.801) F(3.750) I(1.726) D(1.020) Q(0.901) W(0.056)   K(-0.09) L(-0.10) N(-0.14) T(-0.61)
R(-0.64) M(-0.74) S(-0.88) V(-0.94) A(-1.60) P(-1.90) G(-2.53) C(-2.53)
//

===============================
 SLIM 44
===============================
ID           Asparaginase.clust.0.25.3
Center             2p2d_BA_0
AvSimToCtr 0.542
AvRMSDToCtr 0.703 A
Size         7
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            VIBRIO CHOLERAE (3), ESCHERICHIA COLI (1)
Conservation       0.75

Members
      2ocd_AC_0 2ocd_BD_0 2ocd_CA_0 2ocd_DB_0 2p2d_AB_0 2p2d_DC_0 2p2d_CD_0

Peptides

PartnerDomains
        Asparaginase (2p2d_BA_0,2ocd_AC_0,2ocd_BD_0,2ocd_CA_0)

Dist Members Intf   Alignment
      2p2d_BA_0     R     L      P      E     R     E     M      Q      I     L     A     E     L     R      D     Q     I
      L     N       Y     G      A      G     I     H     I
      2ocd_AC_0                  P      E     R     E            Q      I           A     D     L     R      D
            N       H     G      A      G     I     N     I
      2ocd_BD_0                  P      E     R     E            Q      I           A     D     L     R      D     Q
      L     N       H            A      G     I     N     I
      2ocd_CA_0                  P      E     R     E            Q      I     L     A     D           R      D     Q
      L     N       H            A      G     I     N     I

Dist Members ResidueID Alignment
      2p2d_BA_0   19    37    39        40    43    45    46     118    119   121   122   123   124   125    127   129
      130   133   134   137   168       183   184   185   186    187
      2ocd_AC_0               39        40    43    45           118    119         122   123   124   125    127
            134   137   168   183       184   185   186   187
      2ocd_BD_0               39        40    43    45           118    119         122   123   124   125    127   129
      133   134   137         183       184   185   186   187
      2ocd_CA_0               39        40    43    45           118    119   121   122   123         125    127   129
      133   134   137         183       184   185   186   187

Alignment Occupancy       0.25   0.25   1     1     1     1      0.25   1     1     0.5   1     1     0.75   1     1
      0.75 0.25 0.75      1      1      0.5   1     1     1      1      1
Gap in betw Columns       0      2      1     72    0     1      0      0     0     0     1     1     3      0     2
      29,30 14    0       0      0      0

SLIM   RegEx        QI.LA[DE]LR.D.Q.{3}LN..[HY]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 20.2717955413276
SLIM   I=181997 Im=7984 Id=11 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(5) E(2) R(1) K(1) S(0) T(0) N(0) D(0) H(0) M(0) P(-1) A(-1) Y(-1) G(-2) L(-2) V(-2) W(-2) C(-3) I(-3) F(-3)
Gap (0)
Pos 1 I(4) L(2) M(1) V(1) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) P(-3) N(-3) D(-3) E(-3) Q(-3) H(-3) R(-3) K(-3) W(-3)
G(-4)
Gap (1)
Pos 2 L(3.306) V(2.306) M(1.306) I(1.306) F(-0.69) C(-1.69) A(-1.69) Y(-1.69) S(-2.69) T(-2.69) Q(-2.69) R(-2.69)
K(-2.69) W(-2.69) P(-3.69) N(-3.69) E(-3.69) H(-3.69) G(-4.69) D(-4.69)
Gap (0)
Pos 3 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (0)
Pos 4 D(5.718) E(3.752) Q(0.954) T(0.827) N(0.827) S(0) K(-0.04) H(-0.64) P(-1) R(-1.04) G(-1.17) A(-1.64) M(-2.64)
Y(-2.64) I(-3) V(-3) F(-3) C(-3.17) L(-3.64) W(-3.64)
Gap (0)
Pos 5 L(3.712) V(2.712) M(1.712) I(1.712) F(-0.28) C(-1.28) A(-1.28) Y(-1.28) S(-2.28) T(-2.28) Q(-2.28) R(-2.28)
K(-2.28) W(-2.28) P(-3.28) N(-3.28) E(-3.28) H(-3.28) G(-4.28) D(-4.28)
Gap (0)
Pos 6 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (1)
Pos 7 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (1)
Pos 8 Q(4.712) E(1.712) R(0.712) K(0.712) S(-0.28) T(-0.28) N(-0.28) D(-0.28) H(-0.28) M(-0.28) P(-1.28) A(-1.28)
Y(-1.28) G(-2.28) L(-2.28) V(-2.28) W(-2.28) C(-3.28) I(-3.28) F(-3.28)
Gap (3)
Pos 9 L(3.712) V(2.712) M(1.712) I(1.712) F(-0.28) C(-1.28) A(-1.28) Y(-1.28) S(-2.28) T(-2.28) Q(-2.28) R(-2.28)
K(-2.28) W(-2.28) P(-3.28) N(-3.28) E(-3.28) H(-3.28) G(-4.28) D(-4.28)
Gap (0)
Pos 10 N(6) S(1) D(1) T(0) G(0) E(0) Q(0) R(0) K(0) H(-1) P(-2) A(-2) M(-2) Y(-2) C(-3) I(-3) L(-3) V(-3) F(-3) W(-
4)
Gap (2)
Pos 11 H(7.713) Y(5.633) F(1.667) N(0.728) D(0.718) W(0.667) Q(-0.17) T(-0.24) E(-0.24) R(-0.24) S(-1.17) K(-1.17)
M(-1.64) V(-1.64) A(-2) I(-2.04) L(-2.04) P(-2.17) G(-2.17) C(-2.64)
//

===============================
 SLIM 45
===============================
ID           Asparaginase_2.clust.0.2.0
Center             2zal_AD_0
AvSimToCtr 0.587
AvRMSDToCtr 0.588 A
Size         23
NumDistinct 4
FracDDI            0.75
FracPeptides       0
FracIntra    0
Species           HOMO SAPIENS (1), ESCHERICHIA COLI K12 (1), LUPINUS LUTEUS (1), ELIZABETHKINGIA MENINGOSEPTICA (1)
Conservation       0.25

Members
      1apy_AD_0 1apy_CB_0 1apz_CB_0 1apz_AD_0 1ayy_AD_0 2gac_AD_0 2gac_CB_0 2gaw_AD_0 2gaw_CB_0 2gl9_AD_0
      2gl9_CB_0 2gez_AD_0 2gez_GF_0 2gez_CB_0 2gez_EH_0 1ayy_CB_0 1jn9_AD_0 1t3m_AD_0 1jn9_CB_0 1k2x_AD_0
      1t3m_CB_0 1k2x_CB_0 2zal_CB_0
Peptides

PartnerDomains
      Asparaginase_2 (2zal_AD_0,1apy_AD_0,2gez_AD_0)

Dist Members Intf   Alignment
      2zal_AD_0     K     L     P     G     R     V     L     E     I     R     L
      1apy_AD_0     K     I     H     G     R     V     I     D     M     R
      1ayy_AD_0     K     M     H     G     R     V     I     E     I     R
      2gez_AD_0     K     M     V     G     R     I     L     E     I     R

Dist Members ResidueID Alignment
      2zal_AD_0   203   204   205     206   207   208   213   234   237   238   271
      1apy_AD_0   207   208   209     210   211   212   217   238   241   242
      1ayy_AD_0   176   177   178     179   180   181   186   207   210   211
      2gez_AD_0   217   218   219     220   221   222   227   247   250   251

Alignment Occupancy       1     1     1     1     1     1     1     1     1     1     0.25
Gap in betw Columns       0     0     0     0     0     4     19,20 2     0

SLIM   RegEx        K[MIL][HPV]GR[VI].{4}[IL]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 20.1264835869715
SLIM   I=181997 Im=4638 Id=5 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 K(5) R(2) E(1) Q(1) S(0) T(0) N(0) P(-1) A(-1) D(-1) H(-1) M(-1) G(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 1 M(4.340) L(2.954) I(2.824) V(1.752) F(0) Q(-0.60) C(-1) A(-1) Y(-1) S(-1.37) T(-1.37) R(-1.46) K(-1.46) W(-
1.46) P(-2.37) N(-2.37) E(-2.37) H(-2.37) D(-3.17) G(-3.37)
Gap (0)
Pos 2 H(7.306) P(5.614) V(2.621) I(1.621) Y(1.334) N(0.380) D(0.380) T(0.193) M(-0.24) L(-0.33) E(-0.46) Q(-0.46)
R(-0.60) A(-0.89) S(-1.17) K(-1.17) F(-1.27) C(-2.04) G(-2.17) W(-2.46)
Gap (0)
Pos 3 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 4 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 5 V(3.728) I(3.357) L(1.357) M(1) A(-0.17) F(-0.64) C(-1) Y(-1) S(-2) T(-2) P(-2.17) E(-2.17) Q(-2.17) K(-2.17)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.17)
Gap (4)
Pos 6 I(3.433) L(3.433) V(2.433) M(1.620) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2.37) R(-2.37) K(-2.37) W(-2.37)
P(-3) N(-3) E(-3) H(-3) D(-3.37) G(-4)
//

===============================
 SLIM 46
===============================
ID           Asparaginase_2.clust.0.2.1
Center             2zal_DA_0
AvSimToCtr 0.601
AvRMSDToCtr 0.574 A
Size         19
NumDistinct 6
FracDDI            1
FracPeptides       0
FracIntra    0
Species           LUPINUS LUTEUS (3), HOMO SAPIENS (1), ESCHERICHIA COLI K12 (1), ELIZABETHKINGIA MENINGOSEPTICA (1)
Conservation       0.5

Members
      1apy_BC_0 1apy_DA_0 1apz_BC_0 1apz_DA_0 1jn9_BC_0 1k2x_DA_0 1t3m_BC_0 1jn9_DA_0 1t3m_DA_0 1k2x_BC_0
      2zal_BC_0 2gac_BC_0 2gac_DA_0 2gl9_BC_0 2gl9_DA_0 2gez_BC_0 2gez_HE_0 2gez_DA_0 2gez_FG_0

Peptides

PartnerDomains
      Asparaginase_2 (2zal_DA_0,1apy_BC_0,2gac_BC_0,2gez_BC_0,2gez_HE_0,2gez_DA_0)

Dist Members Intf   Alignment
      2zal_DA_0     M     T     L     K    A     S     P     H     V     M     M     I     G     A     F
      1apy_BC_0     M     T     M     D    V     T           H     T     L     L     V     S     A     F
      2gac_BC_0     M           Y          I     T     P     H     V     M     L     V     G     A     F
      2gez_BC_0     M           M     K    C     T     P     H     I     Y     L     A     G     A
      2gez_HE_0     M           M     K    C     T     P     H     I     Y     L     A     G     A     F
      2gez_DA_0     M     T     M     K    C     T     P     H     I     Y     L     A     G     A     F

Dist Members ResidueID Alignment
      2zal_DA_0   87    91    92      93   94    117   118   119   120   121   122   123   126   127   130
      1apy_BC_0   69    73    74      75   76    99          101   102   103   104   105   108   109   112
      2gac_BC_0   70          74           76    99    100   101   102   103   104   105   108   109   112
      2gez_BC_0   86          91      92   93    116   117   118   119   120   121   122   125   126
      2gez_HE_0   86          91      92   93    116   117   118   119   120   121   122   125   126   129
      2gez_DA_0   86    90    91      92   93    116   117   118   119   120   121   122   125   126   129

Alignment Occupancy       1     0.5   1    0.833 1     1     0.833 1     1     1     1     1     1     1     0.833
Gap in betw Columns       3     0     0     0     22      0   0   0    0     0     0     2     0     2

SLIM   RegEx        [TS]PH[IVT][YML][LM][AVI]..[GS]A..F
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 22.165902226461
SLIM   I=181997 Im=4868 Id=5 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 T(3.827) S(2.430) G(0.888) D(0.888) P(0.844) N(0.251) E(0) Q(0) K(0) H(-0.11) A(-0.27) C(-1) R(-1) M(-1) I(-2)
L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 1 P(6.817) T(0.817) S(-1.18) A(-1.18) N(-1.18) D(-1.18) E(-1.18) Q(-1.18) K(-1.18) G(-2.18) H(-2.18) R(-2.18)
M(-2.18) V(-2.18) C(-3.18) I(-3.18) L(-3.18) Y(-3.18) F(-4.18) W(-4.18)
Gap (0)
Pos 2 H(8) Y(2) N(1) D(1) T(0) E(0) Q(0) R(0) S(-1) K(-1) F(-1) P(-2) A(-2) G(-2) M(-2) V(-2) W(-2) C(-3) I(-3) L(-
3)
Gap (0)
Pos 3 I(3.526) V(2.974) T(2.220) L(1.531) M(0.844) F(-0.43) A(-0.54) S(-0.56) P(-0.64) D(-0.70) G(-0.73) C(-1) Y(-
1.11) E(-1.44) Q(-1.44) K(-1.44) N(-1.56) H(-1.56) R(-2.27) W(-3)
Gap (0)
Pos 4 Y(6.307) M(3.929) L(2.463) F(2.355) W(1.345) H(1.321) V(1.274) I(0.842) Q(-0.61) C(-1.37) A(-1.37) S(-1.54)
T(-1.54) R(-1.54) K(-1.54) N(-2.11) E(-2.11) P(-2.54) G(-3.11) D(-3.11)
Gap (0)
Pos 5 L(3.844) M(3.430) V(2.819) I(1.888) F(0) C(-1) A(-1) Y(-1) Q(-1.27) S(-1.74) T(-1.74) R(-1.74) K(-1.74) W(-
1.74) P(-2.74) N(-2.74) E(-2.74) H(-2.74) G(-3.74) D(-3.74)
Gap (0)
Pos 6 A(3.321) V(2.929) I(2.771) L(0.842) M(0.433) S(0.355) C(-0.37) G(-0.65) F(-1.03) T(-1.37) Y(-1.37) P(-1.43)
E(-1.43) Q(-1.43) K(-1.43) N(-1.56) R(-1.56) D(-2.37) H(-2.37) W(-3)
Gap (2)
Pos 7 G(5.818) S(2.295) T(1) A(0.251) V(-0.15) N(-0.56) D(-0.74) E(-1.27) Q(-1.27) K(-1.27) P(-1.74) H(-1.74) R(-
1.74) W(-2.11) C(-2.27) M(-2.27) F(-2.74) Y(-2.74) I(-3.27) L(-3.27)
Gap (0)
Pos 8 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (2)
Pos 9 F(5.817) Y(2.817) W(0.817) M(-0.18) I(-0.18) L(-0.18) H(-1.18) V(-1.18) C(-2.18) S(-2.18) T(-2.18) A(-2.18)
G(-3.18) N(-3.18) D(-3.18) E(-3.18) Q(-3.18) R(-3.18) K(-3.18) P(-4.18)
//

===============================
 SLIM 47
===============================
ID          Avidin.clust.0.15.0
Center            1sws_CB_0
AvSimToCtr 0.735
AvRMSDToCtr 0.303   A
Size         150
NumDistinct 10
FracDDI             1
FracPeptides        0
FracIntra    0
Species             STREPTOMYCES AVIDINII (6), GALLUS GALLUS (3), PLEUROTUS CORNUCOPIAE (1)
Conservation        0.6

Members
      1hqq_AD_0   1hqq_CB_0   1hqq_BC_0   1hqq_DA_0   1hy2_BC_0   1hy2_AD_0   1hy2_DA_0   1hy2_CB_0   1ndj_AD_0   1rxj_AD_0
      1rxj_CB_0   1rxj_BC_0   1swg_AD_0   1rxj_DA_0   1swg_DA_0   1swg_BC_0   1ndj_DA_0   1swd_AD_0   1mep_AD_0   1swg_CB_0
      1mep_BC_0   1mep_CB_0   1swd_DA_0   1mep_DA_0   1ndj_BC_0   1ndj_CB_0   1n9m_AD_0   1n9m_CB_0   1n9m_BC_0   1n9m_DA_0
      1swe_BC_0   1swk_AD_0   1swk_CB_0   1swk_BC_0   1swk_DA_0   1swe_CB_0   1kff_AD_0   1kl4_AD_0   1kff_DA_0   1kl4_DA_0
      1n7y_BC_0   1swh_AD_0   1swh_DA_0   1n7y_CB_0   1nbx_AD_0   1nc9_AD_0   1swa_AD_0   1swq_AD_0   1swq_DA_0   1nbx_DA_0
      1nc9_DA_0   1swa_DA_0   1swl_DA_0   1kff_BC_0   1kl4_BC_0   1nc9_BC_0   1swa_BC_0   1sws_BC_0   1swc_BC_0   1swh_BC_0
      1swf_CB_0   1kl4_CB_0   1nc9_CB_0   1swa_CB_0   1swc_CB_0   1swh_CB_0   1swf_BC_0   1swb_AD_0   1swb_CB_0   1swb_BC_0
      1swb_DA_0   1swu_BC_0   1swu_CB_0   1n7y_DA_0   1n7y_AD_0   1swf_AD_0   1swj_AD_0   1swf_DA_0   1nbx_CB_0   1swj_DA_0
      1kff_CB_0   1nbx_BC_0   1swc_DA_0   1sws_DA_0   1swn_AD_0   1swn_DA_0   1swc_AD_0   1sws_AD_0   1swu_AD_0   1n9y_AD_0
      1n9y_DA_0   1swd_BC_0   1swd_CB_0   1swj_CB_0   1swo_DA_0   1swu_DA_0   1swj_BC_0   1n9y_BC_0   1n9y_CB_0   1swl_AD_0
      1swl_BC_0   1swl_CB_0   1swo_BC_0   1swq_BC_0   1swo_CB_0   1swq_CB_0   1swn_BC_0   1swn_CB_0   1swo_AD_0   1n43_AD_0
      1n43_BC_0   1n43_CB_0   1n43_DA_0   1swe_AD_0   1swe_DA_0   2zsc_AB_0   2zsc_BA_0   1swp_AD_0   1swp_DA_0   1swp_BC_0
      1swp_CB_0   1swr_AD_0   1swr_CB_0   1swr_BC_0   1swr_DA_0   1kl3_BC_0   1kl5_BC_0   1kl3_CB_0   1kl5_CB_0   2bc3_AB_0
      2bc3_BA_0   1kl5_DA_0   1nqm_AB_0   1nqm_DC_0   1nqm_BA_0   1nqm_CD_0   1kl3_AD_0   1kl5_AD_0   1wbi_AD_0   1wbi_FE_0
      1wbi_BC_0   1wbi_CB_0   1wbi_GH_0   1wbi_DA_0   1wbi_EF_0   1wbi_HG_0   2jgs_AB_0   2jgs_DC_0   2jgs_BA_0   2jgs_CD_0

Peptides

PartnerDomains
      Avidin (1sws_CB_0,1swg_AD_0,1swq_AD_0,1swl_DA_0,1swo_DA_0,2zsc_AB_0,1swr_AD_0,1wbi_AD_0,2jgs_AB_0,2jgs_CD_0)

Dist Members Intf   Alignment
      1sws_CB_0     W     L       L       W     K       S     T       L       V
      1swg_AD_0     W     L       L       W     K       S     T       L       V
      1swq_AD_0     W     L               A     K       S     T       L       V
      1swl_DA_0     F     L       L       W     K       S     T       L       V
      1swo_DA_0     W     L               F     K       S     T       L       V
      2zsc_AB_0     W     L       L       W     E       S     T       L       V
      1swr_AD_0     W     L       L       A     K       S     T       L       V
      1wbi_AD_0     W     L       Q       W     I             T       R       V
      2jgs_AB_0     W     L       L       W     K             T       R       V
      2jgs_CD_0     W     L       L             K       A     T       R       V

Dist Members ResidueID Alignment
       1sws_CB_0   108   109   110   120    121   122   123   124   125
       1swg_AD_0   108   109   110   120    121   122   123   124   125
       1swq_AD_0   108   109         120    121   122   123   124   125
       1swl_DA_0   108   109   110   120    121   122   123   124   125
       1swo_DA_0   108   109         120    121   122   123   124   125
       2zsc_AB_0   96    97    98    108    109   110   111   112   113
       1swr_AD_0   108   109   110   120    121   122   123   124   125
       1wbi_AD_0   95    96    97    108    109         111   112   113
       2jgs_AB_0   55    56    57    68     69          71    72    73
       2jgs_CD_0   55    56    57           69    70    71    72    73

Alignment Occupancy      1     1     0.8    0.9   1     0.8   1     1     1
Gap in betw Columns      0     0     9,10   0     0     0     0     0

SLIM   RegEx        [WAF][KIE][SA]T[LR]V
SLIM   Coverage           0.8
SLIM   PSSM Match Cutoff 19.4560411495908
SLIM   I=181997 Im=3391 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 W(10.48) F(3.737) A(2.394) Y(1.867) S(-0.53) M(-0.93) C(-1.22) G(-1.25) L(-1.36) I(-1.59) Q(-1.83) H(-1.93)
T(-2.14) E(-2.22) R(-2.22) K(-2.22) V(-2.36) N(-2.41) P(-2.44) D(-3.14)
Gap (0)
Pos 1 K(4.779) E(2.834) R(1.794) I(1.705) Q(1.071) D(0.037) S(-0.09) T(-0.09) N(-0.09) L(-0.15) M(-0.54) H(-0.91)
A(-1) P(-1.09) V(-1.15) Y(-1.84) F(-1.93) G(-2.09) C(-2.54) W(-3)
Gap (0)
Pos 2 S(3.650) A(1.996) T(0.662) N(0.662) G(-0.22) E(-0.30) Q(-0.30) K(-0.30) D(-0.33) C(-1.02) P(-1.22) R(-1.22)
M(-1.22) H(-1.30) I(-2.02) L(-2.02) V(-2.22) F(-2.22) Y(-2.22) W(-3.22)
Gap (0)
Pos 3 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 4 R(3.798) L(3.644) V(2.644) M(1.664) I(1.646) K(0.837) Q(-0.09) F(-0.33) A(-1) N(-1.09) E(-1.09) H(-1.09) Y(-
1.21) C(-1.30) S(-1.58) T(-1.58) W(-2.21) P(-2.58) G(-2.92) D(-2.92)
Gap (0)
Pos 5 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
//

===============================
 SLIM 48
===============================
ID          BIR.clust.0.2.0
Center            1oy7_EF_0
AvSimToCtr 0.556
AvRMSDToCtr 0.540 A
Size         52
NumDistinct 13
FracDDI            0.153846153846154
FracPeptides       0.615384615384615
FracIntra    0.0769230769230769
Species            HOMO SAPIENS (5)
Conservation       1

Members
      1g3f_AB_0   1jd5_AB_0   1jd6_AB_0   1nw9_AB_0   2opz_AE_0   2opz_BF_0   2opz_CG_0   2i3h_BD_0   1oxn_EF_0   2i3h_AC_0
      3d9t_BD_0   2uvl_BA_0   1xb0_AG_0   1xb1_CI_0   1xb1_DJ_0   1xb1_FL_0   2uvl_AB_0   1sdz_AB_0   1se0_AB_0   2vm5_AA_0
      2opz_DH_0   3d9t_AC_0   1g73_CB_0   1g73_DA_0   1xb1_AG_0   1oxq_EF_0   1tw6_AC_0   3d9u_AB_0   1xb0_BH_0   1xb0_CI_0
      1xb0_DJ_0   1xb0_FL_0   1xb0_EK_0   1xb1_EK_0   1xb1_BH_0   1oxn_AD_0   1oxq_AD_0   1oy7_AD_0   3f7g_AD_0   1oxn_BC_0
      1oxq_BC_0   3f7g_BC_0   1oy7_BC_0   1oxn_CB_0   1oxq_CB_0   3f7g_CB_0   1oy7_CB_0   1oxn_DA_0   1oxq_DA_0   1oy7_DA_0
      3f7g_DA_0   1tw6_BD_0

Peptides
      1oy7-F 1g3f-B 1jd5-B 1jd6-B 2i3h-D 1oxn-F 3d9t-D 1sdz-B

PartnerDomains
      Smac_DIABLO (1g73_CB_0)
      Peptidase_C14 (1nw9_AB_0)

Dist Members Intf   Alignment
      1oy7_EF_0     A     E       V       V
      1g3f_AB_0     A     V       P       I
      1jd5_AB_0     A     I       A       Y
      1jd6_AB_0     A     V       P       F
      1nw9_AB_0     A     T       P       F
      2i3h_BD_0     A     V       P       W
      1oxn_EF_0     A     E       A       V
      3d9t_BD_0     A     T       P       F
      2uvl_BA_0     S     M       R       Y
      1sdz_AB_0     A     V       A       F
      2vm5_AA_0     S     M       R       V
      1g73_CB_0     A     V       P       I
      1oxn_AD_0     A     T       L       S

Dist Members ResidueID Alignment
      1oy7_EF_0   1     2     3           4
      1g3f_AB_0   901   902   903         904
      1jd5_AB_0   1     2     3           4
      1jd6_AB_0   1     2     3           4
      1nw9_AB_0   316   317   318         319
        2i3h_BD_0   1     2     3     4
        1oxn_EF_0   1     2     3     4
        3d9t_BD_0   1     2     3     4
        2uvl_BA_0   242   243   244   245
        1sdz_AB_0   1     2     3     4
        2vm5_AA_0   139   140   141   142
        1g73_CB_0   1     2     3     4
        1oxn_AD_0   73    74    75    76

Alignment Occupancy       1     1     1     1
Gap in betw Columns       0     0     0

SLIM   RegEx        [AS][VTMEI][PARLV][FVIYSW]
SLIM   Coverage           0.769230769230769
SLIM   PSSM Match Cutoff 17.9757419493199
SLIM   I=181997 Im=3032 Id=49 Idm=3
SLIM   PSSM p-value 0.0393207625693561

PSSM Listing
Pos 0 A(3.841) S(2.370) G(0) C(-0.10) T(-0.31) N(-0.31) E(-0.76) Q(-0.76) K(-0.76) P(-1) R(-1) M(-1) I(-1.10) L(-
1.10) D(-1.31) H(-1.76) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 1 M(3.186) E(3.141) V(3.057) T(2.555) I(2.516) L(1.025) D(0.584) Q(0.455) S(-0.10) K(-0.27) P(-0.27) G(-0.39)
A(-0.49) N(-0.84) H(-0.84) F(-0.88) R(-1.14) C(-1.15) Y(-1.27) W(-2.31)
Gap (0)
Pos 2 P(6.227) R(3.135) A(2.559) V(1.765) L(1.512) I(0.801) T(0.348) K(0.345) M(-0.01) S(-0.13) Q(-0.36) E(-0.86)
N(-0.87) G(-1.14) C(-1.14) H(-1.36) D(-1.48) F(-1.88) Y(-2.02) W(-3.17)
Gap (0)
Pos 3 W(8.435) Y(5.168) F(4.849) I(2.596) V(2.580) S(1.462) L(0.765) M(0.382) H(0.268) A(-0.57) T(-1.11) N(-1.32)
C(-1.41) Q(-1.61) E(-1.85) K(-1.85) G(-2.08) D(-2.11) R(-2.43) P(-2.50)
//

===============================
 SLIM 49
===============================
ID           Bacterioc_AS-48.clust.0.15.0
Center             1o82_DC_0
AvSimToCtr 0.454
AvRMSDToCtr 2.754 A
Size         7
NumDistinct 4
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            ENTEROCOCCUS FAECALIS (4)
Conservation        1

Members
      1o82_AB_0 1o83_AB_0 1o82_CD_0 1o83_CD_0 1o82_BA_0 1o83_BA_0 1o83_DC_0

Peptides

PartnerDomains
      Bacterioc_AS-48 (1o82_DC_0,1o82_AB_0)

Dist Members Intf Alignment
      1o82_DC_0   A     V       G      T    N     V     W      T    S      I    A     V
      1o82_AB_0   P             A      V          T     W      T    I           A     V
      1o83_AB_0         P       A      V    T           T           S      I    A     V
      1o83_CD_0         P       A      V          T     W      T    I           A     V

Dist Members ResidueID Alignment
      1o82_DC_0   10    11    13       14   17    18    24     27   30     31   34    35
      1o82_AB_0   8           10       11         14    24     27   31          34    35
      1o83_AB_0         8     10       11   14          27          30     31   34    35
      1o83_CD_0         8     10       11         14    24     27   31          34    35

Alignment Occupancy       0.5   0.75   1    1     0.5   0.75   1    0.75   1    0.5   1     1
Gap in betw Columns       0     1      0    2     0     5,9    2    2,3    0    2     0

SLIM   RegEx        [AP][PV].[AG][VT]..[TN][TV]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 18.3104996997851
SLIM   I=181997 Im=9510 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 P(5.614) A(2.620) S(-0.25) T(-0.25) G(-1.25) C(-1.33) N(-1.69) E(-1.69)   Q(-1.69) K(-1.69) D(-2.07) R(-2.07)
M(-2.07) I(-2.25) L(-2.25) H(-2.69) V(-2.69) Y(-3.07) F(-3.25) W(-4.07)
Gap (0)
Pos 1 P(6.306) V(2.618) I(1.618) T(0.331) M(-0.29) L(-0.35) A(-0.83) S(-1.52)   E(-1.52) Q(-1.52) K(-1.52) N(-1.62)
D(-1.62) C(-2.14) Y(-2.14) F(-2.29) G(-2.52) H(-2.52) R(-2.52) W(-3.83)
Gap (1)
Pos 2 G(4.621) A(3.718) S(0.827) T(-0.04) C(-0.27) V(-1.04) P(-1.17) N(-1.17)   E(-1.17) Q(-1.17) R(-1.17) K(-1.17)
M(-1.24) I(-1.27) L(-1.27) D(-1.64) H(-2) F(-2.17) Y(-2.17) W(-2.64)
Gap (0)
Pos 3 V(3.713) I(2.714) T(2.621) M(0.756) L(0.728) A(-0.17) S(-0.24) P(-0.24)   G(-0.33) D(-0.33) C(-1) E(-1.04) Q(-
1.04) K(-1.04) F(-1.17) Y(-1.17) N(-1.24) H(-1.24) R(-2.04) W(-3)
Gap (2)
Pos 4 N(4.616) T(2.631) S(0.306) D(0.306) G(-0.07) P(-0.33) E(-0.69) Q(-0.69) K(-0.69) H(-1.07) R(-1.07) A(-2.07)
M(-2.07) C(-2.25) Y(-2.69) I(-3.07) L(-3.07) V(-3.07) F(-3.07) W(-4.07)
Gap (0)
Pos 5 T(3.308) V(2.618) I(1.627) S(0.331) P(0.331) G(0.315) D(0.315) M(-0.14) L(-0.29) E(-0.62) Q(-0.62) K(-0.62)
N(-0.66) H(-0.66) A(-0.83) C(-1.28) R(-1.62) F(-1.83) Y(-1.83) W(-3.28)
//

===============================
 SLIM 50
===============================
ID           Beta_elim_lyase.clust.0.2.0
Center             1gc2_CD_1
AvSimToCtr 0.628
AvRMSDToCtr 0.554 A
Size         28
NumDistinct 6
FracDDI            0.333333333333333
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (1), NICOTIANA TABACUM (1), PSEUDOMONAS PUTIDA (1), SACCHAROMYCES CEREVISIAE (1)
Conservation       0.25

Members
      1gc2_AB_1 2o7c_AC_1 2o7c_CA_1 2o7c_BD_1 2o7c_DB_1 1pg8_AD_1 1pg8_DA_1 1pg8_BC_1 1pg8_CB_1 1ukj_AC_1
      1ukj_DB_1 1ukj_BD_1 1ukj_CA_1 1n8p_AD_1 1n8p_CB_1 1n8p_BC_1 1n8p_DA_1 1qgn_AD_1 1qgn_DA_1 1qgn_FG_1
      1qgn_GF_1 1qgn_CB_1 1qgn_BC_1 1qgn_EH_1 1qgn_HE_1 3e6g_AD_1 3e6g_CB_1 3cog_DA_1

Peptides

PartnerDomains
      Cys_Met_Meta_PP (1gc2_CD_1,1n8p_AD_1)
      Beta_elim_lyase (1n8p_AD_1)

Dist Members Intf   Alignment
      1gc2_CD_1     V     S     H   D     H     L     R     G     K     T     N     L     R     D     R     A       E
      L
      1n8p_AD_1     I     N     H   D     F     L     R     G     K     T           L     R           Q     I
      I
      1qgn_AD_1     T     G     H   D           L     R     G     K     T     H     L     R           Q     C       E
      V
      3e6g_AD_1           N     H   D           L     R     G     K     T           L     R           A
      3e6g_CB_1           N     H   D           L     R     G     K     T           L     R           A     V
      I
      3cog_DA_1     V     N     H   D           L     R     G           T     H     V     R           K     F
      L
Dist Members ResidueID Alignment
      1gc2_CD_1   29    214   216     218   250   254   257   258   260   261   263   264   265   267   268   344
      345   380
      1n8p_AD_1   26    206   208     210   241   245   248   249   251   252         255   256         259   338
      374
      1qgn_AD_1   78    264   266     268         302   305   306   308   309   311   312   313         316   392
      393   428
      3e6g_AD_1         213   215     217         253   256   257   259   260         263   264         267
      3e6g_CB_1         213   215     217         253   256   257   259   260         263   264         267   343
      379
      3cog_DA_1   38    215   217     219         254   257   258         261   263   264   265         268   344
      380

Alignment Occupancy     0.666 1       1     1     0.333 1     1     1     0.833 1     0.5   1     1     0.166 1
      0.833 0.333 0.833
Gap in betw Columns     162,185       1     1     33,35 2     0     1     0     1     0     0     2     75,78 27,35

SLIM   RegEx        L..RG.KT.[HN][LV]R..[AQKR]
SLIM   Coverage           0.833333333333333
SLIM   PSSM Match Cutoff 20.3887300279019
SLIM   I=181997 Im=6624 Id=1 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (2)
Pos 1 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 2 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (1)
Pos 3 K(4.817) R(1.817) E(0.817) Q(0.817) S(-0.18) T(-0.18) N(-0.18) P(-1.18) A(-1.18) D(-1.18) H(-1.18) M(-1.18)
G(-2.18) L(-2.18) Y(-2.18) C(-3.18) I(-3.18) V(-3.18) F(-3.18) W(-3.18)
Gap (0)
Pos 4 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (1)
Pos 5 H(6.901) N(4.221) Y(0.910) D(0.306) S(-0.55) T(-0.69) E(-0.69) Q(-0.69) R(-0.69) K(-1.24) G(-1.55) F(-2.03)
P(-2.69) A(-2.69) M(-2.69) V(-2.92) W(-3.03) C(-3.69) I(-3.69) L(-3.69)
Gap (0)
Pos 6 L(3.827) V(3.251) I(2.251) M(1.888) F(-0.11) A(-0.74) C(-1) Y(-1) S(-2) T(-2) Q(-2) K(-2) R(-2.11) W(-2.11)
P(-2.74) E(-2.74) N(-3) H(-3) G(-3.74) D(-3.74)
Gap (0)
Pos 7 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (2)
Pos 8 Q(3.921) R(3.295) K(3.295) A(2.914) E(1.164) S(0.383) N(-0.23) T(-0.37) H(-0.50) M(-0.54) D(-0.77) G(-0.85)
C(-1.00) P(-1.11) L(-1.54) Y(-1.54) I(-1.85) V(-2.23) F(-2.54) W(-2.54)
//

===============================
 SLIM 51
===============================
ID           C1-set.clust.0.2.12
Center             1lhz_AB_1
AvSimToCtr 0.495
AvRMSDToCtr 0.800 A
Size         59
NumDistinct 6
FracDDI            0.833333333333333
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (6)
Conservation       1

Members
      1a8j_HL_1   1mcf_BA_1   1dcl_AB_1   1mcc_BA_1   1mcb_BA_1   1mce_BA_1   1mcd_BA_1   1mck_BA_1   2mcg_12_1   1mcl_BA_1
      1mcs_BA_1   1mcn_BA_1   1mch_BA_1   1mcr_BA_1   1a8j_LH_1   1dcl_BA_1   1mcf_AB_1   1mcb_AB_1   1mcc_AB_1   1mcd_AB_1
      1mck_AB_1   1mcs_AB_1   1mce_AB_1   1mcn_AB_1   2mcg_21_1   1mch_AB_1   1mcl_AB_1   1mci_AB_1   1mcj_AB_1   1mcq_AB_1
      1mcr_AB_1   1bjm_AB_1   3bjl_AB_1   1bjm_BA_1   1jvk_AB_1   1lgv_AB_1   1jvk_BA_1   1lgv_BA_1   1lhz_BA_1   4bjl_AB_1
      3bjl_BA_1   4bjl_BA_1   2omb_DC_1   2omb_CD_1   1mci_BA_1   1mcj_BA_1   2h3n_BD_0   1lil_AB_1   1lil_BA_1   2old_AB_1
      2omb_AB_1   2omn_AB_1   2old_BA_1   2omb_BA_1   2omn_BA_1   1mcq_BA_1   2h3n_DB_0   3mcg_12_1   3mcg_21_1

Peptides

PartnerDomains
      C1-set (1lhz_AB_1,2omb_DC_1,2omb_CD_1,1lil_AB_1,2h3n_DB_0)

Dist Members Intf   Alignment
      1lhz_AB_1     T     L       F       P     S       E     T       V       L     S       E     T       T       K     S     K   Q
      S     N       A     A       S       Y     T
      2omb_DC_1     T     L       F       P     S             T       V       L     S       E     T       T       T     S         Q
      S     N       A     A       S       Y
      2omb_CD_1     T     L       F       P     S             T       V       L     S       E     T       T       T     S         Q
      S     N       A             S       Y     T
      2h3n_BD_0     T     L       F       P     S       E     T       V       L     N                     T       T     S     K   Q
      S     N       A     A       S       Y     T
        1lil_AB_1   T     L       F   P     S     E     T     V     L     S     E     T     T     T     S           Q
        S     N     A     A       S   Y     T
        2h3n_DB_0   T     L       F   P     S     E     T     V     L     N     E     M     T           S           Q
                    A     A       S   Y     T

Dist Members ResidueID Alignment
      1lhz_AB_1   121   122   123     124   126   128   136   138   140   142   165   166   167   168   170   171
      172   173   174   178   179     180   182   210
      2omb_DC_1   121   122   123     124   126         136   138   140   142   165   166   167   168   170
      172   173   174   178   179     180   182
      2omb_CD_1   121   122   123     124   126         136   138   140   142   165   166   167   168   170
      172   173   174   178           180   182   210
      2h3n_BD_0   80    81    82      83    85    87    95    97    99    101               126   127   129   130
      131   132   133   137   138     139   141   169
      1lil_AB_1   116   117   118     119   121   123   131   133   135   137   160   161   162   163   165
      167   168   170   174   175     176   178   208
      2h3n_DB_0   80    81    82      83    85    87    95    97    99    101   124   125   126         129
      131               137   138     139   141   169

Alignment Occupancy       1       1   1     1     1     0.666 1     1     1     1     0.833 0.833 1     0.833 1
      0.333 1     0.833   0.833   1   0.833 1     1     0.833
Gap in betw Columns       0       0   0     1     1     7     1     1     1     22    0     0     0     1     1     0
      0     3     0       0       1   27

SLIM   RegEx        E[TM]T[TK].S.QSN.{3}AAS.Y
SLIM   Coverage           0.833333333333333
SLIM   PSSM Match Cutoff 19.9800047066356
SLIM   I=181997 Im=10363 Id=827 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(4.817) D(1.817) Q(1.817) K(0.817) S(-0.18) T(-0.18) N(-0.18) H(-0.18) R(-0.18) P(-1.18) A(-1.18) G(-2.18)
M(-2.18) Y(-2.18) I(-3.18) L(-3.18) V(-3.18) F(-3.18) W(-3.18) C(-4.18)
Gap (0)
Pos 1 T(3.596) M(3.218) S(0.627) P(0.606) G(0.599) D(0.599) L(0.278) Q(-0.18) K(-0.31) N(-0.37) E(-0.37) H(-0.37)
I(-0.61) C(-1.18) A(-1.18) R(-1.18) F(-1.35) Y(-1.88) V(-2.18) W(-2.35)
Gap (0)
Pos 2 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 3 T(3.599) K(3.234) S(0.682) P(0.627) D(0.627) G(0.606) R(0.389) E(0.113) Q(0.113) N(-0.18) H(-0.31) A(-1.18)
M(-1.18) C(-1.37) L(-2.18) Y(-2.18) I(-2.31) V(-2.31) F(-2.31) W(-3.18)
Gap (1)
Pos 4 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (1)
Pos 5 Q(5) E(2) R(1) K(1) S(0) T(0) N(0) D(0) H(0) M(0) P(-1) A(-1) Y(-1) G(-2) L(-2) V(-2) W(-2) C(-3) I(-3) F(-3)
Gap (0)
Pos 6 S(3.817) T(0.817) A(0.817) N(0.817) G(-0.18) D(-0.18) E(-0.18) Q(-0.18) K(-0.18) C(-1.18) P(-1.18) H(-1.18)
R(-1.18) M(-1.18) I(-2.18) L(-2.18) V(-2.18) F(-2.18) Y(-2.18) W(-3.18)
Gap (0)
Pos 7 N(5.817) S(0.817) D(0.817) T(-0.18) G(-0.18) E(-0.18) Q(-0.18) R(-0.18) K(-0.18) H(-1.18) P(-2.18) A(-2.18)
M(-2.18) Y(-2.18) C(-3.18) I(-3.18) L(-3.18) V(-3.18) F(-3.18) W(-4.18)
Gap (3)
Pos 8 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (0)
Pos 9 A(3.817) S(0.817) C(-0.18) G(-0.18) T(-1.18) P(-1.18) N(-1.18) E(-1.18) Q(-1.18) R(-1.18) K(-1.18) M(-1.18)
I(-1.18) L(-1.18) D(-2.18) H(-2.18) V(-2.18) F(-2.18) Y(-2.18) W(-3.18)
Gap (0)
Pos 10 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-
3)
Gap (1)
Pos 11 Y(7) F(3) H(2) W(2) Q(-1) M(-1) I(-1) L(-1) V(-1) C(-2) S(-2) T(-2) A(-2) N(-2) E(-2) R(-2) K(-2) P(-3) G(-3)
D(-3)
//

===============================
 SLIM 52
===============================
ID           C1-set.clust.0.2.2
Center             1i7u_AB_1
AvSimToCtr 0.591
AvRMSDToCtr 0.657 A
Size         461
NumDistinct 7
FracDDI            0
FracPeptides       0
FracIntra    0
Species            MUS MUSCULUS (3), HOMO SAPIENS (2), RATTUS NORVEGICUS (1), GALLUS GALLUS (1)
Conservation       0.428571428571429

Members
      1a1m_AB_1   1agb_AB_1   2bvq_AB_1   1agd_AB_1   1age_AB_1   1m6o_AB_1   3dx6_AB_1   1n2r_AB_1   1zsd_AB_1   2fyy_AB_1
      2fz3_AB_1   2nw3_AB_1   2axf_AB_1   2axg_AB_1   1syv_AB_1   1zhl_AB_1   1zhk_AB_1   2cik_AB_1   2h6p_AB_1   1xh3_AB_1
      3bwa_AB_1   3bw9_AB_1   1xr8_AB_1   1sys_AB_1   1xr9_AB_1   3c9n_AB_1   2bvo_AB_1   2hjk_AB_1   2hjl_AB_1   3bxn_AB_1
      3dx7_AB_1   1agc_AB_1   1agf_AB_1   2bsr_AB_1   2bst_AB_1   2bss_AB_1   2gj6_AB_1   3d18_AB_1   1jge_AB_1   3b3i_AB_1
      1of2_AB_1   1w0w_AB_1   3b6s_AB_1   3bp7_AB_1   3bp4_AB_1   1ogt_AB_1   1k5n_AB_1   1w0v_AB_1   2bvp_AB_1   3bgm_AB_1
      3bh9_AB_1   3d25_AB_1   1duy_AB_1   1duz_AB_1   1hhk_AB_1   1eez_AB_1   2av1_AB_1   2git_AB_1   2av7_AB_1   2clr_AB_1
      2vll_AB_1   1im3_AB_1   1im3_IJ_1   1im3_MN_1   1im3_EF_1   2f53_AB_1   1w72_DE_1   1a1n_AB_1   1b0g_AB_1   1b0g_DE_1
      1hhj_AB_1   1hhj_DE_1   1duy_DE_1   1duz_DE_1   1hhk_DE_1   3bh8_AB_1   2v2w_DE_1   2v2x_DE_1   1i7r_AB_1   1i7r_DE_1
      2v2x_AB_1   3giv_AB_1   3giv_DE_1   1eey_AB_1   1i7u_DE_1   1qr1_AB_1   2clr_DE_1   2av1_DE_1   2git_DE_1   2av7_DE_1
      1eey_DE_1   2v2w_AB_1   1i1y_AB_1   1i1y_DE_1   1qr1_DE_1   1eez_DE_1   1hhg_AB_1   1hhg_DE_1   1hhi_AB_1   1hhi_DE_1
      2c7u_AB_1   2c7u_DE_1   1i7t_AB_1   1i7t_DE_1   2p5e_AB_1   2p5w_AB_1   2pye_AB_1   1hhh_AB_1   2rfx_AB_1   1i1f_AB_1
      1i1f_DE_1   3bvn_AB_1   3hcv_AB_1   3bvn_DE_1   1e28_AB_1   1bd2_AB_1   1qew_AB_1   2vll_DE_1   1s9w_AB_1   1s9y_AB_1
      1s9x_AB_1   1zvs_AB_1   1zvs_DE_1   2bck_AB_1   2f54_AB_1   2f54_FG_1   1ao7_AB_1   1qse_AB_1   1qrn_AB_1   1qsf_AB_1
      1jf1_AB_1   1jht_AB_1   1vgk_AB_1   2bck_DE_1   2esv_AB_1   2vlj_AB_1   2vlk_AB_1   3d39_AB_1   3d3v_AB_1   2vlr_AB_1
      1b0r_AB_1   1im9_AB_1   1im9_EF_1   2bnq_AB_1   2bnr_AB_1   3gjf_AB_1   3gjf_DE_1   3gso_AB_1   3gsq_AB_1   3gsx_AB_1
      3gsu_AB_1   3gsv_AB_1   3gsr_AB_1   3hae_AB_1   3hae_PQ_1   3hae_DE_1   3hae_JK_1   1q94_AB_1   1bii_AB_1   2fwo_AB_1
      1ce6_AB_1   1qlf_AB_1   2cii_AB_1   1q94_DE_1   3gsn_HL_1   1a1o_AB_1   3dx8_AB_1   1e27_AB_1   1uxs_AB_1   1uxw_AB_1
      3dtx_AB_1   2a83_AB_1   3czf_AB_1   1hsa_AB_1   1hsa_DE_1   1hsb_AB_1   1s8d_AB_1   1t1x_AB_1   1t21_AB_1   1t1y_AB_1
      1t1w_AB_1   1t20_AB_1   1t1z_AB_1   1ydp_AB_1   1t22_AB_1   3fqn_AB_1   3fqr_AB_1   3fqt_AB_1   3fqu_AB_1   3fqw_AB_1
      3fqx_AB_1   3ft3_AB_1   3ft4_AB_1   3bo8_AB_1   3ft2_AB_1   1oga_AB_1   2ak4_AB_1   2ak4_FG_1   2ak4_KL_1   2ak4_QR_1
      2nx5_AB_1   3bzf_AB_1   3bzf_CD_1   1a9e_AB_1   1cg9_AB_1   1jgd_AB_1   2dyp_AB_1   3bze_CD_1   1mi5_AB_1   3ffc_AB_1
      3ffc_FG_1   1m05_AB_1   1m05_CD_1   1w72_AB_1   1kpr_AB_1   1kpr_CD_1   2hla_AB_1   3hla_AB_1   1fo0_HL_1   2zok_CD_1
      2zok_GH_1   1kj2_HL_1   1rjy_AB_1   1rjy_DE_1   2clv_HP_1   1rjz_DE_1   1t0m_AB_1   1t0m_DE_1   1t0n_AB_1   1t0n_DE_1
      2clv_AB_1   2clz_AB_1   2clz_HP_1   2zsv_AB_1   2zsv_CD_1   1wbz_AB_1   1wbz_CD_1   1rjz_AB_1   3cc5_AB_1   3cc5_DE_1
      2zsw_AB_1   2zsw_GH_1   2zsw_CD_1   2zsw_EF_1   3cpl_CD_1   1inq_AB_1   1juf_AB_1   3cpl_AB_1   1kj2_IM_1   2zol_AB_1
      2zol_CD_1   1kj3_HL_1   1kj3_IM_1   1nan_HP_1   1nan_LI_1   1s7u_AB_1   1s7x_AB_1   1s7w_AB_1   1s7w_GH_1   1s7x_GH_1
      1s7w_DE_1   1s7x_DE_1   3ch1_AB_1   3ch1_DE_1   3ch1_GH_1   3ch1_JK_1   1n3n_AB_1   1n3n_CD_1   1n3n_EF_1   1n3n_GH_1
      3cvh_AB_1   2f74_AB_1   2f74_DE_1   1nez_AB_1   2zok_AB_1   2zok_EF_1   1mhc_AB_1   1mhc_DE_1   1ed3_AB_1   1k8d_AB_1
      1mwa_HL_1   1s7v_AB_1   1s7v_DE_1   1x7q_AB_1   2hn7_AB_1   3gsw_AB_1   3bhb_AB_1   3cch_AB_1   3cch_DE_1   3cch_GH_1
      3cch_JK_1   2nx5_FG_1   2nx5_QR_1   1zt7_AB_1   1zt7_CD_1   1hoc_AB_1   1kjm_AB_1   1zs8_AB_1   1zs8_CD_1   1zs8_IJ_1
      1zs8_GH_1   1zs8_EF_1   3hg1_AB_1   1g6r_HL_1   1g6r_IM_1   1bqh_AB_1   1bqh_DE_1   1mwa_IM_1   1p4l_AB_1   3c8k_AB_1
      1ed3_DE_1   2ve6_AB_1   2ve6_JK_1   1efx_AB_1   1s7u_GH_1   1s7w_JK_1   1s7x_JK_1   1akj_AB_1   1lp9_AB_1   2uwe_AB_1
      2jcc_AB_1   1lp9_HI_1   2j8u_AB_1   2j8u_HI_1   2jcc_HI_1   2uwe_HI_1   1tvb_AB_1   2gtz_AB_1   2gt9_AB_1   2gtw_AB_1
      2guo_AB_1   1tvh_AB_1   2guo_DE_1   2gt9_DE_1   1tvb_DE_1   2gtw_DE_1   2gtz_DE_1   1tvh_DE_1   1qvo_AB_1   1qvo_DE_1
      1r3h_EF_1   2ve6_GH_1   2ckb_HL_1   2ckb_IM_1   1ffn_AB_1   1ffn_DE_1   1jpg_AB_1   2ol3_HL_1   1ffp_AB_1   1ffp_DE_1
      1wbx_AB_1   1yn7_AB_1   3buy_AB_1   1fg2_AB_1   1fg2_DE_1   1n5a_DE_1   1n5a_AB_1   1i4f_AB_1   1n5a_JK_1   1s7u_DE_1
      1s7u_JK_1   1zhb_AB_1   1zhb_DE_1   1zhb_JK_1   2mha_CD_1   1nam_HL_1   1ld9_AB_1   1ld9_DE_1   1qo3_AB_1   3dmm_AB_1
      1ffo_AB_1   1ffo_DE_1   1jpf_AB_1   1kjv_AB_1   1mhe_AB_1   1mhe_CD_1   3cvh_MN_1   1r3h_AB_1   2nx5_KL_1   3bze_AB_1
      3bze_EF_1   1n5a_GH_1   1zhb_GH_1   1qqd_AB_1   2vlr_FG_1   1fzj_AB_1   1rk1_AB_1   1g7p_AB_1   1kpu_AB_1   1g7q_AB_1
      1s7q_AB_1   1s7s_AB_1   1fzk_AB_1   1lek_AB_1   1lk2_AB_1   1fzo_AB_1   1kpv_AB_1   1s7t_AB_1   1kbg_HL_1   1leg_AB_1
      1fzm_AB_1   1osz_AB_1   2fo4_AB_1   1n59_AB_1   1n59_CD_1   1rk0_AB_1   1vad_AB_1   2vaa_AB_1   2vab_AB_1   1vac_AB_1
      1s7r_AB_1   1s7r_DE_1   2ve6_DE_1   1s7t_DE_1   1zt1_AB_1   1r3h_GH_1   1r3h_CD_1   1a6z_AB_1   1a6z_CD_1   1de4_AB_1
      1de4_GH_1   1de4_DE_1   1cd1_AB_1   1cd1_CD_1   1z5l_AB_1   1z5l_CD_1   2akr_AB_1   2akr_CD_1   2q7y_AB_1   2q7y_CD_1
      1zhn_AB_1   2fik_AB_1   2gaz_AB_1   3he6_AB_1   3he7_AB_1   1gzp_AB_1   1gzq_AB_1   2h26_AB_1   1zt4_AB_1   1zt4_CD_1
      1onq_AB_1   1onq_CD_1   1xz0_AB_1   1xz0_CD_1   3huj_AB_1   3huj_CD_1   3dbx_AB_0   1exu_AB_1   1i1a_AB_1   3fru_AB_1
      3fru_CD_1   3fru_EF_1   3bev_AB_1   3bew_AB_1   3bew_DE_1   3e6h_AB_1   3d2u_AB_1   3d2u_EF_1   3e6f_AB_1   1pqz_AB_1
      1u58_AB_1

Peptides

PartnerDomains

Dist Members Intf Alignment
      1i7u_AB_1   K     Q         Y       S     R       H     P       N       Y     S       L     D       M
        1bii_AB_1   Q     Q     Y     S       R     H     P     N      Y     T     L
        2fwo_AB_1   Q     Q     Y     S       R     H     P     N      Y     T     L     D     M
        1ed3_AB_1   Q     Q     Y     S       R     H     P     N      Y     S     L     D     M
        2gaz_AB_1         Q     Y     S       R           H     N      Y           L     R
        1onq_AB_1   K     Q     Y     S       R           H     N      Y           L
        3bev_AB_1         Q     Y     S       R     F     P     N      F           L

Dist Members ResidueID Alignment
      1i7u_AB_1   6     8     10      11      12    13    14    24     26    28    65    98    99
      1bii_AB_1   306   308   310     311     312   313   314   324    326   328   365
      2fwo_AB_1   6     8     10      11      12    13    14    24     26    28    65    98    99
      1ed3_AB_1   6     8     10      11      12    13    14    24     26    28    65    98    99
      2gaz_AB_1         8     10      11      12          13    24     26          65    97
      1onq_AB_1   6     8     10      11      12          13    24     26          65
      3bev_AB_1         7     9       10      11    12    13    23     25          64

Alignment Occupancy       0.714 1     1       1     1     0.714 1      1     1     0.571 1     0.571 0.428
Gap in betw Columns       1     1     0       0     0     0     9,10   1     1     36    31,32

SLIM   RegEx        [QK].Q.YSR[HF][PH]
SLIM   Coverage           0.571428571428571
SLIM   PSSM Match Cutoff 19.974444547111
SLIM   I=181997 Im=11094 Id=827 Idm=8
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(4.164) K(3.774) E(1.372) R(1.186) S(-0.33) T(-0.33) N(-0.33) D(-0.62) H(-0.62) M(-0.62) P(-1.33) A(-1.33)
Y(-1.62) G(-2.33) L(-2.33) V(-2.62) W(-2.62) C(-3.33) I(-3.33) F(-3.33)
Gap (1)
Pos 1 Q(5) E(2) R(1) K(1) S(0) T(0) N(0) D(0) H(0) M(0) P(-1) A(-1) Y(-1) G(-2) L(-2) V(-2) W(-2) C(-3) I(-3) F(-3)
Gap (1)
Pos 2 Y(7) F(3) H(2) W(2) Q(-1) M(-1) I(-1) L(-1) V(-1) C(-2) S(-2) T(-2) A(-2) N(-2) E(-2) R(-2) K(-2) P(-3) G(-3)
D(-3)
Gap (0)
Pos 3 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 4 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 5 H(7.440) F(4.057) Y(1.958) N(0.444) D(0.444) T(-0.52) E(-0.54) Q(-0.54) R(-0.54) W(-0.76) S(-1.47) M(-1.51)
K(-1.52) I(-1.76) L(-1.76) V(-2.04) A(-2.33) G(-2.47) P(-2.52) C(-3.04)
Gap (0)
Pos 6 H(6.747) P(6.663) T(0.800) Y(0.763) N(0.038) D(0.038) E(-0.60) Q(-0.60) R(-0.96) S(-1) K(-1) A(-1.19) G(-2)
M(-2) V(-2) F(-2.13) W(-2.96) C(-3) I(-3) L(-3)
//
===============================
 SLIM 53
===============================
ID           CMAS.clust.0.15.1
Center             3ccf_BA_0
AvSimToCtr 0.350
AvRMSDToCtr 1.121 A
Size         5
NumDistinct 4
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            LECHEVALIERIA AEROCOLONIGENES (2), ANABAENA VARIABILIS ATCC 29413 (1), MYCOBACTERIUM TUBERCULOSIS
(1)
Conservation       0.5

Members
      1l1e_AB_0 1l1e_BA_0 3bus_AB_1 3bus_BA_1 3ccf_AB_0

Peptides

PartnerDomains
      CMAS (3ccf_BA_0,1l1e_AB_0)

Dist Members Intf Alignment
      3ccf_BA_0   S     I        G      E      V     N      E      D      V      T     Y     A     A     L     R
      1l1e_AB_0                                                    R      V      T     A     V     Q     S
      3bus_AB_1                                E            R             V      T     S     T     V     D
      3bus_BA_1                         D      E            R      V      V      T     S     T     V     D

Dist Members ResidueID Alignment
      3ccf_BA_0   170   171   172       173    175   176    179    184    185    186   187   188   189   190   250
      1l1e_AB_0                                                    221    222    223   224   225   226   227
      3bus_AB_1                                200          204           210    211   212   213   214   215
      3bus_BA_1                         197    200          204    209    210    211   212   213   214   215

Alignment Occupancy       0.25   0.25   0.25   0.5   0.75   0.25   0.75   0.75   1     1     1     1     1     1     0.25
Gap in betw Columns       1,2    3      4      0     0      0      0      0      0

SLIM   RegEx        [DE].{1,2}[EV].{3}[RE].{4}[DRV]VT[SAY][TAV][VAQ][DSL]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 24.2519499001583
SLIM   I=181997 Im=7242 Id=0 Idm=0
SLIM   PSSM p-value 1
PSSM Listing
Pos 0 D(4.631) E(3.662) Q(0.740) T(-0.07) N(-0.07) K(-0.25) S(-0.69) H(-1.07) R(-1.25) P(-1.69) A(-2.07) G(-2.07)
M(-3.07) Y(-3.07) I(-3.69) V(-3.69) F(-3.69) C(-4.07) L(-4.07) W(-4.07)
Gap (1,2)
Pos 1 E(4.307) V(2.615) I(1.618) Q(1.315) D(1.310) K(0.331) M(-0.29) L(-0.35) S(-0.62) T(-0.62) N(-0.66) H(-0.66)
R(-0.66) A(-0.83) P(-1.52) Y(-1.83) F(-2.14) C(-2.29) G(-2.52) W(-3.28)
Gap (3)
Pos 2 R(4.310) E(3.627) K(1.475) Q(1.165) D(0.649) N(-0.28) H(-0.28) S(-0.83) T(-0.83) A(-1.28) M(-1.52) P(-1.83)
G(-2.28) Y(-2.28) L(-2.52) I(-3.28) V(-3.28) F(-3.28) W(-3.28) C(-3.52)
Gap (4)
Pos 3 D(4.614) R(3.614) V(2.615) I(1.618) E(0.756) K(0.679) Q(-0.03) N(-0.05) T(-0.21) M(-0.24) L(-0.33) S(-0.97)
A(-0.97) H(-1.03) P(-1.83) G(-1.97) Y(-1.97) C(-2.14) F(-2.14) W(-3.52)
Gap (0)
Pos 4 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (0)
Pos 5 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 6 Y(5.614) S(3.332) A(2.710) F(1.633) H(0.725) W(0.633) T(0.395) N(0.395) G(-0.27) Q(-0.37) E(-0.46) K(-0.46)
D(-0.60) C(-0.75) M(-1) R(-1.17) P(-1.24) I(-1.37) L(-1.37) V(-1.64)
Gap (0)
Pos 7 T(3.311) A(2.645) V(2.621) I(1.645) S(0.728) G(0.483) P(0.395) D(0.340) M(-0.04) L(-0.17) E(-0.46) Q(-0.46)
K(-0.46) N(-0.50) H(-0.60) C(-0.64) R(-1.24) F(-1.64) Y(-1.64) W(-3)
Gap (0)
Pos 8 Q(3.617) V(3.309) A(2.656) I(2.317) E(0.696) M(0.531) L(0.395) S(-0.00) K(-0.17) R(-0.22) C(-0.80) T(-0.89)
N(-1.00) Y(-1.17) G(-1.17) D(-1.17) H(-1.17) P(-1.37) F(-1.46) W(-2.64)
Gap (0)
Pos 9 D(5.308) S(2.652) L(2.616) V(1.625) E(1.375) T(0.728) N(0.718) M(0.675) I(0.645) A(-0.17) Q(-0.24) K(-0.75)
G(-0.82) F(-1.17) P(-1.24) H(-1.24) C(-1.56) R(-1.64) Y(-1.89) W(-2.89)
//

===============================
 SLIM 54
===============================
ID           CMD.clust.0.15.0
Center             2prr_IH_0
AvSimToCtr 0.355
AvRMSDToCtr 1.552 A
Size         55
NumDistinct 16
FracDDI            0.125
FracPeptides       0
FracIntra    0
Species           MESORHIZOBIUM LOTI MAFF303099 (6), BURKHOLDERIA XENOVORANS LB400 (2), METHANOCALDOCOCCUS
JANNASCHII (2), PSEUDOMONAS AERUGINOSA (1), AGROBACTERIUM TUMEFACIENS (1), RALSTONIA EUTROPHA JMP134 (1),
DEINOCOCCUS GEOTHERMALIS (1)
Conservation      0.428571428571429

Members
      2gmy_AB_0   2gmy_BA_0   2gmy_EF_0   2gmy_FE_0   2gmy_CD_0   2gmy_DC_0   2ijc_AF_0   2ijc_ED_0   2ijc_FA_0   2ijc_HG_0
      2ijc_BC_0   2ijc_CB_0   2ijc_DE_0   2ijc_GH_0   2oyo_AB_0   2oyo_BA_0   3bey_AD_0   3bey_DA_0   3bey_BF_0   3bey_EC_0
      3bey_CE_0   3bey_FB_0   3d7i_AC_0   3d7i_CA_0   2q0t_AB_0   2q0t_BC_0   2q0t_CA_0   2q0t_AC_2   2q0t_BA_2   2q0t_CB_2
      2prr_AB_0   2prr_CG_0   2prr_GC_0   2prr_BA_0   2prr_DE_0   2prr_ED_0   2prr_FJ_0   2prr_JF_0   2prr_HI_0   2prr_LK_0
      2prr_KL_0   2pfx_AB_0   2pfx_BA_0   3c1l_AB_1   3c1l_EF_1   3c1l_GH_1   3c1l_BA_1   3c1l_FE_1   3c1l_HG_1   3c1l_LK_1
      3c1l_KL_1   3c1l_CD_1   3c1l_IJ_1   3c1l_JI_1   3c1l_DC_1

Peptides

PartnerDomains
      DUF1128 (3c1l_BA_1,3c1l_KL_1)

Dist Members Intf   Alignment
      2prr_IH_0     R     D       E       A     F       A     Y       A       L     K       S     H       W       D     A     L
      2gmy_AB_0     S     E       A       A     V             L       Y                     I             V       K     V
      2ijc_AF_0           D       A       A             G     L       A
      2oyo_AB_0     N     E       Q       A     W       N     Y       L       L     G                             E     Q     L
      3bey_AD_0     L     E       V       S     F       N     F       A       V
      3d7i_AC_0     Y     D       L       I             K     L       T
      3d7i_CA_0     Y     D       L       I             K     L       T       V
      2q0t_AB_0     D     D       L       A     Y       E     F       V
      2q0t_AC_2     D     R       F       A     Y       K     F       V             R                                         I
      2pfx_AB_0     N     E       K       A     F       A             D       L     E       S     A       W       D
      3c1l_AB_1           K       K       A     F       D     I       D                                   W       D
      3c1l_BA_1     D     K       K       A     F       D     I       D                                   W       D
      3c1l_KL_1     D     K       K       A             D     I       D       L                           W       D
      3c1l_CD_1           K                     A             I       D                                   W
      3c1l_IJ_1                   K       A     F             I       D                                   R       W     D     R
      3c1l_JI_1                                               I                             P     A       W

Dist Members ResidueID Alignment
      2prr_IH_0   47    49    50          53    54      56    57      60      61    64      137   138     159     160   163   170
      2gmy_AB_0   11    13    14          17    18            21      24                    98            121     122   125
      2ijc_AF_0         13    14          17            20    21      24
      2oyo_AB_0   51    53    54          57    58      60    61      64      65    70                            164   167   174
      3bey_AD_0   12    14    15          18    19      21    22      25      26
      3d7i_AC_0   18    20    21          24            27    28      31
      3d7i_CA_0   18    20    21          24            27    28      31      32
      2q0t_AB_0   163   165   166         169   170     172   173     176
        2q0t_AC_2   35    37    38    41    42    44    45     48          52                                    236
        2pfx_AB_0   46    48    49    52    53    55           59    60    64    136    137    158   159
        3c1l_AB_1         45    46    49    50    52    53     56                              155   156
        3c1l_BA_1   43    45    46    49    50    52    53     56                              155   156
        3c1l_KL_1   43    45    46    49          52    53     56    57                        155   156
        3c1l_CD_1         46                49          53     56                              155
        3c1l_IJ_1               46    49    50          53     56                              152   155   156   169
        3c1l_JI_1                                       53                       133    134    155

Alignment Occupancy       0.687 0.875 0.875 0.875 0.687 0.75   0.937 0.937 0.375 0.25   0.25   0.187 0.562 0.5   0.25
      0.25
Gap in betw Columns       1     0     2     0     1     0      2     95,98 0,2

SLIM   RegEx        [DNYSRL].[DKER][KLAFQEV]..[AIS][FYAWV].[DKANGE][ILFY]..[DATVLY]
SLIM   Coverage           0.8125
SLIM   PSSM Match Cutoff 25.3183668212161
SLIM   I=181997 Im=7616 Id=1 Idm=1
SLIM   PSSM p-value 0.0418468436292906

PSSM Listing
Pos 0 Y(4.921) D(4.617) N(3.938) R(2.249) S(1.398) L(1.248) F(0.956) E(0.750)    V(0.286) H(0.139) T(0.022) W(-0.05)
K(-0.26) Q(-0.41) M(-0.53) I(-0.61) G(-1.21) A(-1.26) P(-1.89) C(-2.46)
Gap (1)
Pos 1 D(4.852) E(3.692) K(3.647) R(2.434) Q(1.101) N(0.344) T(0.316) S(-0.17)    H(-0.65) P(-1.17) A(-1.38) G(-1.65)
M(-1.80) Y(-2.38) L(-2.80) I(-3.13) V(-3.13) F(-3.13) C(-3.33) W(-3.38)
Gap (0)
Pos 2 K(3.845) F(3.237) Q(2.367) E(2.365) L(2.357) V(1.980) A(1.963) I(1.019)    R(0.962) M(0.615) Y(0.363) S(-0.19)
D(-0.40) T(-0.64) N(-0.69) H(-1.22) C(-1.40) W(-1.46) P(-1.48) G(-1.64)
Gap (2)
Pos 3 A(3.631) I(1.958) S(1.667) L(0.169) C(-0.27) G(-0.28) M(-0.48) V(-0.81)    T(-0.82) N(-0.84) E(-1.13) Q(-1.13)
K(-1.13) P(-1.26) R(-1.26) F(-1.48) D(-1.82) Y(-1.91) H(-2.10) W(-3.13)
Gap (0)
Pos 4 W(8.227) F(5.036) Y(4.977) V(1.283) A(1.265) I(0.532) H(0.078) M(-0.45)    L(-0.47) S(-1.38) C(-1.82) Q(-2.25)
T(-2.28) G(-2.31) E(-2.65) K(-2.65) R(-2.73) N(-2.76) P(-3.08) D(-3.28)
Gap (1)
Pos 5 D(4.337) N(3.936) K(3.340) G(3.241) E(2.429) A(1.948) R(0.502) Q(0.291)    S(0.165) T(0.095) H(-1.30) P(-1.45)
C(-1.86) M(-1.87) V(-2.23) L(-2.46) Y(-2.52) I(-2.58) F(-3.03) W(-3.41)
Gap (0)
Pos 6 Y(4.949) F(4.366) I(3.115) L(2.812) V(1.817) M(1.131) W(0.395) H(0.023)    C(-1.30) A(-1.30) S(-2.06) T(-2.06)
Q(-2.22) R(-2.54) K(-2.54) N(-2.85) E(-2.85) P(-3.19) D(-3.24) G(-3.61)
Gap (2)
Pos 7 D(5.021) Y(4.229) A(2.350) V(2.099) T(2.072) L(1.352) I(1.131) E(1.096)    F(0.354) S(0.229) N(0.207) M(-0.04)
H(-0.27) G(-0.39) Q(-0.48) P(-0.56) W(-0.69) K(-1.00) C(-1.10) R(-1.66)
//
===============================
 SLIM 55
===============================
ID           CMD.clust.0.15.7
Center             1vke_EB_0
AvSimToCtr 0.509
AvRMSDToCtr 1.271 A
Size         19
NumDistinct 6
FracDDI            0.166666666666667
FracPeptides       0
FracIntra    0
Species            METHANOBACTERIUM THERMOAUTOTROPHICUM (4), METHANOCALDOCOCCUS JANNASCHII (1), THERMOTOGA MARITIMA
MSB8 (1)
Conservation       0.666666666666667

Members
      1p8c_AE_0 1p8c_DC_0 1p8c_CF_0 1p8c_BA_0 1p8c_FD_0 1p8c_EB_0 1vke_AE_0 1vke_BA_0 1vke_CF_0 1vke_DC_0
      1vke_FD_0 2af7_AE_0 2af7_CD_0 2af7_IA_0 2af7_DF_0 2af7_GB_0 2af7_EI_0 2af7_FC_0 3d7i_AB_0

Peptides

PartnerDomains
      CMD (1vke_EB_0)

Dist Members Intf   Alignment
      1vke_EB_0     R     F     E     D     L     V     G     S     I     I     P     L     R
      2af7_AE_0     R                 I     A           F     P
      2af7_CD_0     R                 I     A                 F     P     I     N     V     L
      2af7_DF_0     R                 I     A           F           P
      2af7_GB_0     R                 I     A           F     P           I     N     V     L
      3d7i_AB_0                       R     L                       P           K

Dist Members ResidueID Alignment
      1vke_EB_0   58    81    82      85    88    89    92    93    94    96    97    99    101
      2af7_AE_0   68                  95    98          103   104
      2af7_CD_0   68                  95    98                103   104   107   108   110   111
      2af7_DF_0   68                  95    98          103         104
      2af7_GB_0   68                  95    98          103   104         107   108   110   111
      3d7i_AB_0                       83    86                      92          96

Alignment Occupancy       0.833 0.166 0.166 1     1     0.166 0.666 0.666 0.666 0.5   0.666 0.5   0.5
Gap in betw Columns       26    2     3,4   0     0     1,2   0     1     0,1

SLIM RegEx          [IDR]..[AL].{3,4}[FG][PFS][PI].{1,2}I[NKP].[VL].{0,1}[LR]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 24.5408305021315
SLIM   I=181997 Im=7296 Id=1 Idm=1
SLIM   PSSM p-value 0.0400885728885641

PSSM Listing
Pos 0 D(4.209) I(3.594) R(3.210) L(1.599) M(0.632) V(0.603) E(0.358) K(0.282)   F(-0.38) N(-0.42) Q(-0.42) T(-0.50)
A(-1.11) S(-1.14) Y(-1.28) C(-1.33) H(-1.34) P(-2.14) G(-2.34) W(-3.11)
Gap (2)
Pos 1 A(3.597) L(2.914) V(1.914) M(0.996) I(0.996) S(0.619) C(-0.23) G(-0.39)   F(-0.85) T(-1.23) Q(-1.23) R(-1.23)
K(-1.23) P(-1.33) N(-1.33) E(-1.33) Y(-1.54) H(-2.23) D(-2.33) W(-2.54)
Gap (3,4)
Pos 2 F(5.306) G(4.208) Y(2.307) W(0.323) T(-0.65) M(-0.67) I(-0.68) L(-0.68)   V(-1.04) S(-1.45) A(-1.45) H(-1.57)
D(-2.45) C(-2.57) N(-3.04) E(-3.04) Q(-3.04) R(-3.04) K(-3.04) P(-3.45)
Gap (0)
Pos 3 P(5.901) F(4.208) S(2.224) Y(1.219) T(0.323) A(-0.51) N(-0.53) W(-0.76)   D(-1.21) E(-1.21) Q(-1.21) K(-1.21)
M(-1.29) G(-1.51) I(-1.58) L(-1.58) H(-1.78) V(-2.04) R(-2.16) C(-2.29)
Gap (0)
Pos 4 P(6.306) I(2.210) T(0.323) L(0.228) M(-0.65) V(-0.65) A(-1.40) S(-1.57)   N(-1.64) D(-1.64) E(-1.64) Q(-1.64)
K(-1.64) F(-1.73) C(-2.45) Y(-2.45) H(-2.57) R(-2.57) G(-2.64) W(-4.04)
Gap (1,2)
Pos 5 I(3.306) L(1.306) M(0.306) V(0.306) F(-0.69) C(-1.69) A(-1.69) Y(-1.69)   S(-2.69) T(-2.69) P(-3.69) N(-3.69)
D(-3.69) E(-3.69) Q(-3.69) H(-3.69) R(-3.69) K(-3.69) W(-3.69) G(-4.69)
Gap (0)
Pos 6 P(5.208) N(4.903) K(3.224) R(0.462) S(0.125) D(0.028) T(-0.04) E(-0.16)   Q(-0.16) G(-0.97) H(-1.57) A(-1.78)
M(-2.04) Y(-2.57) L(-3.04) V(-3.04) C(-3.40) I(-3.40) F(-3.57) W(-4.04)
Gap (1)
Pos 7 V(3.070) L(2.303) I(2.070) M(0.759) A(-0.92) F(-1.24) C(-1.69) Y(-1.69)   S(-2.69) T(-2.69) Q(-2.69) K(-2.69)
P(-2.92) E(-2.92) R(-3.24) W(-3.24) N(-3.69) H(-3.69) G(-3.92) D(-3.92)
Gap (0,1)
Pos 8 R(3.210) L(2.902) V(1.902) M(0.925) I(0.904) K(0.244) Q(-0.69) F(-1.07)   A(-1.69) N(-1.69) E(-1.69) H(-1.69)
Y(-1.92) C(-2.03) S(-2.24) T(-2.24) W(-2.92) P(-3.24) G(-3.55) D(-3.55)
//

===============================
 SLIM 56
===============================
ID           CM_2.clust.0.15.0
Center             2ao2_BC_0
AvSimToCtr 0.393
AvRMSDToCtr 1.784 A
Size         19
NumDistinct 6
FracDDI            0
FracPeptides       0
FracIntra    0
Species             PSEUDOMONAS AERUGINOSA PAO1 (4), MYCOBACTERIUM TUBERCULOSIS H37RV (1)
Conservation        0.8

Members
      2ao2_CB_0 2f6l_AB_0 2fp2_AB_0 2fp1_AB_0 2f6l_BA_0 2fp1_BA_0 2fp2_BA_0 2gbb_AB_0 2gbb_CD_0 2gbb_BA_0
      2gbb_DC_0 2h9d_AC_0 2h9d_CA_0 3hgw_AC_0 3hgw_CA_0 2h9d_BD_0 3hgw_BD_0 2h9d_DB_0 3hgw_DB_0

Peptides

PartnerDomains

Dist Members Intf Alignment
      2ao2_BC_0   I     Y       S     F     S     K     L     P
      2gbb_AB_0   I     Y       R     R     A     L
      2h9d_AC_0         P       F           G     A     Q
      2h9d_CA_0         P       F     G           A     Q
      2h9d_BD_0         P       F     E     G     A     Q
      2h9d_DB_0         P       F     E     G           A

Dist Members ResidueID Alignment
      2ao2_BC_0   67    110   111     113   114   117   118   120
      2gbb_AB_0   61    104   105     107   108   111
      2h9d_AC_0         73    74            77    80    81
      2h9d_CA_0         73    74      77          80    81
      2h9d_BD_0         73    74      76    77    80    81
      2h9d_DB_0         73    74      76    77          80

Alignment Occupancy       0.333 1     1     0.833 0.833 0.833 0.833 0.166
Gap in betw Columns       0     1,2   0     2     0

SLIM   RegEx        [PY][FSR].{1,2}[EFRG][GAS]..[AKL][QAL]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 22.308348373051
SLIM   I=181997 Im=5099 Id=1 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 P(6.594) Y(5.901) F(1.903) H(0.937) W(0.906) T(0.619) Q(-1) S(-1.23) A(-1.23) N(-1.23) E(-1.23) K(-1.23) D(-
1.33) M(-1.54) V(-1.54) I(-1.85) L(-1.85) R(-2) G(-2.23) C(-2.54)
Gap (0)
Pos 1 F(5.594) R(3.212) Y(2.597) S(2.224) W(0.603) K(0.358) M(-0.23) L(-0.33) I(-0.36) N(-0.42) Q(-0.42) T(-0.50)
A(-0.50) H(-0.74) E(-1.00) V(-1.28) G(-1.50) D(-1.50) C(-1.83) P(-2.34)
Gap (1,2)
Pos 2 G(4.209) F(4.208) E(3.905) R(3.222) Y(1.230) Q(1.080) D(0.938) K(0.774)    T(-0.13) S(-0.53) H(-0.53) N(-0.63)
W(-0.69) A(-0.98) M(-1.26) V(-1.37) L(-1.56) I(-1.63) P(-1.76) C(-3.09)
Gap (0)
Pos 3 G(5.308) S(2.307) A(2.307) T(0.627) N(-0.54) V(-0.60) D(-0.98) E(-1.21)    Q(-1.21) K(-1.21) C(-1.37) P(-1.65)
R(-1.65) H(-1.88) M(-1.91) I(-2.37) L(-2.37) W(-2.47) F(-2.65) Y(-2.65)
Gap (2)
Pos 4 A(3.311) K(3.216) L(2.230) V(1.230) S(0.437) M(0.389) R(0.363) I(0.353)    Q(-0.41) E(-0.43) C(-0.56) G(-0.64)
T(-0.98) N(-1.02) P(-1.37) F(-1.41) Y(-1.88) H(-1.98) D(-2.02) W(-2.88)
Gap (0)
Pos 5 Q(4.307) A(2.234) L(2.222) E(1.325) V(1.234) M(0.583) R(0.366) K(0.366)    I(0.275) S(-0.02) T(-0.53) N(-0.56)
H(-0.63) D(-0.64) Y(-1.31) P(-1.37) C(-1.37) G(-1.43) F(-1.54) W(-2.31)
//

===============================
 SLIM 57
===============================
ID           CM_2.clust.0.15.1
Center             2h9d_AD_0
AvSimToCtr 0.390
AvRMSDToCtr 1.912 A
Size         7
NumDistinct 4
FracDDI            0.25
FracPeptides       0
FracIntra    0
Species            PSEUDOMONAS AERUGINOSA (3), PSEUDOMONAS AERUGINOSA PAO1 (1)
Conservation       0.75

Members
      3hgw_AD_0 2h9d_CB_0 3hgw_CB_0 2h9d_BC_0 3hgw_BC_0 2h9d_DA_0 3hgw_DA_0

Peptides

PartnerDomains
      CM_2 (2h9d_AD_0)

Dist Members Intf Alignment
      2h9d_AD_0   E     P     A     Q     H     W     I     A     E     I        K     R
      3hgw_AD_0   E           A     Q     H     W     T     A           I        K     R
      3hgw_BC_0                     Q     H     W     T     A     E     I        K     R
      3hgw_DA_0               Q     H     W     Y     T     A     E     I        K

Dist Members ResidueID Alignment
      2h9d_AD_0   45    49    80    81    84    85    87    88    89    91       92    95
      3hgw_AD_0   45          80    81    84    85    87    88          91       92    95
        3hgw_BC_0                      81     84   85    87   88     89   91     92   95
        3hgw_DA_0               81     84     85   86    87   88     89   91     92

Alignment Occupancy       0.5   0.25   0.75   1    1     1    1      1    0.75   1    1    0.75
Gap in betw Columns       34    0,2    0,2    0    0,1   0    0      1    0      2

SLIM   RegEx        [AQ].{0,2}[QH].{0,2}[HW][WY].{0,1}[TI]AE.IK..R
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 27.8190025387145
SLIM   I=181997 Im=3421 Id=1 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(3.618) A(3.310) E(0.708) S(0.475) R(-0.14) K(-0.14) G(-0.62) C(-0.66) T(-0.83) N(-0.83) M(-0.83) D(-1.14)
H(-1.14) P(-1.28) L(-1.52) I(-1.62) Y(-1.83) V(-2.28) F(-2.52) W(-2.83)
Gap (0,2)
Pos 1 H(6.614) Q(4.714) E(1.756) R(0.827) K(0.756) Y(0.752) N(0.357) D(0.357) T(0) S(-0.17) M(-0.24) P(-1.17) A(-
1.17) G(-2) V(-2) W(-2) F(-2.04) L(-2.17) C(-3) I(-3)
Gap (0,2)
Pos 2 W(9.613) H(7.712) Y(2) N(0.714) D(0.714) F(-0.04) Q(-0.24) T(-0.27) E(-0.27) R(-0.27) S(-1.24) K(-1.24) M(-
1.64) G(-2) A(-2.17) V(-2.17) P(-2.24) C(-2.64) L(-2.64) I(-3)
Gap (0)
Pos 3 W(10.71) Y(5.633) F(1.954) H(0.667) M(-1) Q(-1.64) L(-1.64) C(-2) I(-2.04) V(-2.04) G(-2.17) S(-2.64) T(-2.64)
A(-2.64) E(-2.64) R(-2.64) K(-2.64) N(-3.04) P(-3.64) D(-3.64)
Gap (0,1)
Pos 4 T(3.713) I(2.621) S(0.728) P(0.718) D(0.718) G(0.714) L(0.667) M(-0.04) V(-0.24) N(-0.27) E(-0.27) Q(-0.27)
H(-0.27) K(-0.27) C(-1) A(-1) F(-1.04) R(-1.24) Y(-1.64) W(-3)
Gap (0)
Pos 5 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (0)
Pos 6 E(4.712) D(1.712) Q(1.712) K(0.712) S(-0.28) T(-0.28) N(-0.28) H(-0.28) R(-0.28) P(-1.28) A(-1.28) G(-2.28)
M(-2.28) Y(-2.28) I(-3.28) L(-3.28) V(-3.28) F(-3.28) W(-3.28) C(-4.28)
Gap (1)
Pos 7 I(4) L(2) M(1) V(1) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) P(-3) N(-3) D(-3) E(-3) Q(-3) H(-3) R(-3) K(-3) W(-3)
G(-4)
Gap (0)
Pos 8 K(5) R(2) E(1) Q(1) S(0) T(0) N(0) P(-1) A(-1) D(-1) H(-1) M(-1) G(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (2)
Pos 9 R(4.712) K(1.712) Q(0.712) N(-0.28) E(-0.28) H(-0.28) S(-1.28) T(-1.28) A(-1.28) M(-1.28) P(-2.28) G(-2.28)
D(-2.28) L(-2.28) Y(-2.28) C(-3.28) I(-3.28) V(-3.28) F(-3.28) W(-3.28)
//

===============================
 SLIM 58
===============================
ID           CN_hydrolase.clust.0.3.0
Center             1uf5_BA_0
AvSimToCtr 0.708
AvRMSDToCtr 0.404 A
Size         25
NumDistinct 4
FracDDI            0
FracPeptides       0
FracIntra    0
Species            PYROCOCCUS HORIKOSHII OT3 (2), AGROBACTERIUM TUMEFACIENS (1)
Conservation       0.666666666666667

Members
      1erz_AB_0 1erz_BA_0 1uf4_BA_0 1uf4_AB_0 1uf5_AB_0 1uf7_AB_0 1uf8_AB_0 1uf8_BA_0 1uf7_BA_0 2ggl_BA_0
      2ggl_CD_0 2ggl_AB_0 2ggl_DC_0 1fo6_AB_0 1fo6_BA_0 1fo6_CD_0 1fo6_DC_0 2ggk_AB_0 2ggk_DC_0 2ggk_BA_0
      2ggk_CD_0 1j31_AB_0 1j31_CD_0 1j31_BA_0 1j31_DC_0

Peptides

PartnerDomains

Dist Members Intf   Alignment
      1uf5_BA_0     W     P     E   R     Y     Q     I     F     N     F         Q     H     R     Q     H     Y     L
      I
      2ggl_BA_0     W     P     E   R     Y     Q     I     F     N     F         A     H     R     Q     H     Y     L
      I
      1j31_AB_0     F     P     E   R     L     E                                       D     R     R     Y     Y
      1j31_DC_0     F     P     E   R     L     E                                       D     R     R     Y     Y     F

Dist Members ResidueID Alignment
      1uf5_BA_0   176   177   178   181   224   225   285   286   287   288       290   291   292   293   296   297
      299   300
      2ggl_BA_0   177   178   179   182   225   226   286   287   288   289       291   292   293   294   297   298
      300   301
      1j31_AB_0   151   152   153   156   186   187                                     254   255   256   259   260
      1j31_DC_0   151   152   153   156   186   187                                     254   255   256   259   260
      261

Alignment Occupancy       1     1   1     1     1     1     0.5   0.5   0.5       0.5   0.5   1     1     1     1     1
      0.75 0.5
Gap in betw Columns       0     0   2     29,42 0     59    0     0     0         1     0     0     0     2     0
      0,1   0
SLIM   RegEx        IFNF.[AQ][HD]R[QR]..[HY]Y.{0,1}[LF]I
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 19.1354227204803
SLIM   I=181997 Im=6164 Id=22 Idm=1
SLIM   PSSM p-value 0.361420613528139

PSSM Listing
Pos 0 I(3.306) L(1.306) M(0.306) V(0.306) F(-0.69) C(-1.69) A(-1.69) Y(-1.69) S(-2.69) T(-2.69) P(-3.69) N(-3.69)
D(-3.69) E(-3.69) Q(-3.69) H(-3.69) R(-3.69) K(-3.69) W(-3.69) G(-4.69)
Gap (0)
Pos 1 F(5.306) Y(2.306) W(0.306) M(-0.69) I(-0.69) L(-0.69) H(-1.69) V(-1.69) C(-2.69) S(-2.69) T(-2.69) A(-2.69)
G(-3.69) N(-3.69) D(-3.69) E(-3.69) Q(-3.69) R(-3.69) K(-3.69) P(-4.69)
Gap (0)
Pos 2 N(5.306) S(0.306) D(0.306) T(-0.69) G(-0.69) E(-0.69) Q(-0.69) R(-0.69) K(-0.69) H(-1.69) P(-2.69) A(-2.69)
M(-2.69) Y(-2.69) C(-3.69) I(-3.69) L(-3.69) V(-3.69) F(-3.69) W(-4.69)
Gap (0)
Pos 3 F(5.306) Y(2.306) W(0.306) M(-0.69) I(-0.69) L(-0.69) H(-1.69) V(-1.69) C(-2.69) S(-2.69) T(-2.69) A(-2.69)
G(-3.69) N(-3.69) D(-3.69) E(-3.69) Q(-3.69) R(-3.69) K(-3.69) P(-4.69)
Gap (1)
Pos 4 Q(3.616) A(2.620) E(0.662) S(-0.07) R(-0.25) K(-0.25) T(-1.07) N(-1.07) M(-1.07) G(-1.25) D(-1.25) H(-1.25)
C(-1.33) P(-1.69) L(-2.07) Y(-2.07) I(-2.25) V(-2.69) F(-3.07) W(-3.07)
Gap (0)
Pos 5 H(7.306) D(5.313) E(1.433) Y(1.313) N(1) T(0.620) Q(0) S(-0.37) R(-0.56) K(-1) P(-1.37) G(-1.37) F(-1.56) A(-
2) M(-2.37) V(-2.37) W(-2.56) C(-3) I(-3) L(-3.37)
Gap (0)
Pos 6 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 7 Q(4.325) R(4.325) K(1.620) E(1.433) N(0) H(0) S(-0.37) T(-0.37) M(-0.37) D(-0.56) A(-1) P(-1.37) Y(-1.37) G(-
2) L(-2) V(-2.37) W(-2.37) C(-3) I(-3) F(-3)
Gap (2)
Pos 8 H(7.309) Y(6.313) F(2.325) W(1.325) N(0.355) D(0.325) Q(-0.37) T(-0.56) E(-0.56) R(-0.56) S(-1.37) K(-1.37)
M(-1.37) V(-1.37) I(-1.56) L(-1.56) A(-2) C(-2.37) P(-2.37) G(-2.37)
Gap (0)
Pos 9 Y(7) F(3) H(2) W(2) Q(-1) M(-1) I(-1) L(-1) V(-1) C(-2) S(-2) T(-2) A(-2) N(-2) E(-2) R(-2) K(-2) P(-3) G(-3)
D(-3)
Gap (0,1)
Pos 10 F(4.618) L(3.315) V(2.315) Y(1.649) M(1.372) I(1.372) W(-0.29) C(-1.52) A(-1.52) H(-2.14) S(-2.28) T(-2.28)
Q(-2.52) R(-2.52) K(-2.52) N(-3.28) E(-3.28) P(-3.52) G(-3.83) D(-3.83)
Gap (0)
Pos 11 I(3.306) L(1.306) M(0.306) V(0.306) F(-0.69) C(-1.69) A(-1.69) Y(-1.69) S(-2.69) T(-2.69) P(-3.69) N(-3.69)
D(-3.69) E(-3.69) Q(-3.69) H(-3.69) R(-3.69) K(-3.69) W(-3.69) G(-4.69)
//

===============================
 SLIM 59
===============================
ID           COesterase.clust.0.15.0
Center             2jgh_AB_0
AvSimToCtr 0.555
AvRMSDToCtr 0.914 A
Size         105
NumDistinct 8
FracDDI            0
FracPeptides       0
FracIntra    0
Species            TORPEDO CALIFORNICA (3), MUS MUSCULUS (3), RATTUS NORVEGICUS (1), HOMO SAPIENS (1)
Conservation       0.375

Members
      1j06_AB_0   1j07_AB_0   1n5r_AB_0   1n5m_AB_0   1q84_AB_0   2h9y_AB_0   2ha5_AB_0   2ha2_AB_0   2ha6_AB_0   2ha3_AB_0
      2ha0_AB_0   2ha4_AB_0   1j06_BA_0   1j07_BA_0   1n5m_BA_0   1n5r_BA_0   2h9y_BA_0   2ha5_BA_0   2ha2_BA_0   2ha6_BA_0
      2ha0_BA_0   2ha3_BA_0   2ha4_BA_0   1q84_BA_0   2c0p_AB_0   3dl7_AB_0   2c0q_AB_0   3dl4_AB_0   2jge_AB_0   2jgj_AB_0
      2jgl_AB_0   2jgg_AB_0   2gyu_AB_0   2gyw_AB_0   2jgf_AB_0   2whp_AB_0   2whq_AB_0   2whr_AB_0   2c0p_BA_0   3dl7_BA_0
      2c0q_BA_0   3dl4_BA_0   2jgh_BA_0   2gyw_BA_0   2gyu_BA_0   2jgj_BA_0   2jgl_BA_0   2jgg_BA_0   2jge_BA_0   2jgf_BA_0
      2whp_BA_0   2whq_BA_0   2whr_BA_0   2jgi_BA_0   2jgm_BA_0   2jgk_BA_0   1q83_AB_0   1q83_BA_0   2jgi_AB_0   2jgm_AB_0
      2jgk_AB_0   2gyv_AB_0   2jf0_AB_0   2jey_AB_0   2jez_AB_0   2gyv_BA_0   2jf0_BA_0   2jey_BA_0   2jez_BA_0   1maa_AB_0
      1maa_DC_0   1maa_BA_0   1maa_CD_0   3b3q_AB_0   3b3q_BA_0   3be8_AB_0   3be8_BA_0   3bix_BD_0   3bix_DB_0   1w75_AB_0
      1w75_BA_0   1w76_AB_0   1w76_BA_0   1zgc_AB_0   2va9_AB_0   2vja_AB_0   2vjc_AB_0   2vjb_AB_0   2vjd_AB_0   2vt6_AB_0
      2vt7_AB_0   1zgc_BA_0   2va9_BA_0   2vja_BA_0   2vjc_BA_0   2vjb_BA_0   2vjd_BA_0   2vt6_BA_0   2vt7_BA_0   2v96_AB_0
      2v96_BA_0   2v98_BA_0   2v97_BA_0   2v98_AB_0   2v97_AB_0

Peptides

PartnerDomains

Dist Members Intf   Alignment
      2jgh_AB_0     L     H       T       D     W       L     H       A       A     Q       R     G       A       Q     A     F   R
      F     K       L     A
      3b3q_AB_0     F     M       T             W       A     D                             E     H       A       N     N     L   E
      L     H       L
      3b3q_BA_0     F     M       T             W       A             K                     E     H       A       N     N     L   E
      L     H       L
      3be8_AB_0     F     M                     W             D       K             Q       D     H       A       T     A     F   E
      L     H       L
      3bix_BD_0     F     M       T       D     W                     K             Q       E     H       A       N     N     L   E
      L     H       L     L
      1w75_AB_0     L     Q       T       D     W       M                                                 V       Q     V     F
      F     K       L     A
        2va9_AB_0   L     Q     T     D     W     M     D                                    V     Q     V     F
        F     K     L     A
        2v98_BA_0   L     Q     T     D     W     M                                          V     Q     V     F     Q
        F     K     L     A

Dist Members ResidueID Alignment
      2jgh_AB_0   380   381   383     384   385   386   387    506   507   508   522   523   526   527   530   531
      534   535   538   539   542
      3b3q_AB_0   458   459   461           463   464   465                      616   617   620   621   624   625
      628   629   632   633
      3b3q_BA_0   458   459   461           463   464          601               616   617   620   621   624   625
      628   629   632   633
      3be8_AB_0   422   423                 427         429    565         567   580   581   584   585   588   589
      592   593   596   597
      3bix_BD_0   458   459   461     462   463                601         603   616   617   620   621   624   625
      628   629   632   633   636
      1w75_AB_0   373   374   376     377   378   379                                        518   519   522   523
      527   530   531   534
      2va9_AB_0   373   374   376     377   378   379   380                                  518   519   522   523
      527   530   531   534
      2v98_BA_0   373   374   376     377   378   379                                        518   519   522   523
      526   527   530   531   534

Alignment Occupancy       1     1     0.875 0.625 1     0.75   0.5   0.5   0.125 0.375 0.625 0.625 1     1     1     1
      0.75 1      1       1     0.625
Gap in betw Columns       0     1     0     0     0     0      118,120     14,15 0     2     0     2     0     2     0
      2     0     2

SLIM   RegEx        [EDR][HG]..[AV][QNT]..[NVA][FL]..[EQR][FL]..[HK]L..[AL]
SLIM   Coverage           0.875
SLIM   PSSM Match Cutoff 24.6098337605054
SLIM   I=181997 Im=6002 Id=29 Idm=2
SLIM   PSSM p-value 0.178564283044469

PSSM Listing
Pos 0 E(4.037) D(3.974) R(2.941) Q(1.174) K(0.687) N(-0.17) T(-0.27) S(-0.60) H(-0.60) P(-1.60) A(-1.60) G(-2.17)
M(-2.27) Y(-2.60) L(-3.27) I(-3.47) V(-3.47) F(-3.47) W(-3.60) C(-3.94)
Gap (0)
Pos 1 H(7.306) G(3.921) Y(1.308) D(0.340) N(0.319) T(-0.17) E(-0.65) Q(-0.65) R(-0.65) S(-1.17) K(-1.60) A(-1.64)
V(-1.64) F(-1.65) P(-2.47) W(-2.47) M(-2.60) C(-3.47) I(-3.60) L(-3.60)
Gap (2)
Pos 2 A(3.540) V(3.023) I(2.049) S(0.559) M(0.222) L(0.222) C(-0.27) G(-0.44) T(-1.27) P(-1.27) E(-1.27) Q(-1.27)
K(-1.27) N(-1.39) R(-1.39) F(-1.50) Y(-1.50) D(-2.27) H(-2.27) W(-3)
Gap (0)
Pos 3 N(5.023) Q(4.313) T(2.041) E(1.433) S(0.620) D(0.620) K(0.620) R(0.576) G(-0.24) H(-0.27) M(-0.51) P(-0.55)
A(-1.27) Y(-1.37) L(-2.27) V(-2.27) C(-2.41) W(-2.51) I(-2.80) F(-2.80)
Gap (2)
Pos 4 N(5.019) V(3.021) A(2.644) I(2.033) S(0.559) M(0.150) L(0.122) D(0.069) G(-0.44) T(-0.65) E(-0.65) Q(-0.65)
K(-0.65) R(-0.72) C(-0.89) Y(-1.50) P(-1.64) F(-1.65) H(-1.65) W(-3.27)
Gap (0)
Pos 5 F(5.531) L(3.049) Y(2.540) V(2.049) M(1.222) I(1.222) W(0.559) H(-1.39) C(-1.50) A(-1.50) S(-2) T(-2) Q(-2.50)
R(-2.50) K(-2.50) N(-3) E(-3) G(-3.27) D(-3.27) P(-3.50)
Gap (2)
Pos 6 E(4.320) Q(3.117) R(2.964) D(1.344) K(0.964) N(-0.28) H(-0.28) S(-0.39) T(-0.39) A(-1.28) P(-1.39) M(-1.43)
Y(-2.03) G(-2.28) L(-2.83) V(-3.03) W(-3.03) I(-3.28) F(-3.28) C(-3.83)
Gap (0)
Pos 7 F(5.309) L(3.325) V(2.325) Y(2.325) M(1.433) I(1.433) W(0.355) C(-1.37) A(-1.37) H(-1.56) S(-2) T(-2) Q(-2.37)
R(-2.37) K(-2.37) N(-3) E(-3) P(-3.37) G(-3.37) D(-3.37)
Gap (2)
Pos 8 H(7.306) K(4.309) R(1.433) Y(1.325) N(0.620) E(0.620) Q(0.620) D(0.433) T(0) S(-0.37) P(-1.37) A(-1.37) M(-
1.37) F(-1.56) G(-2) L(-2.37) V(-2.37) W(-2.37) C(-3) I(-3)
Gap (0)
Pos 9 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (2)
Pos 10 A(3.308) L(1.947) V(0.947) S(0.319) M(0.102) I(0.102) C(-0.60) G(-0.68) T(-1.60) Q(-1.60) R(-1.60) K(-1.60)
F(-1.64) P(-1.65) N(-1.65) E(-1.65) Y(-2.17) H(-2.60) D(-2.65) W(-3.17)
//

===============================
 SLIM 60
===============================
ID           CPSase_L_chain.clust.0.3.1
Center             2w6m_BA_0
AvSimToCtr 0.715
AvRMSDToCtr 0.422 A
Size         25
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            PSEUDOMONAS AERUGINOSA (1), STAPHYLOCOCCUS AUREUS (1), ESCHERICHIA COLI (1), RHIZOBIUM ETLI CFN
42 (1)
Conservation       0.25

Members
      1dv1_AB_0 1dv1_BA_0 2vr1_AB_0 3g8c_AB_0 2v58_AB_0 2w6m_AB_0 2w6n_AB_0 2w70_AB_0 2w6q_AB_0 2v58_BA_0
      2w6z_BA_0 2w6n_BA_0 2w70_BA_0 2w6q_BA_0 2v5a_BA_0 2c00_AB_0 2c00_BA_0 2w71_CA_0 3g8c_BA_0 3g8d_BA_0
      3g8d_AB_0 2vpq_AB_0 2vpq_BA_0 2qf7_AB_0 2qf7_BA_0
Peptides

PartnerDomains
      Biotin_carb_C (2w6m_BA_0,2c00_AB_0,2vpq_AB_0,2qf7_AB_0)

Dist Members Intf   Alignment
      2w6m_BA_0     H     A     P      G      G     F     V     A      R     N     Q     E
      2c00_AB_0     H           P      G      G     N     E     A      R     N     D     E
      2vpq_AB_0     L     A     P      G      G     Y           M      A     R     S     E
      2qf7_AB_0     R     S     A      S      G     F     E     S      R     R           E

Dist Members ResidueID Alignment
      2w6m_BA_0   358   359   360      361    362   363   397   400    401   404   407   408
      2c00_AB_0   358         360      361    362   363   397   400    401   404   407   408
      2vpq_AB_0   359   360   361      362    363   364         401    402   405   408   409
      2qf7_AB_0   374   375   376      377    378   379   414   417    418   421         425

Alignment Occupancy       1     0.75   1      1     1     1     0.75   1     1     1     0.75   1
Gap in betw Columns       0     0      0      0     0     33,34 2      0     2     2     0

SLIM   RegEx        [HRL][AS][PA][GS]G[FNY]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 21.345191621869
SLIM   I=181997 Im=7791 Id=106 Idm=6
SLIM   PSSM p-value 0.132166003125994

PSSM Listing
Pos 0 H(7.307) R(3.627) L(2.617) V(1.629) Y(1.340) K(0.725) M(0.696) I(0.633) N(0.483) D(0.334) Q(0.193) E(-0.27)
T(-0.46) F(-0.80) S(-1.17) A(-1.37) C(-2.04) P(-2.17) W(-2.17) G(-2.24)
Gap (0)
Pos 1 A(3.331) S(2.708) T(-0.14) N(-0.14) G(-0.28) C(-0.52) E(-0.83) Q(-0.83) K(-0.83) D(-1.14) P(-1.28) R(-1.28)
M(-1.28) I(-1.52) L(-1.52) H(-1.83) V(-2.28) F(-2.28) Y(-2.28) W(-3.28)
Gap (0)
Pos 2 P(6.712) A(2.633) T(0.756) S(-0.04) N(-1) E(-1) Q(-1) K(-1) G(-1.04) D(-1.17) C(-1.24) R(-1.64) M(-1.64) H(-2)
V(-2) I(-2.04) L(-2.04) Y(-2.64) F(-3.04) W(-3.64)
Gap (0)
Pos 3 G(5.713) S(2.667) T(1) A(0.357) V(-0.24) N(-0.24) D(-0.64) E(-1.04) Q(-1.04) K(-1.04) P(-1.64) H(-1.64) R(-
1.64) C(-2.04) M(-2.04) W(-2.17) F(-2.64) Y(-2.64) I(-3.04) L(-3.04)
Gap (0)
Pos 4 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 5 Y(5.649) F(5.331) N(4.614) W(1.166) H(0.752) S(-0.24) D(-0.33) M(-0.46) I(-0.50) L(-0.50) Q(-1.00) T(-1.04)
E(-1.17) R(-1.17) K(-1.17) V(-1.24) G(-1.24) A(-2) C(-2.17) P(-2.89)
//

===============================
 SLIM 61
===============================
ID           CTP_transf_2.clust.0.2.0
Center             1kqn_DC_0
AvSimToCtr 0.398
AvRMSDToCtr 1.275 A
Size         41
NumDistinct 11
FracDDI            0.181818181818182
FracPeptides       0
FracIntra    0
Species            BACILLUS ANTHRACIS (4), BACILLUS SUBTILIS (3), STAPHYLOCOCCUS AUREUS (2), PSEUDOMONAS AERUGINOSA
(1), HOMO SAPIENS (1)
Conservation       0.363636363636364

Members
      1kam_AB_0   1kam_CD_0   1kam_BA_0   1kam_DC_0   2qtr_BC_0   2qtr_CB_0   3e27_AB_0   3e27_BA_0   3e27_DC_0   3e27_CD_0
      3dv2_AB_0   3dv2_CD_0   3dv2_BA_0   3dv2_DC_0   2qtm_AB_0   2qtn_AB_0   2qtm_BA_0   2qtn_BA_0   2h29_AB_0   2h29_BA_0
      2h2a_AB_0   2h2a_BA_0   1kqn_AB_0   1kqn_CD_0   1kqo_AB_0   1kr2_AB_0   1kqo_CD_0   1kqn_FE_0   1kqo_FE_0   1kr2_FE_0
      1kr2_CD_0   1kqn_BA_0   1kqo_BA_0   1kr2_BA_0   1kqo_DC_0   1kr2_DC_0   1kqn_EF_0   1kqo_EF_0   1kr2_EF_0   1yum_BD_0
      1yum_DB_0

Peptides

PartnerDomains
      CTP_transf_2 (2h29_AB_0,2h29_BA_0)

Dist Members Intf Alignment
      1kqn_DC_0   N     R         W       I     A       N     D       I       K     I       A     G       Q       S     I     R   Y
      L     D
      1kam_AB_0                           P     E       F     E               M             R     K       K       P           D   Y
      L
      1kam_BA_0         R                 P     E       F     E               M             R                     P           D   Y
      L
      1kam_DC_0         R                 P     E       F     E               M                   K       K       P           D   Y
      L
      2qtr_BC_0                           P     E       F     A       V       L                                   T           K   Y
      L
      3e27_AB_0                           P     E       F     A       V       L             R                     T           K   Y
      L
      3dv2_AB_0         R                 P     E       F     A               L                           K       T           K   Y
      L
        3dv2_CD_0                     P     E     F     A     V     L           R           K     T           K     Y
        L
        2h29_AB_0   T                 P     R     V     D     I     M           R                 S           Q     V
        L     K
        2h29_BA_0   T                 P     R     V     D     I     M           R           K     S           Q     V
        L     K
        1yum_BD_0   I                             L     A     V                 L     G     R     S     V     R     F
        L

Dist Members ResidueID Alignment
      1kqn_DC_0   22    188   216     217   218   219   220   221   225   226   229   233   234   235   236   237
      238   239   242
      1kam_AB_0                       150   151   152   153         158         162   166   167   168         170
      171   172
      1kam_BA_0         133           150   151   152   153         158         162               168         170
      171   172
      1kam_DC_0         133           150   151   152   153         158               166   167   168         170
      171   172
      2qtr_BC_0                       150   151   152   153   154   158                           168         170
      171   172
      3e27_AB_0                       150   151   152   153   154   158         162               168         170
      171   172
      3dv2_AB_0         133           150   151   152   153         158                     167   168         170
      171   172
      3dv2_CD_0                       150   151   152   153   154   158         162         167   168         170
      171   172
      2h29_AB_0   16                  150   151   152   153   154   158         162               168         170
      171   172   175
      2h29_BA_0   16                  150   151   152   153   154   158         162         167   168         170
      171   172   175
      1yum_BD_0   17                              175   176   177               185   189   190   191   192   193
      194   195

Alignment Occupancy     0.363 0.363 0.090 0.909 0.909 1       1     0.636 0.909 0.090 0.727 0.363 0.636 1     0.181 1
      1     1     0.272
Gap in betw Columns     0     0     0     0     3     3       4     0     1     0     0

SLIM   RegEx        [PI][ERA][FVNL][ADE][VI].{3}[MLK].{3}[RAL].{4}[KQR][STP].[KDQR][YVF]L
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 25.8850198013469
SLIM   I=181997 Im=5228 Id=43 Idm=3
SLIM   PSSM p-value 0.09116511233511

PSSM Listing
Pos 0 P(6.799) I(1.610) T(0.804) L(-0.33) M(-1.02) V(-1.02) A(-1.09) S(-1.16) N(-1.18) D(-1.18) E(-1.18) Q(-1.18)
K(-1.18) H(-2.16) R(-2.16) G(-2.18) F(-2.24) C(-2.60) Y(-2.60) W(-3.93)
Gap (0)
Pos 1 E(4.550) R(3.319) A(1.660) Q(1.654) D(1.555) K(1.133) S(-0.05) N(-0.16) H(-0.18) T(-0.30) P(-1.23) G(-1.60)
M(-1.67) Y(-2.09) C(-2.19) L(-2.41) I(-2.60) V(-2.93) F(-2.93) W(-3.09)
Gap (0)
Pos 2 F(5.548) N(3.603) Y(2.556) V(2.484) L(1.808) I(1.602) M(0.595) W(0.561) S(-0.99) A(-1.15) D(-1.23) H(-1.26)
T(-1.54) C(-1.65) Q(-1.83) K(-1.83) E(-1.88) R(-1.93) G(-2.01) P(-2.93)
Gap (0)
Pos 3 D(4.719) E(3.753) A(3.217) Q(0.898) S(0.577) T(0.166) N(0.166) K(0.008) G(-0.52) R(-0.74) C(-0.74) H(-0.83)
P(-1) M(-1.52) I(-1.63) L(-1.68) Y(-2.18) V(-2.42) F(-2.42) W(-3.18)
Gap (0)
Pos 4 I(3.099) V(3.025) L(1.099) M(0.548) A(-0.76) F(-0.90) C(-1.45) Y(-1.45) S(-2.45) T(-2.45) P(-2.76) E(-2.76)
Q(-2.76) K(-2.76) N(-3.45) D(-3.45) H(-3.45) R(-3.45) W(-3.45) G(-3.76)
Gap (3)
Pos 5 M(4.251) L(3.145) K(2.618) V(1.997) I(1.367) R(-0.11) F(-0.19) Q(-0.28) A(-1.09) E(-1.11) Y(-1.16) S(-1.17)
T(-1.17) C(-1.18) W(-1.50) N(-1.76) P(-2.17) H(-2.17) D(-2.76) G(-3.17)
Gap (3)
Pos 6 R(4.394) A(1.648) L(1.623) K(1.405) V(0.623) Q(0.424) M(-0.09) I(-0.31) N(-0.53) E(-0.53) H(-0.57) S(-0.77)
T(-1.40) G(-1.79) C(-1.88) F(-2.03) Y(-2.12) P(-2.19) D(-2.43) W(-3.12)
Gap (4)
Pos 7 K(4.225) R(2.838) Q(2.706) E(0.692) N(-0.45) S(-0.54) T(-0.54) H(-1.05) M(-1.23) D(-1.30) A(-1.45) P(-1.54)
Y(-2.23) G(-2.45) L(-2.45) V(-3.23) W(-3.23) C(-3.45) I(-3.45) F(-3.45)
Gap (0)
Pos 8 P(5.704) T(3.071) S(3.041) N(0.373) D(0.373) G(0.328) A(0.200) E(-0.18) Q(-0.18) K(-0.18) H(-0.62) R(-1.18)
M(-1.18) C(-1.26) V(-2) I(-2.18) L(-2.18) Y(-2.18) F(-2.26) W(-3.18)
Gap (1)
Pos 9 D(4.703) K(4.023) R(3.407) Q(3.358) E(1.510) N(0.384) T(0.302) S(-0.12) H(-0.51) M(-0.92) P(-1.12) A(-1.18)
G(-1.61) Y(-1.86) L(-2.26) V(-2.72) W(-2.86) C(-3) I(-3) F(-3)
Gap (0)
Pos 10 Y(6.683) F(3.938) V(2.325) W(1.728) H(1.689) I(1.388) M(-0.15) L(-0.15) Q(-1.21) A(-1.22) C(-1.72) S(-2) T(-
2) E(-2.05) K(-2.05) N(-2.18) R(-2.18) P(-2.77) G(-3) D(-3)
Gap (0)
Pos 11 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
//

===============================
 SLIM 62
===============================
ID          CTP_transf_2.clust.0.2.5
Center            1coz_BA_0
AvSimToCtr 0.551
AvRMSDToCtr 0.674 A
Size        11
NumDistinct 5
FracDDI             0.2
FracPeptides        0
FracIntra    0
Species             STAPHYLOCOCCUS AUREUS (3), BACILLUS SUBTILIS (1), THERMOPLASMA VOLCANIUM GSS1 (1)
Conservation        0.6

Members
      1coz_AB_0 1n1d_AB_0 1n1d_BA_0 1n1d_DC_0 1n1d_CD_0 2b7l_AB_0 2b7l_CD_0 2b7l_BA_0 2b7l_DC_0 3glv_AB_0
      3glv_BA_0

Peptides

PartnerDomains
      CTP_transf_2 (1coz_BA_0)

Dist Members Intf   Alignment
      1coz_BA_0     L     L      H     W      I      Y    H      H      L      I      E      T      I      R      Y      V      D
      I     K       I     E      I
      2b7l_AB_0     L     L                   I           Y      Q      M      M      E      S      I      R      Y      V      D
      2b7l_BA_0     L     L      H            I           Y      Q      M      M      E      S      I      R      Y      V
      2b7l_DC_0     L     L      H     Y      I           Y      Q      M      M      E      S      I      R      Y      V      D
      3glv_AB_0     I     L      H     L      I           F      S      A      L      S      E      L      K      V      V      D

Dist Members ResidueID Alignment
      1coz_BA_0   12    13    14       15     18     49   50     54     57     58     60     61     62     63     64     65
      66    117   121   122   125      126
      2b7l_AB_0   512   513                   518         550    554    557    558    560    561    562    563    564    565
      566
      2b7l_BA_0   12    13    14              18          50     54     57     58     60     61     62     63     64     65
      2b7l_DC_0   1012 1013 1014       1015   1018        1050   1054   1057   1058   1060   1061   1062   1063   1064   1065
      1066
      3glv_AB_0   12    13    14       15     18          50     54     57     58     60     61     62     63     64     65
      66

Alignment Occupancy       1      1     0.8    0.6    1    0.2    1      1      1      1      1      1      1      1      1      1
      0.8   0.2   0.2     0.2    0.2   0.2
Gap in betw Columns       0      0     0      2      31   3      2      0      1      0      0      0      0      0      0

SLIM   RegEx        [YFH].{3}[QSH]..[MAL][MIL].[ES][STE][IL][RK][YV]VD
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 23.7241885799041
SLIM   I=181997 Im=6505 Id=43 Idm=0
SLIM   PSSM p-value 1
PSSM Listing
Pos 0 Y(6.497) H(6.398) F(4.530) W(1.610) N(-0.45) D(-0.53) M(-0.80) Q(-0.84) I(-0.84) L(-0.84) V(-1.13) T(-1.17)
E(-1.23) R(-1.23) S(-1.70) K(-1.80) A(-2) C(-2.13) G(-2.70) P(-2.80)
Gap (3)
Pos 1 H(6.391) Q(4.493) S(2.450) E(1.575) R(0.644) K(0.644) Y(0.545) N(0.523) T(0.295) D(0.295) A(-0.23) M(-0.35)
P(-1.13) G(-1.17) V(-2) F(-2.03) L(-2.13) W(-2.13) C(-2.17) I(-2.70)
Gap (2)
Pos 2 M(4.506) L(2.736) A(2.417) V(1.417) I(1.157) F(-0.18) S(-0.23) Q(-0.35) C(-0.70) T(-1.13) R(-1.13) K(-1.13)
Y(-1.13) W(-1.35) G(-1.45) P(-1.80) N(-1.80) E(-1.80) H(-2.13) D(-2.80)
Gap (0)
Pos 3 M(4.511) L(2.823) I(2.641) V(1.535) F(0) Q(-0.45) C(-1) A(-1) Y(-1) S(-1.29) T(-1.29) R(-1.35) K(-1.35) W(-
1.35) P(-2.29) N(-2.29) E(-2.29) H(-2.29) D(-3.13) G(-3.29)
Gap (1)
Pos 4 E(4.778) S(2.461) D(1.810) Q(1.810) K(0.864) T(0.295) N(0.295) H(-0.13) R(-0.13) A(-0.17) P(-1) G(-1.17) M(-
1.70) Y(-2) C(-2.42) I(-2.70) L(-2.70) V(-2.70) F(-2.70) W(-3)
Gap (0)
Pos 5 S(3.511) E(3.417) T(2.545) D(0.963) Q(0.823) N(0.708) A(0.575) K(0.295) G(0.157) P(-0.17) H(-0.47) R(-0.70)
M(-1.13) C(-1.21) Y(-2) I(-2.13) L(-2.13) V(-2.13) F(-2.13) W(-3)
Gap (0)
Pos 6 I(3.810) L(2.823) V(1.823) M(1.295) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2.70) R(-2.70) K(-2.70) W(-2.70)
P(-3) N(-3) E(-3) H(-3) D(-3.13) G(-4)
Gap (0)
Pos 7 R(4.789) K(3.572) Q(1) E(0.295) N(0) H(-0.13) S(-0.70) T(-0.70) A(-1) M(-1) P(-1.70) D(-1.70) G(-2) L(-2) Y(-
2) C(-3) I(-3) V(-3) F(-3) W(-3)
Gap (0)
Pos 8 Y(6.776) F(2.781) V(2.417) H(1.778) W(1.778) I(1.461) M(-0.17) L(-0.17) Q(-1.13) A(-1.17) C(-1.70) S(-2) T(-2)
E(-2) K(-2) N(-2.13) R(-2.13) P(-2.70) G(-3) D(-3)
Gap (0)
Pos 9 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (0)
Pos 10 D(5.776) E(1.776) T(0.776) N(0.776) S(-0.22) Q(-0.22) P(-1.22) G(-1.22) H(-1.22) K(-1.22) A(-2.22) R(-2.22)
C(-3.22) M(-3.22) I(-3.22) V(-3.22) F(-3.22) Y(-3.22) L(-4.22) W(-4.22)
//

===============================
 SLIM 63
===============================
ID          CUB.clust.0.2.0
Center            1nt0_AG_0
AvSimToCtr 0.530
AvRMSDToCtr 0.670 A
Size        7
NumDistinct 6
FracDDI           1
FracPeptides        0
FracIntra    0
Species             HOMO SAPIENS (5), RATTUS NORVEGICUS (1)
Conservation        0.833333333333333

Members
      1nt0_GA_0 1szb_AB_0 1szb_BA_0 1nzi_AB_0 1nzi_BA_0 3dem_AB_0 3dem_BA_0

Peptides

PartnerDomains
      EGF_CA (1nt0_AG_0,1szb_AB_0,3dem_AB_0,3dem_BA_0)
      CUB (1nzi_AB_0,3dem_AB_0,3dem_BA_0)
      EGF (1nzi_AB_0,1nzi_BA_0)

Dist Members Intf   Alignment
      1nt0_AG_0     Y     C     H     Y     L     Y      S     C     V
      1szb_AB_0     H     C     H     H     L     Y      S     C     A
      1nzi_AB_0     F     C     N     F     I     F      S     C
      1nzi_BA_0     F           N     F     I     F      S     C     P
      3dem_AB_0     Y           H     Y     I     Y      S     C
      3dem_BA_0     Y     C     H     Y     I     Y      S     C

Dist Members ResidueID Alignment
      1nt0_AG_0   136   137   138     140   141   145    147   148   150
      1szb_AB_0   140   141   142     144   145   149    151   152   154
      1nzi_AB_0   131   132   133     135   136   140    142   143
      1nzi_BA_0   131         133     135   136   140    142   143   145
      3dem_AB_0   137         139     141   142   146    148   149
      3dem_BA_0   137   138   139     141   142   146    148   149

Alignment Occupancy       1     0.666 1     1     1      1     1     1     0.5
Gap in betw Columns       0     0     1     0     3      1     0     1

SLIM   RegEx        [YFH]C[HN].[YFH][IL].{3}[YF].SC.[APV]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 21.3555204507755
SLIM   I=181997 Im=8845 Id=56 Idm=2
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Y(6.321) H(6.215) F(4.973) W(1.531) M(-0.61) N(-0.62) I(-0.64) L(-0.64) D(-0.70) Q(-1.00) V(-1.11) T(-1.27)
E(-1.38) R(-1.38) S(-1.74) K(-1.92) A(-2) C(-2.11) G(-2.74) P(-2.92)
Gap (0)
Pos 1 C(8.594) A(-0.40) S(-1.40) T(-1.40) M(-1.40) I(-1.40) L(-1.40) V(-1.40) F(-2.40) Y(-2.40) W(-2.40) P(-3.40)
G(-3.40) N(-3.40) D(-3.40) Q(-3.40) H(-3.40) R(-3.40) K(-3.40) E(-4.40)
Gap (0)
Pos 2 H(7.594) N(4.914) Y(1.603) D(1) S(0.140) T(0) E(0) Q(0) R(0) K(-0.54) G(-0.85) F(-1.33) P(-2) A(-2) M(-2) V(-
2.23) W(-2.33) C(-3) I(-3) L(-3)
Gap (1)
Pos 3 Y(6.321) H(6.215) F(4.973) W(1.531) M(-0.61) N(-0.62) I(-0.64) L(-0.64) D(-0.70) Q(-1.00) V(-1.11) T(-1.27)
E(-1.38) R(-1.38) S(-1.74) K(-1.92) A(-2) C(-2.11) G(-2.74) P(-2.92)
Gap (0)
Pos 4 I(3.660) L(3.140) V(2.140) M(1.452) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2.54) R(-2.54) K(-2.54) W(-2.54)
P(-3) N(-3) E(-3) H(-3) D(-3.23) G(-4)
Gap (3)
Pos 5 Y(6.603) F(4.996) W(1.763) H(1.619) M(-0.54) I(-0.54) L(-0.54) V(-1) Q(-1.33) C(-2) S(-2) T(-2) A(-2) N(-2.23)
E(-2.23) R(-2.23) K(-2.23) G(-3) D(-3) P(-3.23)
Gap (1)
Pos 6 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 7 C(9) A(0) S(-1) T(-1) M(-1) I(-1) L(-1) V(-1) F(-2) Y(-2) W(-2) P(-3) G(-3) N(-3) D(-3) Q(-3) H(-3) R(-3) K(-
3) E(-4)
Gap (1)
Pos 8 P(5.208) A(2.232) V(2.213) I(1.228) S(-0.62) T(-0.62) M(-0.62) L(-0.64) C(-1.44) G(-1.62) E(-1.92) Q(-1.92)
K(-1.92) N(-2.03) D(-2.38) R(-2.38) Y(-2.38) F(-2.44) H(-2.92) W(-3.92)
//

===============================
 SLIM 64
===============================
ID           CaMKII_AD.clust.0.2.0
Center             2w2c_HF_0
AvSimToCtr 0.609
AvRMSDToCtr 0.633 A
Size         40
NumDistinct 5
FracDDI            1
FracPeptides       0
FracIntra    0
Species            CAENORHABDITIS ELEGANS (3), HOMO SAPIENS (1), MUS MUSCULUS (1)
Conservation       0.6

Members
      1hkx_AM_0   1hkx_HJ_0   1hkx_IG_0   1hkx_FH_0   1hkx_LN_0   1hkx_GE_0   1hkx_MK_0   1hkx_NB_0   1hkx_BD_0   1hkx_EC_0
      1hkx_CA_0   1hkx_DF_0   1hkx_JL_0   1hkx_KI_0   2ux0_AB_0   2ux0_CD_0   2ux0_EF_0   2ux0_BC_0   2ux0_FA_0   2ux0_DE_0
      2w2c_AB_0   2w2c_DG_0   2w2c_BD_0   2w2c_EN_0   2w2c_MC_0   2w2c_CL_0   2w2c_GI_0   2w2c_LK_0   2w2c_IH_0   2w2c_FA_0
      2w2c_KJ_0   2w2c_NM_0   2w2c_JE_0   2f86_BN_0   2f86_DB_0   2f86_LJ_0   2f86_FD_0   2f86_NL_0   2f86_HF_0   2f86_JH_0
Peptides

PartnerDomains
      CaMKII_AD (2w2c_HF_0,1hkx_HJ_0,2f86_BN_0,2f86_DB_0,2f86_LJ_0)

Dist Members Intf   Alignment
      2w2c_HF_0     E     A     L     N       L     V     D     F     F     Y     N     A
      1hkx_HJ_0     E     A     L     N       L     V     D     F     F     Y     N     L
      2f86_BN_0     E     A     L     N             I           F     F     Y
      2f86_DB_0     E     A     L     N       L     I           F     F     Y
      2f86_LJ_0     E     A     L     N       L     I     E     F     F     Y

Dist Members ResidueID Alignment
      2w2c_HF_0   383   384   385     387     388   389   393   394   397   398   401   402
      1hkx_HJ_0   383   384   385     387     388   389   393   394   397   398   401   402
      2f86_BN_0   386   387   388     390           392         397   400   401
      2f86_DB_0   386   387   388     390     391   392         397   400   401
      2f86_LJ_0   386   387   388     390     391   392   396   397   400   401

Alignment Occupancy       1     1     1       1     0.8   1     0.6   1     1     1     0.4   0.4
Gap in betw Columns       0     0     1       0     0     3     0     2     0

SLIM   RegEx        EAL.NL[IV].{3}[DE]F..FY
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 20.4180742643257
SLIM   I=181997 Im=6289 Id=20 Idm=1
SLIM   PSSM p-value 0.354321017179072

PSSM Listing
Pos 0 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3) L(-3) V(-3) F(-3) W(-3) C(-4)
Gap (0)
Pos 1 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (0)
Pos 2 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (1)
Pos 3 N(6) S(1) D(1) T(0) G(0) E(0) Q(0) R(0) K(0) H(-1) P(-2) A(-2) M(-2) Y(-2) C(-3) I(-3) L(-3) V(-3) F(-3) W(-4)
Gap (0)
Pos 4 L(3.776) V(2.776) M(1.776) I(1.776) F(-0.22) C(-1.22) A(-1.22) Y(-1.22) S(-2.22) T(-2.22) Q(-2.22) R(-2.22)
K(-2.22) W(-2.22) P(-3.22) N(-3.22) E(-3.22) H(-3.22) G(-4.22) D(-4.22)
Gap (0)
Pos 5 I(3.708) V(3.155) L(1.708) M(1) F(-0.29) A(-0.47) C(-1) Y(-1) S(-2) T(-2) P(-2.47) E(-2.47) Q(-2.47) K(-2.47)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.47)
Gap (3)
Pos 6 D(5.092) E(3.485) Q(0.630) T(0.252) N(0.252) K(-0.36) S(-0.51) H(-1.05) R(-1.36) P(-1.51) G(-1.74) A(-2.05)
M(-3.05) Y(-3.05) I(-3.51) V(-3.51) F(-3.51) C(-3.74) L(-4.05) W(-4.05)
Gap (0)
Pos 7 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (2)
Pos 8 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 9 Y(7) F(3) H(2) W(2) Q(-1) M(-1) I(-1) L(-1) V(-1) C(-2) S(-2) T(-2) A(-2) N(-2) E(-2) R(-2) K(-2) P(-3) G(-3)
D(-3)
//

===============================
 SLIM 65
===============================
ID           Cadherin.clust.0.2.0
Center             1zvn_AB_0
AvSimToCtr 0.478
AvRMSDToCtr 1.010 A
Size         7
NumDistinct 7
FracDDI            0
FracPeptides       0
FracIntra    0
Species            MUS MUSCULUS (6), GALLUS GALLUS (1)
Conservation       0.857142857142857

Members
      1nci_AB_0 1nci_BA_0 1zvn_BA_0 1zxk_AB_0 1zxk_BA_0 2a4c_AB_0 2a4c_BA_0

Peptides

PartnerDomains

Dist Members Intf   Alignment
      1zvn_AB_0     S     G     W   V     W     Q        F   F    L     Y     L     Y     V     G     K     H     K
      Q
      1nci_AB_0     S     D     W   V     I
      1nci_BA_0     S     D     W   V                                                                       R
      1zxk_AB_0                 W   V     W     Q            F    L     F           L     V     G     R     H     K
      1zxk_BA_0           S     W   V     W     Q            F    L     F     I     L     V     G     R     H     K
      2a4c_AB_0     S     G     W   V     W     Q                       Y     V     L     V     G     R           K
      Q
        2a4c_BA_0   S     G     W     V     W     Q          F      I     Y     V     L     V     G     R             K
        Q

Dist Members ResidueID Alignment
      1zvn_AB_0   0     1     2       3     4     6    7     8      10    13    19    20    21    22    23    25
      95    97
      1nci_AB_0   -1    1     2       3     4
      1nci_BA_0   -1    1     2       3                                                                       23
      1zxk_AB_0               2       3     4     6          8      10    13          20    21    22    23    25
      95
      1zxk_BA_0         1     2       3     4     6          8      10    13    19    20    21    22    23    25
      95
      2a4c_AB_0   0     1     2       3     4     6                       13    19    20    21    22    23
      95    97
      2a4c_BA_0   0     1     2       3     4     6          8      10    13    19    20    21    22    23
      95    97

Alignment Occupancy     0.714 0.857 1       1     0.857 0.714 0.142 0.571 0.571 0.714 0.571 0.714 0.714 0.714 0.714
      0.571 0.714 0.428
Gap in betw Columns     0     0     0       0     1    1     1      2     5     0     0     0     0     1     65,69

SLIM   RegEx        S[GDS]WV[WI].Q.F.[LI]..[YF]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 19.8417220721683
SLIM   I=181997 Im=3606 Id=21 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 S(3.663) T(0.663) A(0.663) N(0.663) G(-0.33) D(-0.33) E(-0.33) Q(-0.33) K(-0.33) C(-1.33) P(-1.33) H(-1.33)
R(-1.33) M(-1.33) I(-2.33) L(-2.33) V(-2.33) F(-2.33) Y(-2.33) W(-3.33)
Gap (0)
Pos 1 G(5.154) D(4.749) S(2.141) T(0.845) E(0.838) N(0.201) A(-0.15) Q(-0.72) V(-0.77) K(-1.18) P(-1.53) H(-1.53)
R(-1.90) C(-2.42) M(-2.42) W(-2.65) F(-2.90) Y(-2.90) I(-3.18) L(-3.42)
Gap (0)
Pos 2 W(11) Y(2) F(1) M(-1) C(-2) G(-2) Q(-2) H(-2) L(-2) S(-3) T(-3) A(-3) E(-3) R(-3) K(-3) I(-3) V(-3) P(-4) N(-
4) D(-4)
Gap (0)
Pos 3 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (0)
Pos 4 W(10.66) I(2.058) Y(1.673) F(0.734) L(0.141) M(-0.42) V(-0.85) C(-1.90) Q(-2.26) H(-2.26) G(-2.30) A(-2.42)
S(-2.90) T(-2.90) E(-3.15) R(-3.15) K(-3.15) P(-3.90) N(-3.90) D(-3.90)
Gap (1)
Pos 5 Q(4.663) E(1.663) R(0.663) K(0.663) S(-0.33) T(-0.33) N(-0.33) D(-0.33) H(-0.33) M(-0.33) P(-1.33) A(-1.33)
Y(-1.33) G(-2.33) L(-2.33) V(-2.33) W(-2.33) C(-3.33) I(-3.33) F(-3.33)
Gap (1)
Pos 6 F(5.440) Y(2.440) W(0.440) M(-0.55) I(-0.55) L(-0.55) H(-1.55) V(-1.55) C(-2.55) S(-2.55) T(-2.55) A(-2.55)
G(-3.55) N(-3.55) D(-3.55) E(-3.55) Q(-3.55) R(-3.55) K(-3.55) P(-4.55)
Gap (1)
Pos 7 L(3.196) I(2.394) V(2.196) M(1.268) F(-0.55) C(-1.55) A(-1.55) Y(-1.55) S(-2.55) T(-2.55) Q(-2.73) R(-2.73)
K(-2.73) W(-2.73) P(-3.55) N(-3.55) E(-3.55) H(-3.55) D(-4.20) G(-4.55)
Gap (2)
Pos 8 Y(6.164) F(4.819) W(1.372) H(1.185) M(-0.81) I(-0.81) L(-0.81) V(-1.33) Q(-1.76) C(-2.33) S(-2.33) T(-2.33)
A(-2.33) N(-2.62) E(-2.62) R(-2.62) K(-2.62) G(-3.33) D(-3.33) P(-3.62)
//

===============================
 SLIM 66
===============================
ID           Catalase-rel.clust.0.25.1
Center             1p81_CD_1
AvSimToCtr 0.563
AvRMSDToCtr 1.011 A
Size         131
NumDistinct 17
FracDDI            0
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (5), BOS TAURUS (2), VIBRIO SALMONICIDA LFI1238 (2), SACCHAROMYCES CEREVISIAE (2),
NEUROSPORA CRASSA (2), ENTEROCOCCUS FAECALIS V583 (2), PSEUDOMONAS SYRINGAE (1), ESCHERICHIA COLI (1)
Conservation       0.294117647058824

Members
      1a4e_AC_1   1a4e_CA_1   1a4e_DB_1   1a4e_BD_1   1cf9_AB_1   1qws_AB_1   1p81_AB_1   1cf9_BA_1   1p81_BA_1   1qws_BA_1
      1cf9_DC_1   1p80_AB_1   1p80_BA_1   1cf9_CD_1   1qws_CD_1   1gg9_AB_1   1gge_AB_1   1ggj_AB_1   1ggh_AB_1   1p7y_AB_1
      1p7z_AB_1   1gg9_BA_1   1gge_BA_1   1ggj_BA_1   1ggh_BA_1   1p7y_BA_1   1p7z_BA_1   1gg9_CD_1   1gge_CD_1   1ggh_CD_1
      1ggj_CD_1   1p7y_CD_1   1p7z_CD_1   1gg9_DC_1   1gge_DC_1   1ggj_DC_1   1ggh_DC_1   1p7y_DC_1   1p7z_DC_1   1p80_CD_1
      1p80_DC_1   1qf7_CD_1   1p81_DC_1   1qws_DC_1   1qf7_DC_1   1qf7_BA_1   1qf7_AB_1   1ggf_AB_1   1ggf_BA_1   1ggf_CD_1
      1ggf_DC_1   1ye9_EF_0   1ye9_NM_0   1ye9_GH_0   1ye9_PO_0   1ye9_FE_0   1ye9_MN_0   1ye9_HG_0   1ye9_OP_0   1ggk_AB_1
      1ggk_BA_1   1ggk_DC_1   1ggk_CD_1   1iph_AD_1   1iph_BC_1   1iph_CB_1   1iph_DA_1   3ej6_AB_1   3ej6_CD_1   3ej6_BA_1
      3ej6_DC_1   1dgb_AB_1   1dgg_AD_1   1dgh_AD_1   1dgf_BC_1   1dgf_CB_1   1dgb_BA_1   1dgg_DA_1   1dgh_DA_1   1qqw_AB_1
      1qqw_DC_1   1qqw_BA_1   1qqw_CD_1   4blc_AB_1   4blc_BA_1   1tgu_AB_1   1th3_AB_1   1th2_AB_1   1th4_AB_1   1tgu_CD_1
      1th3_CD_1   1th2_CD_1   1th4_CD_1   1tgu_DC_1   1th3_DC_1   1th4_DC_1   1th2_DC_1   1tgu_BA_1   1th3_BA_1   1th2_BA_1
      1th4_BA_1   4blc_CD_1   4blc_DC_1   1dgb_CD_1   1dgb_DC_1   1dgg_BC_1   1dgg_CB_1   1dgh_BC_1   1dgh_CB_1   1dgf_AD_1
      1dgf_DA_1   1f4j_AB_1   1f4j_BA_1   1f4j_CD_1   1f4j_DC_1   1m7s_AB_1   1m7s_BA_1   1m7s_CD_1   1m7s_DC_1   1si8_AB_1
      1si8_BA_1   1si8_CD_1   1si8_DC_1   2isa_AD_2   2isa_EH_2   2isa_DA_2   2isa_HE_2   2isa_GF_2   2isa_CB_2   2isa_FG_2
      2isa_BC_2

Peptides
PartnerDomains

Dist Members Intf Alignment
      1p81_CD_1   R     T     N     Q     S     I     F     E     S     Y     Q     E     R     V     E     G     N
      K     V
      1a4e_AC_1                                                   I     Q     Q           V     W     N     G     P
      A
      1a4e_DB_1                                                   I     Q     Q     E     V     W     N     G     P
      A
      3ej6_AB_1               E           Y     L     F           T                 R     T     A     S     G     V
      L
      3ej6_CD_1               E           Y     L     F           T     T           R     T     A     S     G     V
      L
      1dgb_AB_1                           S                                   S     I     Q     Y     S     G     E
      V     R
      1dgf_BC_1                           S     F                             S     I     Q     Y     S     G     E
      V     R
      1qqw_AB_1                                             L     E     H     S     I     Q     Y     S     G     E
      V     R
      4blc_AB_1                           S                 L     E     H     R     T     H     F     S     G     D
      V     Q
      1th2_CD_1                           S     F                             R     T     H     F     S     G     D
      V     Q
      1dgb_CD_1                           S                 L     E     H     S     I     Q     Y     S     G     E
      V     R
      1dgf_DA_1                           S     F                       H     S     I     Q     Y     S     G     E
      V     R
      1m7s_AB_1                           R     L           R     Y     S     E     L     P     L     S     G     T
      T     Q
      1si8_AB_1                           S                 K                 S     F     E     V     E     G     N
      V     G
      1si8_DC_1                           S                 K     I     S     S     F     E     V     E     G     N
      V     G
      2isa_AD_2                                                               P     L     N     L           G     A
      A     A
      2isa_EH_2                           D                                   P     L     N     L           G     A
      A     A

Dist Members ResidueID Alignment
      1p81_CD_1   278   403   404   409   464   465   482   483   484   485   486   487   488   489   490   491
      492   493   494
      1a4e_AC_1                                                   418   419   420         424   425   426   427
      428   429
      1a4e_DB_1                                                   418   419   420   423   424   425   426   427
      428   429
        3ej6_AB_1               378         438   439   455         457               461   462   463    464   465
        466   467
        3ej6_CD_1               378         438   439   455         457   458         461   462   463    464   465
        466   467
        1dgb_AB_1                           408                                 422   423   424   425    426   427
        428   429   430
        1dgf_BC_1                           408   409                           422   423   424   425    426   427
        428   429   430
        1qqw_AB_1                                             419   420   421   422   423   424   425    426   427
        428   429   430
        4blc_AB_1                           407               418   419   420   421   422   423   424    425   426
        427   428   429
        1th2_CD_1                           407   408                           421   422   423   424    425   426
        427   428   429
        1dgb_CD_1                           408               419   420   421   422   423   424   425    426   427
        428   429   430
        1dgf_DA_1                           408   409                     421   422   423   424   425    426   427
        428   429   430
        1m7s_AB_1                           406   407         417   418   419   420   421   422   423    424   425
        426   427   428
        1si8_AB_1                           385               397               400   401   402   403    404   405
        406   407   408
        1si8_DC_1                           385               397   398   399   400   401   402   403    404   405
        406   407   408
        2isa_AD_2                                                               400   401   402   403          405
        406   407   408
        2isa_EH_2                           386                                 400   401   402   403          405
        406   407   408

Alignment Occupancy     0.058 0.058 0.176 0.058 0.764 0.411 0.176 0.411 0.588 0.588 0.882 0.941 1        1     0.882 1
      1     1     0.764
Gap in betw Columns     11,19 0     0     0,2   0     0     0     0     0     0     0

SLIM   RegEx        [IETSY][HSQTY][SQPRE].{0,2}[ILFTRE][QHTNEVPR][YLVFAW][SEN]G[ENADPVT][VALTK][RQAGV]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 32.0473029612445
SLIM   I=181997 Im=4894 Id=14 Idm=1
SLIM   PSSM p-value 0.264153033936043

PSSM Listing
Pos 0 Y(4.168) E(3.272) I(2.271) T(1.915) S(1.319) D(0.527) Q(0.412) F(0.329) L(0.306) H(-0.27) K(-0.39) M(-0.52)
V(-0.62) N(-0.75) W(-0.77) P(-0.87) G(-0.89) A(-1.07) R(-1.35) C(-1.95)
Gap (0)
Pos 1 H(6.554) Y(4.194) Q(2.884) S(1.916) T(1.359) F(0.260) E(0.253) N(0.134) D(0.037) R(-0.46) K(-0.52) W(-0.71)
A(-0.85) G(-1.11) P(-1.26) M(-1.44) V(-2.37) C(-2.40) L(-2.61) I(-2.76)
Gap (0)
Pos 2 P(4.861) Q(3.310) S(3.126) R(2.899) E(2.361) K(0.674) T(0.540) N(0.415) A(0.256) D(0.078) H(-0.65) G(-0.74)
M(-0.92) C(-1.75) Y(-1.89) L(-2.26) V(-2.26) I(-2.53) F(-2.58) W(-2.89)
Gap (0,2)
Pos 3 F(3.870) E(2.874) R(2.871) I(2.862) L(2.481) T(1.896) V(1.484) Y(0.949) M(0.843) Q(0.300) K(0.300) D(0.205)
S(-0.57) H(-0.86) P(-0.90) N(-0.96) W(-0.97) G(-1.00) A(-1.14) C(-1.42)
Gap (0)
Pos 4 H(5.861) P(4.174) N(3.879) Q(3.808) E(2.999) R(2.296) T(1.983) V(1.874) I(0.882) D(0.769) K(0.625) S(0.143)
Y(0.076) M(-0.30) G(-0.63) L(-0.90) A(-0.94) F(-2.01) C(-2.11) W(-2.53)
Gap (0)
Pos 5 W(8.860) Y(5.786) F(3.987) V(2.591) L(2.341) A(1.906) I(1.633) H(0.817) M(0.740) S(-0.84) C(-1.14) Q(-1.50)
G(-1.79) T(-1.87) K(-1.94) E(-2.05) R(-2.05) N(-2.21) P(-2.35) D(-2.98)
Gap (0)
Pos 6 N(3.896) S(3.484) E(3.291) D(0.793) Q(0.698) T(0.638) A(0.518) K(0.170) G(-0.31) R(-0.67) H(-0.82) P(-1.21)
M(-1.36) C(-1.48) Y(-2.12) I(-2.36) L(-2.36) V(-2.36) F(-2.36) W(-3.21)
Gap (0)
Pos 7 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 8 P(4.862) N(4.276) D(3.918) E(3.803) A(1.910) V(1.870) T(1.477) Q(0.966) I(0.895) S(0.357) K(0.165) R(-0.55)
G(-0.58) H(-0.69) M(-0.75) L(-0.91) C(-1.56) Y(-1.94) F(-2.31) W(-3.30)
Gap (0)
Pos 9 V(3.443) A(2.599) I(2.451) K(2.193) L(2.075) T(1.236) M(0.891) S(-0.05) R(-0.53) C(-0.69) G(-0.84) Q(-0.93)
E(-0.96) F(-1.03) P(-1.06) Y(-1.25) D(-1.41) N(-1.44) H(-1.93) W(-2.81)
Gap (0)
Pos 10 G(3.863) R(3.788) Q(3.297) A(1.912) V(1.218) K(1.000) E(0.509) I(0.223) S(-0.31) T(-0.42) N(-0.62) H(-0.68)
M(-0.70) D(-1.27) L(-1.31) P(-1.76) C(-1.78) Y(-1.90) F(-2.70) W(-2.76)
//

===============================
 SLIM 67
===============================
ID           CesT.clust.0.2.1
Center             1l2w_EK_0
AvSimToCtr 0.537
AvRMSDToCtr 0.675 A
Size         8
NumDistinct 4
FracDDI            0.75
FracPeptides       0.25
FracIntra    0
Species            YERSINIA PSEUDOTUBERCULOSIS (3)
Conservation       1

Members
        1l2w_AI_0 1l2w_DJ_0 1l2w_FK_0 1l2w_GL_0 1l2w_BI_0 1l2w_CJ_0 1l2w_HL_0 1ttw_AB_0

Peptides
      1ttw-B

PartnerDomains
      YopE_N (1l2w_EK_0,1l2w_AI_0,1l2w_DJ_0)

Dist Members Intf   Alignment
      1l2w_EK_0     L     A      R      T      E      S      P      Q      G      S      S      L      A     R      I     I      E
      R     L       V     S      V      F      I      R      M      F
      1l2w_AI_0                                                                                                     S     V      S
      Q     Q
      1l2w_DJ_0                                                                                              R      S     V      S
      Q     Q
      1ttw_AB_0                                                                                 V                         T      Q
      A     I       T            E      F      A                    L

Dist Members ResidueID Alignment
      1l2w_EK_0   43    44    46        47     48     49     50     51     52     53     54     55     56    58     59    60
      61    62    63    66    69        70     73     74     76     77     78
      1l2w_AI_0                                                                                                     30    31
      32    33    34
      1l2w_DJ_0                                                                                              29     30    31
      32    33    34
      1ttw_AB_0                                                                                 33                        35
      36    37    38    39              42     45     46                   50

Alignment Occupancy       0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.5   0.25   0.5   0.75   1
      1     1     1       0.5    0.25   0.5    0.5    0.5    0.25   0.25   0.5
Gap in betw Columns       2      0      0      0      0      0      0,2    2,3    2      0      3

SLIM   RegEx        [LV]..R[SI][VTI][SQE][QAR][QIL].{0,2}[TV].{2,3}[EV]..F[AI].{3}[FL]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 22.6366005297429
SLIM   I=181997 Im=4216 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 V(2.926) L(2.662) I(1.926) M(0.926) A(-1.07) F(-1.07) C(-1.69) Y(-1.69) S(-2.69) T(-2.69) Q(-2.69) K(-2.69)
P(-3.07) E(-3.07) R(-3.07) W(-3.07) N(-3.69) H(-3.69) G(-4.07) D(-4.07)
Gap (2)
Pos 1 R(4.306) K(1.306) Q(0.306) N(-0.69) E(-0.69) H(-0.69) S(-1.69) T(-1.69) A(-1.69) M(-1.69) P(-2.69) G(-2.69)
D(-2.69) L(-2.69) Y(-2.69) C(-3.69) I(-3.69) V(-3.69) F(-3.69) W(-3.69)
Gap (0)
Pos 2 S(3.308) I(2.618) L(0.649) A(0.372) T(0.331) N(0.315) M(-0.14) V(-0.29) D(-0.66) E(-0.66) Q(-0.66) K(-0.66)
G(-0.68) F(-1.14) C(-1.28) P(-1.62) H(-1.62) R(-1.62) Y(-1.83) W(-3.28)
Gap (0)
Pos 3 V(3.332) I(3.166) T(2.621) L(1.175) M(0.756) S(-0.24) P(-0.27) D(-0.33) G(-0.34) A(-0.37) F(-0.75) C(-1) E(-
1.10) Q(-1.10) K(-1.10) Y(-1.17) N(-1.24) H(-1.24) R(-2.04) W(-3)
Gap (0)
Pos 4 E(3.675) Q(3.675) S(3.325) D(0.954) T(0.620) N(0.620) K(0.620) A(0.433) R(0.107) H(-0.37) G(-0.56) M(-0.75)
P(-1) C(-1.60) Y(-1.64) L(-2.17) V(-2.17) I(-2.37) F(-2.37) W(-2.64)
Gap (0)
Pos 5 Q(4.317) R(3.652) A(2.633) E(1.395) K(1.193) S(0.240) N(-0.17) H(-0.24) T(-0.37) M(-0.37) D(-0.56) G(-1.04)
P(-1.17) C(-1.24) Y(-1.37) L(-1.64) I(-2.04) V(-2.17) W(-2.37) F(-2.64)
Gap (0)
Pos 6 Q(4.307) L(2.744) I(2.742) V(1.752) E(1.313) M(1.107) R(0.340) K(0.340) S(-0.56) T(-0.56) N(-0.64) H(-0.64)
F(-0.64) D(-0.65) A(-1) Y(-1) C(-1.56) P(-1.56) W(-2.17) G(-2.56)
Gap (0,2)
Pos 7 T(2.616) V(2.616) I(1.620) M(-0.25) S(-0.33) P(-0.33) L(-0.33) G(-0.36) D(-0.36) A(-1.07) E(-1.25) Q(-1.25)
K(-1.25) N(-1.33) H(-1.33) C(-1.69) F(-2.07) Y(-2.07) R(-2.25) W(-3.69)
Gap (2,3)
Pos 8 E(3.614) V(2.614) I(1.616) Q(0.631) D(0.620) K(-0.33) M(-0.33) L(-0.36) A(-1.07) S(-1.25) T(-1.25) N(-1.33)
H(-1.33) R(-1.33) P(-2.07) Y(-2.07) F(-2.25) C(-2.33) G(-3.07) W(-3.69)
Gap (2)
Pos 9 F(5.306) Y(2.306) W(0.306) M(-0.69) I(-0.69) L(-0.69) H(-1.69) V(-1.69) C(-2.69) S(-2.69) T(-2.69) A(-2.69)
G(-3.69) N(-3.69) D(-3.69) E(-3.69) Q(-3.69) R(-3.69) K(-3.69) P(-4.69)
Gap (0)
Pos 10 A(2.620) I(2.620) L(0.662) M(-0.25) S(-0.33) V(-0.33) C(-1.07) F(-1.25) G(-1.36) T(-2.07) Y(-2.07) P(-2.25)
N(-2.25) E(-2.25) Q(-2.25) R(-2.25) K(-2.25) D(-3.07) H(-3.07) W(-3.69)
Gap (3)
Pos 11 F(4.616) L(2.631) V(1.631) Y(1.631) M(0.740) I(0.740) W(-0.33) C(-2.07) A(-2.07) H(-2.25) S(-2.69) T(-2.69)
Q(-3.07) R(-3.07) K(-3.07) N(-3.69) E(-3.69) P(-4.07) G(-4.07) D(-4.07)
//

===============================
 SLIM 68
===============================
ID           ClpS.clust.0.15.2
Center             1mbu_DA_0
AvSimToCtr 0.433
AvRMSDToCtr 1.725 A
Size         8
NumDistinct 6
FracDDI            0.833333333333333
FracPeptides       0
FracIntra    0
Species            ESCHERICHIA COLI (6)
Conservation       1
Members
      1r6q_DA_0 1mbx_DA_0 1r6o_DA_0 2wa9_EB_0 2wa9_FD_0 2wa9_GC_0 2wa9_CG_0 2wa9_DF_0

Peptides

PartnerDomains
      ClpS (2wa9_EB_0,2wa9_FD_0,2wa9_GC_0,2wa9_CG_0,2wa9_DF_0)

Dist Members Intf Alignment
      1mbu_DA_0   Q     E       L     N     M     A     R     R     E
      2wa9_EB_0                 E     T     Q     L           Y
      2wa9_FD_0         V       E     T     Q     L           H     Y
      2wa9_GC_0                 E     T     Q           L     H     Y
      2wa9_CG_0         V       E     T           M     L     H     Y
      2wa9_DF_0                       V     E     T     Q     M     L

Dist Members ResidueID Alignment
      1mbu_DA_0   4     7     8       11    12    15    16    18    19
      2wa9_EB_0               56      59    60    63          67
      2wa9_FD_0         55    56      59    60    63          66    67
      2wa9_GC_0               56      59    60          63    66    67
      2wa9_CG_0         55    56      59          62    63    66    67
      2wa9_DF_0                       55    56    59    60    62    63

Alignment Occupancy       0.166 0.5   0.833 1     0.833 0.833 0.666 1    0.833
Gap in betw Columns       0     2     0     2     0     1,2   0

SLIM   RegEx        [VE][EL]..[TNV][QME]..[LATM][LQR].{1,2}[HMRY][YLE]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 23.2779294202286
SLIM   I=181997 Im=6195 Id=16 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(3.210) V(2.901) I(1.902) Q(0.244) D(0.221) M(-0.07) L(-0.08) K(-0.69) A(-0.92) S(-1.55) T(-1.55) N(-1.69)
H(-1.69) R(-1.69) Y(-1.92) F(-2.03) C(-2.07) P(-2.24) G(-3.24) W(-3.69)
Gap (0)
Pos 1 E(4.594) L(2.211) Q(1.599) D(1.595) V(1.218) K(0.606) M(0.278) I(0.234) S(-0.37) T(-0.37) R(-0.37) N(-0.39)
H(-0.39) A(-1.18) P(-1.37) F(-1.61) Y(-1.88) G(-2.37) C(-2.61) W(-2.88)
Gap (2)
Pos 2 N(4.218) T(3.599) V(2.219) I(1.237) S(0.827) D(0.821) G(0.686) P(0.619) E(-0.15) Q(-0.15) K(-0.15) H(-0.30)
M(-0.32) L(-0.59) A(-0.83) R(-0.86) C(-1.15) Y(-1.74) F(-1.83) W(-3.11)
Gap (0)
Pos 3 Q(4.325) E(3.348) M(3.229) K(0.627) D(0.553) R(0.461) L(0.268) S(-0.31)   T(-0.31) N(-0.37) H(-0.37) I(-0.72)
A(-1.18) P(-1.31) Y(-1.31) F(-1.61) W(-1.98) G(-2.31) V(-2.31) C(-2.41)
Gap (2)
Pos 4 M(3.307) L(2.971) A(2.234) T(2.226) V(1.911) I(1.098) S(0.012) G(-0.45)   P(-0.59) F(-0.60) D(-0.71) Q(-0.82)
C(-0.88) K(-1.09) N(-1.32) E(-1.32) R(-1.47) Y(-1.47) H(-1.47) W(-2.09)
Gap (0)
Pos 5 Q(3.228) R(3.228) L(2.903) V(1.905) M(0.989) I(0.908) K(0.547) E(0.346)   N(-1.05) H(-1.05) F(-1.05) S(-1.29)
T(-1.29) A(-1.40) Y(-1.57) D(-1.63) C(-1.97) P(-2.29) W(-2.57) G(-2.97)
Gap (1,2)
Pos 6 H(7.307) Y(5.228) R(3.231) M(3.215) F(1.310) N(0.451) K(0.405) D(0.335)   W(0.313) L(0.292) Q(0.166) E(-0.33)
T(-0.43) I(-0.60) S(-1.11) A(-1.54) V(-1.83) P(-2.11) C(-2.14) G(-2.23)
Gap (0)
Pos 7 Y(6.307) E(3.211) F(2.324) L(2.229) H(1.353) W(1.315) V(1.264) Q(0.363)   M(0.363) I(0.353) D(0.230) K(-0.61)
S(-1.35) T(-1.35) R(-1.35) N(-1.41) A(-1.65) C(-2.02) P(-2.35) G(-2.98)
//

===============================
 SLIM 69
===============================
ID           CoA_binding.clust.0.15.2
Center             2dt5_AB_1
AvSimToCtr 0.449
AvRMSDToCtr 1.133 A
Size         11
NumDistinct 4
FracDDI            0
FracPeptides       0
FracIntra    0
Species            BACILLUS SUBTILIS (3), THERMUS THERMOPHILUS (1)
Conservation       0.75

Members
      1xcb_AB_1 1xcb_CD_1 1xcb_EF_1 1xcb_BA_1 1xcb_DC_1 1xcb_FE_1 2dt5_BA_1 2vt2_AB_1 2vt3_AB_1 2vt2_BA_2
      2vt3_BA_2

Peptides

PartnerDomains

Dist Members Intf   Alignment
      2dt5_AB_1     R     L     S   A     D     Y     P     F        P   V      D     F     L     G     L     T       L
      S     I       L
      2vt2_AB_1     N     L     T   A     H     Y           F        P   I      D     L                               L
            L
        2vt3_AB_1   N     L     T     A     H     Y              F     P      I      D      L     A      E     L             L
        V     L     K
        2vt3_BA_2   N     L     T     A     H     Y        N                         D                   E     L             L
        V     L

Dist Members ResidueID Alignment
      2dt5_AB_1   90    91    93      94    97    98       99    171   173    187    188    189   190    192   193    194
      196   197   200   201
      2vt2_AB_1   95    96    98      99    102   103            176   178    192    193    194
      201         205
      2vt3_AB_1   95    96    98      99    102   103            176   178    192    193    194   195    197   198
      201   202   205   206
      2vt3_BA_2   95    96    98      99    102   103      104                       193                 197   198
      201   202   205

Alignment Occupancy       1     1     1     1     1        1     0.5   0.75   0.75   0.75   1     0.75   0.5   0.75   0.75
      0.25 1      0.75    1     0.5
Gap in betw Columns       0     1     0     2     0        0     71    1      13     0      0     0      1     0      2      0
      2     0

SLIM   RegEx        [IV]D[LF][AL].[EG]L..L[VS]..[LI][KL]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 21.2660281110844
SLIM   I=181997 Im=4824 Id=17 Idm=1
SLIM   PSSM p-value 0.293194171171595

PSSM Listing
Pos 0 I(3.475) V(2.708) L(1.475) M(0.712) F(-0.52) A(-0.83) C(-1.28) Y(-1.28)        S(-2.28) T(-2.28) P(-2.83) E(-2.83)
Q(-2.83) K(-2.83) N(-3.28) D(-3.28) H(-3.28) R(-3.28) W(-3.28) G(-3.83)
Gap (0)
Pos 1 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3)        M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (0)
Pos 2 F(4.618) L(3.315) V(2.315) Y(1.649) M(1.372) I(1.372) W(-0.29) C(-1.52)        A(-1.52) H(-2.14) S(-2.28) T(-2.28)
Q(-2.52) R(-2.52) K(-2.52) N(-3.28) E(-3.28) P(-3.52) G(-3.83) D(-3.83)
Gap (0)
Pos 3 A(2.620) L(2.620) V(1.620) M(0.662) I(0.662) S(-0.33) C(-1.07) F(-1.25)        G(-1.36) T(-2.07) Q(-2.07) R(-2.07)
K(-2.07) Y(-2.07) P(-2.25) N(-2.25) E(-2.25) H(-3.07) W(-3.07) D(-3.25)
Gap (1)
Pos 4 G(4.614) E(4.307) D(1.331) Q(1.315) K(0.331) T(0.165) S(-0.28) N(-0.62)        H(-0.62) R(-0.62) A(-0.83) V(-1.29)
P(-1.52) M(-2.52) Y(-2.52) W(-2.83) F(-3.28) I(-3.52) L(-3.52) C(-3.83)
Gap (0)
Pos 5 L(3.712) V(2.712) M(1.712) I(1.712) F(-0.28) C(-1.28) A(-1.28) Y(-1.28)        S(-2.28) T(-2.28) Q(-2.28) R(-2.28)
K(-2.28) W(-2.28) P(-3.28) N(-3.28) E(-3.28) H(-3.28) G(-4.28) D(-4.28)
Gap (2)
Pos 6 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 7 V(3.308) S(2.618) I(2.310) M(0.372) L(0.331) A(0.165) T(-0.29) N(-0.35) E(-1.14) Q(-1.14) K(-1.14) C(-1.28)
G(-1.29) D(-1.29) F(-1.52) Y(-1.52) P(-1.83) H(-2.14) R(-2.14) W(-3.28)
Gap (2)
Pos 8 L(3.756) I(2.954) V(2.756) M(1.827) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2.17) R(-2.17) K(-2.17) W(-2.17)
P(-3) N(-3) E(-3) H(-3) D(-3.64) G(-4)
Gap (0)
Pos 9 K(3.614) L(2.616) V(1.616) M(0.662) R(0.631) I(0.620) Q(-0.33) E(-0.36) S(-1.25) T(-1.25) N(-1.33) F(-1.33)
A(-1.69) Y(-2.07) C(-2.25) P(-2.25) H(-2.25) D(-2.33) W(-3.07) G(-3.25)
//

===============================
 SLIM 70
===============================
ID           Cob_adeno_trans.clust.0.15.0
Center             2zhz_CA_0
AvSimToCtr 0.391
AvRMSDToCtr 1.194 A
Size         39
NumDistinct 20
FracDDI            0.8
FracPeptides       0
FracIntra    0
Species            PYROCOCCUS HORIKOSHII OT3 (5), BACILLUS SUBTILIS (4), BURKHOLDERIA THAILANDENSIS (4), HOMO
SAPIENS (2)
Conservation       0.333333333333333

Members
      1rty_AB_0   1rty_BC_0   1rty_CA_0   2ah6_AC_0   2ah6_CB_0   2ah6_BA_0   2zhy_AC_0   2zhz_CB_0   2zhy_BA_0 2zhz_AC_0
      2zhz_BA_0   2zhy_CB_0   1wvt_AC_0   1wvt_BA_0   1wvt_CB_0   1wy1_AB_0   1wy1_BC_0   1wy1_CA_0   2idx_AB_0 1rty_AC_0
      1rty_BA_0   1rty_CB_0   2zhy_AB_0   2zhz_AB_0   2zhy_BC_0   2zhy_CA_0   2zhz_BC_0   2ah6_AB_0   2ah6_BC_0 2ah6_CA_0
      1wvt_AB_0   1wvt_BC_0   1wvt_CA_0   2idx_AC_0   2idx_BA_0   2idx_CB_0   1wy1_AC_0   1wy1_BA_0   1wy1_CB_0

Peptides

PartnerDomains
      Cob_adeno_trans
(2zhz_CA_0,1rty_BC_0,2ah6_AC_0,2zhy_BA_0,1wvt_AC_0,1wy1_AB_0,1wy1_BC_0,1rty_AC_0,1rty_BA_0,2ah6_AB_0,2ah6_BC_0,1wvt
_AB_0,2idx_AC_0,1wy1_AC_0,1wy1_BA_0,1wy1_CB_0)

Dist Members Intf Alignment
      2zhz_CA_0   D     I         A       G     D       D     E       N       S     Q       G     V       A     E     S     Q   H
      F     R
      1rty_AB_0         S     K     S     L     H     I     R     T     I     R     R     R     R
      1rty_BC_0                                       K           S     L     H     I     T
      2ah6_AC_0                     G     G     S     E           A     S     H     V     T     I
      E
      2zhy_AC_0         A     R     A     L     H     V     R     T     V     R     R     R
      2zhy_BA_0         A     R     A     L     H     V     R     T     V     R     R     R           N
      2zhz_AC_0                                       R           A     L     H     V     T
      1wvt_AC_0               I     S     F     H     L     R     A     V     R     R
      1wy1_AB_0                                       L           A     K     D     V     T
      1wy1_BC_0                                 T     L           A     K     D     V     T     I
      2idx_AB_0                                 G     K           S     A     H     F     A
      1rty_AC_0         V     E     G     T     D     E     N     S     F     G     L     A                 Q    H
      F     R
      1rty_BA_0         V     E     G     T     D     E     N     S     F     G     L     A           L     Q    H
      F     R
      2ah6_AB_0                                 D     E     N     S     F     G     S     T     Q     F     Q    H
      F     R
      2ah6_BC_0   D     V     V     G     T     D     E     N     S     F     G     S     T           F     Q    H
      F     R
      1wvt_AB_0         V     K     G     D     D     E     N     S     V     G     V     S     L     Q     Q    N
      F     R
      2idx_AC_0         F     E     G     T     D     E     S     S     A     G     F     E     L     Q     Q    C
      Q     R
      1wy1_AC_0         I     E     G           D     E     T     S     F     G     E                 E     Q    N
      Y
      1wy1_BA_0         I           G           D     E     T     S     F     G     E                 E     Q    N
      Y     R
      1wy1_CB_0         I     E     G           D     E     T     S     F     G     E                 E     Q    N
      Y     R

Dist Members ResidueID Alignment
      2zhz_CA_0   30    33    34    37    38    40    41    43    44    45    47    48    51    52    63    66
      67    70    130
      1rty_AB_0         116   117   120   121   123   124   126   127   128   130   131   134   135
      1rty_BC_0                                       117         120   121   123   124   127
      2ah6_AC_0                     115   116   117   118         121   122   124   125   128   129
      178
      2zhy_AC_0         115   116   119   120   122   123   125   126   127   129   130   133
      2zhy_BA_0         115   116   119   120   122   123   125   126   127   129   130   133         153
      2zhz_AC_0                                       116         119   120   122   123   126
      1wvt_AC_0               107   110   111   113   114   116   117   118   120   121
      1wy1_AB_0                                       110         113   114   116   117   120
      1wy1_BC_0                                 109   110         113   114   116   117   120   121
      2idx_AB_0                                 176   177         180   181   183   184   187
        1rty_AC_0         27     28    31    32    34     35     37   38    39   41    42    45                  64
        65    68    131
        1rty_BA_0         27     28    31    32    34     35     37   38    39   41    42    45           61     64
        65    68    131
        2ah6_AB_0                                  34     35     37   38    39   41    42    45     46    60     63
        64    67    132
        2ah6_BC_0   24    27     28    31    32    34     35     37   38    39   41    42    45           60     63
        64    67    132
        1wvt_AB_0         27     28    31    32    34     35     37   38    39   41    42    45     46    55     58
        59    62    121
        2idx_AC_0         83     84    87    88    90     91     93   94    95   97    98    101    102   115    118
        119   122   191
        1wy1_AC_0         28     29    32          35     36     38   39    40   42    43                 57     60
        61    64
        1wy1_BA_0         28           32          35     36     38   39    40   42    43                 57     60
        61    64    124
        1wy1_CB_0         28     29    32          35     36     38   39    40   42    43                 57     60
        61    64    124

Alignment Occupancy       0.1    0.6   0.6   0.7   0.55   0.85   1    0.7   1    1     1     1      0.8   0.35   0.5
      0.5   0.5   0.55    0.45
Gap in betw Columns       0      2     0     0,1   0      1      0    0     1    0     2     9,19   2     0      2

SLIM   RegEx        [IVAFS][ERKAIV]..[GAS][TLDFG].{0,1}[DHSTG][ELKVRI].[NRTS][SAT][FVAKLSQI].[GHRD][VRESFLI]..[TARSE]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 29.9356127435456
SLIM   I=181997 Im=5564 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 F(3.018) I(2.710) V(2.442) A(1.770) S(1.119) L(0.749) M(0.176) Y(0.158)    C(-1.30) T(-1.45) N(-1.63) G(-1.79)
W(-1.81) E(-2.06) Q(-2.06) K(-2.06) P(-2.37) D(-2.45) R(-2.55) H(-2.65)
Gap (0)
Pos 1 E(3.624) K(2.790) R(2.763) I(1.328) A(1.086) V(1.062) Q(0.883) D(0.646)    L(-0.57) S(-0.62) N(-0.74) T(-0.87)
H(-0.91) M(-0.92) P(-1.77) G(-2.16) Y(-2.25) C(-2.28) F(-2.32) W(-3.51)
Gap (2)
Pos 2 G(5.307) S(1.829) A(1.829) T(0.511) V(-0.64) N(-0.97) D(-1.21) E(-1.58)    Q(-1.58) K(-1.58) C(-1.82) P(-1.95)
R(-1.95) H(-2.13) M(-2.31) W(-2.55) I(-2.82) L(-2.82) F(-2.95) Y(-2.95)
Gap (0)
Pos 3 D(3.711) G(3.032) F(3.013) T(2.429) L(2.112) V(1.135) M(0.214) I(0.175)    Y(0.089) E(-0.04) S(-0.32) P(-0.51)
N(-0.71) Q(-1.11) H(-1.31) K(-1.32) A(-1.61) W(-1.74) C(-1.94) R(-2.14)
Gap (0,1)
Pos 4 H(6.390) D(5.310) G(3.023) T(1.517) E(1.386) S(1.249) N(0.739) Y(0.417)    Q(-0.21) P(-0.98) K(-1.00) R(-1.16)
A(-1.20) V(-2.15) F(-2.16) M(-2.39) C(-2.60) I(-3.00) W(-3.03) L(-3.39)
Gap (0)
Pos 5 E(4.406) K(2.817) L(2.183) R(2.167) V(2.156) I(1.771) Q(1.505) D(1.415) M(0.498) N(-0.33) S(-0.34) T(-0.34)
H(-0.42) A(-0.84) F(-1.30) P(-1.31) Y(-1.58) C(-2.05) G(-2.26) W(-2.77)
Gap (1)
Pos 6 N(4.800) R(3.403) T(2.163) S(1.392) K(0.681) D(0.262) Q(0.042) G(-0.24) E(-0.35) P(-0.70) H(-0.73) A(-1.18)
M(-1.67) C(-2.31) Y(-2.35) L(-2.67) I(-2.95) V(-2.95) F(-2.95) W(-3.67)
Gap (0)
Pos 7 S(3.521) A(2.730) T(2.293) N(0.627) G(0.229) D(0.040) E(-0.17) Q(-0.17) K(-0.17) P(-0.32) C(-0.64) H(-0.90)
R(-1) M(-1) I(-1.64) L(-1.64) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 8 F(4.951) K(2.716) V(2.582) I(2.065) Q(2.059) Y(1.975) L(1.914) A(1.783) S(1.177) M(0.647) W(-0.00) R(-0.02)
E(-0.24) T(-0.87) N(-1.02) C(-1.19) H(-1.32) G(-1.60) D(-1.70) P(-1.88)
Gap (1)
Pos 9 H(6.391) G(5.307) D(3.715) R(3.399) T(0.644) K(0.504) Y(0.428) E(0.187) N(0.079) Q(-0.09) S(-0.29) A(-0.48)
V(-0.61) P(-1.84) M(-2.03) F(-2.17) W(-2.23) C(-3) L(-3.03) I(-3.37)
Gap (0)
Pos 10 F(3.704) R(3.398) E(3.118) V(2.922) I(2.264) L(1.915) S(1.750) Y(0.804) K(0.716) M(0.652) Q(0.595) D(0.230)
A(-0.26) N(-0.43) T(-0.56) H(-0.80) W(-1.12) C(-1.47) G(-1.77) P(-1.77)
Gap (2)
Pos 11 R(3.114) T(2.966) A(2.421) E(2.084) S(1.465) K(0.541) D(0.349) Q(0.223) G(0.205) P(0.078) N(-0.27) H(-0.51)
C(-1.03) M(-1.26) L(-1.89) I(-1.98) Y(-2.22) V(-2.39) F(-2.39) W(-3.22)
//

===============================
 SLIM 71
===============================
ID           Cohesin.clust.0.15.0
Center             2ccl_AB_0
AvSimToCtr 0.464
AvRMSDToCtr 0.804 A
Size         5
NumDistinct 5
FracDDI            0.2
FracPeptides       0
FracIntra    0
Species            CLOSTRIDIUM CELLULOLYTICUM (3), CLOSTRIDIUM THERMOCELLUM (2)
Conservation       0.6

Members
      1ohz_AB_0 2ccl_CD_0 2vn5_AB_0 2vn5_CD_0 2vn6_AB_0

Peptides

PartnerDomains
      Dockerin_1 (2ccl_AB_0)
Dist Members Intf Alignment
      2ccl_AB_0   D     I       N     S     T     L     T      M    K     R    L     A     S     L     L     R     V
      1ohz_AB_0                 N     S     T     V     L      L    S
      2vn5_AB_0                 D     A     L     F     A           K     K    M           K     L     L     G
      2vn5_CD_0                 D     A     L     F     A           K     K    M           K     L     L     G     M
      2vn6_AB_0                 N     A     F     L     A           K     K    L     M

Dist Members ResidueID Alignment
      2ccl_AB_0   6     9     10      11    12    14    15     16   18    19   22    24    52    55    56    57
      58
      1ohz_AB_0               44      45    46    48    49     50   52
      2vn5_AB_0               15      16    17    19    20          23    24   27          54    57    58    59
      2vn5_CD_0               15      16    17    19    20          23    24   27          54    57    58    59
      60
      2vn6_AB_0               46      47    48    50    51          54    55   58    60

Alignment Occupancy       0.2   0.2   1     1     1     1      1    0.4   1    0.8   0.8   0.4   0.6   0.6   0.6
      0.6   0.4
Gap in betw Columns       0     0     1     0     2     0      2    23,29 2    0     0

SLIM   RegEx        [ND][AS][TLF].[FLV][ATL]..[KS][KR]..[ML]
SLIM   Coverage           0.8
SLIM   PSSM Match Cutoff 21.645590543194
SLIM   I=181997 Im=5202 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 N(5.493) D(5.093) E(1.268) S(0.708) T(0.523) Q(0) G(-0.29) K(-0.29) R(-0.42) H(-1) P(-1.47) A(-2) M(-2.29)
Y(-2.29) C(-3) I(-3) V(-3) F(-3) L(-3.29) W(-4)
Gap (0)
Pos 1 A(3.521) S(3.155) T(0.268) N(0.268) G(0) C(-0.29) E(-0.47) Q(-0.47) K(-0.47) D(-0.73) P(-1) R(-1) M(-1) I(-
1.29) L(-1.29) H(-1.47) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 2 F(4.396) L(3.095) T(3.087) V(2.099) Y(1.439) M(1.194) I(1.166) S(0.155) P(0.105) G(0.099) D(0.099) W(-0.48)
H(-0.70) Q(-0.76) K(-0.76) N(-0.84) E(-0.84) C(-1.13) A(-1.13) R(-1.55)
Gap (1)
Pos 3 F(5.086) L(3.126) V(2.949) Y(2.110) I(1.997) M(1.360) W(0.140) A(-0.91) C(-1.29) H(-1.73) S(-2) T(-2) Q(-2.29)
K(-2.29) R(-2.47) E(-2.70) P(-2.91) N(-3) G(-3.29) D(-3.29)
Gap (0)
Pos 4 A(3.493) T(2.413) L(2.413) V(1.417) S(0.789) M(0.572) I(0.545) G(0.137) P(-0.25) C(-0.29) D(-0.46) Q(-0.80)
K(-0.80) N(-0.84) E(-0.84) R(-1.13) F(-1.17) H(-1.23) Y(-1.70) W(-2.70)
Gap (2)
Pos 5 K(4.778) S(2.461) R(1.789) E(0.864) Q(0.864) T(0.295) N(0.295) A(-0.17) D(-0.70) P(-1) H(-1) M(-1) G(-1.17)
L(-2) Y(-2) C(-2.17) I(-2.70) V(-2.70) F(-2.70) W(-3)
Gap (0)
Pos 6 K(4.505) R(3.529) Q(0.776) E(0.604) N(-0.22) S(-0.39) T(-0.39) H(-0.86) A(-1.22) M(-1.22) P(-1.39) D(-1.39)
G(-2.22) L(-2.22) Y(-2.22) C(-3.22) I(-3.22) V(-3.22) F(-3.22) W(-3.22)
Gap (2)
Pos 7 M(4.132) L(3.210) V(2.090) I(1.396) F(-0.22) Q(-0.78) C(-1.22) A(-1.22) Y(-1.22) S(-1.60) T(-1.60) R(-1.60)
K(-1.60) W(-1.60) P(-2.60) N(-2.60) E(-2.60) H(-2.60) G(-3.60) D(-3.60)
//

===============================
 SLIM 72
===============================
ID           Copper-bind.clust.0.15.1
Center             1ils_BA_0
AvSimToCtr 0.445
AvRMSDToCtr 1.462 A
Size         60
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            PSEUDOMONAS AERUGINOSA (3)
Conservation       1

Members
      1azr_AB_0   1e5y_AB_0   1e67_AB_0   1e5z_AB_0   5azu_AB_0   4azu_AB_0   1vlx_AB_0   1ils_AB_0   2azu_AB_0   1nzr_AB_0
      2tsa_AB_0   2tsb_AB_0   3azu_AB_0   3azu_DC_0   2tsa_DC_0   2tsb_DC_0   1azr_DC_0   1e5y_DC_0   1e67_DC_0   4azu_DC_0
      5azu_DC_0   1e5z_DC_0   2azu_DC_0   1ils_DC_0   1nzr_DC_0   1vlx_DC_0   1e65_AB_0   1e65_DC_0   1ezl_DC_0   1azr_BA_0
      1e5y_BA_0   1e67_BA_0   4azu_BA_0   1e5z_BA_0   5azu_BA_0   1vlx_BA_0   2azu_BA_0   1ezl_BA_0   1nzr_BA_0   2tsa_BA_0
      2tsb_BA_0   3azu_BA_0   3azu_CD_0   2tsa_CD_0   2tsb_CD_0   1gr7_BA_0   1gr7_CD_0   1azr_CD_0   1e5y_CD_0   1e67_CD_0
      4azu_CD_0   5azu_CD_0   1e5z_CD_0   2azu_CD_0   1vlx_CD_0   1ils_CD_0   1nzr_CD_0   1e65_BA_0   1e65_CD_0   1ezl_CD_0

Peptides

PartnerDomains
      Copper-bind (1ils_BA_0,1azr_AB_0,1e67_AB_0,2azu_AB_0)

Dist Members Intf   Alignment
      1ils_BA_0     A     A       M       Q     G       V     T       D       R     Q       S     A       L       K
      1azr_AB_0     A     A       M             Q             T                     Q             A       L       K
      1e67_AB_0     A     A       M             Q                     T             Q             A       L       K
      2azu_AB_0     A     A       M       Q                           T             Q             A       L       K

Dist Members ResidueID Alignment
      1ils_BA_0   53    54    56          57    58      60    61      62      79    107     118   119     120     122
      1azr_AB_0   53    54    56                57            61                    107           119     120     122
      1e67_AB_0   53    54    56                57                    61            107           119     120     122
       2azu_AB_0   53    54    56    57                         61           107        119    120   122

Alignment Occupancy      1     1     1      0.5   0.75   0.25   0.5   0.75   0.25   1   0.25   1     1     1
Gap in betw Columns      0     1     0      0     2,3    0      44,45 11     0      1

SLIM   RegEx        AA.MQ[QG].{2,3}T[TD]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 16.2933436099531
SLIM   I=181997 Im=7804 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (0)
Pos 1 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (1)
Pos 2 M(5) L(2) I(1) Q(0) F(0) C(-1) S(-1) T(-1) A(-1) R(-1) K(-1) Y(-1) W(-1) P(-2) N(-2) E(-2) H(-2) V(-2) G(-3)
D(-3)
Gap (0)
Pos 3 Q(4.306) E(1.306) R(0.306) K(0.306) S(-0.69) T(-0.69) N(-0.69) D(-0.69) H(-0.69) M(-0.69) P(-1.69) A(-1.69)
Y(-1.69) G(-2.69) L(-2.69) V(-2.69) W(-2.69) C(-3.69) I(-3.69) F(-3.69)
Gap (0)
Pos 4 G(4.614) Q(4.307) E(1.315) R(0.331) K(0.331) T(0.165) S(-0.28) D(-0.52) N(-0.62) H(-0.62) M(-0.66) A(-0.83)
V(-1.14) P(-1.52) Y(-1.62) W(-2.28) L(-2.62) C(-3.28) F(-3.28) I(-3.52)
Gap (2,3)
Pos 5 T(3.306) S(0.306) P(0.306) G(0.306) D(0.306) N(-0.69) E(-0.69) Q(-0.69) H(-0.69) K(-0.69) C(-1.69) A(-1.69)
R(-1.69) M(-1.69) I(-2.69) L(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
Gap (0)
Pos 6 D(4.627) T(3.331) E(0.853) S(0.475) P(0.372) G(0.372) N(0.165) Q(-0.28) H(-0.52) K(-0.52) A(-1.52) R(-1.52)
C(-1.62) M(-1.62) I(-2.52) V(-2.52) F(-2.52) Y(-2.52) L(-2.62) W(-3.52)
//

===============================
 SLIM 73
===============================
ID           CorC_HlyC.clust.0.2.0
Center             3ded_BA_0
AvSimToCtr 0.631
AvRMSDToCtr 0.520 A
Size         9
NumDistinct 4
FracDDI            0.75
FracPeptides       0
FracIntra    0
Species             CHLOROBIUM TEPIDUM TLS (3), CHROMOBACTERIUM VIOLACEUM (1)
Conservation        0.75

Members
      2pls_GH_0 2pls_HG_0 2pls_IJ_0 2pls_JI_0 3ded_AB_0 3ded_CD_0 3ded_DC_0 3ded_EF_0 3ded_FE_0

Peptides

PartnerDomains
      CorC_HlyC (3ded_BA_0,2pls_HG_0,2pls_JI_0)

Dist Members Intf   Alignment
      3ded_BA_0     V     Q     R      E     L      D     V      T      R      E      V     V     D     D     R     D      K
      L
      2pls_GH_0     V           R      E     L      D                          E      V     I     D     D           D      K
      L
      2pls_HG_0     V           R            L            T                    E      V     I     D     D           D      K
      L
      2pls_JI_0     V           R      E     L      D     T                    E      V     I     D     D           D      K
      L

Dist Members ResidueID Alignment
      3ded_BA_0   344   345   346      347   352    354   397    398    400    409    410   411   412   414   417   419
      420   422
      2pls_GH_0   346         348      349   354    356                        410    411   412   413   415         420
      421   423
      2pls_HG_0   346         348            354          398                  410    411   412   413   415         420
      421   423
      2pls_JI_0   346         348      349   354    356   398                  410    411   412   413   415         420
      421   423

Alignment Occupancy       1     0.25   1     0.75   1     0.75   0.75   0.25   0.25   1     1     1     1     1     0.25   1
      1     1
Gap in betw Columns       1     0      4     1      41,42 11     0      0      0      1     4     0     1

SLIM   RegEx        EV[IV]D.D.{4}DK.L
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 20.8279889392429
SLIM   I=181997 Im=8036 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3) L(-3) V(-3) F(-3) W(-3) C(-4)
Gap (0)
Pos 1 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (0)
Pos 2 I(3.827) V(2.752) L(1.827) M(1) F(-0.17) A(-0.64) C(-1) Y(-1) S(-2) T(-2) P(-2.64) E(-2.64) Q(-2.64) K(-2.64)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.64)
Gap (0)
Pos 3 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (1)
Pos 4 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (4)
Pos 5 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (0)
Pos 6 K(5) R(2) E(1) Q(1) S(0) T(0) N(0) P(-1) A(-1) D(-1) H(-1) M(-1) G(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (1)
Pos 7 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
//

===============================
 SLIM 74
===============================
ID           Cpn60_TCP1.clust.0.2.2
Center             1pcq_ES_0
AvSimToCtr 0.454
AvRMSDToCtr 1.051 A
Size         62
NumDistinct 8
FracDDI            0.5
FracPeptides       0.125
FracIntra    0
Species            THERMUS THERMOPHILUS (6), ESCHERICHIA COLI (1)
Conservation       0.857142857142857

Members
      1aon_AO_0   1aon_CQ_0   1aon_DR_0   1aon_GU_0   1aon_BP_0   1aon_ES_0   1aon_FT_0   1pcq_AO_0   1pcq_FT_0   1pcq_BP_0
      1pcq_DR_0   1pcq_GU_0   1pcq_CQ_0   1pf9_AO_0   1pf9_BP_0   1pf9_ES_0   1pf9_FT_0   1pf9_CQ_0   1pf9_DR_0   1pf9_GU_0
      1svt_AO_0   1svt_DR_0   1svt_BP_0   1svt_ES_0   1svt_FT_0   1svt_CQ_0   1svt_GU_0   1sx4_AO_0   1sx4_CQ_0   1sx4_GU_0
      1sx4_DR_0   1sx4_BP_0   1sx4_ES_0   1sx4_FT_0   1we3_AO_1   1we3_CQ_1   1we3_FT_1   1wf4_ao_1   1wf4_bp_1   1wf4_dr_1
      1we3_DR_1   1wf4_gu_1   1wf4_ft_1   1wf4_cq_1   1we3_BP_1   1we3_GU_1   1wf4_es_1   1we3_ES_1   1mnf_AO_0   1mnf_DR_0
      1mnf_LZ_0   1mnf_BP_0   1mnf_GU_0   1mnf_CQ_0   1mnf_ES_0   1mnf_JX_0   1mnf_M1_0   1mnf_N2_0   1mnf_HV_0   1mnf_IW_0
      1mnf_FT_0   1mnf_KY_0
Peptides
      1mnf-O

PartnerDomains
      Cpn10 (1pcq_ES_0,1we3_DR_1,1we3_BP_1,1wf4_es_1)

Dist Members Intf   Alignment
      1pcq_ES_0     A     G     G     I     V     L     T      G    S     A
      1we3_AO_1                       G     I     V     L      P          A
      1wf4_ao_1                       G     I     V     L      P
      1wf4_bp_1                 G     G     I     V     L      P
      1we3_DR_1     T           G     G     I     V     L      P          A
      1we3_BP_1                 K     G     I     V     L      P          A
      1wf4_es_1     T           G     G     I     V     L      P          A
      1mnf_AO_0                       W     F     L     H

Dist Members ResidueID Alignment
      1pcq_ES_0   22    23    24      25    26    27    28     29   30    31
      1we3_AO_1                       29    30    31    32     33         36
      1wf4_ao_1                       29    30    31    32     33
      1wf4_bp_1               28      29    30    31    32     33
      1we3_DR_1   26          28      29    30    31    32     33         36
      1we3_BP_1               27      28    30    31    32     33         36
      1wf4_es_1   26          28      29    30    31    32     33         36
      1mnf_AO_0                       607   609   610   611

Alignment Occupancy       0.375 0.125 0.625 1     1     1      1    0.875 0.125 0.625
Gap in betw Columns       0     0,1   0     0     0     1,2

SLIM   RegEx        [GK][GWI].{0,1}[IFV][VL][LHT][PG].{1,2}A
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 23.5953798494148
SLIM   I=181997 Im=3836 Id=436 Idm=21
SLIM   PSSM p-value 0.000289809926337792

PSSM Listing
Pos 0 G(5.306) K(2.924) T(0.394) R(-0.00) S(-0.47) A(-0.60) V(-0.68) E(-0.89) Q(-0.89) D(-1.47) N(-1.64) P(-2.17)
H(-2.17) W(-2.60) M(-2.64) Y(-3.17) C(-3.47) F(-3.47) L(-3.64) I(-4.17)
Gap (0)
Pos 1 W(8.920) G(5.712) I(1.923) T(0.723) V(0.091) Y(0.006) L(-0.04) A(-0.22) S(-0.25) F(-0.68) M(-0.86) D(-1.25)
Q(-2.08) H(-2.08) E(-2.17) R(-2.17) K(-2.17) P(-2.20) N(-2.20) C(-2.30)
Gap (0,1)
Pos 2 F(3.936) I(3.774) V(2.187) L(1.792) Y(1.041) M(0.917) A(-0.87) W(-0.95) C(-1.08) S(-2) T(-2) H(-2.41) E(-2.80)
Q(-2.80) K(-2.80) P(-2.87) N(-3) D(-3) R(-3) G(-3.64)
Gap (0)
Pos 3 V(3.827) I(2.827) L(2.752) M(1.357) A(-0.17) F(-0.64) C(-1) Y(-1) S(-2)   T(-2) Q(-2) K(-2) P(-2.17) E(-2.17)
R(-2.64) W(-2.64) N(-3) H(-3) G(-3.17) D(-3.17)
Gap (0)
Pos 4 H(5.920) L(3.712) V(2.714) T(1.953) M(1.723) I(1.716) Y(0.195) F(-0.20)   D(-0.36) N(-0.68) S(-0.71) P(-0.93)
G(-0.99) Q(-1.04) A(-1.08) C(-1.11) E(-1.24) R(-1.30) K(-1.30) W(-2.08)
Gap (0)
Pos 5 P(6.712) G(3.922) T(0.866) S(-0.91) A(-0.91) D(-1.13) N(-1.22) E(-1.22)   Q(-1.22) K(-1.22) V(-1.48) H(-2.13)
R(-2.13) M(-2.22) C(-3.13) Y(-3.13) I(-3.22) L(-3.22) W(-3.48) F(-3.91)
Gap (1,2)
Pos 6 A(3.529) S(0.529) C(-0.47) G(-0.47) T(-1.47) P(-1.47) N(-1.47) E(-1.47)   Q(-1.47) R(-1.47) K(-1.47) M(-1.47)
I(-1.47) L(-1.47) D(-2.47) H(-2.47) V(-2.47) F(-2.47) Y(-2.47) W(-3.47)
//

===============================
 SLIM 75
===============================
ID           Cpn60_TCP1.clust.0.3.4
Center             1we3_FT_1
AvSimToCtr 0.538
AvRMSDToCtr 0.803 A
Size         13
NumDistinct 4
FracDDI            0.75
FracPeptides       0
FracIntra    0
Species            THERMUS THERMOPHILUS (4)
Conservation       1

Members
      1we3_AO_1 1we3_CQ_1 1wf4_ao_1 1wf4_bp_1 1wf4_dr_1 1we3_DR_1 1wf4_gu_1 1wf4_ft_1 1wf4_cq_1 1we3_BP_1
      1we3_GU_1 1wf4_es_1 1we3_ES_1

Peptides

PartnerDomains
      Cpn10 (1we3_FT_1,1wf4_ft_1,1wf4_es_1)

Dist Members Intf   Alignment
      1we3_FT_1     K     T     K   G         G   I   V     L     P     A       E
      1wf4_ao_1           T     K   G         G   I   V     L     P     A       E
      1wf4_ft_1     K     T     K   G                 V     L
      1wf4_es_1     K     T     K   G         G   I   V     L     P

Dist Members ResidueID Alignment
       1we3_FT_1   25    26     27   28    29   30     31     32   33   36     38
       1wf4_ao_1         26     27   28    29   30     31     32   33   36     38
       1wf4_ft_1   25    26     27   28                31     32
       1wf4_es_1   25    26     27   28    29   30     31     32   33

Alignment Occupancy      0.75   1    1     1    0.75   0.75   1    1    0.75   0.5   0.5
Gap in betw Columns      0      0    0     0    0      0      0    0    2      1

SLIM   RegEx        KTKGGIVLP..A.E
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 18.462977349073
SLIM   I=181997 Im=4983 Id=436 Idm=25
SLIM   PSSM p-value 0.000292236705646705

PSSM Listing
Pos 0 K(4.712) R(1.712) E(0.712) Q(0.712) S(-0.28) T(-0.28) N(-0.28) P(-1.28) A(-1.28) D(-1.28) H(-1.28) M(-1.28)
G(-2.28) L(-2.28) Y(-2.28) C(-3.28) I(-3.28) V(-3.28) F(-3.28) W(-3.28)
Gap (0)
Pos 1 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 2 K(5) R(2) E(1) Q(1) S(0) T(0) N(0) P(-1) A(-1) D(-1) H(-1) M(-1) G(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 3 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 4 G(5.712) T(0.712) S(-0.28) A(-0.28) V(-0.28) D(-1.28) P(-2.28) N(-2.28) E(-2.28) Q(-2.28) H(-2.28) R(-2.28)
K(-2.28) W(-2.28) C(-3.28) M(-3.28) F(-3.28) Y(-3.28) I(-4.28) L(-4.28)
Gap (0)
Pos 5 I(3.712) L(1.712) M(0.712) V(0.712) F(-0.28) C(-1.28) A(-1.28) Y(-1.28) S(-2.28) T(-2.28) P(-3.28) N(-3.28)
D(-3.28) E(-3.28) Q(-3.28) H(-3.28) R(-3.28) K(-3.28) W(-3.28) G(-4.28)
Gap (0)
Pos 6 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (0)
Pos 7 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 8 P(6.712) T(0.712) S(-1.28) A(-1.28) N(-1.28) D(-1.28) E(-1.28) Q(-1.28) K(-1.28) G(-2.28) H(-2.28) R(-2.28)
M(-2.28) V(-2.28) C(-3.28) I(-3.28) L(-3.28) Y(-3.28) F(-4.28) W(-4.28)
Gap (2)
Pos 9 A(3.306) S(0.306) C(-0.69) G(-0.69) T(-1.69) P(-1.69) N(-1.69) E(-1.69) Q(-1.69) R(-1.69) K(-1.69) M(-1.69)
I(-1.69) L(-1.69) D(-2.69) H(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
Gap (1)
Pos 10 E(4.306) D(1.306) Q(1.306) K(0.306) S(-0.69) T(-0.69) N(-0.69) H(-0.69) R(-0.69) P(-1.69) A(-1.69) G(-2.69)
M(-2.69) Y(-2.69) I(-3.69) L(-3.69) V(-3.69) F(-3.69) W(-3.69) C(-4.69)
//

===============================
 SLIM 76
===============================
ID           Cyclin_N.clust.0.2.3
Center             1ol2_BE_0
AvSimToCtr 0.478
AvRMSDToCtr 0.421 A
Size         13
NumDistinct 6
FracDDI            0
FracPeptides       1
FracIntra    0
Species            NONE
Conservation       UNDEFINED

Members
      1h24_BE_0 1h26_BE_0 1h25_BE_0 1jsu_BC_0 1okv_BE_0 2cch_BE_0 2cch_DF_0 2cci_BF_0 1okv_DF_0 1okw_DF_0
      2cci_DI_0 2c5v_BF_0 2c5v_DH_0

Peptides
      1ol2-E 1h24-E 1okv-E 2cch-E 2cci-F 2c5v-F

PartnerDomains

Dist Members Intf   Alignment
      1ol2_BE_0     R     R     L   N
      1h24_BE_0     R     R     L   D
      1okv_BE_0     R     R     L   I
      2cch_BE_0     R     R     L   V
      2cci_BF_0     R     R     L   V
      2c5v_BF_0     R     S     L   I

Dist Members ResidueID Alignment
      1ol2_BE_0   500   501   502   503
      1h24_BE_0   90    91    92    93
      1okv_BE_0   30    31    32    33
      2cch_BE_0   6     7     8     9
      2cci_BF_0   90    91    92    93
      2c5v_BF_0   504   505   506   507

Alignment Occupancy       1     1   1     1
Gap in betw Columns       0       0       0

SLIM   RegEx        R[RS]L[IVDN]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 16.0336201652464
SLIM   I=181997 Im=6528 Id=1441 Idm=35
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 1 R(4.818) S(2.241) K(1.844) Q(0.888) N(0.251) E(0) H(-0.11) T(-0.27) A(-0.27) M(-1) G(-1.27) D(-1.27) P(-1.74)
L(-2) Y(-2) C(-2.27) I(-2.74) V(-2.74) F(-2.74) W(-3)
Gap (0)
Pos 2 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 3 N(4.215) D(4.215) I(3.215) V(2.950) L(1.218) M(0.611) E(0.378) S(-0.34) T(-0.34) A(-0.69) F(-0.74) Q(-0.92)
K(-1.23) Y(-1.28) C(-1.33) G(-1.38) R(-1.50) H(-1.85) P(-1.92) W(-3.23)
//

===============================
 SLIM 77
===============================
ID           Cytochrom_B_N.clust.0.15.0
Center             1kb9_CE_0
AvSimToCtr 0.610
AvRMSDToCtr 0.597 A
Size         44
NumDistinct 11
FracDDI            1
FracPeptides       0
FracIntra    0
Species            BOS TAURUS (5), GALLUS GALLUS (2), MASTIGOCLADUS LAMINOSUS (1), RHODOBACTER SPHAEROIDES (1),
SACCHAROMYCES CEREVISIAE (1)
Conservation       0.5

Members
      1be3_CE_1   1bgy_CE_1   1bgy_OQ_1   1l0l_CE_1   1pp9_CE_0   1pp9_PR_1   1ppj_CE_0   1ppj_PR_0   2a06_CE_0   2a06_PR_1
      1sqp_CE_1   1sqb_CE_1   1sqq_CE_1   1sqx_CE_1   1l0n_CE_1   1ntz_CE_1   1ntm_CE_1   1sqv_CE_1   1ntk_CE_1   3h1j_CE_0
      3h1j_PR_0   1ezv_CE_0   2ibz_CE_0   1p84_CE_0   3cx5_CE_0   3cx5_NP_0   3cxh_CE_0   3cxh_NP_0   1kyo_CE_0   1kyo_NP_0
      2qjp_AC_0   2qjp_GI_0   2qjp_DF_0   2qjp_JL_0   2qjy_AC_0   2qjy_MO_0   2qjy_DF_0   2qjy_PR_0   2qjy_GI_0   2qjy_JL_0
      1vf5_AD_0   2e74_AD_0   2zt9_AD_0   1vf5_NQ_0
Peptides

PartnerDomains
      UCR_TM (1kb9_CE_0,1be3_CE_1,1bgy_CE_1,1pp9_CE_0,1l0n_CE_1,1ntm_CE_1,3h1j_CE_0,3h1j_PR_0)
      CytB6-F_Fe-S (1vf5_AD_0,2zt9_AD_0)
      CcmE (1vf5_AD_0)
      UCR_Fe-S_N (2qjp_AC_0)

Dist Members Intf   Alignment
      1kb9_CE_0     E     T     F     I     S     S     M     T      A    T     A     D
      1be3_CE_1           Q     F           S     S     M            A    S     A     D
      1bgy_CE_1           Q     F     V     S     S     M     S      A    S     A
      1pp9_CE_0           Q     F     V     S     S     M     S      A    S     A     D
      1l0n_CE_1           Q     F     V     S     S     M     S                       A
      1ntm_CE_1           Q     F     V     S     S     M     S           S           A
      3h1j_CE_0                 F           S     S     L     S      A    S     A     D
      3h1j_PR_0           Q     F           S     S     L     S      A    S     A     D
      2qjp_AC_0           P     L           N     Q     M     N      P    S     A     D
      1vf5_AD_0     Y     P     L           K     Y     F     I           P
      2zt9_AD_0     Y     P     V           N     Y     F     I           P

Dist Members ResidueID Alignment
      1kb9_CE_0   76    77    78      79    80    81    82    83     84   85    86    87
      1be3_CE_1         57    58            60    61    62           64   65    66    67
      1bgy_CE_1         57    58      59    60    61    62    63     64   65    66
      1pp9_CE_0         57    58      59    60    61    62    63     64   65    66    67
      1l0n_CE_1         57    58      59    60    61    62    63                      66
      1ntm_CE_1         57    58      59    60    61    62    63          65          66
      3h1j_CE_0               58            60    61    62    63     64   65    66    67
      3h1j_PR_0         57    58            60    61    62    63     64   65    66    67
      2qjp_AC_0         33    34            36    37    38    39     40   41    42    43
      1vf5_AD_0   36    37    38            40    41    42    43          45
      2zt9_AD_0   36    37    38            40    41    42    43          45

Alignment Occupancy       0.272 0.909 1     0.454 1     1     1      0.909 0.636 0.909 0.636 0.727
Gap in betw Columns       0     1     0     0     0     0     0      0     0

SLIM   RegEx        [QPT][FLV].[SNK][SYQ][MFL][SITN][AP][SPT]A[DA]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 23.193754892018
SLIM   I=181997 Im=8752 Id=14 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 P(5.702) Q(4.396) T(1.832) E(1.440) K(0.515) R(0.440) S(-0.11) D(-0.11)   N(-0.30) H(-0.39) M(-0.48) G(-1.02)
A(-1.09) Y(-1.48) V(-2.09) L(-2.30) W(-2.48) C(-2.60) I(-2.93) F(-3.11)
Gap (0)
Pos 1 F(5.682) Y(2.688) L(2.388) V(2.184) I(1.360) M(0.840) W(0.696) H(-1.26)   A(-1.36) C(-1.61) S(-2) T(-2) Q(-2.61)
K(-2.61) R(-2.72) E(-2.85) N(-3) G(-3.12) D(-3.12) P(-3.36)
Gap (1)
Pos 2 N(4.323) S(3.696) K(2.667) T(0.810) A(0.710) D(0.227) E(0.145) Q(0.145)   R(0.114) G(-0.08) H(-1) P(-1.12) M(-
1.12) C(-1.26) Y(-2) L(-2.12) I(-2.18) V(-2.18) F(-2.18) W(-3.12)
Gap (0)
Pos 3 Y(5.295) S(3.684) Q(2.659) F(1.323) T(0.738) N(0.738) A(0.710) H(0.531)   E(0.353) W(0.330) K(-0.00) D(-0.18)
G(-0.28) R(-0.61) M(-0.85) P(-1.17) C(-1.21) L(-1.72) V(-1.72) I(-1.77)
Gap (0)
Pos 4 M(4.564) F(4.306) L(2.695) Y(1.374) V(1.336) I(1.180) W(-0.28) Q(-0.40)   C(-1.12) A(-1.12) S(-1.26) T(-1.26)
R(-1.31) K(-1.31) H(-1.81) N(-2.26) E(-2.26) P(-2.31) G(-3.12) D(-3.12)
Gap (0)
Pos 5 N(3.644) S(3.411) I(2.304) T(1.881) A(0.467) L(0.360) D(0.047) G(-0.12)   M(-0.30) E(-0.30) Q(-0.30) K(-0.30)
V(-0.53) P(-0.75) H(-1.09) R(-1.09) C(-1.18) F(-1.30) Y(-1.79) W(-3.16)
Gap (0)
Pos 6 P(4.604) A(3.394) S(0.416) G(-0.58) C(-0.59) T(-0.80) N(-1.45) E(-1.45)   Q(-1.45) K(-1.45) R(-1.54) M(-1.54)
I(-1.58) L(-1.58) D(-2.23) H(-2.45) V(-2.45) Y(-2.54) F(-2.58) W(-3.54)
Gap (0)
Pos 7 P(5.297) S(3.557) T(1.972) N(0.635) A(0.604) D(-0.05) G(-0.09) E(-0.23)   Q(-0.23) K(-0.23) H(-1.05) R(-1.23)
M(-1.23) C(-1.28) V(-2.09) I(-2.23) L(-2.23) Y(-2.23) F(-2.28) W(-3.23)
Gap (0)
Pos 8 A(3.548) S(0.548) C(-0.45) G(-0.45) T(-1.45) P(-1.45) N(-1.45) E(-1.45)   Q(-1.45) R(-1.45) K(-1.45) M(-1.45)
I(-1.45) L(-1.45) D(-2.45) H(-2.45) V(-2.45) F(-2.45) Y(-2.45) W(-3.45)
Gap (0)
Pos 9 D(5.393) A(2.302) E(1.410) T(0.437) N(0.437) S(0.038) Q(-0.49) G(-0.96)   P(-1.31) K(-1.31) H(-1.49) C(-1.56)
R(-1.96) M(-2.36) I(-2.36) L(-2.56) V(-2.96) F(-2.96) Y(-2.96) W(-3.96)
//

===============================
 SLIM 78
===============================
ID           Cytochrom_C.clust.0.15.8
Center             1dii_DB_0
AvSimToCtr 0.571
AvRMSDToCtr 1.715 A
Size         8
NumDistinct 4
FracDDI            0
FracPeptides       0
FracIntra    0
Species            HIZIKIA FUSIFORMIS (3), PSEUDOMONAS PUTIDA (1)
Conservation       0.75
Members
      1dii_CA_0 1diq_CA_0 1diq_DB_0 1wve_CA_0 1wve_DB_0 2zbo_AE_0 2zbo_CA_0 2zbo_EC_0

Peptides

PartnerDomains

Dist Members Intf Alignment
      1dii_DB_0   V     P        Y      K      M      T      T      R      F      D      K      K      T      D      A      I      A
      H     P     N     L        Q      F      G      Y      N      G      G      T
      2zbo_AE_0
                  I     N        A      P             A             R
      2zbo_CA_0
                  I     N        A      P             A                    R
      2zbo_EC_0                                                                                                             N
                        A               P             A

Dist Members ResidueID Alignment
      1dii_DB_0   42    43    44        46     48     63     89     91     93     109    111    112    133    139    157    158
      159   291   376   377   378       379    381    382    384    385    389    390    446
      2zbo_AE_0
                  49    80    81        83            84            88
      2zbo_CA_0
                  49    80    81        83            84                   88
      2zbo_EC_0                                                                                                             80
                        81              83            84

Alignment Occupancy       0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25
      0.5   0.25 0.25     0.25   0.75   1      0.75   1      0.25   1      0.25   0.5    0.5    0.25
Gap in betw Columns       218    0,30   0      1      0,2    3,4    0

SLIM   RegEx        [NAL][AQ].[PF].{0,2}[AY].{3,4}[RG][RG]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 22.2990649246755
SLIM   I=181997 Im=6010 Id=37 Idm=2
SLIM   PSSM p-value 0.224241481464733

PSSM Listing
Pos 0 N(5.307) A(2.625) L(2.622) V(1.625) S(0.728) M(0.696) I(0.675) D(0.334) G(-0.28) T(-0.46) Q(-0.46) R(-0.46)
K(-0.46) E(-0.50) C(-1.00) F(-1.17) H(-1.46) Y(-1.64) P(-1.75) W(-2.89)
Gap (0)
Pos 1 Q(3.618) A(3.310) E(0.708) S(0.475) R(-0.14) K(-0.14) G(-0.62) C(-0.66) T(-0.83) N(-0.83) M(-0.83) D(-1.14)
H(-1.14) P(-1.28) L(-1.52) I(-1.62) Y(-1.83) V(-2.28) F(-2.52) W(-2.83)
Gap (1)
Pos 2 P(6.712) F(4.613) Y(1.621) T(0.728) W(-0.36) M(-1.04) S(-1.17) A(-1.17)               N(-1.24) D(-1.24) E(-1.24) Q(-1.24)
K(-1.24) I(-1.24) L(-1.24) H(-1.64) V(-1.64) G(-2.17) R(-2.17) C(-2.64)
Gap (0,2)
Pos 3 Y(5.614) A(3.713) F(1.633) S(0.728) H(0.667) W(0.633) C(-0.24) G(-0.27)               Q(-1) M(-1) I(-1) L(-1) T(-1.17) N(-
1.17) E(-1.17) R(-1.17) K(-1.17) P(-1.24) V(-1.64) D(-2.17)
Gap (3,4)
Pos 4 G(4.614) R(3.614) K(0.631) T(-0.25) Q(-0.33) S(-1.07) A(-1.07) N(-1.25)               E(-1.25) H(-1.25) V(-1.33) D(-2.07)
M(-2.25) P(-2.69) Y(-3.07) W(-3.07) L(-3.25) C(-3.69) F(-3.69) I(-4.07)
Gap (0)
Pos 5 G(4.614) R(3.614) K(0.631) T(-0.25) Q(-0.33) S(-1.07) A(-1.07) N(-1.25)               E(-1.25) H(-1.25) V(-1.33) D(-2.07)
M(-2.25) P(-2.69) Y(-3.07) W(-3.07) L(-3.25) C(-3.69) F(-3.69) I(-4.07)
//

===============================
 SLIM 79
===============================
ID           Cytochrom_C1.clust.0.15.0
Center             1kb9_DE_0
AvSimToCtr 0.469
AvRMSDToCtr 0.916 A
Size         40
NumDistinct 6
FracDDI            1
FracPeptides       0
FracIntra    0
Species            BOS TAURUS (3), RHODOBACTER SPHAEROIDES (1), SACCHAROMYCES CEREVISIAE (1), GALLUS GALLUS (1)
Conservation       0.5

Members
      1be3_DE_0   1bgy_DE_0   1bgy_PQ_0   1l0l_DE_0   1l0n_DE_0   1ntk_DE_0   1ntm_DE_0   1ntz_DE_0   1sqv_DE_0   1sqx_DE_0
      1sqq_DE_0   1sqb_DE_0   1sqp_DE_0   1pp9_DE_0   1pp9_QR_0   2a06_QR_0   1ppj_DE_0   2a06_DE_0   1ppj_QR_0   3h1j_DE_0
      3h1j_QR_0   1ezv_DE_0   2ibz_DE_0   1kyo_OP_0   1p84_DE_0   1kyo_DE_0   3cx5_DE_0   3cx5_OP_0   3cxh_OP_0   3cxh_DE_0
      2qjp_BC_0   2qjp_HI_0   2qjp_EF_0   2qjp_KL_0   2qjy_BC_0   2qjy_EF_0   2qjy_KL_0   2qjy_NO_0   2qjy_QR_0   2qjy_HI_0

Peptides

PartnerDomains
      UCR_TM (1kb9_DE_0,1be3_DE_0,1l0n_DE_0,1ntk_DE_0,3h1j_DE_0)
      UCR_Fe-S_N (2qjp_BC_0)

Dist Members Intf Alignment
      1kb9_DE_0   G     Y         A       M     V       A     M       L       S     A       D     A
      1be3_DE_0                   S       V     T       T     T       G       V     A       D     M
      1l0n_DE_0                   S       V     T       T     T       G       V             A     L
      1ntk_DE_0                   S       V     T       T     T       G       V     A       D     A
        3h1j_DE_0               S     V     T     T     A      A    T    A     D
        2qjp_BC_0         R     R     L     Y     A     T      A    G    A     D

Dist Members ResidueID Alignment
      1kb9_DE_0   52    55    56      59    60    62    63     66   67   86    87    90
      1be3_DE_0               36      39    40    42    43     46   47   66    67    71
      1l0n_DE_0               36      39    40    42    43     46   47         66    69
      1ntk_DE_0               36      39    40    42    43     46   47   66    67    70
      3h1j_DE_0               36      39    40    42    43     46   47   66    67
      2qjp_BC_0         11    12      15    16    18    19     22   23   42    43

Alignment Occupancy       0.166 0.333 1     1     1     1      1    1    1     0.833 1    0.666
Gap in betw Columns       2     0     1     0     2     0      18   0    2,3

SLIM   RegEx        [SAR]..[VML][TYV].[TA][TAM]..[GAL][VSTG]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 20.0094354980443
SLIM   I=181997 Im=6111 Id=16 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 S(3.608) R(3.220) A(2.395) N(0.713) K(0.672) T(0.660) Q(0.166) E(-0.11) G(-0.15) D(-0.33) H(-0.83) C(-0.86)
M(-1) P(-1.11) L(-1.74) I(-1.83) Y(-2) V(-2.11) F(-2.11) W(-3)
Gap (2)
Pos 1 V(3.683) M(3.324) I(2.713) L(2.496) A(-0.23) F(-0.54) C(-1) Y(-1) Q(-1.27) S(-1.74) T(-1.74) K(-1.74) P(-2.11)
E(-2.11) R(-2.14) W(-2.14) N(-2.74) H(-2.74) G(-3.11) D(-3.11)
Gap (0)
Pos 2 Y(5.209) T(3.595) V(2.224) I(1.252) F(1.252) H(0.645) S(0.619) P(0.611) G(0.603) D(0.603) W(0.241) M(-0.27)
Q(-0.28) E(-0.33) K(-0.33) N(-0.36) L(-0.50) A(-0.83) C(-1.11) R(-1.28)
Gap (1)
Pos 3 T(3.597) A(2.914) S(1) G(0.763) P(0.660) D(0.619) N(-0.23) E(-0.23) Q(-0.23) K(-0.23) H(-0.33) C(-0.54) R(-1)
M(-1) I(-1.54) L(-1.54) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 4 T(3.597) M(3.220) A(2.241) S(0.844) G(0.686) P(0.639) D(0.611) L(0.324) Q(-0.11) K(-0.23) N(-0.28) E(-0.28)
H(-0.33) I(-0.50) C(-0.74) R(-1) F(-1.27) Y(-1.74) V(-2) W(-2.27)
Gap (2)
Pos 5 G(5.308) A(2.931) L(2.222) V(1.359) T(0.408) S(0.356) M(0.321) I(0.309) C(-0.86) F(-1.44) D(-1.46) Q(-1.54)
R(-1.54) K(-1.54) P(-1.61) N(-1.61) E(-1.61) Y(-2.03) H(-2.11) W(-2.23)
Gap (0)
Pos 6 G(4.217) V(3.314) I(2.311) T(2.309) S(2.281) M(0.398) L(0.341) A(0.166) D(-0.34) N(-0.40) P(-0.50) E(-0.85)
Q(-0.85) K(-0.85) C(-1.15) H(-1.28) F(-1.43) Y(-1.43) R(-1.77) W(-2.74)
//

===============================
 SLIM 80
===============================
ID           Cytochrom_C1.clust.0.15.4
Center             1ppj_DQ_0
AvSimToCtr 0.574
AvRMSDToCtr 0.898 A
Size         13
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            SACCHAROMYCES CEREVISIAE (2), BOS TAURUS (1), GALLUS GALLUS (1)
Conservation       0.5

Members
      1kyo_DO_0 3cx5_DO_0 3cx5_OD_0 3cxh_DO_0 3cxh_OD_0 1kyo_OD_0 1pp9_DQ_0 1pp9_QD_0 1ppj_QD_0 2a06_DQ_0
      2a06_QD_0 3h1j_DQ_0 3h1j_QD_0

Peptides

PartnerDomains
      Cytochrom_C1 (1ppj_DQ_0,1kyo_DO_0,3cx5_DO_0,3h1j_DQ_0)
      Dehyd-heme_bind (1kyo_DO_0)

Dist Members Intf   Alignment
      1ppj_DQ_0     P     N     E    D      G     E     P      N     E     A     A
      1kyo_DO_0     P     D     E    Q      G           P      N     Q     A     A
      3cx5_DO_0     P     D     E    Q      G     N     P      N     Q     A     A
      3h1j_DQ_0     P     D     E    N      G           P      N     E     A     A

Dist Members ResidueID Alignment
      1ppj_DQ_0   74    75    76     77     78    79    96     97    99    100   103
      1kyo_DO_0   138   139   140    141    142         160    161   163   164   167
      3cx5_DO_0   138   139   140    141    142   143   160    161   163   164   167
      3h1j_DQ_0   74    75    76     77     78          96     97    99    100   103

Alignment Occupancy       1     1    1      1     1     0.5    1     1     1     1     1
Gap in betw Columns       0     0    0      0     0     16     0     1     0     2

SLIM   RegEx        P[DN]E[QND]G[NE]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 20.6443108833802
SLIM   I=181997 Im=10346 Id=16 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3) F(-
4) W(-4)
Gap (0)
Pos 1 D(5.714) N(4.633) E(1.756) T(0.827) S(0.357) Q(0) G(-0.64) K(-0.64) H(-1) R(-1.04) P(-1.17) A(-2) M(-2.64)
Y(-2.64) C(-3) I(-3) V(-3) F(-3) L(-3.64) W(-4)
Gap (0)
Pos 2 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3) L(-3) V(-3) F(-3) W(-3) C(-4)
Gap (0)
Pos 3 N(4.625) D(4.625) Q(4.313) E(1.756) K(0.531) R(0.496) S(0.357) T(0.357) H(-0.37) M(-0.60) G(-0.89) P(-1.17)
A(-1.37) Y(-1.46) V(-2.37) L(-2.46) W(-2.56) C(-3) I(-3) F(-3)
Gap (0)
Pos 4 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 5 N(4.616) E(3.620) D(0.926) Q(0.740) S(-0.07) K(-0.07) T(-0.69) R(-0.69) H(-1.07) G(-1.25) P(-2.07) A(-2.07)
M(-2.69) Y(-2.69) I(-3.69) L(-3.69) V(-3.69) F(-3.69) C(-4.07) W(-4.07)
//

===============================
 SLIM 81
===============================
ID           DNA_pol3_beta.clust.0.2.0
Center             1ok7_AB_0
AvSimToCtr 0.624
AvRMSDToCtr 0.715 A
Size         21
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            STREPTOCOCCUS PNEUMONIAE TIGR4 (2), ESCHERICHIA COLI (1), STREPTOCOCCUS PYOGENES (1)
Conservation       0.5

Members
      1mmi_AB_0 2pol_AB_0 1mmi_BA_0 3bep_BA_0 3d1g_AB_0 3d1e_BA_0 1ok7_BA_0 1unn_AB_0 1unn_BA_0 3d1g_BA_0
      3bep_AB_0 3d1e_AB_0 3d1f_AB_0 3d1f_BA_0 2pol_BA_0 2avt_AB_0 2awa_AB_0 2awa_BA_0 2awa_CD_0 2awa_DC_0
      2avt_BA_0

Peptides

PartnerDomains
      DNA_pol3_beta_3 (1ok7_AB_0,2avt_AB_0,2awa_AB_0,2awa_DC_0)

Dist Members Intf Alignment
        1ok7_AB_0   Q     R     A     I      L     E     Q      N      E      Q     E      E     A     E     E     I     L
        D
        2avt_AB_0         R           L      I                         E            G      K     V     N     E     D
        D
        2awa_AB_0         R           L      L                         E            G      K     V     N     E     E
        D
        2awa_DC_0   Q     R           L      L                         E            G      K     V     N     E     E
        D

Dist Members ResidueID Alignment
      1ok7_AB_0   265   269   270     272    273   276   289    296    298    299   300    301   302   303   304   305
      306   307
      2avt_AB_0         277           280    281                       307          309    310   311   312   313   314
      316
      2awa_AB_0         277           280    281                       307          309    310   311   312   313   314
      316
      2awa_DC_0   273   277           280    281                       307          309    310   311   312   313   314
      316

Alignment Occupancy       0.5   1     0.25   1     1     0.25   0.25   0.25   1     0.25   1     1     1     1     1     1
      0.25 1
Gap in betw Columns       3     2     0      24,25 1     0      0      0      0     0      1

SLIM   RegEx        E.[GE][KE][VA][NE]E[EDI].D
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 22.6977869464654
SLIM   I=181997 Im=19127 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3) L(-3) V(-3) F(-3) W(-3) C(-4)
Gap (1)
Pos 1 G(5.712) E(3.616) T(0.827) D(0.752) Q(0.667) S(0) A(-0.17) K(-0.24) V(-0.27) N(-1.04) H(-1.04) R(-1.04) P(-
1.64) W(-2.17) M(-2.64) Y(-2.64) F(-3) C(-3.17) I(-3.64) L(-3.64)
Gap (0)
Pos 2 K(4.718) E(3.667) R(1.756) Q(1.357) D(0.752) S(0) T(0) N(0) H(-0.64) P(-1) A(-1) M(-1.17) G(-2) Y(-2) L(-2.17)
I(-3) V(-3) F(-3) W(-3) C(-3.17)
Gap (0)
Pos 3 V(3.713) I(2.718) A(2.667) M(0.756) L(0.756) S(-0.24) C(-0.64) F(-1.17) Y(-1.17) G(-1.24) T(-1.64) P(-1.64)
E(-1.64) Q(-1.64) K(-1.64) N(-2.04) R(-2.04) D(-2.64) H(-2.64) W(-3)
Gap (0)
Pos 4 N(5.713) E(3.633) D(1.357) Q(0.954) S(0.827) K(0.357) T(0) R(0) G(-0.24) H(-0.64) P(-1.64) A(-1.64) M(-2) Y(-
2) I(-3) L(-3) V(-3) F(-3) C(-3.17) W(-3.64)
Gap (0)
Pos 5 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3) L(-3) V(-3) F(-3) W(-3) C(-4)
Gap (0)
Pos 6 D(4.649) E(4.331) I(2.616) Q(1.375) L(0.629) K(0.380) T(0.193) N(0.175) S(-0.24) M(-0.27) V(-0.33) H(-0.50)
R(-0.60) A(-1.17) P(-1.24) F(-1.24) Y(-1.75) G(-1.80) C(-2.17) W(-3.17)
Gap (1)
Pos 7 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
//

===============================
 SLIM 82
===============================
ID           DNA_pol3_beta_2.clust.0.2.1
Center             3d1f_BQ_1
AvSimToCtr 0.593
AvRMSDToCtr 0.529 A
Size         7
NumDistinct 4
FracDDI            0.25
FracPeptides       0.5
FracIntra    0
Species            ESCHERICHIA COLI (1)
Conservation       1

Members
      1jqj_AC_1 1jqj_BD_1 1jql_AB_1 3d1f_AP_1 1ok7_BC_1 1unn_AD_1 1unn_BC_1

Peptides
      3d1f-Q 1ok7-C

PartnerDomains
      DNA_pol3_delta (1jqj_AC_1)

Dist Members Intf   Alignment
      3d1f_BQ_1     Q     V     E   L      F
      1jqj_AC_1     A     M     S   L
      1ok7_BC_1     Q     L     V   L
      1unn_AD_1     Q     L     V   L

Dist Members ResidueID Alignment
      3d1f_BQ_1   4     5     6     7      9
      1jqj_AC_1   70    71    72    73
      1ok7_BC_1   11    12    13    14
      1unn_AD_1   346   347   348   349

Alignment Occupancy       1     1   1      1    0.25
Gap in betw Columns      0     0     0

SLIM   RegEx        [QA][LMV][VSE]L
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 14.7497428382884
SLIM   I=181997 Im=5862 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(4.713) A(2.633) E(1.728) R(0.756) K(0.756) S(0.357) T(-0.17) N(-0.17) M(-0.17) D(-0.24) H(-0.24) P(-1) G(-
1.04) Y(-1.17) C(-1.24) L(-1.64) V(-2) I(-2.04) W(-2.17) F(-2.64)
Gap (0)
Pos 1 M(3.725) L(3.395) V(3.166) I(2.240) F(-0.17) A(-0.64) C(-1) Y(-1) Q(-1.04) S(-1.64) T(-1.64) K(-1.64) R(-1.75)
W(-1.75) P(-2.37) E(-2.37) N(-2.64) H(-2.64) G(-3.37) D(-3.37)
Gap (0)
Pos 2 E(3.622) V(3.308) S(2.636) I(2.311) Q(0.772) D(0.752) M(0.395) L(0.340) A(0.240) T(-0.00) K(-0.00) N(-0.04)
H(-1.00) R(-1.00) G(-1.17) C(-1.27) P(-1.37) Y(-1.37) F(-1.46) W(-3)
Gap (0)
Pos 3 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
//

===============================
 SLIM 83
===============================
ID           DNA_pol3_beta_3.clust.0.2.1
Center             1ok7_BA_2
AvSimToCtr 0.620
AvRMSDToCtr 0.696 A
Size         21
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            STREPTOCOCCUS PNEUMONIAE TIGR4 (2), ESCHERICHIA COLI (1), STREPTOCOCCUS PYOGENES (1)
Conservation       0.5

Members
      1mmi_AB_2 1mmi_BA_2 2pol_BA_2 2pol_AB_2 1ok7_AB_2 3bep_AB_2 3d1e_AB_2 3d1g_AB_2 3d1g_BA_2 3bep_BA_2
      3d1e_BA_2 1unn_AB_2 1unn_BA_2 3d1f_AB_2 3d1f_BA_2 2avt_AB_2 2avt_BA_2 2awa_AB_2 2awa_BA_2 2awa_CD_2
      2awa_DC_2

Peptides

PartnerDomains
        DNA_pol3_beta (1ok7_BA_2,2avt_AB_2,2awa_AB_2,2awa_CD_2)

Dist Members Intf Alignment
      1ok7_BA_2   P     K        D      I    G    L     P     R      S     R     F     S     L     S
      2avt_AB_2         F        N      I    S    L           K      S     E     I     T     L     K
      2awa_AB_2                  N      V    S    L           K      S     E     I     T     L     K
      2awa_CD_2         F        N      V    S    L           K      S     E     I     T     L     K

Dist Members ResidueID Alignment
      1ok7_BA_2   71    74    77        78   81   82    83    103    104   105   106   107   108   109
      2avt_AB_2         81    84        85   88   89          110    111   112   113   114   115   116
      2awa_AB_2               84        85   88   89          110    111   112   113   114   115   116
      2awa_CD_2         81    84        85   88   89          110    111   112   113   114   115   116

Alignment Occupancy       0.25   0.75   1    1    1     1     0.25   1     1     1     1     1     1     1
Gap in betw Columns       2      0      2    0    20    0     0      0     0     0     0

SLIM   RegEx        [KR]S[ER][IF][TS]L[KS]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 19.2961638963484
SLIM   I=181997 Im=6212 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 K(4.728) R(3.752) Q(1) E(0.827) N(0) S(-0.17) T(-0.17) H(-0.64) A(-1) M(-1) P(-1.17) D(-1.17) G(-2) L(-2) Y(-
2) C(-3) I(-3) V(-3) F(-3) W(-3)
Gap (0)
Pos 1 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 2 E(4.714) R(3.633) Q(1.827) D(1.718) K(1.357) N(0) H(0) S(-0.17) T(-0.17) A(-1) P(-1.17) M(-1.64) G(-2) Y(-2)
L(-2.64) I(-3) V(-3) F(-3) W(-3) C(-3.64)
Gap (0)
Pos 3 F(4.621) I(3.718) L(1.756) Y(1.667) M(0.827) V(0.756) W(-0.33) C(-1.17) A(-1.17) S(-2) T(-2) H(-2.04) N(-3)
D(-3) E(-3) Q(-3) R(-3) K(-3) P(-3.17) G(-3.64)
Gap (0)
Pos 4 T(3.728) S(2.752) G(0.827) D(0.827) P(0.756) N(0.357) E(0) Q(0) K(0) A(-0.04) H(-0.17) C(-1) R(-1) M(-1) I(-2)
L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 5 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 6 K(4.714) S(2.667) R(1.728) E(0.827) Q(0.827) T(0.357) N(0.357) A(-0.04) D(-0.64) P(-1) H(-1) M(-1) G(-1.04)
L(-2) Y(-2) C(-2.04) I(-2.64) V(-2.64) F(-2.64) W(-3)
//
===============================
 SLIM 84
===============================
ID           DNA_pol3_beta_3.clust.0.2.2
Center             1ok7_BC_2
AvSimToCtr 0.429
AvRMSDToCtr 0.850 A
Size         8
NumDistinct 6
FracDDI            0.166666666666667
FracPeptides       0.666666666666667
FracIntra    0
Species            ESCHERICHIA COLI (1)
Conservation       1

Members
      1jqj_AC_2 1jqj_BD_2 1jql_AB_2 1unn_AD_2 1unn_BC_2 3d1e_AP_2 3d1f_AP_2 3d1f_BQ_2

Peptides
      1ok7-C 3d1e-P 3d1f-P 3d1f-Q

PartnerDomains
      DNA_pol3_delta (1jqj_AC_2)

Dist Members Intf   Alignment
      1ok7_BC_2     R     Q     L     V     L     G    L
      1jqj_AC_2     Q     A     M     S     L
      1unn_AD_2           Q     L     V     L
      3d1e_AP_2     G     Q     L     G     L
      3d1f_AP_2     E     Q     V     E     L     E
      3d1f_BQ_2     E     Q     V     E     L     E    F

Dist Members ResidueID Alignment
      1ok7_BC_2   10    11    12      13    14    15   16
      1jqj_AC_2   69    70    71      72    73
      1unn_AD_2         346   347     348   349
      3d1e_AP_2   505   506   507     508   509
      3d1f_AP_2   3     4     5       6     7     8
      3d1f_BQ_2   3     4     5       6     7     8    9

Alignment Occupancy       0.833 1     1     1     1    0.5   0.333
Gap in betw Columns       0     0     0     0     0

SLIM RegEx          [EQRG][QA][LVM][EVSG]L[EG]
SLIM Coverage             0.666666666666667
SLIM PSSM Match Cutoff 19.3717321544357
SLIM I=181997 Im=6284 Id=0 Idm=0
SLIM PSSM p-value 1

PSSM Listing
Pos 0 G(4.209) E(3.929) Q(3.320) R(3.240) D(0.998) K(0.960) T(0.014) S(-0.31) N(-0.37) H(-0.37) A(-0.88) M(-1.26)
P(-1.47) V(-1.54) Y(-1.98) W(-2.65) L(-2.73) F(-3.18) I(-3.31) C(-3.47)
Gap (0)
Pos 1 Q(4.818) A(2.241) E(1.827) R(0.844) K(0.844) S(0.251) T(-0.11) N(-0.11) M(-0.11) D(-0.15) H(-0.15) P(-1) Y(-
1.11) G(-1.27) C(-1.56) L(-1.74) V(-2) W(-2.11) I(-2.27) F(-2.74)
Gap (0)
Pos 2 L(3.382) M(3.378) V(3.341) I(2.383) F(-0.23) A(-0.54) C(-1) Y(-1) Q(-1.27) S(-1.74) T(-1.74) K(-1.74) R(-1.92)
W(-1.92) P(-2.37) E(-2.37) N(-2.74) H(-2.74) G(-3.37) D(-3.37)
Gap (0)
Pos 3 G(4.211) E(3.906) V(2.912) S(2.266) I(1.907) D(0.996) Q(0.992) T(0.250) K(0.131) A(0.072) M(0.020) L(-0.05)
N(-0.19) H(-0.83) R(-0.83) P(-1.37) Y(-1.61) C(-1.61) F(-1.77) W(-2.74)
Gap (0)
Pos 4 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 5 G(4.208) E(3.901) D(0.925) Q(0.910) K(-0.07) T(-0.24) S(-0.69) N(-1.03) H(-1.03) R(-1.03) A(-1.24) V(-1.69)
P(-1.92) M(-2.92) Y(-2.92) W(-3.24) F(-3.69) I(-3.92) L(-3.92) C(-4.24)
//

===============================
 SLIM 85
===============================
ID           DPPIV_N.clust.0.15.0
Center             2g63_BA_0
AvSimToCtr 0.744
AvRMSDToCtr 0.342 A
Size         161
NumDistinct 6
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (4), RATTUS NORVEGICUS (1), SUS SCROFA (1)
Conservation       0.666666666666667

Members
      1j2e_AB_0   1wcy_AB_0   2hha_BA_0   2oph_BA_0   2qtb_BA_0   2qt9_BA_0   3c45_BA_0   2iiv_BA_0   3c43_BA_0   2fjp_BA_0
      1x70_BA_0   2p8s_BA_0   3d4l_BA_0   2qoe_BA_0   3hab_BA_0   3hac_BA_0   2iit_BA_0   1wcy_BA_0   2fjp_AB_0   2iiv_AB_0
      3c43_AB_0   2hha_AB_0   2oph_AB_0   3c45_AB_0   2qt9_AB_0   2qtb_AB_0   1x70_AB_0   3d4l_AB_0   2p8s_AB_0   2qoe_AB_0
      3hab_AB_0   3hac_AB_0   2iit_AB_0   2bgr_AB_0   2bgr_BA_0   1nu6_AB_0   3bjm_AB_0   3bjm_BA_0   1nu6_BA_0   2qjr_AB_0
      2qjr_BA_0   1j2e_BA_0   1r9m_AB_0   3ccb_AB_0   3ccb_CD_0   1r9m_BA_0   1r9m_DC_0   3ccb_BA_0   1r9m_CD_0   1r9n_AB_0
      1r9n_BA_0   3ccb_DC_0   3ccc_BA_0   1tk3_AB_0   1u8e_AB_0   1tk3_BA_0   1u8e_BA_0   2g63_CD_0   2g63_DC_0   2oag_CD_0
      2oag_DC_0   2i03_CD_0   2i03_DC_0   2oqi_CD_0   2oqi_DC_0   2i78_DC_0   2i78_CD_0   2g5t_AB_0   2g5t_BA_0   2g63_AB_0
      2oag_AB_0   2i03_AB_0   2oag_BA_0   2oqi_BA_0   2i03_BA_0   3eio_AB_0   3eio_BA_0   2ole_AB_0   2ole_BA_0   2ogz_AB_0
      2ogz_BA_0   2i78_AB_0   2i78_BA_0   2oqi_AB_0   2oqv_BA_0   2onc_AB_0   2onc_BA_0   2ajl_IJ_0   3f8s_AB_0   3f8s_BA_0
      1rwq_AB_0   1rwq_BA_0   3h0c_AB_0   3h0c_BA_0   1pfq_BA_0   1nu8_AB_0   2rgu_BA_0   1nu8_BA_0   2rgu_AB_0   2oqv_AB_0
      2ajl_JI_0   1n1m_AB_0   1tkr_AB_0   1n1m_BA_0   1tkr_BA_0   2g5p_AB_0   2g5p_BA_0   1pfq_AB_0   2jid_AB_0   2jid_BA_0
      3ccc_AB_0   3ccc_CD_0   3ccc_DC_0   1orv_AB_0   2ajc_AB_0   1orv_CD_0   2ajc_CD_0   1orv_BA_0   2ajc_BA_0   1orv_DC_0
      2ajc_DC_0   2aj8_AB_0   2aj8_BA_0   2aj8_DC_0   2aj8_CD_0   2buc_AB_0   2buc_BA_0   2buc_CD_0   2buc_DC_0   1orw_BA_0
      1orw_AB_0   2ajb_AB_0   2ajb_BA_0   2ajd_AB_0   2ajd_BA_0   2ajd_DC_0   1orw_CD_0   2ajb_CD_0   1orw_DC_0   2ajb_DC_0
      2bua_AB_0   2bua_BA_0   2bua_CD_0   2bua_DC_0   2ajd_CD_0   2bub_AB_0   2bub_BA_0   1z68_AB_0   1z68_BA_0   2gbc_AB_0
      2gbc_BA_0   2gbg_AB_0   2gbg_BA_0   2i3z_AB_0   2i3z_BA_0   2oae_AB_0   2oae_BA_0   1xfd_AB_0   1xfd_CD_0   1xfd_BA_0
      1xfd_DC_0

Peptides

PartnerDomains
      DPPIV_N (2g63_BA_0,1orv_AB_0,1z68_AB_0,1z68_BA_0,2gbc_AB_0,1xfd_AB_0)

Dist Members Intf   Alignment
      2g63_BA_0     P     L       I       E     Y       S     Q       Y       P     K       T     R       Y       P     K     A     G
      A     R       E     Y       T       M     F       Q     A       Q       K
      1orv_AB_0     P     L       I       E     Y       S     Q       Y       P     K       T     R       Y       P     K     A     G
      A     K       E     Y       T       M     F       Q     A       Q       K
      1z68_AB_0     P     V       I       A     Y       S     Q       Y       P             T             Y       P     K     A     G
      A                   Y                     F       Q     A       Q       K
      1z68_BA_0     P     V       I       A     Y       S     Q       Y       P             T             Y       P     K     A
      A             E     Y                     F       Q     A       Q       K
      2gbc_AB_0     P     L       I       E     Y       S     Q       Y       P     K       T     W       Y       P     K     A     G
      A     R       E     Y       T       M     F       Q     A       Q       K
      1xfd_AB_0     P     I       M       E                   I       Y       P             V             Y       P     K
      S             K     L                     F       Q     A       E       T

Dist Members ResidueID Alignment
      2g63_BA_0   234   235   236         237   238     239   247     248     249   250     251   253     256     257   258   259
      260   261   658   660   661         687   689     713   714     717     718   721
      1orv_AB_0   234   235   236         237   238     239   247     248     249   250     251   253     256     257   258   259
      260   261   658   660   661         687   689     713   714     717     718   721
      1z68_AB_0   232   233   234         235   236     237   243     244     245           247           252     253   254   255
      256   257               655                       707   708     711     712   715
      1z68_BA_0   232   233   234         235   236     237   243     244     245           247           252     253   254   255
      257         654   655                     707     708   711     712     715
      2gbc_AB_0   232   233   234         235   236     237   245     246     247   248     249   251     254     255   256   257
      258   259   659   661   662         688   690     714   715     718     719   722
      1xfd_AB_0   324   325   326         327                 335     336     337           339           344     345   346
      349         746   747                     797     798   801     802     805
Alignment Occupancy       1     1       1    1     0.833   0.833   1   1   1   0.5   1    0.5   1     1     1
      0.833 0.666 1       0.5   0.833   1    0.5   0.5     1       1   1   1   1
Gap in betw Columns       0     0       0    0     0       5,7     0   0   0   0     1    2     0     0     0     0
      0     396,399       1     0       25   1     23      0       2   0   2

SLIM   RegEx        [QI]YPK[TV].[RW]..YPKAG[AS]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 21.2324161925192
SLIM   I=181997 Im=4251 Id=23 Idm=1
SLIM   PSSM p-value 0.3194312350906

PSSM Listing
Pos 0 Q(4.817) I(2.212) E(1.819) R(0.821) K(0.821) L(0.295) M(0.251) S(-0.15) T(-0.15) N(-0.17) D(-0.17) H(-0.17)
V(-0.56) A(-1) Y(-1) P(-1.15) F(-1.56) W(-2.11) G(-2.15) C(-2.27)
Gap (0)
Pos 1 Y(7) F(3) H(2) W(2) Q(-1) M(-1) I(-1) L(-1) V(-1) C(-2) S(-2) T(-2) A(-2) N(-2) E(-2) R(-2) K(-2) P(-3) G(-3)
D(-3)
Gap (0)
Pos 2 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3) F(-
4) W(-4)
Gap (0)
Pos 3 K(4.306) R(1.306) E(0.306) Q(0.306) S(-0.69) T(-0.69) N(-0.69) P(-1.69) A(-1.69) D(-1.69) H(-1.69) M(-1.69)
G(-2.69) L(-2.69) Y(-2.69) C(-3.69) I(-3.69) V(-3.69) F(-3.69) W(-3.69)
Gap (0)
Pos 4 T(3.818) V(2.220) I(1.241) S(0.827) P(0.827) G(0.821) D(0.821) E(-0.15) Q(-0.15) K(-0.15) N(-0.17) H(-0.17)
M(-0.27) L(-0.56) A(-0.74) C(-1) R(-1.15) F(-1.74) Y(-1.74) W(-3)
Gap (1)
Pos 5 W(9.208) R(3.901) K(0.904) Y(0.244) Q(-0.07) F(-0.75) H(-1.03) E(-1.07) N(-1.08) M(-1.69) S(-2.03) T(-2.03)
A(-2.03) G(-2.69) L(-2.69) P(-3.03) D(-3.03) C(-3.24) I(-3.69) V(-3.69)
Gap (2)
Pos 6 Y(7) F(3) H(2) W(2) Q(-1) M(-1) I(-1) L(-1) V(-1) C(-2) S(-2) T(-2) A(-2) N(-2) E(-2) R(-2) K(-2) P(-3) G(-3)
D(-3)
Gap (0)
Pos 7 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3) F(-
4) W(-4)
Gap (0)
Pos 8 K(5) R(2) E(1) Q(1) S(0) T(0) N(0) P(-1) A(-1) D(-1) H(-1) M(-1) G(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 9 A(3.817) S(0.817) C(-0.18) G(-0.18) T(-1.18) P(-1.18) N(-1.18) E(-1.18) Q(-1.18) R(-1.18) K(-1.18) M(-1.18)
I(-1.18) L(-1.18) D(-2.18) H(-2.18) V(-2.18) F(-2.18) Y(-2.18) W(-3.18)
Gap (0)
Pos 10 G(5.594) T(0.594) S(-0.40) A(-0.40) V(-0.40) D(-1.40) P(-2.40) N(-2.40) E(-2.40) Q(-2.40) H(-2.40) R(-2.40)
K(-2.40) W(-2.40) C(-3.40) M(-3.40) F(-3.40) Y(-3.40) I(-4.40) L(-4.40)
Gap (0)
Pos 11 A(3.827) S(2.430) G(0) C(-0.11) T(-0.27) N(-0.27) E(-0.74) Q(-0.74) K(-0.74) P(-1) R(-1) M(-1) I(-1.11) L(-
1.11) D(-1.27) H(-1.74) V(-2) F(-2) Y(-2) W(-3)
//

===============================
 SLIM 86
===============================
ID           DUF1458.clust.0.2.0
Center             2v18_AH_0
AvSimToCtr 0.460
AvRMSDToCtr 0.819 A
Size         103
NumDistinct 6
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            THERMUS THERMOPHILUS (3), HALORHODOSPIRA HALOPHILA (3)
Conservation       0.5

Members
      2cz8_AB_0   2cz8_EF_0   2cz8_CA_0   2cz8_GE_0   2cz8_BC_0   2cz8_FG_0   2deg_AF_0   2deh_AF_0   2dev_AF_0   2deg_EB_0
      2deh_EB_0   2dev_EB_0   2ux9_AE_0   2ux9_BF_0   2v18_AL_0   2v18_HA_0   2v18_LH_0   2v18_BG_0   2v18_CE_0   2v18_FB_0
      2v18_DI_0   2v18_JC_0   2v18_KD_0   2v18_IK_0   2v18_GF_0   2v18_EJ_0   2v21_CE_0   2v21_FB_0   2v19_AE_0   2v19_LD_0
      2v19_EI_0   2v19_FJ_0   2v19_IA_0   2v19_GK_0   2v19_HL_0   2v19_KC_0   2v19_BF_0   2v19_CG_0   2v19_DH_0   2v19_JB_0
      2vxa_AB_0   2vxa_GH_0   2vxa_HI_0   2vxa_BC_0   2vxa_EF_0   2vxa_JK_0   2vxa_CA_0   2vxa_FD_0   2vxa_IG_0   2vxa_DE_0
      2vxa_KL_0   2vxa_LJ_0   2cz8_AC_0   2cz8_EG_0   2cz8_BA_0   2cz8_FE_0   2cz8_CB_0   2cz8_GF_0   2deg_BE_0   2deh_BE_0
      2dev_BE_0   2deg_FA_0   2deh_FA_0   2dev_FA_0   2v21_BF_0   2v21_EC_0   2ux9_EA_0   2ux9_FB_0   2v19_AI_0   2v19_BJ_0
      2v19_HD_0   2v19_GC_0   2v19_CK_0   2v19_DL_0   2v19_IE_0   2v19_EA_0   2v19_KG_0   2v19_LH_0   2v19_JF_0   2v19_FB_0
      2v18_LA_0   2v18_HL_0   2v18_GB_0   2v18_JE_0   2v18_BF_0   2v18_EC_0   2v18_CJ_0   2v18_FG_0   2v18_DK_0   2v18_KI_0
      2v18_ID_0   2vxa_AC_0   2vxa_DF_0   2vxa_FE_0   2vxa_KJ_0   2vxa_CB_0   2vxa_IH_0   2vxa_JL_0   2vxa_BA_0   2vxa_HG_0
      2vxa_ED_0   2vxa_LK_0   2vxa_GI_0

Peptides

PartnerDomains
      DUF1458 (2v18_AH_0,2cz8_AB_0,2vxa_GI_0)

Dist Members Intf   Alignment
      2v18_AH_0     V     E       L       V     G       T     A       A       R     K       E     E       V
      2cz8_AB_0           K       V       Y     K       K                                         E
      2deh_EB_0     G     K       V       Y     K       K                                   W     E
      2vxa_AB_0           H       V       Y     K       I                                         K
      2vxa_AC_0           E       L       T     G       S     N       A       R                   H       T
      2vxa_GI_0     V     E       L       T     G       S     N       A       R                           T
Dist Members ResidueID Alignment
      2v18_AH_0   8     9     10      11    12     13   24   25    28    31    43   55     59
      2cz8_AB_0         3     4       5     6      7                                61
      2deh_EB_0   2     3     4       5     6      7                           38   61
      2vxa_AB_0         4     5       6     7      8                                62
      2vxa_AC_0         10    11      12    13     14   25   26    29               56     60
      2vxa_GI_0   9     10    11      12    13     14   25   26    29                      60

Alignment Occupancy       0.5   1     1     1      1    1    0.5   0.5   0.5   0.166 0.333 0.833 0.5
Gap in betw Columns       0     0     0     0      0    10   0     2     26    3

SLIM   RegEx        [VG][EKH][LV][YTV][KG][SKTI]
SLIM   Coverage           0.666666666666667
SLIM   PSSM Match Cutoff 20.5734914154702
SLIM   I=181997 Im=5973 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 G(4.208) V(2.910) I(1.901) M(-0.08) L(-0.09) A(-0.69) T(-0.69) S(-1.55) C(-2.03) F(-2.03) Y(-2.03) D(-2.55)
P(-2.69) E(-2.69) Q(-2.69) K(-2.69) N(-3.24) H(-3.24) R(-3.24) W(-3.24)
Gap (0)
Pos 1 H(6.209) E(4.321) K(3.929) Q(1.561) D(1.451) R(1.140) Y(0.295) N(0.251) T(0) S(-0.11) P(-1.11) A(-1.11) M(-
1.54) G(-2) F(-2.27) L(-2.54) V(-2.74) W(-2.74) I(-3) C(-3.37)
Gap (0)
Pos 2 V(3.620) L(3.355) I(2.620) M(1.620) A(-0.37) F(-0.37) C(-1) Y(-1) S(-2) T(-2) Q(-2) K(-2) P(-2.37) E(-2.37)
R(-2.37) W(-2.37) N(-3) H(-3) G(-3.37) D(-3.37)
Gap (0)
Pos 3 Y(6.307) T(2.906) F(2.317) V(2.233) H(1.395) W(1.313) I(1.274) S(-0.00) P(-0.04) G(-0.06) D(-0.06) M(-0.27)
L(-0.38) Q(-0.61) E(-0.85) K(-0.85) N(-0.89) A(-1.03) C(-1.37) R(-1.61)
Gap (0)
Pos 4 G(5.307) K(4.307) R(1.325) T(0.620) E(0.355) Q(0.355) S(0) A(-0.37) N(-0.56) V(-0.64) D(-1) P(-1.37) H(-1.37)
M(-1.56) Y(-2.37) W(-2.37) L(-2.56) C(-3) F(-3) I(-3.37)
Gap (0)
Pos 5 K(3.911) S(2.944) T(2.338) I(2.217) R(0.976) N(0.346) E(0.346) Q(0.346) L(0.295) A(0.140) D(-0.08) G(-0.18)
M(-0.27) P(-0.34) V(-0.62) H(-0.86) C(-1.33) F(-1.38) Y(-1.74) W(-3)
//

===============================
 SLIM 87
===============================
ID          DUF464.clust.0.2.0
Center            2g0i_BA_0
AvSimToCtr 0.462
AvRMSDToCtr 1.074 A
Size         13
NumDistinct 8
FracDDI             0.5
FracPeptides        0
FracIntra    0
Species             THERMOTOGA MARITIMA (3), STAPHYLOCOCCUS AUREUS (2), STREPTOCOCCUS PNEUMONIAE (2), STREPTOCOCCUS
MUTANS (1)
Conservation        0.375

Members
      1s12_AD_0 1s12_BC_0 1s12_CB_0 1s12_DA_0 2g0i_AB_0 2g0j_AB_0 2g0j_BA_0 2g0j_CD_0 2g0j_DC_0 2idl_AB_0
      2idl_BA_0 2p92_AB_0 2p92_BA_0

Peptides

PartnerDomains
      DUF464 (2g0i_BA_0,1s12_AD_0,1s12_CB_0,1s12_DA_0)

Dist Members Intf   Alignment
      2g0i_BA_0     Y     D     I     A     A     T      L     N     N     A     V     L    E     K     L     L       E
      A     F       L     G     N     L
      1s12_AD_0           K     T     A     S     L      L     H           F                      C     K     V
      A     M       R     S     E     L
      1s12_CB_0           K     T     A     S     L      L     H     N     F     A                C     K     V
      A     M             S           L
      1s12_DA_0           K     T     A     S     L      L     H     N     F           A
            M             S           L
      2idl_AB_0           D     V     A     S     T      L     N     N     S     K                      L     F       E
      S     F       L     G     N
      2idl_BA_0                 V     A     S     T      L     N     N     S     K                      L     F       E
      S     F       L       G   N     L
      2p92_AB_0                       A     G     A      V     G     N     A           L          E     L     I       Q
      T             V
      2p92_BA_0                 I     A     G     A      V     G     N     A           L          E     L     I       Q
      T             V

Dist Members ResidueID Alignment
      2g0i_BA_0   27    30    31      34    35    38     39    42    45    46    49    50   80    81    84    85
      87    88    89    91    92      95    96
      1s12_AD_0         320   321     324   325   328    329   332         336                    362   365   366
      369   370   372   373   376     377
      1s12_CB_0         120   121     124   125   128    129   132   135   136   139              162   165   166
      169   170         173           177
      1s12_DA_0         20    21      24    25    28     29    32    35    36          39
            70          73            77
        2idl_AB_0         31    32    35    36    39    40    43    46       47    50                     86    87
        89    90    91    93    94    97
        2idl_BA_0               32    35    36    39    40    43    46       47    50                     86    87
        89    90    91    93    94    97    98
        2p92_AB_0                     35    36    39    40    43    46       47         51          78    81    82
        84    85          88
        2p92_BA_0               32    35    36    39    40    43    46       47         51          78    81    82
        84    85          88

Alignment Occupancy       0.125 0.625 0.875 1     1     1     1     1        0.875 1    0.5   0.5   0.125 0.625 0.875
      0.875 0.625 0.875   0.75 0.75 0.75 0.5      0.625
Gap in betw Columns       0     2     0     2     0     2     2     0        2     0    26,30 2     0     1     0       0
      1     0     2       0

SLIM   RegEx        [KD][TIV]..A[SGA]..[TLA][LV]..[HNG]..N[FAS]..[KAV][LA]
SLIM   Coverage           0.875
SLIM   PSSM Match Cutoff 23.5730983580844
SLIM   I=181997 Im=5139 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 D(4.615) K(4.020) E(1.053) R(1.031) Q(0.238) T(0.053) N(0.053) S(-0.47) P(-1.47) H(-1.47) A(-1.76) M(-1.89)
G(-1.94) Y(-2.76) L(-2.89) C(-3.47) I(-3.47) V(-3.47) F(-3.47) W(-3.76)
Gap (0)
Pos 1 T(3.022) I(2.929) V(2.665) L(0.946) M(0.403) S(0.083) P(0.063) D(0.043) G(0.035) A(-0.73) E(-0.86) Q(-0.86)
K(-0.86) N(-0.91) H(-0.91) F(-0.93) C(-1.13) Y(-1.44) R(-1.81) W(-3.13)
Gap (2)
Pos 2 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (0)
Pos 3 G(4.621) S(3.547) A(2.171) T(0.885) N(0.575) D(-0.30) E(-0.34) Q(-0.34) K(-0.34) C(-1.00) V(-1.04) P(-1.17)
R(-1.17) M(-1.24) H(-1.27) I(-2.00) L(-2.00) F(-2.17) Y(-2.17) W(-2.64)
Gap (2)
Pos 4 L(3.026) T(3.026) A(2.633) V(2.030) M(1.098) I(1.069) S(0.559) G(0.243) P(0.122) D(0.058) C(-0.64) Q(-0.65)
K(-0.65) N(-0.72) E(-0.72) F(-0.77) H(-0.84) R(-1.27) Y(-1.50) W(-2.50)
Gap (0)
Pos 5 L(3.728) V(3.357) I(2.357) M(1.827) F(-0.17) A(-0.64) C(-1) Y(-1) S(-2) T(-2) Q(-2) K(-2) R(-2.17) W(-2.17)
P(-2.64) E(-2.64) N(-3) H(-3) G(-3.64) D(-3.64)
Gap (2)
Pos 6 H(7.019) N(5.026) G(4.617) Y(1.041) D(0.756) T(0.357) S(0.341) E(-0.24) Q(-0.24) R(-0.24) K(-0.60) A(-1.04)
V(-1.14) F(-1.77) P(-2) M(-2.17) W(-2.39) C(-3) I(-3.17) L(-3.17)
Gap (2)
Pos 7 N(5.866) S(0.866) D(0.866) T(-0.13) G(-0.13) E(-0.13) Q(-0.13) R(-0.13) K(-0.13) H(-1.13) P(-2.13) A(-2.13)
M(-2.13) Y(-2.13) C(-3.13) I(-3.13) L(-3.13) V(-3.13) F(-3.13) W(-4.13)
Gap (0)
Pos 8 F(5.019) A(3.054) S(2.689) Y(2.030) W(0.049) T(-0.14) N(-0.17) G(-0.44) M(-0.50) I(-0.60) L(-0.60) C(-0.65)
E(-0.89) Q(-0.89) K(-0.89) D(-1.14) H(-1.27) R(-1.39) P(-1.44) V(-1.50)
Gap (2)
Pos 9 K(3.615) A(1.951) V(1.924) I(0.943) R(0.641) E(-0.29) Q(-0.29) S(-0.49) M(-0.73) L(-0.86) T(-1.16) N(-1.19)
C(-1.69) G(-1.80) P(-1.86) D(-2.16) H(-2.16) Y(-2.33) F(-2.58) W(-3.69)
Gap (0)
Pos 10 L(3.021) V(2.021) A(1.940) M(1.035) I(1.035) F(-0.93) S(-0.94) C(-1.33) Y(-1.86) G(-2.02) T(-2.33) Q(-2.33)
R(-2.33) K(-2.33) P(-2.73) N(-2.73) E(-2.73) W(-2.86) H(-3.33) D(-3.73)
//

===============================
 SLIM 88
===============================
ID           DUF54.clust.0.2.0
Center             2pzz_AC_0
AvSimToCtr 0.522
AvRMSDToCtr 0.534 A
Size         11
NumDistinct 6
FracDDI            1
FracPeptides       0
FracIntra    0
Species           ARCHAEOGLOBUS FULGIDUS DSM 4304 (2), METHANOCALDOCOCCUS JANNASCHII (1), PYROCOCCUS HORIKOSHII (1),
ARCHAEOGLOBUS FULGIDUS (1), SULFOLOBUS SOLFATARICUS (1)
Conservation       0.333333333333333

Members
      2nwu_AB_0 2nwu_BA_0 2ogk_CD_0 2ogk_DC_0 2pzz_CA_0 2pzz_BD_0 2pzz_DB_0 3d7a_AB_0 3d7a_BA_0 3c9g_AB_0
      3c9g_BA_0

Peptides

PartnerDomains
      DUF54 (2pzz_AC_0,2nwu_AB_0,2ogk_CD_0,3d7a_AB_0,3c9g_AB_0,3c9g_BA_0)

Dist Members Intf   Alignment
      2pzz_AC_0     K     P     T   E     D     K     V     A     N     E     F     K     Q     Y     V     G
      2nwu_AB_0     R     P     S   E     D     K     V                             K     Q     A     V
      2ogk_CD_0     H     S     T   E     D     K     V     A                       K     Q     Y     L
      3d7a_AB_0     Y     P     T   E     D     K     V     A                       K     Q     Y
      3c9g_AB_0     H     P     T   E     S     K     V                             K     Q     T
      3c9g_BA_0     H     P     T   E     S     K     V     A                       K     Q     T

Dist Members ResidueID Alignment
      2pzz_AC_0   11    12    13    14    15    18    19    22    39    40    41    86    87    90    91    102
        2nwu_AB_0   11    12    13    14    15    18    19                           88     89    92    93
        2ogk_CD_0   16    17    18    19    20    23    24    27                     102    103   106   107
        3d7a_AB_0   15    16    17    18    19    22    23    26                     92     93    96
        3c9g_AB_0   198   199   200   201   202   205   206                          269    270   273
        3c9g_BA_0   198   199   200   201   202   205   206   209                    269    270   273

Alignment Occupancy       1     1     1     1     1     1     1     0.666 0.166 0.166 0.166 1     1     1     0.5
      0.166
Gap in betw Columns       0     0     0     0     2     0     2     57,74 0    2     0

SLIM   RegEx        [HRKY][PS][TS]E[DS]..KV..A
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 20.9697791218574
SLIM   I=181997 Im=7440 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 H(7.307) Y(5.228) R(3.276) K(3.264) F(1.266) N(0.539) Q(0.383) D(0.372) W(0.274) E(0.133) T(-0.28) S(-0.83)
M(-1.37) A(-1.54) P(-1.83) V(-1.92) L(-2.03) G(-2.11) I(-2.27) C(-2.74)
Gap (0)
Pos 1 P(6.817) S(2.241) T(1) A(-0.27) N(-0.27) D(-0.74) E(-0.74) Q(-0.74) K(-0.74) G(-1.27) H(-1.74) R(-1.74) M(-
1.74) V(-2) C(-2.27) I(-2.74) L(-2.74) Y(-2.74) F(-3.27) W(-3.74)
Gap (0)
Pos 2 T(3.827) S(2.430) G(0.888) D(0.888) P(0.844) N(0.251) E(0) Q(0) K(0) H(-0.11) A(-0.27) C(-1) R(-1) M(-1) I(-2)
L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 3 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3) L(-3) V(-3) F(-3) W(-3) C(-4)
Gap (0)
Pos 4 D(5.595) S(2.937) E(1.660) T(1) N(1) Q(0) A(-0.00) G(-0.54) K(-0.54) P(-1) H(-1) R(-1.54) C(-1.85) M(-1.85)
I(-2.54) V(-2.54) F(-2.54) Y(-2.54) L(-2.85) W(-3.54)
Gap (2)
Pos 5 K(5) R(2) E(1) Q(1) S(0) T(0) N(0) P(-1) A(-1) D(-1) H(-1) M(-1) G(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 6 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (2)
Pos 7 A(3.594) S(0.594) C(-0.40) G(-0.40) T(-1.40) P(-1.40) N(-1.40) E(-1.40) Q(-1.40) R(-1.40) K(-1.40) M(-1.40)
I(-1.40) L(-1.40) D(-2.40) H(-2.40) V(-2.40) F(-2.40) Y(-2.40) W(-3.40)
//

===============================
 SLIM 89
===============================
ID          DUF77.clust.0.15.1
Center            2eky_FG_0
AvSimToCtr 0.398
AvRMSDToCtr 1.439 A
Size         23
NumDistinct 8
FracDDI           1
FracPeptides      0
FracIntra    0
Species           STREPTOCOCCUS PNEUMONIAE TIGR4 (4), THERMOTOGA MARITIMA (2), METHANOCALDOCOCCUS JANNASCHII (1),
METHANOBACTERIUM THERMOAUTOTROPHICUM (1)
Conservation      0.5

Members
      1lxn_AD_0 1lxn_BC_0 1lxn_CB_0 1lxn_DA_0 2eky_AD_0 2epi_AD_0 2eky_BC_0 2eky_EH_0 2eky_CB_0 2epi_DA_0
      2eky_DA_0 2eky_HE_0 2eky_GF_0 2epi_BC_0 2epi_CB_0 1vk8_AD_0 1vk8_BC_0 1vk8_CB_0 1vk8_DA_0 2ibo_AB_0
      2ibo_BA_0 2ibo_CD_0 2ibo_DC_0

Peptides

PartnerDomains
      DUF77 (2eky_FG_0,1lxn_AD_0,1vk8_AD_0,1vk8_BC_0,2ibo_AB_0,2ibo_BA_0,2ibo_CD_0,2ibo_DC_0)

Dist Members Intf   Alignment
      2eky_FG_0     I     P     L     G      K      G    A      S      V      D      R      V
      1lxn_AD_0     I     P     L     G      T           T      S      L      D      R      Y
      1vk8_AD_0     V     P     A                   E    D             L             R      V
      1vk8_BC_0     V     P     A            V      E    D             L      K      R      V
      2ibo_AB_0     Q     L                  L                  Q      R             F      N
      2ibo_BA_0     Q     L           P      L                  Q      R             F      N
      2ibo_CD_0     L           L     V             G
      2ibo_DC_0     L     P           L      V                  Q      R             F      N

Dist Members ResidueID Alignment
      2eky_FG_0   14    15    16      17     18     19   20     21     22     72     73     75
      1lxn_AD_0   3009 3010 3011      3012   3013        3016   3017   3018   3070   3071   3073
      1vk8_AD_0   11    12    13                    15   16            19            70     72
      1vk8_BC_0   11    12    13             14     15   16            19     69     70     72
      2ibo_AB_0   8     10                   12                 14     18            71     73
      2ibo_BA_0   8     10            11     12                 14     18            71     73
      2ibo_CD_0   10          12      13            15
      2ibo_DC_0   10    11            12     13                 14     18            71     73

Alignment Occupancy       1     0.875 0.625 0.625 0.75   0.5    0.5    0.625 0.875 0.375 0.875 0.875
Gap in betw Columns       0,1   0     0     0     0      0      0      0,3   50,52 1
SLIM   RegEx        [QILV].{0,1}[PL][LA][GPLV][LVTK][GE][DAT][QS].{0,3}[RLV]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 25.292108951311
SLIM   I=181997 Im=4730 Id=2 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(3.615) I(3.021) V(2.964) L(2.785) M(1.240) E(0.645) K(-0.27) R(-0.30)   F(-0.50) A(-0.64) Y(-1) S(-1.04) T(-
1.04) C(-1.24) N(-1.24) H(-1.24) D(-1.27) P(-1.89) W(-2.37) G(-2.89)
Gap (0,1)
Pos 1 P(6.530) L(2.615) V(1.630) M(0.658) I(0.630) T(0.549) A(-1.13) S(-1.33)   Q(-1.33) K(-1.33) F(-1.34) N(-1.41)
E(-1.41) D(-1.45) C(-2.09) Y(-2.09) R(-2.13) H(-2.33) G(-2.41) W(-3.09)
Gap (0)
Pos 2 L(3.023) A(2.623) V(2.023) M(1.051) I(1.051) S(-0.31) F(-0.89) C(-0.94)   G(-1.35) Y(-1.76) T(-1.94) Q(-1.94)
R(-1.94) K(-1.94) P(-2.20) N(-2.20) E(-2.20) W(-2.76) H(-2.94) D(-3.20)
Gap (0)
Pos 3 P(4.920) G(4.613) V(2.262) L(1.970) I(1.236) M(0.256) T(0.051) A(-0.76)   S(-1.10) F(-1.68) D(-1.92) Q(-2.17)
K(-2.17) C(-2.20) Y(-2.20) E(-2.27) N(-2.38) R(-2.60) H(-2.76) W(-2.82)
Gap (0)
Pos 4 K(2.930) V(2.928) L(2.664) T(1.948) I(1.930) M(0.962) R(0.015) S(-0.63)   Q(-0.63) E(-0.67) A(-0.83) P(-0.83)
D(-0.90) G(-0.98) F(-1.00) N(-1.29) C(-1.44) Y(-1.52) H(-1.63) W(-2.83)
Gap (0)
Pos 5 G(4.614) E(3.614) D(0.662) Q(0.631) T(-0.07) K(-0.33) S(-0.69) A(-1.07)   N(-1.25) H(-1.25) R(-1.25) V(-1.33)
P(-2.07) M(-3.07) Y(-3.07) W(-3.07) F(-3.69) C(-4.07) I(-4.07) L(-4.07)
Gap (0)
Pos 6 D(4.617) T(2.021) A(1.932) E(0.702) S(-0.07) N(-0.16) G(-0.58) P(-0.73)   Q(-0.86) K(-1.33) H(-1.45) C(-1.69)
R(-2.07) M(-2.25) I(-2.58) L(-2.69) V(-3.07) F(-3.07) Y(-3.07) W(-4.07)
Gap (0)
Pos 7 Q(4.023) S(2.640) E(1.105) K(0.238) R(0.105) T(0.053) N(0.053) A(-0.20)   D(-0.47) H(-0.76) M(-0.76) G(-1.20)
P(-1.47) Y(-1.76) C(-2.20) L(-2.47) V(-2.47) W(-2.76) I(-2.94) F(-2.94)
Gap (0,3)
Pos 8 R(4.020) L(3.038) V(2.665) I(1.667) M(1.178) K(1.043) Q(0.083) F(-0.82)   E(-0.89) A(-0.91) N(-0.91) H(-0.91)
Y(-1.44) S(-1.58) T(-1.58) C(-1.59) P(-2.44) W(-2.58) G(-2.75) D(-2.75)
//

===============================
 SLIM 90
===============================
ID          DUF903.clust.0.2.2
Center            3bdu_EA_0
AvSimToCtr 0.547
AvRMSDToCtr 0.733 A
Size        12
NumDistinct 6
FracDDI           0.166666666666667
FracPeptides        0
FracIntra    0
Species             SALMONELLA TYPHIMURIUM LT2 (4)
Conservation        1

Members
      2ra2_AF_0 2ra2_CD_0 2ra2_EC_0 2ra2_FB_0 3bdu_AC_0 3bdu_BD_0 3bdu_FE_0 3bdu_CG_0 3bdu_GB_0 3bdu_DF_0
      2rb6_AB_0 2rb6_BA_0

Peptides

PartnerDomains
      DUF903 (3bdu_EA_0)

Dist Members Intf   Alignment
      3bdu_EA_0     D     R     D      E     T       G    Q    Q     Q     Q    I    N    D     N
      2ra2_AF_0     D     R     D            T       G               Q     Q    I    N          D
      2ra2_CD_0     D           D      D     T       G               Q     Q    I    N          D
      2ra2_EC_0     D     R     D      D     T       G               Q     Q    I    N          D
      2ra2_FB_0     D     R     D      D     T       G         K     Q     Q    I    N          D
      2rb6_AB_0                                           Q    I     I     E    R    L

Dist Members ResidueID Alignment
      3bdu_EA_0   11    13    24       26    27      28   38   39    40    41   42   43   45    46
      2ra2_AF_0   12    14    25             28      29              41    42   43   44         47
      2ra2_CD_0   12          25       27    28      29              41    42   43   44         47
      2ra2_EC_0   12    14    25       27    28      29              41    42   43   44         47
      2ra2_FB_0   12    14    25       27    28      29        40    41    42   43   44         47
      2rb6_AB_0                                           72   73    74    75   76   77

Alignment Occupancy        0.833 0.666 0.833 0.666 0.833 0.833 0.333 0.5   1    1    1    1     0.166 0.833
Gap in betw Columns        1     10    1     0     0     10    0     0     0    0    2

SLIM   RegEx        [QIK][QI][QE][IR][NL]..[DN]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 18.4975106823249
SLIM   I=181997 Im=12353 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(3.226) K(3.226) I(2.210) E(0.526) R(0.526) L(0.244) M(-0.38) V(-0.72) S(-1.03) T(-1.03) N(-1.07) D(-1.44)
H(-1.44) A(-1.69) F(-1.69) Y(-1.92) P(-2.03) C(-2.55) G(-3.03) W(-3.24)
Gap (0)
Pos 1 Q(4.817) I(2.212) E(1.819) R(0.821) K(0.821) L(0.295) M(0.251) S(-0.15) T(-0.15) N(-0.17) D(-0.17) H(-0.17)
V(-0.56) A(-1) Y(-1) P(-1.15) F(-1.56) W(-2.11) G(-2.15) C(-2.27)
Gap (0)
Pos 2 Q(4.827) E(3.430) K(1) R(0.888) D(0.725) S(0) T(0) N(0) H(0) M(-0.15) P(-1) A(-1) Y(-1.11) G(-2) L(-2.11) V(-
2.11) W(-2.11) I(-3) F(-3) C(-3.11)
Gap (0)
Pos 3 I(3.817) R(3.209) L(1.821) M(0.844) V(0.821) K(0.241) F(-0.17) Q(-0.70) A(-1) Y(-1.11) C(-1.15) N(-1.56) E(-
1.56) H(-1.56) S(-1.74) T(-1.74) P(-2.74) D(-2.74) W(-3) G(-3.27)
Gap (0)
Pos 4 N(5.817) L(2.212) V(1.220) S(0.827) D(0.819) M(0.295) I(0.241) T(-0.15) Q(-0.15) R(-0.15) K(-0.15) E(-0.17)
G(-0.17) H(-1.15) F(-1.56) A(-1.74) Y(-1.74) P(-2.11) C(-2.27) W(-3.27)
Gap (2)
Pos 5 D(5.596) N(4.234) E(1.627) T(0.682) S(0.113) Q(-0.18) G(-0.88) K(-0.88) H(-1.18) P(-1.31) R(-1.35) A(-2.18)
M(-2.88) Y(-2.88) C(-3.18) I(-3.18) V(-3.18) F(-3.18) L(-3.88) W(-4.18)
//

===============================
 SLIM 91
===============================
ID           Defensin_1.clust.0.2.0
Center             1zmm_AB_0
AvSimToCtr 0.481
AvRMSDToCtr 0.813 A
Size         23
NumDistinct 7
FracDDI            0.857142857142857
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (3)
Conservation       1

Members
      1dfn_AB_0 1zmh_AB_0 1zmh_BA_0 3gny_AB_0 1dfn_BA_0 3gny_BA_0 1zmh_CD_0 1zmi_CD_0 1zmk_AB_0 1zmi_AB_0
      1zmm_CD_0 1zmm_BA_0 1zmm_DC_0 3i5w_AB_0 3i5w_BA_0 1zmp_AC_0 1zmp_BD_0 1zmp_CA_0 1zmp_DB_0 1zmh_DC_0
      1zmi_DC_0 1zmk_BA_0 1zmi_BA_0

Peptides

PartnerDomains
      Defensin_1 (1zmm_AB_0,1zmh_AB_0,1zmh_BA_0,1dfn_BA_0,3i5w_AB_0,3i5w_BA_0)

Dist Members Intf   Alignment
      1zmm_AB_0     C     C     V      G   N    C     L     I     G     Y
      1dfn_AB_0                        G   T    C     I     Y           F
      1zmh_AB_0           C                T    C     I     Y           F
      1zmh_BA_0     C     C     Y          T    C     I     Y           F
      1dfn_BA_0     C     C     Y      G   T    C     I     Y           F
        3i5w_AB_0   C     C     S     G       V    C    E    I         L
        3i5w_BA_0   C     C     S     G       V    C    E    I    S    L

Dist Members ResidueID Alignment
      1zmm_AB_0   2     4     16      17      18   19   20   21   22   28
      1dfn_AB_0                       18      19   20   21   22        29
      1zmh_AB_0         3                     17   18   19   20        27
      1zmh_BA_0   1     3     15              17   18   19   20        27
      1dfn_BA_0   3     5     17      18      19   20   21   22        29
      3i5w_AB_0   3     5     17      18      19   20   21   22        29
      3i5w_BA_0   3     5     17      18      19   20   21   22   23   29

Alignment Occupancy       0.714 0.857 0.714 0.714 1     1    1    1    0.285 1
Gap in betw Columns       1     11    0     0     0     0    0    6

SLIM   RegEx        [SYV]G[TVN]C[IEL][YI]
SLIM   Coverage           0.857142857142857
SLIM   PSSM Match Cutoff 20.4402258218302
SLIM   I=181997 Im=4736 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Y(5.747) S(2.750) V(2.072) F(1.763) I(1.102) H(0.799) W(0.757) A(-0.04) T(-0.18) N(-0.19) M(-0.51) L(-0.63)
Q(-0.89) E(-1.06) K(-1.06) G(-1.18) D(-1.18) C(-1.62) R(-1.89) P(-1.97)
Gap (0)
Pos 1 G(5.663) T(0.663) S(-0.33) A(-0.33) V(-0.33) D(-1.33) P(-2.33) N(-2.33) E(-2.33) Q(-2.33) H(-2.33) R(-2.33)
K(-2.33) W(-2.33) C(-3.33) M(-3.33) F(-3.33) Y(-3.33) I(-4.33) L(-4.33)
Gap (0)
Pos 2 N(4.064) T(3.446) V(2.752) I(1.761) S(0.683) D(0.670) G(0.536) P(0.477) M(0.006) L(-0.14) E(-0.28) Q(-0.28)
K(-0.28) H(-0.44) A(-0.66) R(-1.00) C(-1.13) Y(-1.60) F(-1.66) W(-3.09)
Gap (0)
Pos 3 C(9) A(0) S(-1) T(-1) M(-1) I(-1) L(-1) V(-1) F(-2) Y(-2) W(-2) P(-3) G(-3) N(-3) D(-3) Q(-3) H(-3) R(-3) K(-
3) E(-4)
Gap (0)
Pos 4 E(3.748) I(3.474) L(2.487) V(1.489) M(0.973) Q(0.769) D(0.761) K(-0.19) F(-0.31) S(-0.96) T(-0.96) A(-1) R(-
1.09) N(-1.13) H(-1.13) Y(-1.19) C(-1.31) P(-1.96) W(-2.78) G(-2.96)
Gap (0)
Pos 5 Y(6.440) I(3.161) F(2.477) H(1.445) W(1.445) L(1.216) M(0.318) V(0.318) C(-1.44) A(-1.44) Q(-1.46) S(-2) T(-2)
N(-2.31) E(-2.31) R(-2.31) K(-2.31) P(-3) D(-3) G(-3.31)
//

===============================
 SLIM 92
===============================
ID          Disintegrin.clust.0.2.0
Center              3c05_AB_0
AvSimToCtr 0.500
AvRMSDToCtr 0.654   A
Size         5
NumDistinct 4
FracDDI             0.75
FracPeptides        0
FracIntra    0
Species             AGKISTRODON CONTORTRIX CONTORTRIX (2), ECHIS CARINATUS (1)
Conservation        0.666666666666667

Members
      1tej_AB_0 1tej_BA_0 3c05_BA_0 3c05_CD_0 3c05_DC_0

Peptides

PartnerDomains
      Disintegrin (3c05_AB_0,1tej_BA_0,3c05_BA_0)

Dist Members Intf Alignment
      3c05_AB_0   N     C        C     D    A     A     T     C     K     L      A     D
      1tej_AB_0                  C     D    P     Q     T     C     K
      1tej_BA_0                  C     D    P     V     I     C     K
      3c05_BA_0   N     C        C     D    A     A     T     C     K     L      A     E

Dist Members ResidueID Alignment
      3c05_AB_0   5     7     8        9    10    11    12    13    14    15     22    23
      1tej_AB_0               7        8    9     10    11    12    13
      1tej_BA_0               7        8    9     10    11    12    13
      3c05_BA_0   5     7     8        9    10    11    12    13    14    15     22    23

Alignment Occupancy        0.5   0.5   1    1     1     1     1     1     1      0.5   0.5   0.5
Gap in betw Columns        1     0     0    0     0     0     0     0     0      6     0

SLIM   RegEx        N.CCD[AP][AQV][TI]CKL
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 19.3034902410357
SLIM   I=181997 Im=7624 Id=40 Idm=8
SLIM   PSSM p-value 0.000185017532691542

PSSM Listing
Pos 0 N(5.306) S(0.306) D(0.306) T(-0.69) G(-0.69) E(-0.69) Q(-0.69) R(-0.69) K(-0.69) H(-1.69) P(-2.69) A(-2.69)
M(-2.69) Y(-2.69) C(-3.69) I(-3.69) L(-3.69) V(-3.69) F(-3.69) W(-4.69)
Gap (1)
Pos 1 C(8.306) A(-0.69) S(-1.69) T(-1.69) M(-1.69) I(-1.69) L(-1.69) V(-1.69) F(-2.69) Y(-2.69) W(-2.69) P(-3.69)
G(-3.69) N(-3.69) D(-3.69) Q(-3.69) H(-3.69) R(-3.69) K(-3.69) E(-4.69)
Gap (0)
Pos 2 C(9) A(0) S(-1) T(-1) M(-1) I(-1) L(-1) V(-1) F(-2) Y(-2) W(-2) P(-3) G(-3) N(-3) D(-3) Q(-3) H(-3) R(-3) K(-
3) E(-4)
Gap (0)
Pos 3 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (0)
Pos 4 P(6.307) A(3.313) S(0.433) T(0.433) G(-0.56) C(-0.64) N(-1) E(-1) Q(-1) K(-1) D(-1.37) R(-1.37) M(-1.37) I(-
1.56) L(-1.56) H(-2) V(-2) Y(-2.37) F(-2.56) W(-3.37)
Gap (0)
Pos 5 Q(3.619) A(3.319) V(2.621) I(1.652) E(0.725) S(0.496) M(0.107) K(-0.10) L(-0.10) R(-0.13) C(-0.50) G(-0.60)
T(-0.75) N(-0.80) D(-1.10) H(-1.10) P(-1.17) Y(-1.37) F(-1.75) W(-2.64)
Gap (0)
Pos 6 T(3.713) I(2.621) S(0.728) P(0.718) D(0.718) G(0.714) L(0.667) M(-0.04) V(-0.24) N(-0.27) E(-0.27) Q(-0.27)
H(-0.27) K(-0.27) C(-1) A(-1) F(-1.04) R(-1.24) Y(-1.64) W(-3)
Gap (0)
Pos 7 C(9) A(0) S(-1) T(-1) M(-1) I(-1) L(-1) V(-1) F(-2) Y(-2) W(-2) P(-3) G(-3) N(-3) D(-3) Q(-3) H(-3) R(-3) K(-
3) E(-4)
Gap (0)
Pos 8 K(5) R(2) E(1) Q(1) S(0) T(0) N(0) P(-1) A(-1) D(-1) H(-1) M(-1) G(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 9 L(3.306) V(2.306) M(1.306) I(1.306) F(-0.69) C(-1.69) A(-1.69) Y(-1.69) S(-2.69) T(-2.69) Q(-2.69) R(-2.69)
K(-2.69) W(-2.69) P(-3.69) N(-3.69) E(-3.69) H(-3.69) G(-4.69) D(-4.69)
//

===============================
 SLIM 93
===============================
ID           DrsE.clust.0.15.3
Center             2hyb_NP_0
AvSimToCtr 0.406
AvRMSDToCtr 1.005 A
Size         20
NumDistinct 7
FracDDI            1
FracPeptides       0
FracIntra    0
Species            ESCHERICHIA COLI (5), CHROMATIUM VINOSUM (2)
Conservation       0.714285714285714

Members
      1jx7_AD_0 1jx7_DA_0 1jx7_CE_0 1jx7_EC_0 1jx7_BF_0 2d1p_EG_0 2d1p_HD_0 2hyb_BD_0 2hyb_EA_0 2hyb_QM_0
        2hyb_HJ_0 2hyb_KG_0 2d1p_DH_0 2d1p_GE_0 2hyb_AE_0 2hyb_MQ_0 2hyb_DB_0 2hyb_PN_0 2hyb_GK_0 2hyb_JH_0

Peptides

PartnerDomains
      DrsE (2hyb_NP_0,1jx7_AD_0,1jx7_DA_0,1jx7_EC_0,2d1p_EG_0,2d1p_DH_0,2hyb_AE_0)

Dist Members Intf   Alignment
      2hyb_NP_0     Y     Q     H     Q      D      Q      D      D      R      R
      1jx7_AD_0     Y     G     S     E                           E      G
      1jx7_DA_0     Y     G     S     E      F                    G      Y
      1jx7_EC_0     Y     G     S     E      F                    E
      2d1p_EG_0     Y     G     T     Q      S      Q      D      E      F
      2d1p_DH_0     H     G     T     A      R
      2hyb_AE_0     Y     G     T     I                                  K

Dist Members ResidueID Alignment
      2hyb_NP_0   5012 5013 5014      5015   5018   5022   5056   5057   5058   5063
      1jx7_AD_0   613   614   615     616                         657    658
      1jx7_DA_0   13    14    15      16     19                   58     59
      1jx7_EC_0   413   414   415     416    419                  457
      2d1p_EG_0   12    13    14      15     18     22     56     57     58
      2d1p_DH_0   13    14    15      16     19
      2hyb_AE_0   1217 1218 1219      1220                               1263

Alignment Occupancy       1     1     1      1      0.714 0.285 0.285 0.714 0.714 0.142
Gap in betw Columns       0     0     0      2      37,38 0

SLIM   RegEx        [YH][GQ][STH][EQAI]..[FSDR]
SLIM   Coverage           0.857142857142857
SLIM   PSSM Match Cutoff 20.0773463562872
SLIM   I=181997 Im=5146 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Y(6.846) H(6.068) F(2.848) W(1.848)    N(-0.68) Q(-0.78) D(-0.84) M(-1.09) V(-1.09) I(-1.13) L(-1.13) T(-1.35)
E(-1.35) R(-1.35) S(-1.78) K(-1.78) A(-2)    C(-2.09) P(-2.78) G(-2.78)
Gap (0)
Pos 1 G(5.845) Q(3.059) T(0.905) E(0.158)    S(0) A(-0.09) V(-0.13) R(-0.68) K(-0.68) D(-0.78) N(-1.35) H(-1.35) M(-
1.68) P(-1.78) W(-2) Y(-2.35) C(-3) F(-3)    L(-3.35) I(-3.78)
Gap (0)
Pos 2 H(6.055) T(3.207) S(3.203) N(0.684)    D(0.684) G(0.478) P(0.294) A(0.294) Y(0.158) E(0) Q(0) K(-0.09) R(-0.78)
M(-1.09) C(-1.13) F(-1.78) V(-2) I(-2.09)    L(-2.09) W(-2.78)
Gap (0)
Pos 3 E(4.186) Q(3.820) A(2.093) I(2.065) D(1.246) K(0.693) R(0.234) L(0.155) S(0.115) T(-0.24) M(-0.24) N(-0.25)
H(-0.30) V(-0.76) P(-1.13) G(-1.41) Y(-1.44) C(-1.52) F(-1.62) W(-2.60)
Gap (2)
Pos 4 F(4.747) D(4.057) R(3.058) S(2.083) Y(1.755) E(0.304) K(0.235) N(-0.06) T(-0.14) W(-0.23) Q(-0.37) A(-0.69)
M(-0.92) H(-1.04) L(-1.11) I(-1.14) G(-1.47) V(-1.97) P(-2.04) C(-2.24)
//

===============================
 SLIM 94
===============================
ID           DrsE.clust.0.3.2
Center             2hyb_GI_0
AvSimToCtr 0.717
AvRMSDToCtr 0.405 A
Size         9
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            ESCHERICHIA COLI (3), CHROMATIUM VINOSUM (1)
Conservation       0.75

Members
      2d1p_AC_0 2d1p_DF_0 2d1p_GI_0 2hy5_AC_0 2hyb_AC_0 2hyb_DF_0 2hyb_PR_0 2hyb_MO_0 2hyb_JL_0

Peptides

PartnerDomains
      DsrH (2hyb_GI_0,2d1p_AC_0,2d1p_DF_0,2d1p_GI_0)

Dist Members Intf   Alignment
      2hyb_GI_0     T     F     E   D      D      R      Y      A      G      F      V      D      T      T      C      D      T
      V     A       L
      2d1p_AC_0           L     Q   D      D      R      Y      T             F      V      R      T      V      H
      Q     A
      2d1p_DF_0     T     L     Q   D      D      R      Y      T             F      V      R      T      V      H      P
            A
      2d1p_GI_0           L     Q   D      D      R      Y      T             F      V      R      T      V      H      P
      Q     A

Dist Members ResidueID Alignment
      2hyb_GI_0   2406 2433 2434    2435   2465   2469   2485   2486   2487   2488   2489   2490   2492   2493   2495   2496
      2497 2498 2500 2502
      2d1p_AC_0         30    31    32     60     64     79     80            82     83     84     86     87     89
      92    94
        2d1p_DF_0   4     30    31     32   60    64     79    80       82     83   84    86    87    89    90
              94
        2d1p_GI_0         30    31     32   60    64     79    80       82     83   84    86    87    89    90
        92    94

Alignment Occupancy       0.5   1      1    1     1      1     1    1   0.25   1    1     1     1     1     1
      0.75 0.25 0.75      1     0.25
Gap in betw Columns       25,26 0      0    27,29 3      14,15 0    1   0      0    1     0     1     0     1     1

SLIM   RegEx        Y[TA].FV[RD].T[VT].[HC][PD].[QV].A
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 22.5357056546784
SLIM   I=181997 Im=5795 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Y(7) F(3) H(2) W(2) Q(-1) M(-1) I(-1) L(-1) V(-1) C(-2) S(-2) T(-2) A(-2) N(-2) E(-2) R(-2) K(-2) P(-3) G(-3)
D(-3)
Gap (0)
Pos 1 T(3.714) A(2.633) S(1) G(0.827) P(0.756) D(0.728) N(-0.17) E(-0.17) Q(-0.17) K(-0.17) H(-0.24) C(-0.64) R(-1)
M(-1) I(-1.64) L(-1.64) V(-2) F(-2) Y(-2) W(-3)
Gap (1)
Pos 2 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 3 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (0)
Pos 4 R(4.712) D(4.614) K(1.728) E(0.954) Q(0.827) N(0.357) T(-0.04) H(-0.17) S(-0.64) A(-1.17) M(-1.24) P(-1.64)
G(-1.64) Y(-2.17) L(-2.24) C(-3) I(-3) V(-3) F(-3) W(-3.17)
Gap (1)
Pos 5 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 6 V(3.713) I(2.714) T(2.621) M(0.756) L(0.728) A(-0.17) S(-0.24) P(-0.24) G(-0.33) D(-0.33) C(-1) E(-1.04) Q(-
1.04) K(-1.04) F(-1.17) Y(-1.17) N(-1.24) H(-1.24) R(-2.04) W(-3)
Gap (1)
Pos 7 H(7.712) C(7.613) Y(1.718) N(0.718) D(0.718) T(-0.17) Q(-0.27) R(-0.27) E(-0.28) S(-1) A(-1.04) F(-1.17) K(-
1.24) M(-1.64) V(-1.64) W(-2) I(-2.04) L(-2.04) P(-2.17) G(-2.17)
Gap (0)
Pos 8 P(6.307) D(4.615) T(0.712) E(0.708) N(-0.14) S(-0.83) Q(-0.83) K(-1.28) A(-1.52) G(-1.83) H(-1.83) R(-2.28)
M(-2.52) V(-2.52) C(-3.28) I(-3.28) Y(-3.28) L(-3.52) F(-3.83) W(-4.28)
Gap (1)
Pos 9 Q(4.307) V(2.618) I(1.618) E(1.315) K(0.331) R(0.315) M(0.165) L(-0.29) S(-0.62) T(-0.62) N(-0.66) D(-0.66)
H(-0.66) A(-0.83) Y(-1.28) P(-1.52) C(-2.14) F(-2.14) G(-2.52) W(-2.52)
Gap (1)
Pos 10 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
//

===============================
 SLIM 95
===============================
ID           Dynein_light.clust.0.2.1
Center             3e2b_AC_0
AvSimToCtr 0.552
AvRMSDToCtr 0.721 A
Size         14
NumDistinct 9
FracDDI            0
FracPeptides       0.666666666666667
FracIntra    0
Species            RATTUS NORVEGICUS (3)
Conservation       1

Members
      1cmi_AC_0 1cmi_BD_0 2p2t_AC_0 3brl_AC_0 2pg1_BL_0 2pg1_CK_0 2pg1_DJ_0 2pg1_AI_0 3dvp_AC_0 3dvp_BD_0
      1f95_AC_0 1f95_BD_0 1f96_AC_0 1f96_BD_0

Peptides
      3e2b-C 1cmi-C 2p2t-C 3dvp-C 1f95-C 1f95-D

PartnerDomains

Dist Members Intf Alignment
      3e2b_AC_0   A     T     S     A      K      A     T     Q     T     D
      1cmi_AC_0         M     K     D      T      G     I     Q     V
      2p2t_AC_0         V     Y     T      K      Q     T     Q     T     T
      2pg1_BL_0               Y     T      K      E     T     Q     T     P
      2pg1_CK_0         T     Y     T      K      E     T     Q     T
      2pg1_DJ_0         T     Y     T      K      E     T     Q     T     P
      3dvp_AC_0         T     R     D      V      A     T
      1f95_AC_0         M           D      K      S     T     Q     T
      1f95_BD_0         S     C     D      K      S     T     Q     T

Dist Members ResidueID Alignment
      3e2b_AC_0   287   288   289   290    291    292   293   294   295   296
      1cmi_AC_0         4     5     6      7      8     9     10    11
      2p2t_AC_0         127   128   129    130    131   132   133   134   135
      2pg1_BL_0               130   131    132    133   134   135   136   137
      2pg1_CK_0         129   130   131    132    133   134   135   136
        2pg1_DJ_0         129   130   131   132   133   134   135   136   137
        3dvp_AC_0         214   215   216   217   218   219
        1f95_AC_0         1           4     5     6     7     8     9
        1f95_BD_0         2     3     4     5     6     7     8     9

Alignment Occupancy       0.111 0.888 0.888 1     1     1     1     0.888 0.888 0.444
Gap in betw Columns       0     0     0     0     0     0     0

SLIM   RegEx        [TMSV][YSCRK][TDA][KTV][ESAQG][TI]Q[TV]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 21.1924032654854
SLIM   I=181997 Im=7164 Id=87 Idm=18
SLIM   PSSM p-value 6.11248383993411e-09

PSSM Listing
Pos 0 M(3.511) T(3.205) S(1.997) V(1.819) I(1.068) L(0.702) G(0.289) D(0.289)   P(0.257) Q(-0.23) N(-0.24) A(-0.41)
K(-0.42) E(-0.50) H(-0.65) F(-1.08) C(-1.11) R(-1.23) Y(-1.62) W(-2.16)
Gap (0)
Pos 1 C(6.802) Y(6.189) K(2.861) R(2.857) F(2.193) S(1.843) H(1.247) W(1.198)   Q(-0.12) N(-0.52) E(-0.53) A(-0.58)
T(-0.58) M(-1.11) L(-1.38) I(-1.46) V(-1.46) D(-1.63) G(-1.77) P(-2.08)
Gap (0)
Pos 2 D(5.195) T(3.239) A(1.838) E(1.326) S(0.670) N(0.526) G(0.393) P(0.345)   Q(-0.07) K(-0.43) H(-0.47) C(-1.21)
R(-1.32) M(-1.48) I(-2.09) L(-2.21) V(-2.32) F(-2.32) Y(-2.32) W(-3.32)
Gap (0)
Pos 3 K(4.749) T(1.925) V(1.811) R(1.756) I(0.826) E(0.806) Q(0.806) S(0.090)   N(-0.11) M(-0.46) P(-0.50) D(-0.52)
A(-0.82) L(-0.86) G(-0.88) H(-0.90) Y(-1.82) C(-2.11) F(-2.35) W(-3)
Gap (0)
Pos 4 E(3.924) G(3.813) Q(2.958) S(2.587) A(2.565) D(1.053) K(0.423) T(0.359)   N(0.135) R(-0.20) H(-0.55) P(-1.07)
M(-1.12) C(-1.13) V(-1.59) Y(-1.88) L(-1.92) I(-1.99) F(-2.43) W(-2.67)
Gap (0)
Pos 5 T(3.882) I(1.822) S(0.888) P(0.884) D(0.884) G(0.883) L(-0.06) N(-0.11)   E(-0.11) Q(-0.11) H(-0.11) K(-0.11)
M(-0.46) V(-0.86) C(-1) A(-1) R(-1.10) F(-1.46) Y(-1.82) W(-3)
Gap (0)
Pos 6 Q(4.882) E(1.882) R(0.882) K(0.882) S(-0.11) T(-0.11) N(-0.11) D(-0.11)   H(-0.11) M(-0.11) P(-1.11) A(-1.11)
Y(-1.11) G(-2.11) L(-2.11) V(-2.11) W(-2.11) C(-3.11) I(-3.11) F(-3.11)
Gap (0)
Pos 7 T(3.749) V(1.819) I(0.848) S(0.755) P(0.755) G(0.751) D(0.751) E(-0.23)   Q(-0.23) K(-0.23) N(-0.24) H(-0.24)
M(-0.53) L(-0.89) A(-0.92) C(-1.11) R(-1.23) F(-1.92) Y(-1.92) W(-3.11)
//

===============================
 SLIM 96
===============================
ID          E3_binding.clust.0.15.1
Center            2f5z_MF_0
AvSimToCtr 0.509
AvRMSDToCtr 0.704   A
Size         15
NumDistinct 4
FracDDI             0
FracPeptides        0
FracIntra    0
Species             THERMUS THERMOPHILUS HB8 (3), HOMO SAPIENS (1)
Conservation        0.75

Members
      1zy8_KA_0 2f5z_KB_0 2f5z_NH_0 2f5z_LD_0 1zy8_LC_0 1zy8_ME_0 1zy8_NG_0 2f5z_OJ_0 1zy8_OI_0 2eq8_CB_0
      2eq9_CB_0 2eq9_IH_0 2eq9_LK_0 2eq9_FE_0 2eq7_CB_0

Peptides

PartnerDomains

Dist Members Intf Alignment
      2f5z_MF_0   E     G        G      A      V      H      T      D      R      E     Y     G     A      S      E     D     R
      V     S
      2eq8_CB_0                                              T      D                   M                  T      T     D     L
      T
      2eq9_CB_0                                                                         M     G     A      T      T     D     L
      T
      2eq7_CB_0                                              T      D      R      F     F     K     A      S      E     D     R
            W

Dist Members ResidueID Alignment
      2f5z_MF_0   340   344   345       346    347    348    412    413    414    437   438   439   440    441    443   444
      447   448   467
      2eq8_CB_0                                              406    407                 432                435    437   438
      441   442
      2eq9_CB_0                                                                         432   433   434    435    437   438
      441   442
      2eq7_CB_0                                              394    395    396    419   420   421   422    423    425   426
      429         449

Alignment Occupancy       0.25   0.25   0.25   0.25   0.25   0.25   0.75   0.75   0.5   0.5   1     0.75   0.75   1     1     1
      1     0.75 0.5
Gap in betw Columns       0      0      22     0      0      0      0      1      0     2     0     18

SLIM RegEx        [FE][MFY][GK]A[ST].[TE]D..[RL][TV]
SLIM Coverage           0.75
SLIM PSSM Match Cutoff 21.3388701057747
SLIM I=181997 Im=5527 Id=48 Idm=3
SLIM PSSM p-value 0.120931795853886

PSSM Listing
Pos 0 F(4.613) E(3.614) Y(1.620) D(0.620) Q(0.620) K(-0.36) W(-0.36) H(-1.07) S(-1.25) T(-1.25) M(-1.25) N(-1.33)
R(-1.33) I(-1.33) L(-1.33) A(-2.07) V(-2.25) P(-2.33) G(-3.07) C(-3.25)
Gap (0)
Pos 1 Y(5.632) F(4.667) M(4.311) L(1.395) W(0.997) H(0.696) I(0.531) Q(-0.50) C(-1.37) S(-1.37) T(-1.37) A(-1.37)
V(-1.37) R(-1.46) K(-1.46) N(-2.17) E(-2.17) P(-2.46) G(-3) D(-3)
Gap (0)
Pos 2 G(5.307) K(3.615) R(0.649) T(0.475) S(-0.28) E(-0.29) Q(-0.29) A(-0.52) V(-0.66) N(-1.14) D(-1.28) P(-1.83)
H(-1.83) M(-2.14) W(-2.52) Y(-2.83) L(-3.14) C(-3.28) F(-3.28) I(-3.83)
Gap (0)
Pos 3 A(3.712) S(0.712) C(-0.28) G(-0.28) T(-1.28) P(-1.28) N(-1.28) E(-1.28) Q(-1.28) R(-1.28) K(-1.28) M(-1.28)
I(-1.28) L(-1.28) D(-2.28) H(-2.28) V(-2.28) F(-2.28) Y(-2.28) W(-3.28)
Gap (0)
Pos 4 S(3.355) T(3.355) G(0.620) N(0.620) D(0.620) P(0.433) A(0.433) E(0) Q(0) K(0) H(-0.37) C(-1) R(-1) M(-1) I(-2)
L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (1)
Pos 5 E(4.313) T(3.325) D(1.620) Q(1.433) S(0.620) K(0.620) P(0.433) G(0.355) N(0) H(0) R(-0.37) A(-1) M(-1.37) C(-
1.64) Y(-2) I(-2.37) L(-2.37) V(-2.37) F(-2.37) W(-3)
Gap (0)
Pos 6 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (2)
Pos 7 R(4.307) L(3.309) V(2.309) M(1.355) K(1.325) I(1.313) Q(0.355) N(-0.64) E(-0.64) H(-0.64) F(-0.64) A(-1) S(-
1.37) T(-1.37) Y(-1.37) C(-1.56) P(-2.37) W(-2.37) G(-2.56) D(-2.56)
Gap (0)
Pos 8 T(3.308) V(2.618) I(1.627) S(0.331) P(0.331) G(0.315) D(0.315) M(-0.14) L(-0.29) E(-0.62) Q(-0.62) K(-0.62)
N(-0.66) H(-0.66) A(-0.83) C(-1.28) R(-1.62) F(-1.83) Y(-1.83) W(-3.28)
//

===============================
 SLIM 97
===============================
ID           ECH.clust.0.2.0
Center             1q52_GI_0
AvSimToCtr 0.430
AvRMSDToCtr 1.268 A
Size         242
NumDistinct 37
FracDDI            0.243243243243243
FracPeptides       0
FracIntra    0
Species           HOMO SAPIENS (7), GEOBACILLUS KAUSTOPHILUS (3), STREPTOMYCES AVERMITILIS (2), THERMUS
THERMOPHILUS HB8 (2), RATTUS NORVEGICUS (2), THERMUS THERMOPHILUS (2), ERWINIA CAROTOVORA (2), PSEUDOMONAS
FLUORESCENS (2), GEOBACILLUS KAUSTOPHILUS HTA426 (2), MYCOBACTERIUM TUBERCULOSIS (2), SACCHAROMYCES CEREVISIAE (1),
BACILLUS SUBTILIS (1), RHODOCOCCUS ERYTHROPOLIS (1), ESCHERICHIA COLI (1), SALMONELLA TYPHIMURIUM (1),
MYCOBACTERIUM TUBERCULOSIS H37RV (1), ACINETOBACTER BAUMANNII ATCC 17978 (1), STREPTOMYCES TOYOCAENSIS (1)
Conservation      0.205882352941176

Members
      1dci_AC_0   1dci_CB_0   1dci_BA_0   2vre_AB_0   2vre_BC_0   2vre_CA_0   1dub_AC_0   1dub_ED_0   1dub_BA_0   1dub_FE_0
      1dub_CB_0   1dub_DF_0   2dub_AC_0   2dub_ED_0   2dub_BA_0   2dub_FE_0   2dub_CB_0   2dub_DF_0   1ey3_AC_0   1ey3_DF_0
      1ey3_BA_0   1ey3_FE_0   1ey3_ED_0   1ey3_CB_0   2hw5_BC_0   2hw5_CE_0   2hw5_DF_0   2hw5_AD_0   1mj3_AC_0   1mj3_ED_0
      1mj3_CB_0   1mj3_DF_0   1mj3_BA_0   1mj3_FE_0   2hw5_EB_0   2hw5_FA_0   3h81_AC_0   3h81_BA_0   3h81_CB_0   1ef8_AC_0
      1ef8_BA_0   1ef8_CB_0   1jxz_AC_0   1nzy_AC_0   1jxz_CB_0   1nzy_CB_0   1jxz_BA_0   1nzy_BA_0   1q51_AC_0   1q51_CB_0
      1q51_BA_0   1q51_LK_0   1q51_GI_0   1q51_KJ_0   1q51_DF_0   1q51_IH_0   1q51_ED_0   1q51_HG_0   1q51_FE_0   1q52_DF_0
      1q52_IH_0   1q52_FE_0   1q52_HG_0   1q51_JL_0   1q52_ED_0   1q52_LK_0   1q52_AC_0   1q52_KJ_0   1q52_BA_0   1q52_CB_0
      1q52_JL_0   1rjm_AC_0   1rjm_BA_0   1rjm_CB_0   1rjn_BA_0   1rjn_CB_0   1rjn_AC_0   2iex_AB_0   2iex_BC_0   2iex_CA_0
      3h02_AB_0   3h02_DE_0   3h02_FD_0   3h02_BC_0   3h02_EF_0   3h02_CA_0   2qq3_AL_0   2qq3_JI_0   2qq3_BK_0   2qq3_LE_0
      2qq3_HG_0   2qq3_DH_0   2qq3_KC_0   2qq3_EA_0   2qq3_IF_0   2qq3_GD_0   2qq3_CB_0   2qq3_FJ_0   3g64_AB_0   3g64_CA_0
      3g64_BC_0   1wz8_AB_0   1wz8_EF_0   1wz8_CA_0   1wz8_DE_0   1wz8_BC_0   1wz8_FD_0   2j5i_AC_0   2j5i_GI_0   2j5i_BA_0
      2j5i_FE_0   2j5i_KJ_0   2j5i_DF_0   2j5i_IH_0   2j5i_ED_0   2j5i_JL_0   2j5i_HG_0   2j5i_CB_0   2j5i_LK_0   2vsu_AC_0
      2vsu_BA_0   2vsu_FE_0   2vsu_DF_0   2vsu_ED_0   2vss_FE_0   2vss_BA_0   2vss_ED_0   2vss_DF_0   2vsu_CB_0   2vss_AC_0
      2vss_CB_0   2vx2_AB_0   2vx2_BC_0   2vx2_CA_0   2vx2_DE_0   2vx2_EF_0   2vx2_FD_0   2vx2_GH_0   2vx2_IG_0   2vx2_HI_0
      2f6q_AB_0   2f6q_CA_0   2f6q_BC_0   3fdu_AC_0   3fdu_DF_0   3fdu_FE_0   3fdu_BA_0   3fdu_ED_0   3fdu_CB_0   2fbm_AC_0
      2fw2_AC_0   2fw2_FE_0   2fw2_BA_0   2fw2_ED_0   2fw2_DF_0   2fw2_CB_0   2fbm_BA_0   2fbm_CB_0   2gtr_AB_0   2gtr_BC_0
      2gtr_CA_0   1pjh_AB_0   1pjh_BC_0   1pjh_CA_0   2ppy_AC_0   2ppy_CE_0   2ppy_DF_0   2ppy_EA_0   2ppy_BD_0   2ppy_FB_0
      2zqq_AC_0   2zqq_BA_0   2zqq_DF_0   2zqq_ED_0   2zqq_FE_0   2zqr_ED_0   2zqr_FE_0   2zqr_BA_0   2zqr_AC_0   2zqr_CB_0
      3gkb_AB_0   3gkb_BC_0   3gkb_CA_0   3h0u_AB_0   3h0u_BC_0   3h0u_CA_0   1o8u_AC_0   1o8u_BA_0   1o8u_EF_0   1o8u_DE_0
      1o8u_CB_0   1o8u_FD_0   1szo_AC_0   1szo_LJ_0   1szo_FD_0   1szo_BA_0   1szo_IH_0   1szo_KL_0   1szo_GI_0   1szo_HG_0
      1szo_CB_0   1szo_JK_0   1szo_DE_0   1szo_EF_0   2j5g_AC_0   2j5g_EF_0   2j5g_IH_0   2j5g_DE_0   2j5g_JK_0   2j5g_KL_0
      2j5g_GI_0   2j5g_HG_0   2j5g_BA_0   2j5g_FD_0   2j5g_LJ_0   2j5g_CB_0   2a7k_AB_0   2a7k_BC_0   2a7k_EF_0   2a7k_HI_0
      2a7k_CA_0   2a7k_DE_0   2a7k_GH_0   2a7k_FD_0   2a7k_IG_0   3he2_AC_0   3he2_BA_0   3he2_CB_0   3hrx_AC_0   3hrx_BA_0
      3hrx_ED_0   3hrx_CB_0   3hrx_DF_0   3hrx_FE_0   3hp0_DF_0   3hp0_EA_0   2np9_AC_0   2np9_BA_0   2np9_CB_0   2pg8_BA_0
      2pg8_AC_0   2pg8_CB_0

Peptides

PartnerDomains
      ECH (1q52_GI_0,2iex_AB_0,3h02_AB_0,3g64_AB_0,1wz8_AB_0,1wz8_BC_0,2fw2_AC_0,2gtr_AB_0,2a7k_BC_0)
      APS_kinase (3g64_AB_0)

Dist Members Intf Alignment
      1q52_GI_0   A     V         G       Q     K       F     R       E       F     L       Q
      1dci_AC_0                           R     S       L     N       E       F
      2vre_AB_0                           Q     S       L     N       E       F
      1dub_AC_0         V         G       K     S       L     M       E       L             Q
      3h81_AC_0         I     G     K     A     K     M     D     L     T
      1ef8_AC_0               G     F     H     I     K     E     F
      1jxz_AC_0         V     G     M     R     R     M     E     L     T     D
      2iex_AB_0   A     V     G     H     K     K     R     E     Y     L
      3h02_AB_0   A     V     G     Q     K     K     R     E     F     L
      2qq3_AL_0               G     P     K     R     L     E
      2qq3_JI_0               G     P     K     R     L     E     W
      3g64_AB_0   P     V     G     L     G     H     T     R           L     R
      1wz8_AB_0   P     V     G     M     A     K     K     Y     L     L
      1wz8_BC_0   P     V     G     M     A     K     K     Y     L     L     R
      2j5i_AC_0                     H     R     Q     L     Y     M     T
      2j5i_BA_0                     H     R     Q     L     M     M
      2vx2_AB_0                     R     K     V     L     E     F     T     L
      2f6q_AB_0               S     P     A     K     T     E     I     F
      3fdu_AC_0         A     G     Y     H     K     A     E     F     T
      2fbm_AC_0         M     G     K     A     S     N     E     I
      2fw2_AC_0   P     M     G     K     A     S     N     E     I     A
      2gtr_AB_0   P     M     G     G     A     S     N     E     L     S
      1pjh_AB_0                     T     N     T     Y     E     M     F
      2ppy_AC_0                           S     R     L     D
      2ppy_CE_0                           S     R     L     D     I
      2zqq_AC_0                           S     L     K     E     F
      3gkb_AB_0                     R     N     R     L     E     L     T
      3h0u_AB_0               G     R     G     R     L     E     L     T     R
      1o8u_AC_0                     S     N     R     R     Y     L     T     D
      2j5g_AC_0         L           L     Y     R     R     Y     F     T
      2a7k_AB_0               G     F     S     T     Q     E     Y     Q     D
      2a7k_BC_0   G           F           S     T     Q     E     Y     Q     D
      3he2_AC_0               G     H     G     R     R     A     L     S     H
      3hrx_AC_0                     L           K     Q     E     L     L
      3hrx_BA_0               G     L     A     K     Q     E     L     L
      3hp0_DF_0                                 K     H     Y     L
      2np9_AC_0               G     P     R           R     Q     L     E

Dist Members ResidueID Alignment
      1q52_GI_0   201   204   205   206   207   208   210   211   214   215   226
      1dci_AC_0                     218   219   220   222   223   226
      2vre_AB_0                     193   194   195   197   198   201
      1dub_AC_0         183   184   185   186   187   189   190   193         205
      3h81_AC_0         171   172   173   174   175   177   178   181   182
      1ef8_AC_0               153   154   155   156   158   159   162
      1jxz_AC_0         156   157   158   159   160   162   163   166   167   178
      2iex_AB_0   159   162   163   164   165   166   168   169   172   173
      3h02_AB_0   172   175   176   177   178   179   181   182   185   186
      2qq3_AL_0               152   153   154   155   157   158
        2qq3_JI_0               152   153   154   155   157   158   161
        3g64_AB_0   165   168   169   170   171   172   174   175         179   190
        1wz8_AB_0   157   160   161   162   163   164   166   167   170   171
        1wz8_BC_0   157   160   161   162   163   164   166   167   170   171   182
        2j5i_AC_0                     164   165   166   168   169   172   173
        2j5i_BA_0                     164   165   166   168   169   172
        2vx2_AB_0                     196   197   198   200   201   204   205   216
        2f6q_AB_0               262   263   264   265   267   268   271   272
        3fdu_AC_0         161   162   163   164   165   167   168   171   172
        2fbm_AC_0         436   437   438   439   440   442   443   446
        2fw2_AC_0   153   156   157   158   159   160   162   163   166   167
        2gtr_AB_0   154   157   158   159   160   161   163   164   167   168
        1pjh_AB_0                     171   172   173   175   176   179   180
        2ppy_AC_0                           161   162   164   165
        2ppy_CE_0                           161   162   164   165   168
        2zqq_AC_0                           231   232   234   235   238
        3gkb_AB_0                     163   164   165   167   168   171   172
        3h0u_AB_0               165   166   167   168   170   171   174   175   186
        1o8u_AC_0                     166   167   168   170   171   174   175   186
        2j5g_AC_0         163         165   166   167   169   170   173   174
        2a7k_AB_0               150   151   152   153   155   156   159   160   171
        2a7k_BC_0   150         151         152   153   155   156   159   160   171
        3he2_AC_0               143   144   145   146   148   149   152   153   164
        3hrx_AC_0                     149         151   153   154   157   158
        3hrx_BA_0               148   149   150   151   153   154   157   158
        3hp0_DF_0                                 159   161   162   165
        2np9_AC_0               338   339   340         343   344   347   348

Alignment Occupancy       0.243 0.378 0.621 0.864 0.945 0.972 1     1     0.918 0.675 0.297
Gap in betw Columns       0     0     0     1     0     2     0

SLIM   RegEx        [GFS][PKHRLQMFSTYG][ASKRNGHY][KRLSTQFVHI].[LRNKQMTAYH][EYDAQMR]..[LFIMYW][TLSFQAE]
SLIM   Coverage           0.972972972972973
SLIM   PSSM Match Cutoff 26.6870929243658
SLIM   I=181997 Im=5546 Id=53 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 G(5.433) F(2.392) S(0.716) T(0.482) A(-0.43) V(-0.54) Y(-0.55) D(-1.43) N(-1.88) W(-1.88) E(-2.25) Q(-2.25)
K(-2.25) H(-2.33) R(-2.42) P(-2.43) M(-2.72) C(-3.17) I(-3.19) L(-3.19)
Gap (0)
Pos 1 H(5.776) P(4.777) Y(3.455) F(3.118) R(2.848) K(2.847) M(2.573) Q(2.559) G(2.405) L(1.890) T(0.836) V(0.831)
S(0.662) E(0.206) I(0.110) N(-0.27) D(-0.52) W(-0.83) A(-1.03) C(-2.06)
Gap (0)
Pos 2 H(5.085) N(3.520) G(3.504) Y(3.406) K(3.229) R(2.865) S(2.558) A(2.533)   T(0.205) Q(0.170) E(-0.00) D(-0.33)
F(-0.44) C(-1.12) M(-1.23) P(-1.33) W(-1.36) V(-1.74) L(-1.81) I(-1.96)
Gap (0)
Pos 3 H(4.395) K(3.748) R(3.746) F(2.407) Q(2.272) L(1.841) T(1.633) S(1.630)   V(1.332) I(1.063) E(0.473) M(0.253)
N(-0.02) Y(-0.08) D(-0.56) A(-0.59) P(-0.86) G(-0.93) C(-1.87) W(-1.98)
Gap (1)
Pos 4 H(4.397) N(4.008) Y(3.403) R(3.381) K(2.891) Q(2.845) M(2.646) L(2.636)   V(1.600) T(1.245) I(0.729) A(0.581)
E(0.428) S(-0.05) F(-0.08) D(-0.25) G(-0.97) P(-1.17) W(-1.19) C(-1.61)
Gap (0)
Pos 5 Y(5.181) E(4.576) D(3.625) Q(2.203) R(1.565) M(1.437) F(1.202) K(0.745)   H(0.661) A(0.574) W(0.221) N(-0.04)
T(-0.05) S(-0.13) L(-1.16) P(-1.19) I(-1.70) G(-1.82) V(-2.22) C(-2.55)
Gap (2)
Pos 6 W(7.389) F(4.609) Y(4.545) L(3.106) M(2.734) I(2.218) V(2.082) H(-0.31)   C(-1.36) A(-1.37) Q(-1.69) S(-1.95)
T(-1.95) R(-2.19) K(-2.19) E(-2.81) N(-2.83) P(-3.11) D(-3.41) G(-3.41)
Gap (0)
Pos 7 F(3.094) T(2.606) L(2.478) Q(2.147) E(1.554) V(1.485) S(1.335) A(0.603)   M(0.603) I(0.534) Y(0.209) D(-0.02)
G(-0.27) P(-0.31) K(-0.58) N(-0.70) H(-0.97) R(-1.12) C(-1.48) W(-1.60)
//

===============================
 SLIM 98
===============================
ID           EGF.clust.0.15.6
Center             2w2p_EA_0
AvSimToCtr 0.747
AvRMSDToCtr 0.272 A
Size         7
NumDistinct 5
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (5)
Conservation       1

Members
      2w2m_EA_0 2w2n_EA_0 3bps_EA_0 3gcw_EA_0 3gcx_EA_0 2w2o_EA_0 2w2q_EA_0

Peptides

PartnerDomains
      Peptidase_S8 (2w2p_EA_0,2w2m_EA_0,2w2n_EA_0,2w2o_EA_0,2w2q_EA_0)

Dist Members Intf Alignment
      2w2p_EA_0   S     I     P       R   D     A     I     S     A      C      T     C     F     V     S
      2w2m_EA_0         I     P       R   D     A     I     S     D      C      T     C     F     V     S
       2w2n_EA_0   S     I     P     R      D     A     I     S     D     C     T     C     F     V     S
       2w2o_EA_0         I     P     R      D     A     I     S     Y     C     T     C     F     V     S
       2w2q_EA_0         I     P     R      D     A     I     S     H     C     T     C     F     V     S

Dist Members ResidueID Alignment
      2w2p_EA_0   153   154   155    194    238   239   369   372   374   375   377   378   379   380   381
      2w2m_EA_0         154   155    194    238   239   369   372   374   375   377   378   379   380   381
      2w2n_EA_0   153   154   155    194    238   239   369   372   374   375   377   378   379   380   381
      2w2o_EA_0         154   155    194    238   239   369   372   374   375   377   378   379   380   381
      2w2q_EA_0         154   155    194    238   239   369   372   374   375   377   378   379   380   381

Alignment Occupancy      0.4   1     1      1     1     1     1     1     1     1     1     1     1     1     1
Gap in betw Columns      0     25,28 35     0     129   2     1     0     1     0     0     0     0

SLIM   RegEx        I..S.[DHAY]C.TCFVS
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 19.8648397251632
SLIM   I=181997 Im=7284 Id=265 Idm=17
SLIM   PSSM p-value 0.0180137191996778

PSSM Listing
Pos 0 I(4) L(2) M(1) V(1) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) P(-3) N(-3) D(-3) E(-3) Q(-3) H(-3) R(-3) K(-3) W(-3)
G(-4)
Gap (2)
Pos 1 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (1)
Pos 2 H(6.393) Y(5.397) D(5.087) A(2.400) F(1.420) E(1.180) N(0.549) W(0.420) T(0.327) S(0.043) Q(-0.29) G(-0.95)
R(-1.03) K(-1.13) P(-1.35) C(-1.35) M(-1.63) I(-1.73) L(-1.80) V(-1.91)
Gap (0)
Pos 3 C(9) A(0) S(-1) T(-1) M(-1) I(-1) L(-1) V(-1) F(-2) Y(-2) W(-2) P(-3) G(-3) N(-3) D(-3) Q(-3) H(-3) R(-3) K(-
3) E(-4)
Gap (1)
Pos 4 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 5 C(9) A(0) S(-1) T(-1) M(-1) I(-1) L(-1) V(-1) F(-2) Y(-2) W(-2) P(-3) G(-3) N(-3) D(-3) Q(-3) H(-3) R(-3) K(-
3) E(-4)
Gap (0)
Pos 6 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 7 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (0)
Pos 8 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
//
===============================
 SLIM 99
===============================
ID           ELFV_dehydrog_N.clust.0.2.3
Center             1euz_EF_0
AvSimToCtr 0.580
AvRMSDToCtr 0.799 A
Size         24
NumDistinct 5
FracDDI            0.4
FracPeptides       0
FracIntra    0
Species            BOS TAURUS (1), CLOSTRIDIUM SYMBIOSUM (1), THERMOCOCCUS PROFUNDUS (1), PLASMODIUM FALCIPARUM (1),
PYROCOCCUS FURIOSUS (1)
Conservation       0.2

Members
      1bvu_AB_0 1bvu_EF_0 1bvu_BC_0 1bvu_FD_0 1bvu_CA_0 1bvu_DE_0 1gtm_AB_0 1gtm_BC_0 1gtm_CA_0 1euz_AB_0
      1euz_FD_0 1euz_BC_0 1euz_CA_0 1euz_DE_0 1hrd_AC_0 1hrd_CB_0 1hrd_BA_0 2bma_AC_0 2bma_CF_0 2bma_FA_0
      2bma_BE_0 2bma_DB_0 2bma_ED_0 3etd_ED_0

Peptides

PartnerDomains
      ELFV_dehydrog_N (1hrd_AC_0,2bma_AC_0)
      ELFV_dehydrog (1hrd_AC_0,2bma_AC_0)
      DUF407 (1hrd_AC_0)

Dist Members Intf   Alignment
      1euz_EF_0     W     K     D   R     G     W     K
      1gtm_AB_0     W     L     D   R     G     W     K
      1hrd_AC_0     G     M     A   Q     G
      2bma_AC_0     S     I     E   Q     G
      3etd_ED_0           E     A         G     V     F

Dist Members ResidueID Alignment
      1euz_EF_0   63    412   413   414   415   416   418
      1gtm_AB_0   62    412   413   414   415   416   418
      1hrd_AC_0   83    443   444   445   446
      2bma_AC_0   83    443   444   445   446
      3etd_ED_0         495   496         497   498   500

Alignment Occupancy       0.8   1   1     0.8   1     0.6   0.6
Gap in betw Columns       348,359   0     0     0     0     1
SLIM   RegEx        [MIKEL][ADE][QR]G[WV].[KF]
SLIM   Coverage           0.6
SLIM   PSSM Match Cutoff 21.0950184951817
SLIM   I=181997 Im=4368 Id=24 Idm=1
SLIM   PSSM p-value 0.329466634934445

PSSM Listing
Pos 0 M(3.459) K(3.412) E(3.410) L(2.632) I(2.561) V(1.527) Q(0.814) R(0.581) D(0.454) F(-0.47) S(-0.63) T(-0.63)
N(-0.80) A(-1) H(-1.13) Y(-1.29) C(-1.45) P(-1.63) W(-2.03) G(-2.63)
Gap (0)
Pos 1 D(5.093) E(3.489) A(3.089) Q(0.705) S(0.523) T(0.360) N(0.360) K(-0.17) G(-0.55) C(-0.85) H(-0.91) R(-0.91)
P(-1) M(-1.63) I(-1.73) L(-1.80) Y(-2.29) V(-2.47) F(-2.47) W(-3.29)
Gap (0)
Pos 2 Q(4.101) R(4.101) K(1.396) E(1.210) N(-0.22) H(-0.22) S(-0.60) T(-0.60) M(-0.60) D(-0.78) A(-1.22) P(-1.60)
Y(-1.60) G(-2.22) L(-2.22) V(-2.60) W(-2.60) C(-3.22) I(-3.22) F(-3.22)
Gap (0)
Pos 3 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 4 W(10.08) V(2.392) I(1.395) Y(1.108) F(0.149) M(-0.36) L(-0.51) A(-1.51) C(-2.05) Q(-2.51) G(-2.74) H(-2.74)
S(-3.05) T(-3.05) E(-3.05) K(-3.05) P(-3.36) R(-3.51) N(-4.05) D(-4.05)
Gap (1)
Pos 5 F(4.390) K(4.083) Y(1.403) R(1.087) E(0.092) Q(0.092) W(-0.57) S(-0.85) T(-0.85) N(-0.89) M(-1.05) L(-1.36)
H(-1.51) I(-1.51) A(-1.74) D(-1.85) P(-1.89) V(-2.36) G(-2.74) C(-3.05)
//

===============================
 SLIM 100
===============================
ID           ELFV_dehydrog_N.clust.0.25.1
Center             3etg_CF_0
AvSimToCtr 0.503
AvRMSDToCtr 0.743 A
Size         71
NumDistinct 8
FracDDI            0
FracPeptides       0
FracIntra    0
Species            BOS TAURUS (2), PYROBACULUM ISLANDICUM (2), THERMOCOCCUS LITORALIS (1), THERMOCOCCUS PROFUNDUS
(1), PLASMODIUM FALCIPARUM (1), THERMOTOGA MARITIMA (1)
Conservation       0.25

Members
      1b26_AF_0 1b26_FA_0 1b26_BE_0 1b26_CD_0 1b26_EB_0 1b26_DC_0 2tmg_AF_0 2tmg_FA_0 2tmg_BE_0 2tmg_CD_0
        2tmg_DC_0   2tmg_EB_0   1v9l_AF_0   1v9l_CD_0   1v9l_DC_0   1v9l_FA_0   1v9l_BE_0   1v9l_EB_0   1bvu_AF_0   1bvu_DC_0
        1bvu_FA_0   1bvu_CD_0   1bvu_EB_0   1bvu_BE_0   1euz_AF_0   1euz_BE_0   1euz_FA_0   1euz_CD_0   1euz_DC_0   1euz_EB_0
        2bma_AE_0   2bma_CB_0   2bma_FD_0   2bma_BC_0   2bma_EA_0   2bma_DF_0   1hwx_AD_0   1hwx_DA_0   1hwx_EB_0   1hwx_BE_0
        1hwx_FC_0   1hwx_CF_0   3ete_AD_0   3ete_EB_0   3ete_BE_0   3ete_DA_0   3ete_CF_0   3ete_FC_0   3etd_AD_0   3etd_CF_0
        3etd_FC_0   3etd_DA_0   3etd_BE_0   3etd_EB_0   3etg_AD_0   3etg_FC_0   3etg_EB_0   3etg_BE_0   3etg_DA_0   1hwz_AD_0
        1hwz_BE_0   1hwz_FC_0   1hwz_CF_0   1hwz_DA_0   1hwz_EB_0   1l1f_AE_0   1l1f_EA_0   1l1f_BD_0   1l1f_DB_0   1l1f_CF_0
        1l1f_FC_0

Peptides

PartnerDomains

Dist Members Intf    Alignment
      3etg_CF_0      G     R        I       P     C       N     H       V       L     S       L     S       Q       Q      E      K       K
      G     F        T
      1b26_AF_0            E        V       R     P       K     R       V       L     I       V     E                      E
      1v9l_AF_0      D     K        I       R     P       R     R       V       L     I       V     N
      1v9l_BE_0      D     K        I       R     P       R     R       V       L     I       V     N                      A
      1bvu_AF_0      E     E        F       R     P       Q     R       I       V     E       V     S                      A
      1euz_AF_0      E     E        W       K     P       M     R       I       V     E       V     S                      A
      2bma_AE_0                             E     P       E     R       A       I     Q       F     R                      E
      1hwx_AD_0       G     R       I       P     C       N     H       V       L     S       L     S       Q       H      E      K       K
      G     F

Dist Members ResidueID Alignment
      3etg_CF_0   47    50    51            54    55      56    57      58      59    60      61    62      81      84     151    154
      155   156   157   501
      1b26_AF_0         28    29            32    33      34    35      36      37    38      39    40                     129
      1v9l_AF_0   26    29    30            33    34      35    36      37      38    39      40    41
      1v9l_BE_0   26    29    30            33    34      35    36      37      38    39      40    41                     130
      1bvu_AF_0   25    28    29            32    33      34    35      36      37    38      39    40                     129
      1euz_AF_0   26    29    30            33    34      35    36      37      38    39      40    41                     130
      2bma_AE_0                             53    54      55    56      57      58    59      60    61                     150
      1hwx_AD_0   47    50    51            54    55      56    57      58      59    60      61    62      81      84     151    154
      155   156   157

Alignment Occupancy         0.75    0.875 0.875 1         1     1       1       1     1       1     1       1       0.25   0.25   0.875
      0.25 0.25 0.25        0.25    0.125
Gap in betw Columns         2       0     2     0         0     0       0       0     0       0     0       88

SLIM   RegEx        [DGE]..[EKR][IFWV]..[RPKE][PC][NRQMKE][RH][VIA][LVI][ISEQ][VLF][SNRE]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 28.7029890586594
SLIM   I=181997 Im=4815 Id=24 Idm=2
SLIM   PSSM p-value 0.107101007796505
PSSM Listing
Pos 0 D(4.632) G(4.614) E(3.663) Q(0.756) T(0.475) N(-0.03) K(-0.21) S(-0.28) A(-0.97) H(-0.97) R(-1.14) V(-1.29)
P(-1.52) M(-2.83) Y(-2.83) W(-2.97) F(-3.28) C(-3.52) I(-3.52) L(-3.83)
Gap (2)
Pos 1 E(4.035) K(3.688) R(3.671) Q(1.418) D(1.063) N(-0.13) S(-0.33) T(-0.33) H(-0.33) A(-1.13) P(-1.33) M(-1.44)
G(-2.13) Y(-2.13) L(-2.44) I(-3.13) V(-3.13) F(-3.13) W(-3.13) C(-3.44)
Gap (0)
Pos 2 W(8.920) F(3.937) I(3.399) V(2.108) L(1.429) Y(1.298) M(0.625) A(-1.10) C(-1.33) S(-2.22) T(-2.22) H(-2.36)
Q(-2.73) E(-2.91) K(-2.91) P(-3.07) R(-3.13) N(-3.22) D(-3.22) G(-3.25)
Gap (2)
Pos 3 P(5.614) R(4.321) K(3.121) E(2.969) Q(0.998) D(0.121) T(0.107) N(-0.17) H(-0.34) S(-0.64) A(-1) M(-1.27) G(-2)
Y(-2.17) L(-2.27) V(-2.64) I(-3) C(-3.08) F(-3.17) W(-3.17)
Gap (0)
Pos 4 C(7.613) P(6.712) T(0.756) A(-0.64) S(-1) N(-1.24) D(-1.24) Q(-1.24) K(-1.24) E(-1.27) M(-1.64) V(-1.64) I(-
2.04) L(-2.04) G(-2.17) H(-2.17) R(-2.17) Y(-2.64) F(-3.04) W(-3.04)
Gap (0)
Pos 5 N(4.620) R(3.658) K(3.062) Q(3.038) E(3.012) M(2.937) D(0.595) S(0.176) L(0.009) T(-0.27) H(-0.42) I(-0.95)
G(-1.07) A(-1.17) P(-1.50) Y(-1.64) F(-1.78) W(-2.38) C(-2.45) V(-2.64)
Gap (0)
Pos 6 H(6.614) R(4.714) K(1.728) Q(0.827) Y(0.667) N(0.357) E(0) D(-0.24) T(-0.64) S(-1) A(-1.17) M(-1.17) P(-2)
G(-2) F(-2.04) L(-2.17) V(-2.64) W(-2.64) C(-3) I(-3)
Gap (0)
Pos 7 V(3.550) I(3.267) A(2.020) L(1.278) M(0.885) F(-0.69) S(-0.78) C(-0.80) Y(-1.08) T(-1.80) G(-1.82) P(-1.94)
E(-1.94) Q(-1.94) K(-1.94) N(-2.41) R(-2.41) D(-2.80) H(-2.80) W(-3)
Gap (0)
Pos 8 L(3.575) V(3.278) I(2.801) M(1.729) F(-0.17) A(-0.64) C(-1) Y(-1) S(-2) T(-2) Q(-2.08) K(-2.08) R(-2.27) W(-
2.27) P(-2.64) E(-2.64) N(-3) H(-3) D(-3.50) G(-3.64)
Gap (0)
Pos 9 E(3.645) Q(3.028) I(3.021) S(2.644) L(1.041) D(0.806) K(0.253) M(0.239) T(0.100) V(0.079) N(0.070) A(-0.04)
R(-0.35) H(-0.72) F(-0.84) G(-1.17) Y(-1.37) P(-1.39) C(-1.42) W(-2.80)
Gap (0)
Pos 10 F(3.930) V(3.668) L(2.739) I(2.675) M(1.300) Y(1.041) A(-0.30) W(-0.90) C(-1.08) S(-2) T(-2) Q(-2.08) K(-
2.08) E(-2.27) P(-2.30) H(-2.41) R(-2.64) N(-3) G(-3.17) D(-3.17)
Gap (0)
Pos 11 N(4.629) S(3.337) E(2.966) R(2.950) D(0.751) K(0.699) Q(0.699) T(0.576) A(0.395) G(-0.24) H(-0.64) P(-1.27)
M(-1.27) C(-1.58) Y(-2) L(-2.27) I(-2.37) V(-2.37) F(-2.37) W(-3.17)
//

===============================
 SLIM 101
===============================
ID          Ecotin.clust.0.2.2
Center            1xx9_DA_0
AvSimToCtr 0.619
AvRMSDToCtr 0.495   A
Size         10
NumDistinct 4
FracDDI             1
FracPeptides        0
FracIntra    0
Species             RATTUS NORVEGICUS (2), HOMO SAPIENS (1), UCA PUGILATOR (1)
Conservation        0.5

Members
      1azz_CB_0 1azz_DA_0 1ezu_AC_0 1ezu_BD_0 1fi8_EA_0 1xx9_CB_0 1xxd_DA_0 1xxf_CB_0 1xxf_DA_0 1xxd_CB_0

Peptides

PartnerDomains
      Trypsin (1xx9_DA_0,1azz_CB_0,1ezu_AC_0,1fi8_EA_0)

Dist Members Intf   Alignment
      1xx9_DA_0     H     D     Q     Y     K      Y      K     R      K      V     E     Y     V     D     W     E     K
      1azz_CB_0     H     E     N     Y            N                          T     Y     F     L     D     W     T     Q
      1ezu_AC_0     H     P     N     F            N                          C     N     Y     V     D     W     D
      1fi8_EA_0     H     P     A                  N                   N      S     T     F     L     S     W     K

Dist Members ResidueID Alignment
      1xx9_DA_0   91    92    93      94    95     101    127   130    179    232   233   234   235   236   237   240
      241
      1azz_CB_0   91    92    93      94           101                        232   233   234   235   236   237   240
      241
      1ezu_AC_0   491   492   493     494          501                        632   633   634   635   636   637   640
      1fi8_EA_0   91    92    93                   101                 179    232   233   234   235   236   237   240

Alignment Occupancy       1     1     1     0.75   0.25   1     0.25   0.25   0.5   1     1     1     1     1     1     1
      0.5
Gap in betw Columns       0     0     0     6      75,76 46     0      0      0     0     0     2     0

SLIM   RegEx        [STCV][TNYE][FY][LV][DS]W..[TDKE][QK]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 24.2099185223961
SLIM   I=181997 Im=6113 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 C(7.613) S(2.671) T(2.671) V(2.625) I(1.645) A(0.240) M(-0.04) G(-0.04) N(-0.04) D(-0.04) L(-0.17) P(-0.20)
Q(-0.60) K(-0.60) E(-0.61) H(-1.00) R(-1.56) F(-1.64) Y(-1.64) W(-2.64)
Gap (0)
Pos 1 Y(5.614) N(4.618) E(3.627) T(2.652) F(1.625) D(1.169) Q(0.891) H(0.891) W(0.629) S(0.496) K(0.193) G(-0.02)
P(-0.20) R(-0.46) A(-1.37) M(-1.37) I(-1.89) L(-1.89) V(-1.89) C(-1.94)
Gap (0)
Pos 2 Y(6.325) F(5.355) W(1.620) H(1.355) M(-0.37) I(-0.37) L(-0.37) V(-1) Q(-1.56) C(-2) S(-2) T(-2) A(-2) N(-2.37)
E(-2.37) R(-2.37) K(-2.37) G(-3) D(-3) P(-3.37)
Gap (0)
Pos 3 V(3.620) L(3.355) I(2.620) M(1.620) A(-0.37) F(-0.37) C(-1) Y(-1) S(-2) T(-2) Q(-2) K(-2) P(-2.37) E(-2.37)
R(-2.37) W(-2.37) N(-3) H(-3) G(-3.37) D(-3.37)
Gap (0)
Pos 4 D(5.713) S(2.667) E(1.756) T(1) N(1) Q(0) A(-0.24) G(-0.64) K(-0.64) P(-1) H(-1) R(-1.64) C(-2.04) M(-2.04)
I(-2.64) V(-2.64) F(-2.64) Y(-2.64) L(-3.04) W(-3.64)
Gap (0)
Pos 5 W(11) Y(2) F(1) M(-1) C(-2) G(-2) Q(-2) H(-2) L(-2) S(-3) T(-3) A(-3) E(-3) R(-3) K(-3) I(-3) V(-3) P(-4) N(-
4) D(-4)
Gap (2)
Pos 6 D(4.639) E(3.685) K(3.640) T(2.696) Q(1.107) R(0.798) S(0.357) N(0.357) P(-0.04) G(-0.17) H(-0.37) A(-1.17)
M(-1.46) C(-2.10) Y(-2.17) L(-2.46) I(-2.64) V(-2.64) F(-2.64) W(-3.17)
Gap (0)
Pos 7 Q(3.631) K(3.631) E(0.926) R(0.926) S(-0.69) T(-0.69) N(-0.69) D(-1.07) H(-1.07) M(-1.07) P(-1.69) A(-1.69)
Y(-2.07) G(-2.69) L(-2.69) V(-3.07) W(-3.07) C(-3.69) I(-3.69) F(-3.69)
//

===============================
 SLIM 102
===============================
ID           Enolase_N.clust.0.15.0
Center             1l8p_AB_0
AvSimToCtr 0.688
AvRMSDToCtr 0.409 A
Size         47
NumDistinct 9
FracDDI            0.444444444444444
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (4), METHANOCOCCUS JANNASCHII (1), ENTEROCOCCUS HIRAE (1), ESCHERICHIA COLI (1),
STREPTOCOCCUS PNEUMONIAE (1), SACCHAROMYCES CEREVISIAE (1)
Conservation       0.444444444444444

Members
      1e9i_AB_0   1e9i_BA_0   1e9i_CD_0   1e9i_DC_0   2fym_AC_0   2fym_CA_0   2fym_DF_0   2fym_FD_0   1ebg_AB_0   1ebg_BA_0
      1one_BA_0   1ebh_AB_0   1ebh_BA_0   1l8p_CD_0   1l8p_BA_0   1l8p_DC_0   1p43_AB_0   1p48_AB_0   2al1_AB_0   2al2_AB_0
      2al1_BA_0   2al2_BA_0   1one_AB_0   1p43_BA_0   1p48_BA_0   2one_AB_0   2one_BA_0   1te6_AB_0   2akm_AB_0   1te6_BA_0
      2akm_BA_0   2akz_AB_0   2akz_BA_0   2psn_AB_0   3b97_AB_0   2psn_DC_0   3b97_DC_0   2psn_BA_0   3b97_BA_0   2psn_CD_0
      3b97_CD_0   1iyx_AB_0   1iyx_BA_0   1w6t_AB_0   1w6t_BA_0   2pa6_AB_0   2pa6_BA_0
Peptides

PartnerDomains
      Enolase_C (1l8p_AB_0,1e9i_AB_0,2akz_AB_0,2psn_DC_0)

Dist Members Intf   Alignment
      1l8p_AB_0     A     L     R   S      E      Y      H      N      P      A      R      S      L      N      Q      L      R
      E
      1e9i_AB_0     K     I     R   S      E      F      H      H      M      S      R      S      V      N             I      R
      E
      1te6_AB_0     R     M     R   A      E      Y      H             P      C      R      S      L      N      Q      M      R
      E
      2akz_AB_0     R     M     R   A      E      Y      H      T      P      C      R      S      L      N      Q      M      R
      E
      2psn_AB_0     R     M     R   A      E      Y      H             P      C      R      S      L      N      Q      L      R
      E
      2psn_DC_0     R     M     R   A      E      Y      H      N      P      C      R      S      L      N      Q      L      R
      E
      1iyx_AB_0     K     L     R   A      E      F      H             L      S      R      T      I      N             L      R
      D
      1w6t_AB_0     K     L     R   A      E      F      H                    S      R      T      I      N      Q      L      R
      D
      2pa6_AB_0           V     R   S      E      Y      H             P      A      R      G      T      N             I      R
      Q

Dist Members ResidueID Alignment
      1l8p_AB_0   680   683   684   687    688    690    691    692    900    901    902    903    906    910    911    913
      914   917
      1e9i_AB_0   179   182   183   186    187    189    190    191    396    397    398    399    402    406           409
      410   413
      1te6_AB_0   178   181   182   185    186    188    189           397    398    399    400    403    407    408    410
      411   414
      2akz_AB_0   1178 1181 1182    1185   1186   1188   1189   1190   1397   1398   1399   1400   1403   1407   1408   1410
      1411 1414
      2psn_AB_0   178   181   182   185    186    188    189           397    398    399    400    403    407    408    410
      411   414
      2psn_DC_0   178   181   182   185    186    188    189    190    397    398    399    400    403    407    408    410
      411   414
      1iyx_AB_0   175   178   179   182    183    185    186           394    395    396    397    400    404           407
      408   411
      1w6t_AB_0   176   179   180   183    184    186    187                  399    400    401    404    408    409    411
      412   415
      2pa6_AB_0         185   186   189    190    192    193           394    395    396    397    400    404           407
      408   411
Alignment Occupancy       0.888 1     1     1     1     1     1     0.444 0.888 1   1    1     1     1     0.666 1
      1     1
Gap in betw Columns       2     0     2     0     1     0     200,208     0     0   0    2     3     0     1     0
      2

SLIM   RegEx        [PML][CSA]R[STG]..[LITV].{3}NQ.[LMI]R..[EDQ]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 22.4443492643529
SLIM   I=181997 Im=8406 Id=51 Idm=3
SLIM   PSSM p-value 0.212055122659875

PSSM Listing
Pos 0 P(6.594) M(2.856) L(1.934) V(0.848) T(0.624) I(0.145) Q(-0.99) A(-1.11) S(-1.20) K(-1.20) N(-1.32) E(-1.32)
D(-1.37) F(-1.45) R(-1.92) C(-2.16) Y(-2.16) H(-2.20) G(-2.32) W(-2.68)
Gap (0)
Pos 1 C(8.189) S(2.942) A(2.601) T(0.140) N(0.009) G(-0.54) Q(-0.82) K(-0.82) E(-0.85) D(-0.95) M(-1) I(-1.23) L(-
1.23) V(-1.43) P(-1.48) R(-1.48) H(-1.74) F(-2) Y(-2) W(-2.43)
Gap (0)
Pos 2 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 3 G(3.830) S(3.613) T(2.656) N(0.717) A(0.695) D(0.271) E(-0.10) Q(-0.10) K(-0.10) P(-0.14) H(-0.72) R(-1.07)
C(-1.10) M(-1.10) V(-1.46) F(-2.07) Y(-2.07) I(-2.10) L(-2.10) W(-2.82)
Gap (2)
Pos 4 L(3.474) I(2.916) V(2.881) T(1.822) M(1.619) F(-0.18) A(-0.82) S(-0.86) C(-1) P(-1.03) Y(-1.07) D(-1.11) G(-
1.13) Q(-1.54) K(-1.54) E(-1.80) N(-1.86) H(-1.86) R(-2.01) W(-2.32)
Gap (3)
Pos 5 N(6) S(1) D(1) T(0) G(0) E(0) Q(0) R(0) K(0) H(-1) P(-2) A(-2) M(-2) Y(-2) C(-3) I(-3) L(-3) V(-3) F(-3) W(-4)
Gap (0)
Pos 6 Q(4.594) E(1.594) R(0.594) K(0.594) S(-0.40) T(-0.40) N(-0.40) D(-0.40) H(-0.40) M(-0.40) P(-1.40) A(-1.40)
Y(-1.40) G(-2.40) L(-2.40) V(-2.40) W(-2.40) C(-3.40) I(-3.40) F(-3.40)
Gap (1)
Pos 7 M(3.629) L(3.515) I(2.823) V(2.467) F(0) C(-1) A(-1) Y(-1) Q(-1.17) S(-1.67) T(-1.67) R(-1.78) K(-1.78) W(-
1.78) P(-2.67) N(-2.67) E(-2.67) H(-2.67) D(-3.43) G(-3.67)
Gap (0)
Pos 8 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (2)
Pos 9 E(4.619) D(4.550) Q(3.074) K(0.786) T(0.323) N(0.323) S(0) R(-0.00) H(-0.15) P(-1) A(-1.15) M(-1.54) G(-1.67)
Y(-1.95) V(-2.82) L(-2.95) W(-2.95) I(-3) F(-3) C(-3.54)
//

===============================
 SLIM 103
===============================
ID           Epimerase.clust.0.2.6
Center             1rpn_BD_3
AvSimToCtr 0.416
AvRMSDToCtr 1.530 A
Size         14
NumDistinct 7
FracDDI            1
FracPeptides       0
FracIntra    0
Species            AQUIFEX AEOLICUS VF5 (3), AQUIFEX AEOLICUS (2), PSEUDOMONAS AERUGINOSA (1), ARABIDOPSIS THALIANA
(1)
Conservation       0.428571428571429

Members
      1n7g_AD_2 1n7g_CB_2 1n7g_BC_2 1n7g_DA_0 1rpn_AC_3 1rpn_CA_3 1rpn_DB_3 2z1m_AC_0 2z1m_DB_0 2z95_DA_0
      2z95_CB_0 2z1m_BD_0 2z95_AD_0 2z95_BC_0

Peptides

PartnerDomains
      Epimerase (1rpn_BD_3,1n7g_AD_2,2z1m_AC_0,2z95_CB_0,2z1m_BD_0,2z95_AD_0,2z95_BC_0)
      Mur_ligase (2z95_CB_0,2z1m_BD_0,2z95_BC_0)
      KR (1rpn_BD_3)
      RmlD_sub_bind (1rpn_BD_3)
      adh_short (1rpn_BD_3)

Dist Members Intf   Alignment
      1rpn_BD_3     A     C     S     Q     R     I     T     H     E     R     Q
      1n7g_AD_2     A     S           R     R     D           R     E     R     S
      2z1m_AC_0     F           S     I                             E     R     T
      2z95_CB_0     F     S           I     R     E                       R     T
      2z1m_BD_0     F     S     N     I
      2z95_AD_0     F     S           I                             E     R     T
      2z95_BC_0     F     S           I     R     E                 E     R     T

Dist Members ResidueID Alignment
      1rpn_BD_3   63    64    65      67    68    71    106   107   110   113   114
      1n7g_AD_2   95    96            99    100   103         139   142   145   146
      2z1m_AC_0   64          65      68                            111   114   115
      2z95_CB_0   64    65            68    69    72                      114   115
      2z1m_BD_0   64    65    66      68
      2z95_AD_0   64    65            68                            111   114   115
      2z95_BC_0   64    65            68    69    72                111   114   115

Alignment Occupancy       1     0.857 0.428 1     0.571 0.571 0.142 0.285 0.714 0.857 0.857
Gap in betw Columns       0     2     0       2   38    2     0

SLIM   RegEx        [FA][SC]..[IQR]R..[EDI]
SLIM   Coverage           0.857142857142857
SLIM   PSSM Match Cutoff 16.9415528410949
SLIM   I=181997 Im=6121 Id=65 Idm=2
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 F(5.663) A(2.753) Y(2.666) W(0.670) S(-0.13) M(-0.19) I(-0.19) L(-0.19)   C(-0.96) G(-1.13) H(-1.19) V(-1.19)
T(-1.60) N(-1.96) E(-1.96) Q(-1.96) R(-1.96) K(-1.96) P(-2.13) D(-2.60)
Gap (0)
Pos 1 C(7.054) S(3.664) A(0.734) T(0.690) N(0.667) G(-0.32) D(-0.32) Q(-0.32)   K(-0.32) E(-0.33) M(-1.15) P(-1.30)
H(-1.30) R(-1.30) I(-1.90) L(-1.90) V(-1.90) F(-2.15) Y(-2.15) W(-2.90)
Gap (2)
Pos 2 I(3.663) Q(3.073) R(3.073) L(1.670) M(0.759) V(0.677) K(0.391) E(0.210)   F(-0.31) A(-1) Y(-1.09) N(-1.13) H(-
1.13) S(-1.23) T(-1.23) C(-1.28) D(-1.62) P(-2.23) W(-2.78) G(-2.96)
Gap (0)
Pos 3 R(4.440) K(1.440) Q(0.440) N(-0.55) E(-0.55) H(-0.55) S(-1.55) T(-1.55)   A(-1.55) M(-1.55) P(-2.55) G(-2.55)
D(-2.55) L(-2.55) Y(-2.55) C(-3.55) I(-3.55) V(-3.55) F(-3.55) W(-3.55)
Gap (2)
Pos 4 D(4.090) E(3.771) I(2.056) Q(0.815) L(0.069) K(-0.17) T(-0.36) N(-0.38)   S(-0.80) M(-0.83) V(-0.89) H(-1.06)
R(-1.16) A(-1.73) P(-1.80) F(-1.80) Y(-2.31) G(-2.36) C(-2.73) W(-3.73)
//

===============================
 SLIM 104
===============================
ID           EutN_CcmL.clust.0.2.0
Center             2qw7_FG_0
AvSimToCtr 0.481
AvRMSDToCtr 0.921 A
Size         32
NumDistinct 11
FracDDI            0.545454545454545
FracPeptides       0
FracIntra    0
Species            ESCHERICHIA COLI (8), HALOTHIOBACILLUS NEAPOLITANUS (2)
Conservation       0.8

Members
      2hd3_AF_0   2hd3_DC_0 2z9h_AF_0 2z9h_DC_0 2hd3_BA_0 2hd3_CB_0 2hd3_HG_0 2hd3_ED_0 2z9h_BA_0 2z9h_ED_0
      2hd3_LK_0   2hd3_FE_0 2hd3_IH_0 2z9h_CB_0 2z9h_FE_0 2hd3_GL_0 2hd3_KJ_0 2qw7_AB_0 2qw7_GH_0 2qw7_BC_0
      2qw7_CD_0   2qw7_HI_0 2qw7_DE_0 2qw7_EA_0 2qw7_IJ_0 2qw7_JF_0 2rcf_AB_0 2rcf_BC_0 2rcf_CD_0 2rcf_DE_0
      2rcf_EA_0   2hd3_JI_0
Peptides

PartnerDomains
      EutN_CcmL (2qw7_FG_0,2z9h_AF_0,2z9h_DC_0,2z9h_BA_0,2rcf_AB_0,2rcf_EA_0)

Dist Members Intf Alignment
      2qw7_FG_0   L     V     V     S     T     S     K     T     P     N       L    L    L    Q    E    R    Y
      E     V     A     G     S     R     G     D     R     P     L     D       A
      2hd3_AF_0         I     V     C     T     V                                    L         C
                                                                        V
      2hd3_DC_0         I     V     C     T     V     R     H                   L    L         C
      2z9h_AF_0         I     V     C     T     V     R     H                   L    L    M    C
            V           I                                               V
      2z9h_DC_0         I     V     C     T     V     R     H                   L    L    M    C
            V     A     I
      2hd3_BA_0         I     V     C     T     V     R     H                   L    L         E              C
            V                 S     R           T     S     P     V     D
      2hd3_CB_0         I     V     C     T     V     R     H                   L    L                        C
      A     V                       R                             V     D
      2z9h_BA_0         I     V     C     T     V     R     H                   L    L    M    E              C
      A     V     A     I           R           T     S     P     V     D       L
      2rcf_AB_0         L     V     S     T     N     R     I           D       M    L    V
            V     A     V     S     R           S     Y     P     S     D       L
      2rcf_EA_0         L           T                 R     I           D       M    L
            V     A     V     S     R           S     Y     P     S     D       L
      2hd3_JI_0         I     V     C     T     V                       H            L

Dist Members ResidueID Alignment
      2qw7_FG_0   7     10    11    12    13    14    15    16    17    18      19   24   26   28   38   39
      40    41    42    43    44    61    64    70    71    72    73    74      75   76
      2hd3_AF_0         10    11    12    13    14                                   24        40
                                                                        74
      2hd3_DC_0         10    11    12    13    14    15    16                  19   24        40
      2z9h_AF_0         10    11    12    13    14    15    16                  19   24   26   40
            42          44                                              74
      2z9h_DC_0         10    11    12    13    14    15    16                  19   24   26   40
            42    43    44
      2hd3_BA_0         10    11    12    13    14    15    16                  19   24        28
      40          42                61    64          71    72    73    74      75
      2hd3_CB_0         10    11    12    13    14    15    16                  19   24
      40    41    42                      64                            74      75
      2z9h_BA_0         10    11    12    13    14    15    16                  19   24   26   28
      40    41    42    43    44          64          71    72    73    74      75   76
        2rcf_AB_0         10    11    12    13    14    15   16         18    19    24    26
              37    38    39    56    59          66    67   68   69    70    71
        2rcf_EA_0         10          13                15   16         18    19    24
              37    38    39    56    59          66    67   68   69    70    71
        2hd3_JI_0         10    11    12    13    14                    17          24

Alignment Occupancy     0.090 1     0.909 1     0.909 0.909 0.818 0.818 0.090 0.363 0.818 1     0.454 0.636 0.090
      0.090 0.363 0.272 0.727 0.454 0.545 0.363 0.545 0.090 0.454 0.454 0.454 0.545 0.727 0.363
Gap in betw Columns     0     0     0     0     0     0     2     4     3,15 1,13 1       19    9     0

SLIM   RegEx        [ILV]V[CST]T[VSN][RK][HIT]..[LM].{4}L
SLIM   Coverage           0.545454545454545
SLIM   PSSM Match Cutoff 20.7282843031509
SLIM   I=181997 Im=4461 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 I(3.758) L(2.743) V(2.360) M(1.271) F(-0.05) A(-0.85) C(-1) Y(-1) S(-2) T(-2) Q(-2.61) K(-2.61) R(-2.72) W(-
2.72) P(-2.85) E(-2.85) N(-3) H(-3) D(-3.12) G(-3.85)
Gap (0)
Pos 1 V(3.904) I(2.904) M(0.904) L(0.904) A(-0.09) C(-1.09) F(-1.09) Y(-1.09) S(-2.09) T(-2.09) P(-2.09) E(-2.09)
Q(-2.09) K(-2.09) G(-3.09) N(-3.09) D(-3.09) H(-3.09) R(-3.09) W(-3.09)
Gap (0)
Pos 2 C(8.681) S(2.345) T(1.744) A(0.227) N(-0.47) G(-0.76) D(-0.76) M(-1) P(-1.04) Q(-1.17) K(-1.17) I(-1.18) L(-
1.18) V(-1.18) E(-1.25) H(-1.63) R(-1.99) F(-2) Y(-2) W(-2.18)
Gap (0)
Pos 3 T(3.904) S(0.904) P(0.904) G(0.904) D(0.904) N(-0.09) E(-0.09) Q(-0.09) H(-0.09) K(-0.09) C(-1.09) A(-1.09)
R(-1.09) M(-1.09) I(-2.09) L(-2.09) V(-2.09) F(-2.09) Y(-2.09) W(-3.09)
Gap (0)
Pos 4 V(3.681) N(3.609) I(2.682) S(1.669) M(0.704) L(0.690) A(-0.01) T(-0.82) D(-0.98) C(-1.18) Y(-1.23) F(-1.25)
E(-1.27) Q(-1.27) K(-1.27) G(-1.52) R(-1.82) P(-1.93) H(-2.27) W(-3.16)
Gap (0)
Pos 5 R(4.687) K(2.937) Q(0.799) E(-0.02) N(-0.20) H(-0.27) S(-1.02) T(-1.02) A(-1.20) M(-1.20) P(-2.02) D(-2.02)
G(-2.20) L(-2.20) Y(-2.20) C(-3.20) I(-3.20) V(-3.20) F(-3.20) W(-3.20)
Gap (0)
Pos 6 H(7.393) I(2.299) T(1.710) Y(1.413) D(0.553) N(0.459) L(0.324) E(-0.43) Q(-0.43) M(-0.50) R(-0.53) V(-0.54)
S(-0.74) F(-0.92) P(-1.10) G(-1.12) K(-1.20) A(-1.74) C(-2.05) W(-2.43)
Gap (2)
Pos 7 L(3.585) M(3.455) V(2.549) I(1.647) F(-0.20) C(-1.20) A(-1.20) Y(-1.20) Q(-1.31) S(-1.87) T(-1.87) R(-1.87)
K(-1.87) W(-1.87) P(-2.87) N(-2.87) E(-2.87) H(-2.87) G(-3.87) D(-3.87)
Gap (4)
Pos 8 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
//
===============================
 SLIM 105
===============================
ID           F420_oxidored.clust.0.15.1
Center             2ahr_DE_1
AvSimToCtr 0.404
AvRMSDToCtr 2.412 A
Size         23
NumDistinct 7
FracDDI            0.714285714285714
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (2), PLASMODIUM FALCIPARUM 3D7 (2), STREPTOCOCCUS PYOGENES M1 GAS (2), STREPTOCOCCUS
PYOGENES (1)
Conservation       0.285714285714286

Members
      2ahr_AB_1 2amf_AB_1 2amf_CD_1 2ahr_CD_1 2amf_DE_1 2izz_AC_1 2izz_DB_1 2izz_EA_1 2rcy_CA_1 2rcy_EB_0
      2rcy_DE_0 2ahr_BA_1 2amf_BA_1 2amf_DC_1 2ahr_DC_1 2ahr_ED_1 2amf_ED_1 2izz_AE_1 2izz_BD_1 2izz_CA_1
      2rcy_AC_1 2rcy_BE_1 2rcy_ED_0

Peptides

PartnerDomains
      F420_oxidored (2ahr_DE_1,2ahr_BA_1,2amf_BA_1,2izz_AE_1,2rcy_AC_1)

Dist Members Intf   Alignment
      2ahr_DE_1     H     D     C   S     P     G     G     I     A       L
      2izz_AC_1           D     S   S     P     G           I     H
      2rcy_CA_1           D     V   S     P     G     G     A     V
      2ahr_BA_1     E     K     V         K     N     G     I     P       K
      2amf_BA_1     E     K     V   K     N     G     I           P       K
      2izz_AE_1     D     D     V         K     M     G     L     P       R
      2rcy_AC_1     E     D     V         K     N     G     L     S       R

Dist Members ResidueID Alignment
      2ahr_DE_1   213   217   220   221   222   223   224   227   228     230
      2izz_AC_1         229   232   233   234   235         239   240
      2rcy_CA_1         221   224   225   226   227   228   231   232
      2ahr_BA_1   174   178   181         182   183   184   185   186     187
      2amf_BA_1   174   178   181   182   183   184   185         186     187
      2izz_AE_1   186   190   193         194   195   196   197   198     199
      2rcy_AC_1   178   182   185         186   187   188   189   190     191

Alignment Occupancy       0.714 1   1     0.571 1     1     0.857 0.857 1       0.714
Gap in betw Columns       3     2     0     0     0     0     0,2   0     0,1

SLIM   RegEx        [EHD].{3}[DK]..[VSC][SK][KPN][GNM][GI].{0,2}[ILA][PSHAV].{0,1}[RKL]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 29.121347680425
SLIM   I=181997 Im=7099 Id=25 Idm=4
SLIM   PSSM p-value 0.0126935331795679

PSSM Listing
Pos 0 H(6.055) E(4.171) D(4.113) Q(1.239) K(0.239) N(0.186) Y(0.113) T(-0.04) S(-0.47) R(-0.52) P(-1.47) A(-1.62)
G(-2.04) M(-2.47) F(-2.51) V(-3.04) W(-3.13) I(-3.33) L(-3.47) C(-3.81)
Gap (3)
Pos 1 D(5.663) K(3.753) E(1.800) T(0.800) N(0.800) R(0.792) Q(0.399) S(0) P(-1) H(-1) G(-1.19) A(-1.60) M(-1.96)
Y(-2.60) L(-2.96) C(-3) I(-3) V(-3) F(-3) W(-3.60)
Gap (2)
Pos 2 C(7.054) V(3.665) I(2.668) S(2.073) M(0.716) L(0.699) A(0.219) T(-0.62) N(-0.84) F(-1.19) Y(-1.19) Q(-1.39)
K(-1.39) E(-1.41) G(-1.68) D(-1.68) P(-1.85) H(-2.35) R(-2.35) W(-2.78)
Gap (0)
Pos 3 S(3.158) K(3.074) T(0.268) N(0.268) A(0.196) R(0.193) E(-0.20) Q(-0.20) D(-0.73) G(-0.80) P(-1.55) H(-1.55)
M(-1.55) C(-1.80) L(-2.55) Y(-2.55) I(-2.73) V(-2.73) F(-2.73) W(-3.55)
Gap (0)
Pos 4 P(6.153) K(4.157) N(4.064) R(1.214) T(0.551) E(0.382) Q(0.382) S(-0.02) D(-0.35) A(-1.09) H(-1.31) G(-1.35)
M(-1.44) Y(-2.31) L(-2.44) V(-2.44) C(-3) I(-3) F(-3.31) W(-3.44)
Gap (0)
Pos 5 G(5.441) N(4.748) M(3.057) T(0.637) S(0.336) L(0.077) D(-0.00) A(-0.41) V(-0.50) Q(-0.68) R(-0.87) K(-0.87)
I(-0.88) E(-0.96) H(-1.60) F(-1.68) P(-2) W(-2.00) Y(-2.12) C(-2.35)
Gap (0)
Pos 6 G(5.663) I(2.055) T(0.673) V(0.097) L(0.066) A(-0.26) S(-0.30) M(-0.85) D(-1.30) F(-1.72) P(-2.26) N(-2.26)
E(-2.26) Q(-2.26) H(-2.26) R(-2.26) K(-2.26) W(-2.26) C(-2.42) Y(-2.42)
Gap (0,2)
Pos 7 I(3.241) L(2.934) A(2.087) V(1.934) M(1.202) F(-0.30) S(-0.72) C(-0.90) Y(-1.26) G(-1.85) T(-1.90) Q(-2.18)
R(-2.18) K(-2.18) P(-2.42) N(-2.42) E(-2.42) W(-2.70) H(-2.90) D(-3.08)
Gap (0)
Pos 8 P(6.153) H(6.054) A(2.140) S(2.130) V(2.068) I(1.088) T(0.569) Y(0.155) N(-0.00) D(-0.33) M(-0.56) E(-0.66)
Q(-0.66) L(-0.71) K(-0.85) G(-0.99) R(-1.16) C(-1.28) F(-1.88) W(-3.02)
Gap (0,1)
Pos 9 R(3.796) K(3.796) L(2.063) V(1.063) Q(0.452) M(0.235) I(0.080) E(0.067) N(-0.54) S(-0.89) T(-0.89) H(-0.92)
A(-1.33) F(-1.76) P(-1.89) D(-1.92) Y(-2.04) C(-2.51) G(-2.52) W(-3.04)
//

===============================
 SLIM 106
===============================
ID          F420_oxidored.clust.0.15.8
Center            1jax_BA_1
AvSimToCtr 0.362
AvRMSDToCtr 1.690   A
Size         10
NumDistinct 5
FracDDI             0.8
FracPeptides        0
FracIntra    0
Species             HOMO SAPIENS (1), LACTOBACILLUS PLANTARUM WCFS1 (1), ARCHAEOGLOBUS FULGIDUS (1)
Conservation        0.333333333333333

Members
      1jax_AB_1 1jay_BA_1 1jay_AB_1 2qk4_AB_1 2raf_AB_1 2raf_BA_1 3dtt_AB_1 3dtt_BA_1 3g17_GH_1 3g17_HG_1

Peptides

PartnerDomains
      F420_oxidored (1jax_BA_1,2qk4_AB_1)
      NAD_Gly3P_dh_N (3g17_GH_1)
      PDH (1jax_BA_1)
      GARS_A (2qk4_AB_1)
      GARS_N (2qk4_AB_1)
      NAD_binding_2 (3dtt_AB_1)

Dist Members Intf   Alignment
      1jax_BA_1     K     G     F     T     Y     E     D     P     S     N     R     L     S     L     P     L     N
      I     F       N     M     I     L
      2qk4_AB_1     K     T     G     L                                                                       T
      L
      2raf_AB_1                                                     K     R     R     E     A           F           T
      L             Q           F     V
      3dtt_AB_1                                                                                   L     P     V     R
      L     A       L           F     A
      3g17_GH_1                                                                 R     A     Q     N     G     H
      H

Dist Members ResidueID Alignment
      1jax_BA_1   105   106   107     108   109   112   156   181   183   184   186   187   190   191   193   194
      197   198   201   202   204     209   212
      2qk4_AB_1   207   208   319     320                                                                     323
      325
      2raf_AB_1                                                     159   160   162   163   166         169
      173   174         179           186   189
      3dtt_AB_1                                                                                   204   206   207
      210   211   214   215           222   225
        3g17_GH_1                                                                281   282   285   286   288   289
        291

Alignment Occupancy       0.4   0.4   0.4   0.4   0.2   0.2   0.2   0.2    0.4   0.4   0.6   0.6   0.6   0.6   0.8
      0.8   0.6   1       0.4   0.6   0.2   0.6   0.6
Gap in betw Columns       0     2     0     1     0     2     0     3,4    6     2

SLIM   RegEx        R[AEL]..[ASQ][LN].[PFG][HTLV]..[TNR][LHI].{3,4}[QNL]
SLIM   Coverage           0.6
SLIM   PSSM Match Cutoff 23.0882900854798
SLIM   I=181997 Im=6834 Id=25 Idm=1
SLIM   PSSM p-value 0.374677679356673

PSSM Listing
Pos 0 R(4.489) K(1.489) Q(0.489) N(-0.51) E(-0.51) H(-0.51) S(-1.51) T(-1.51)    A(-1.51) M(-1.51) P(-2.51) G(-2.51)
D(-2.51) L(-2.51) Y(-2.51) C(-3.51) I(-3.51) V(-3.51) F(-3.51) W(-3.51)
Gap (0)
Pos 1 E(3.393) A(2.403) L(2.398) V(1.399) Q(0.456) M(0.456) I(0.445) D(0.411)    S(-0.26) K(-0.43) T(-1.20) R(-1.20)
N(-1.26) C(-1.28) H(-1.43) F(-1.43) G(-1.46) P(-1.85) Y(-2.05) W(-3.05)
Gap (2)
Pos 2 Q(3.399) S(2.456) A(2.445) E(0.560) T(-0.20) N(-0.20) K(-0.20) R(-0.36)    G(-0.85) D(-0.85) M(-1.05) H(-1.20)
C(-1.26) P(-1.51) L(-2.05) Y(-2.05) I(-2.20) V(-2.51) F(-2.74) W(-3.05)
Gap (0)
Pos 3 N(4.390) L(3.084) V(2.084) M(1.092) I(1.087) S(-0.51) D(-0.59) F(-0.89)    T(-1.36) Q(-1.36) R(-1.36) K(-1.36)
E(-1.51) G(-1.57) A(-1.74) Y(-1.74) C(-1.85) H(-2.36) W(-2.85) P(-3.05)
Gap (1)
Pos 4 P(6.083) G(4.391) F(4.390) Y(1.397) T(0.505) W(-0.54) S(-0.98) A(-0.98)    V(-1.11) M(-1.33) D(-1.46) I(-1.49)
L(-1.49) N(-1.69) E(-1.69) Q(-1.69) K(-1.69) H(-1.86) R(-2.39) C(-2.86)
Gap (0)
Pos 5 H(6.390) V(2.707) L(2.442) T(2.413) I(1.710) M(0.752) Y(0.502) D(0.096)    N(-0.26) S(-0.39) P(-0.49) G(-0.53)
Q(-0.78) E(-0.82) A(-0.98) F(-0.98) K(-1.11) R(-1.16) C(-1.46) W(-2.60)
Gap (2)
Pos 6 N(4.395) R(3.399) T(2.415) K(0.630) S(0.149) D(0.108) Q(-0.05) G(-0.26)    E(-0.51) P(-0.51) H(-0.74) A(-1.74)
M(-1.74) C(-2.36) Y(-2.51) L(-2.74) I(-3.05) V(-3.05) F(-3.05) W(-3.74)
Gap (0)
Pos 7 H(6.390) L(3.533) I(2.731) V(2.535) M(1.610) Y(0.572) F(-0.13) N(-0.53)    D(-0.57) A(-1.13) T(-1.17) C(-1.18)
Q(-1.23) R(-1.23) E(-1.42) S(-1.70) K(-1.80) W(-2.13) P(-2.70) G(-3.17)
Gap (3,4)
Pos 8 N(4.393) Q(3.398) L(2.393) V(1.399) M(0.533) E(0.523) I(0.403) S(-0.26)    R(-0.26) K(-0.26) D(-0.29) T(-0.85)
H(-1.26) G(-1.46) F(-1.51) A(-1.74) Y(-1.74) P(-2.20) C(-2.36) W(-2.85)
//

===============================
 SLIM 107
===============================
ID           FAD_binding_3.clust.0.15.0
Center             3gmc_BA_0
AvSimToCtr 0.379
AvRMSDToCtr 1.906 A
Size         9
NumDistinct 7
FracDDI            0.428571428571429
FracPeptides       0
FracIntra    0
Species            MUS MUSCULUS (6), MESORHIZOBIUM LOTI (1)
Conservation       0.857142857142857

Members
      2bra_AB_0 2bra_BA_0 2bry_AB_0 2bry_BA_0 2c4c_AB_0 2c4c_BA_0 3gmb_AB_0 3gmb_BA_0 3gmc_AB_0

Peptides

PartnerDomains
      FAD_binding_3 (3gmc_BA_0,2bry_BA_0,2c4c_BA_0)
      DAO (2bry_BA_0,2c4c_BA_0)

Dist Members Intf   Alignment
      3gmc_BA_0     A     D     P   R     D     S     I       G     F     K     Q     D     R     W     V     S     K
      A     K
      2bra_AB_0     T               V                 P             F     T     I     R     E     M     R     G
            L
      2bra_BA_0     T                                         E     F     T     I     R     E     M     R     G
      2bry_AB_0     T               F                 P       E     F     T     I     R     E     M     R     G
      2bry_BA_0           T         V                         E     F     T     I     R     E     M     R     G
            L
      2c4c_AB_0                     F     V           P       E     F     T     I     R     E     M     R     G
            L
      2c4c_BA_0           T         V                 E       G     F     T     I     R     E     M     R     G     K

Dist Members ResidueID Alignment
      3gmc_BA_0   132   134   135   163   164   165   166     167   168   169   170   171   172   173   174   175
      176   231   269
      2bra_AB_0   182               223               224           227   228   229   230   231   232   233   234
            236
      2bra_BA_0   182                                         225   227   228   229   230   231   232   233   234
      2bry_AB_0   182               222               224     225   227   228   229   230   231   232   233   234
      2bry_BA_0         182         223                       225   227   228   229   230   231   232   233   234
            236
      2c4c_AB_0                     222   223         224     225   227   228   229   230   231   232   233   234
            236
        2c4c_BA_0         182         223               225   226   227   228   229   230   231    232   233   234
        235

Alignment Occupancy     0.571 0.428 0.142 0.857 0.285 0.142 0.714 0.857 1       1     1     1      1     1     1     1
      0.285 0.142 0.571
Gap in betw Columns     30,40 0,2   0     0,1   0     0     0     0     0       0     0     1,93

SLIM   RegEx        [VFR].{0,2}[PIE][EG].{0,1}F[TK][IQ][RD][ER][MW][RV][GS]
SLIM   Coverage           0.857142857142857
SLIM   PSSM Match Cutoff 28.6142856433916
SLIM   I=181997 Im=3353 Id=54 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 F(4.748) V(3.157) R(3.055) I(2.186) Y(1.777) M(0.407) L(0.385) K(0.120) W(-0.21) A(-0.65) Q(-0.77) H(-1.31)
E(-1.53) C(-1.59) N(-1.72) S(-1.90) T(-1.90) P(-2.49) G(-2.90) D(-2.90)
Gap (0,2)
Pos 1 P(6.152) E(3.061) I(2.057) T(0.283) D(0.199) Q(0.199) L(0.080) K(-0.59) M(-0.76) V(-0.79) S(-1.13) N(-1.17)
A(-1.33) H(-1.57) R(-1.57) F(-1.84) Y(-2.37) G(-2.52) C(-2.57) W(-3.81)
Gap (0)
Pos 2 G(4.747) E(4.440) D(1.464) Q(1.449) K(0.464) T(0.298) S(-0.15) N(-0.49) H(-0.49) R(-0.49) A(-0.70) V(-1.15)
P(-1.39) M(-2.39) Y(-2.39) W(-2.70) F(-3.15) I(-3.39) L(-3.39) C(-3.70)
Gap (0,1)
Pos 3 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 4 T(3.848) K(3.093) S(0.905) P(0.868) D(0.868) G(0.854) R(0.315) E(0.219) Q(0.219) N(0) H(-0.09) A(-1) M(-1)
C(-1.13) L(-2) Y(-2) I(-2.09) V(-2.09) F(-2.09) W(-3)
Gap (0)
Pos 5 I(3.846) Q(3.056) L(1.848) M(0.905) V(0.854) E(0.093) F(-0.14) R(-0.84) K(-0.84) A(-1) Y(-1) C(-1.13) S(-1.35)
T(-1.35) N(-1.68) D(-1.68) H(-1.68) P(-2.35) W(-2.78) G(-3.35)
Gap (0)
Pos 6 R(4.846) D(4.056) K(1.854) Q(0.905) E(0.648) N(0.219) H(-0.09) T(-0.35) S(-0.78) A(-1.09) M(-1.13) P(-1.78)
G(-1.78) Y(-2.09) L(-2.13) C(-3) I(-3) V(-3) F(-3) W(-3.09)
Gap (0)
Pos 7 E(4.846) R(3.093) Q(1.905) D(1.848) K(1.219) N(0) H(0) S(-0.09) T(-0.09) A(-1) P(-1.09) M(-1.78) G(-2) Y(-2)
L(-2.78) I(-3) V(-3) F(-3) W(-3) C(-3.78)
Gap (0)
Pos 8 W(9.054) M(4.846) L(1.848) I(0.848) Y(0.315) F(0.219) Q(-0.13) C(-1.09) S(-1.13) T(-1.13) A(-1.13) R(-1.13)
K(-1.13) H(-2) E(-2.09) V(-2.09) P(-2.13) N(-2.13) G(-2.78) D(-3.09)
Gap (0)
Pos 9 R(4.845) V(2.059) K(1.848) I(1.068) Q(0.854) E(-0.13) N(-0.14) H(-0.14) M(-0.35) L(-0.68) A(-0.78) S(-1.09)
T(-1.09) Y(-1.78) P(-2) G(-2.09) D(-2.09) C(-2.35) F(-2.35) W(-3)
Gap (0)
Pos 10 G(5.846) S(2.158) T(1) A(0.219) V(-0.13) N(-0.68) D(-0.78) E(-1.35) Q(-1.35) K(-1.35) P(-1.78) H(-1.78) R(-
1.78) W(-2.09) C(-2.35) M(-2.35) F(-2.78) Y(-2.78) I(-3.35) L(-3.35)
//

===============================
 SLIM 108
===============================
ID           FERM_C.clust.0.2.2
Center             2emt_BD_2
AvSimToCtr 0.448
AvRMSDToCtr 0.807 A
Size         6
NumDistinct 6
FracDDI            0
FracPeptides       0.833333333333333
FracIntra    0
Species            MUS MUSCULUS (2)
Conservation       1

Members
      1j19_AB_2 2ems_AB_2 2zpy_AB_2 2emt_AC_2 2d2q_AB_2 3bin_AB_2

Peptides
      2emt-D 1j19-B 2ems-B 2zpy-B 3bin-B

PartnerDomains

Dist Members Intf Alignment
      2emt_BD_2   R     K     T        H     M     Y     P     V     R     N
      1j19_AB_2                        G     T     Y     G     V     L
      2ems_AB_2                        G     A     L     T     L
      2zpy_AB_2                        K     K     L     V     I
      2d2q_AB_2               P        D     T     I     E     V     Q
      3bin_AB_2                        G     T     Y     F     T

Dist Members ResidueID Alignment
      2emt_BD_2   405   406   407      408   409   410   411   412   413   414
      1j19_AB_2                        408   409   410   411   412   413
      2ems_AB_2                        408   409   410   411   412
      2zpy_AB_2                        301   302   303   304   305
      2d2q_AB_2               297      298   299   300   301   302   303
      3bin_AB_2                        5     6     7     8     9

Alignment Occupancy     0.166 0.166 0.333 1        1     1     1     1     0.5   0.166
Gap in betw Columns     0     0     0     0        0
SLIM   RegEx        [GHDK][TAMK][YLI][FTPGEV][VTIL][QRL]
SLIM   Coverage           0.833333333333333
SLIM   PSSM Match Cutoff 20.981130109731
SLIM   I=181997 Im=5479 Id=105 Idm=1
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 H(6.208) G(5.307) D(4.218) K(3.215) T(0.763) E(0.651) R(0.397) Y(0.252)   N(0.131) S(-0.11) Q(-0.15) A(-0.50)
V(-0.61) P(-1.54) M(-2.14) F(-2.27) W(-2.28) C(-3) L(-3.14) I(-3.37)
Gap (0)
Pos 1 T(3.317) K(3.233) M(3.220) A(2.241) S(0.713) G(0.442) R(0.430) P(0.408)   D(0.372) L(0.324) Q(0.166) E(0.036)
N(-0.28) H(-0.50) I(-0.52) C(-0.86) F(-1.32) Y(-1.74) V(-2.11) W(-2.27)
Gap (0)
Pos 2 Y(6.307) L(2.976) I(2.463) F(2.355) V(1.992) W(1.321) H(1.313) M(1.131)   C(-1.37) A(-1.37) Q(-1.43) S(-2) T(-2)
R(-2.11) K(-2.11) N(-2.37) E(-2.37) P(-3) D(-3.23) G(-3.37)
Gap (0)
Pos 3 P(5.211) G(4.215) F(4.209) E(3.219) T(2.324) V(2.238) I(1.268) Y(1.244)   D(0.600) Q(0.414) S(-0.11) K(-0.30)
M(-0.30) L(-0.41) A(-0.61) W(-0.68) H(-0.80) N(-0.83) R(-1.23) C(-1.80)
Gap (0)
Pos 4 V(3.437) I(3.015) L(2.460) T(2.220) M(1.133) A(-0.37) S(-0.56) F(-0.61)   P(-0.62) D(-0.71) G(-0.72) C(-1) Y(-
1.11) Q(-1.32) K(-1.32) E(-1.38) N(-1.56) H(-1.56) R(-2.14) W(-2.74)
Gap (0)
Pos 5 Q(3.227) R(3.227) L(2.213) V(1.217) K(0.534) M(0.378) E(0.341) I(0.221)   N(-1.07) H(-1.07) S(-1.38) T(-1.38)
D(-1.64) A(-1.69) F(-1.69) Y(-1.92) P(-2.38) C(-2.55) W(-2.92) G(-3.03)
//

===============================
 SLIM 109
===============================
ID           FHA.clust.0.2.0
Center             1gxc_DE_0
AvSimToCtr 0.395
AvRMSDToCtr 1.345 A
Size         17
NumDistinct 9
FracDDI            0
FracPeptides       0.888888888888889
FracIntra    0
Species            ESCHERICHIA COLI (1)
Conservation       1

Members
      1g6g_AE_0 1g6g_BF_0 1gxc_AB_0 1gxc_JK_0 1gxc_GH_0 2jqi_AB_0 2ff4_AE_2 2ff4_BF_2 2pie_AF_0 1j4p_AB_0
      1k3n_AB_0 1j4l_AP_0 1k2n_AP_0 1j4q_AB_0 1k3q_AB_0 2aff_AB_0 2jql_AB_0
Peptides
      1gxc-E 1g6g-E 2jqi-B 2pie-F 1j4p-B 1k3n-B 1j4l-P 2jql-B

PartnerDomains

Dist Members Intf   Alignment
      1gxc_DE_0     H     F     D     T     Y     L     I     R
      1g6g_AE_0     L     E     V     T     E     A     D
      2jqi_AB_0           N     I     T     Q     P     T
      2pie_AF_0           L     K     T     E     R     Y
      1j4p_AB_0                 Q     T     P     T     D
      1k3n_AB_0                 Q     T     P     T     D     L
      1j4l_AP_0                 L     T     Q     E     L
      2aff_AB_0     S     G     P     T     P     V     C
      2jql_AB_0     T     Q     P     T     Q     Q     S

Dist Members ResidueID Alignment
      1gxc_DE_0   0     1     2       3     4     5     6     7
      1g6g_AE_0   2     3     4       5     6     7     8
      2jqi_AB_0         3     4       5     6     7     8
      2pie_AF_0         2     3       4     5     6     7
      1j4p_AB_0               170     171   172   173   174
      1k3n_AB_0               170     171   172   173   174   176
      1j4l_AP_0               602     603   604   605   606
      2aff_AB_0   230   232   233     234   235   236   237
      2jql_AB_0   5     6     7       8     9     10    11

Alignment Occupancy       0.444 0.666 1     1     1     1     1     0.222
Gap in betw Columns       0     0     0     0     0

SLIM   RegEx        [FQNGLE][QPDKILV]T[QPEY][TAQRPELV][DSTCILY]
SLIM   Coverage           0.888888888888889
SLIM   PSSM Match Cutoff 21.3747049413378
SLIM   I=181997 Im=6188 Id=509 Idm=15
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 N(3.808) G(3.806) F(3.805) Q(2.859) E(2.859) L(1.825) V(0.879) Y(0.854) D(0.248) M(0.075) I(-0.05) K(-0.28)
T(-0.40) S(-0.40) R(-0.58) W(-1.03) H(-1.12) A(-1.33) P(-2.12) C(-2.59)
Gap (0)
Pos 1 P(5.496) D(3.810) Q(3.511) K(2.847) I(2.214) V(2.160) L(1.980) E(1.055) M(0.544) R(0.402) T(0.250) N(-0.30)
S(-0.55) A(-0.88) H(-1.04) F(-1.24) Y(-1.44) C(-1.85) G(-2.07) W(-2.69)
Gap (0)
Pos 2 T(4) C(-4) S(-4) P(-4) A(-4) G(-4) N(-4) D(-4) E(-4) Q(-4) H(-4) R(-4) K(-4) M(-4) I(-4) L(-4) V(-4) F(-4)
Y(-4) W(-4)
Gap (0)
Pos 3 P(5.901) Y(4.804) Q(3.937) E(3.571) F(0.817) D(0.743) K(0.499) T(0.389) H(0.351) R(0.172) W(-0.12) S(-0.36)
N(-0.36) M(-0.79) A(-1.07) V(-1.95) G(-2.07) L(-2.17) I(-2.46) C(-2.95)
Gap (0)
Pos 4 P(4.809) Q(2.887) E(2.876) R(2.836) T(2.547) V(2.126) L(1.868) A(1.866) I(1.146) K(0.564) D(0.479) M(0.356)
S(0.215) G(-0.24) N(-0.43) H(-0.51) C(-1.22) F(-1.53) Y(-1.59) W(-2.72)
Gap (0)
Pos 5 C(6.802) D(4.904) Y(4.803) T(1.996) I(1.948) L(1.946) S(1.915) E(0.998) V(0.979) F(0.922) N(0.300) M(0.264)
H(0.106) W(-0.13) Q(-0.47) A(-0.51) G(-0.59) P(-0.71) K(-0.95) R(-1.78)
//

===============================
 SLIM 110
===============================
ID           FTR_C.clust.0.2.0
Center             2fhk_CB_1
AvSimToCtr 0.608
AvRMSDToCtr 0.709 A
Size         23
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            METHANOSARCINA BARKERI (2), METHANOPYRUS KANDLERI (1), ARCHAEOGLOBUS FULGIDUS (1)
Conservation       0.5

Members
      1ftr_AD_1 1ftr_BC_1 1ftr_CB_1 1ftr_DA_1 2fhj_AD_1 2fhj_BC_1 2fhj_CB_1 2fhj_DA_1 2fhk_AD_1 2fhk_BC_1
      2fhk_DA_1 1m5h_AD_1 1m5h_EH_1 1m5h_BC_1 1m5h_DA_1 1m5h_GF_1 1m5h_FG_1 1m5h_CB_1 1m5h_HE_1 1m5s_AD_2
      1m5s_DA_2 1m5s_CB_2 1m5s_BC_2

Peptides

PartnerDomains
      FTR (2fhk_CB_1,1m5h_AD_1,1m5s_AD_2,1m5s_DA_2)
      NmrA (1m5s_AD_2,1m5s_DA_2)

Dist Members Intf Alignment
      2fhk_CB_1   A     A     S     H     K     Y     P     E     D     G     R     P     T
      1m5h_AD_1         Y     D     Y     Y           P           D     G     R     P
      1m5s_AD_2         A     T     K     R           P           D     G     R
      1m5s_DA_2         A     T     K     R           P     S     D     G     R
Dist Members ResidueID Alignment
      2fhk_CB_1   27    28    29      30     31     60   63     64   68     69     70     71     102
      1m5h_AD_1         3028 3029     3030   3031        3062        3067   3068   3069   3070
      1m5s_AD_2         3028 3029     3030   3031        3062        3067   3068   3069
      1m5s_DA_2         28    29      30     31          62     63   67     68     69

Alignment Occupancy      0.25   1     1      1     1     0.25   1    0.5    1      1      1      0.5   0.25
Gap in betw Columns      0      0     0      30,31 0     3      0    0      0

SLIM   RegEx        P[SE].{3}DGRP
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 18.938708386238
SLIM   I=181997 Im=8244 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3) F(-
4) W(-4)
Gap (0)
Pos 1 E(3.620) S(2.631) D(0.740) Q(0.740) T(-0.07) N(-0.07) K(-0.07) A(-0.25) H(-1.07) R(-1.07) G(-1.25) P(-1.69)
M(-2.07) C(-2.33) Y(-2.69) I(-3.07) L(-3.07) V(-3.07) F(-3.07) W(-3.69)
Gap (3)
Pos 2 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (0)
Pos 3 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 4 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 5 P(6.306) T(0.306) S(-1.69) A(-1.69) N(-1.69) D(-1.69) E(-1.69) Q(-1.69) K(-1.69) G(-2.69) H(-2.69) R(-2.69)
M(-2.69) V(-2.69) C(-3.69) I(-3.69) L(-3.69) Y(-3.69) F(-4.69) W(-4.69)
//

===============================
 SLIM 111
===============================
ID          Fer2_2.clust.0.15.1
Center            1n61_AC_1
AvSimToCtr 0.650
AvRMSDToCtr 0.509 A
Size        23
NumDistinct 6
FracDDI           0.333333333333333
FracPeptides      0
FracIntra    0
Species           HYDROGENOPHAGA PSEUDOFLAVA (2), BOS TAURUS (1), THAUERA AROMATICA (1), OLIGOTROPHA
CARBOXIDOVORANS OM5 (1), EUBACTERIUM BARKERI (1)
Conservation      0.333333333333333

Members
      1ffu_AC_2 1ffv_AC_2 1ffu_DF_2 1ffv_DF_2 1n5w_AC_1 1zxi_AC_1 1n5w_DF_1 1n63_AC_1 1n61_DF_1 1n63_DF_1
      1zxi_DF_1 1n60_AC_1 1n62_AC_1 1n60_DF_1 1n62_DF_1 1rm6_CB_1 1sb3_CB_1 1rm6_FE_1 1sb3_FE_1 3hrd_DC_1
      3hrd_HG_1 3b9j_IJ_2 3etr_AB_2

Peptides

PartnerDomains
      FAD_binding_5 (1n61_AC_1,1rm6_CB_1)
      FAD_binding_4 (1rm6_CB_1)

Dist Members Intf Alignment
      1n61_AC_1   H     L       D     P      Q     R     Y     K     I
      1ffu_AC_2                 D     P      Q           N     K
      1ffu_DF_2                 D     P      Q           N     K     T
      1rm6_CB_1   E             G     P      T     R           R     A
      3hrd_DC_1                 S     P      Q     R           R     S
      3etr_AB_2                 G     K      Q     K

Dist Members ResidueID Alignment
      1n61_AC_1   79    99    103     104    105   107   108   189   190
      1ffu_AC_2               103     104    105         108   189
      1ffu_DF_2               103     104    105         108   189   190
      1rm6_CB_1   79          103     104    105   107         228   230
      3hrd_DC_1               102     103    104   106         191   193
      3etr_AB_2               339     340    341   343

Alignment Occupancy       0.333 0.166 1      1     1     0.666 0.5   0.833 0.666
Gap in betw Columns       0     0     1      0     80    0,1

SLIM   RegEx        [DGS][PK][QT].[RK][NY]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 18.859412795965
SLIM   I=181997 Im=6669 Id=5 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 D(5.308) G(4.903) S(2.295) E(1.362) T(1) N(0.619) A(-0.15) Q(-0.33) K(-0.92) V(-0.96) P(-1.23) H(-1.23) R(-
1.74) C(-2.27) M(-2.27) F(-2.74) Y(-2.74) W(-2.77) I(-2.92) L(-3.27)
Gap (0)
Pos 1 P(6.817) K(3.220) T(0.888) R(0.295) E(-0.27) Q(-0.27) S(-0.74) N(-0.74) A(-1) D(-1) H(-1.74) M(-1.74) G(-2)
V(-2.11) L(-2.74) Y(-2.74) C(-3) I(-3) F(-3.74) W(-3.74)
Gap (0)
Pos 2 Q(4.819) T(2.295) E(1.844) K(0.888) R(0.844) S(0.251) D(0.251) N(0) H(0) M(-0.11) P(-0.27) G(-0.56) A(-1) Y(-
1.11) L(-2) V(-2) W(-2.11) C(-2.27) I(-2.74) F(-2.74)
Gap (1)
Pos 3 R(4.323) K(3.347) Q(0.594) E(-0.04) N(-0.40) H(-0.57) S(-1.04) T(-1.04) A(-1.40) M(-1.40) P(-2.04) D(-2.04)
G(-2.40) L(-2.40) Y(-2.40) C(-3.40) I(-3.40) V(-3.40) F(-3.40) W(-3.40)
Gap (0)
Pos 4 Y(5.208) N(4.901) F(1.213) H(0.303) W(0.213) S(-0.07) D(-0.08) Q(-0.92) T(-1.03) E(-1.03) R(-1.03) K(-1.03)
G(-1.07) M(-2.24) I(-2.55) L(-2.55) V(-2.55) A(-2.69) P(-2.92) C(-3.24)
//

===============================
 SLIM 112
===============================
ID           Ferritin.clust.0.15.5
Center             1jre_JH_0
AvSimToCtr 0.487
AvRMSDToCtr 1.037 A
Size         277
NumDistinct 20
FracDDI            0.85
FracPeptides       0
FracIntra    0
Species            SULFOLOBUS SOLFATARICUS (3), TREPONEMA PALLIDUM (2), BACILLUS ANTHRACIS (2), STREPTOCOCCUS SUIS
(1), AGROBACTERIUM TUMEFACIENS (1), BACILLUS SUBTILIS (1), BREVIBACILLUS BREVIS (1), MYCOBACTERIUM SMEGMATIS (1),
HALOBACTERIUM SALINARIUM (1), THERMOSYNECHOCOCCUS ELONGATUS (1), LISTERIA INNOCUA (1), ESCHERICHIA COLI (1),
BORRELIA BURGDORFERI (1), HELICOBACTER PYLORI (1)
Conservation       0.166666666666667

Members
      1dps_AK_0   1dps_HA_0   1dps_BJ_0   1dps_FB_0   1dps_IG_0   1dps_EC_0   1dps_GD_0   1dps_CL_0   1dps_DI_0   1dps_JF_0
      1dps_KH_0   1dps_LE_0   1f30_AD_0   1f30_CF_0   1f30_LI_0   1f30_EA_0   1f30_HL_0   1f30_KJ_0   1f30_DE_0   1f30_IH_0
      1f33_AD_0   1f33_CF_0   1f33_DE_0   1f33_HL_0   1f33_IH_0   1f33_KJ_0   1f33_EA_0   1f33_LI_0   1jre_AJ_0   1jre_GC_0
      1jre_BL_0   1jre_CK_0   1jre_LE_0   1jre_KG_0   1jre_IF_0   1jre_DI_0   1jre_FD_0   1jre_EB_0   1jre_HA_0   1l8i_AJ_0
      1l8i_BL_0   1l8i_CK_0   1l8i_EB_0   1l8i_HA_0   1l8i_JH_0   1l8i_KG_0   1l8i_IF_0   1l8i_GC_0   1l8i_DI_0   1l8i_FD_0
      1l8i_LE_0   1jts_AJ_0   1jts_RP_0   1jts_VT_0   1jts_BL_0   1jts_WS_0   1jts_CK_0   1jts_DI_0   1jts_PU_0   1jts_IF_0
      1jts_KG_0   1jts_LE_0   1jts_NX_0   1jts_EB_0   1jts_UR_0   1jts_HA_0   1jts_FD_0   1jts_GC_0   1jts_TM_0   1jts_MV_0
      1jts_JH_0   1jts_OW_0   1jts_QN_0   1jts_XQ_0   1jts_SO_0   1o9r_AF_0   1o9r_FD_0   3ge4_AF_0   3ge4_EI_0   3ge4_IH_0
      3ge4_LJ_0   3ge4_FD_0   3ge4_GL_0   3ge4_HE_0   3ge4_BK_0   3ge4_DA_0   3ge4_JG_0   3ge4_CB_0   3ge4_KC_0   1o9r_CB_0
      1o9r_DA_0   2z90_CB_0   1uvh_CA_0   1vel_BE_0   1vel_DC_0   1moj_AD_0   1tjo_AD_0   1tk6_AD_0   1tkp_AD_0   1tko_AD_0
      2c41_AF_0   2c41_KC_0   2c41_GK_0   2c41_CG_0   2c41_FD_0   2c41_DA_0   2c41_HE_0   2c41_LI_0   2c41_IB_0   2c41_EJ_0
      2c41_JH_0   2c41_BL_0   1ji4_DL_0   1ji4_HD_0   2fjc_AJ_0   2fjc_IF_0   2fjc_LH_0   2fjc_BK_0   2fjc_FC_0   2fjc_CI_0
      2fjc_KE_0   2fjc_JG_0   2fjc_EB_0   2fjc_DL_0   2fjc_GA_0   2fjc_PO_0   2fjc_HD_0   2fjc_NP_0   2fjc_ON_0   1ji5_CA_0
      1jig_DA_0   1n1q_BD_0   2chp_AD_0   2d5k_AD_0   1qgh_AK_0   1qgh_CL_0   1qgh_JF_0   1qgh_BJ_0   1qgh_IG_0   1qgh_EC_0
      1qgh_FB_0   1qgh_KH_0   1qgh_GD_0   1qgh_DI_0   1qgh_HA_0   1qgh_LE_0   2iy4_AK_0   2iy4_CL_0   2iy4_FB_0   2iy4_GD_0
      2iy4_OY_0   2iy4_QO_0   2iy4_YQ_0   2iy4_SP_0   2iy4_BJ_0   2iy4_JF_0   2iy4_HA_0   2iy4_IG_0   2iy4_VR_0   2iy4_US_0
      2iy4_DI_0   2iy4_MX_0   2iy4_EC_0   2iy4_PU_0   2iy4_RN_0   2iy4_LE_0   2iy4_NV_0   2iy4_XT_0   2iy4_TM_0   2iy4_KH_0
      2bk6_AF_0   2bk6_FD_0   2bk6_CB_0   2bk6_DA_0   2bkc_BJ_0   2bkc_VR_0   2bkc_QO_0   2bkc_TM_0   2bkc_DI_0   2bkc_GD_0
      2bkc_US_0   2bkc_IG_0   2bkc_JF_0   2bkc_XT_0   2bkc_PU_0   2bkc_YQ_0   2bkc_FB_0   2bkc_MX_0   2bkc_EC_0   2bkc_RN_0
      2bkc_SP_0   2bkc_CL_0   2bkc_OY_0   2bkc_LE_0   2bkc_NV_0   2bjy_AK_0   2bjy_BJ_0   2bjy_IG_0   2bjy_CL_0   2bjy_DI_0
      2bjy_FB_0   2bjy_EC_0   2bjy_LE_0   2bjy_GD_0   2bjy_JF_0   2bjy_HA_0   2bjy_KH_0   2bkc_KH_0   2bkc_AK_0   2bkc_HA_0
      1umn_AK_0   1umn_HA_0   1umn_KH_0   1umn_JF_0   2bw1_AK_0   1umn_EC_0   1umn_IG_0   1umn_CL_0   2bw1_LE_0   1umn_BJ_0
      1umn_LE_0   2cf7_EC_0   2bw1_DI_0   1umn_DI_0   2v15_DI_0   2bw1_CL_0   2bw1_FB_0   2v15_FB_0   2bw1_BJ_0   2bw1_HA_0
      2bw1_JF_0   2cf7_IG_0   2bw1_IG_0   1umn_FB_0   2cf7_CL_0   2cf7_LE_0   2cf7_GD_0   1umn_GD_0   2cf7_FB_0   2cf7_HA_0
      2bw1_EC_0   2ux1_IG_0   2ux1_AK_0   2ux1_FB_0   2ux1_CL_0   2ux1_JF_0   2ux1_HA_0   2ux1_KH_0   2ux1_EC_0   2ux1_DI_0
      2ux1_LE_0   2ux1_BJ_0   2v15_BJ_0   2v15_AK_0   2v15_IG_0   2v15_HA_0   2v15_KH_0   2v15_CL_0   2v15_EC_0   2v15_JF_0
      2v15_LE_0   2bw1_GD_0   2v15_GD_0   2ux1_GD_0   2bw1_KH_0   2cf7_BJ_0   2cf7_DI_0   2cf7_JF_0   2cf7_KH_0   2cf7_AK_0
      2pyb_CA_0   2clb_BD_0   2clb_NP_0   2clb_CB_0   2clb_ON_0   2clb_DC_0   2clb_PO_0

Peptides

PartnerDomains
      Ferritin
(1jre_JH_0,1o9r_AF_0,2z90_CB_0,1uvh_CA_0,1moj_AD_0,2c41_AF_0,1ji4_DL_0,2fjc_AJ_0,2fjc_KE_0,1ji5_CA_0,1jig_DA_0,1n1q
_BD_0,2chp_AD_0,2d5k_AD_0,1qgh_AK_0,1umn_AK_0,2pyb_CA_0)

Dist Members Intf   Alignment
      1jre_JH_0     W     M       R       G     A       N     F       I       A     H
      1o9r_AF_0     W     L       K       G             Q     F       I       A     H
      2z90_CB_0     W             V       G     S       N     F       R       D     H
      1uvh_CA_0     W     V       V       G             N     F       I             H
      1moj_AD_0     W     V       E       G     A       E     F       R       D     H
      2c41_AF_0     W     T       Y       G             L     F       R       D     H
      1ji4_DL_0     W     V       K       G             D     F       F       N     H
      2fjc_AJ_0     W     I       Y       G                   F       K       Q     H
      2fjc_KE_0     W     I       Y       G             E     F       K       Q     H
      1ji5_CA_0     W     V       K       G     P       Q     F       F       T     H
      1jig_DA_0     W     V       T       G     P       H     F       F             H
      1n1q_BD_0     W     V       N       G     P       N     F       F       T     H
      2chp_AD_0     W     V       K       G     P       H     F       F       T     H
      2d5k_AD_0     W     V       K       G     P       N     F       F       S     H
      1qgh_AK_0     W     M       R       G     H       N     F       F       T     H
      1umn_AK_0     W     M       R       G     R       G     F       M       I     H
      2pyb_CA_0     W     I       K             T       N     F       F       V     H
      2clb_BD_0           L       T                                           G     E
      2clb_CB_0           L       T       G                                         K
      2clb_DC_0           L       T       G                           E
Dist Members ResidueID Alignment
      1jre_JH_0   52    54    55        56   57    58     59    60     61    63
      1o9r_AF_0   41    43    44        45         47     48    49     50    52
      2z90_CB_0   42          45        46   47    48     49    50     51    53
      1uvh_CA_0   40    42    43        44         46     47    48           51
      1moj_AD_0   53    55    56        57   58    59     60    61     62    64
      2c41_AF_0   34    36    37        38         40     41    42     43    45
      1ji4_DL_0   26    28    29        30         32     33    34     35    37
      2fjc_AJ_0   58    60    61        62                65    66     67    69
      2fjc_KE_0   58    60    61        62         64     65    66     67    69
      1ji5_CA_0   28    30    31        32   33    34     35    36     37    39
      1jig_DA_0   30    32    33        34   35    36     37    38           41
      1n1q_BD_0   32    34    35        36   37    38     39    40     41    43
      2chp_AD_0   36    38    39        40   41    42     43    44     45    47
      2d5k_AD_0   31    33    34        35   36    37     38    39     40    42
      1qgh_AK_0   32    34    35        36   37    38     39    40     41    43
      1umn_AK_0   48    50    51        52   53    54     55    56     57    59
      2pyb_CA_0   39    41    42             44    45     46    47     48    50
      2clb_BD_0         51    52                                       53    57
      2clb_CB_0         51    52        53                                   60
      2clb_DC_0         51    52        53                      57

Alignment Occupancy       0.85   0.95   1    0.9   0.55   0.8   0.85   0.9   0.8   0.95
Gap in betw Columns       1      0      0    0     0      0     0      0     1,3

SLIM   RegEx        W.[VLMIT][KTRYVNE]G[PAHSTR][NHQEDGL]F[FRIKME][TDAQSNIGV].{1,3}[HKE]
SLIM   Coverage           0.95
SLIM   PSSM Match Cutoff 28.2603997122955
SLIM   I=181997 Im=5024 Id=76 Idm=5
SLIM   PSSM p-value 0.0405679836885469

PSSM Listing
Pos 0 W(10.83) Y(1.837) F(0.837) M(-1.16) C(-2.16) G(-2.16) Q(-2.16) H(-2.16)      L(-2.16) S(-3.16) T(-3.16) A(-3.16)
E(-3.16) R(-3.16) K(-3.16) I(-3.16) V(-3.16) P(-4.16) N(-4.16) D(-4.16)
Gap (1)
Pos 1 V(3.269) M(3.228) I(2.896) L(2.655) T(1.060) F(-0.42) A(-0.50) C(-1.05)      Y(-1.08) S(-1.22) Q(-1.24) P(-1.47)
K(-1.64) D(-1.74) G(-1.77) E(-1.95) R(-2.05) W(-2.18) N(-2.22) H(-2.22)
Gap (0)
Pos 2 Y(5.103) K(3.829) R(3.205) N(3.039) T(2.434) E(2.159) V(1.717) F(1.132)      I(0.750) Q(0.647) H(0.495) D(0.175)
W(0.138) S(0.112) P(-0.32) G(-0.39) M(-0.54) L(-0.86) A(-0.95) C(-1.85)
Gap (0)
Pos 3 G(5.894) T(0.894) S(-0.10) A(-0.10) V(-0.10) D(-1.10) P(-2.10) N(-2.10)      E(-2.10) Q(-2.10) H(-2.10) R(-2.10)
K(-2.10) W(-2.10) C(-3.10) M(-3.10) F(-3.10) Y(-3.10) I(-4.10) L(-4.10)
Gap (0)
Pos 4 P(5.614) H(5.005) R(2.025) A(1.745) T(1.294) S(1.183) K(-0.48) N(-0.69)               D(-0.83) Y(-0.87) Q(-0.88) G(-1.09)
E(-1.11) C(-1.86) M(-2.02) L(-2.63) V(-2.65) I(-2.69) F(-2.94) W(-3.73)
Gap (0)
Pos 5 H(5.698) N(4.954) D(3.102) G(3.024) E(2.797) Q(2.778) L(1.019) S(0.258)              V(0.100) K(-0.03) T(-0.07) Y(-0.15)
R(-0.17) M(-0.59) I(-0.90) A(-1.56) P(-1.81) F(-2.12) W(-2.93) C(-2.94)
Gap (0)
Pos 6 F(5.837) Y(2.837) W(0.837) M(-0.16) I(-0.16) L(-0.16) H(-1.16) V(-1.16)               C(-2.16) S(-2.16) T(-2.16) A(-2.16)
G(-3.16) N(-3.16) D(-3.16) E(-3.16) Q(-3.16) R(-3.16) K(-3.16) P(-4.16)
Gap (0)
Pos 7 F(5.085) R(3.139) K(2.780) I(2.167) M(2.119) Y(2.097) E(2.063) L(0.649)              W(0.120) Q(0.119) V(-0.55) D(-0.78)
H(-0.92) N(-1.09) S(-1.21) T(-1.21) A(-1.43) C(-1.95) P(-2.33) G(-2.72)
Gap (0)
Pos 8 D(4.117) N(3.047) G(3.043) Q(2.730) T(2.468) A(1.766) S(1.385) I(1.340)              V(1.094) E(0.788) P(-0.33) K(-0.38)
L(-0.51) M(-0.65) R(-0.72) H(-0.87) C(-1.40) Y(-1.98) F(-2.01) W(-3.07)
Gap (1,3)
Pos 9 H(7.837) E(2.129) K(2.062) Y(1.839) D(0.992) N(0.879) Q(0.304) R(0.238)              T(-0.05) S(-0.88) F(-1.14) P(-1.88)
A(-1.88) M(-1.96) G(-2.05) V(-2.12) W(-2.12) L(-2.96) I(-3.05) C(-3.08)
//

===============================
 SLIM 113
===============================
ID           Ferritin.clust.0.2.10
Center             3e1j_BG_0
AvSimToCtr 0.767
AvRMSDToCtr 0.295 A
Size         70
NumDistinct 4
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            ESCHERICHIA COLI K12 (1), AZOTOBACTER VINELANDII (1)
Conservation       0.5

Members
      2fkz_BD_0   2fkz_FA_0   2fkz_CE_0   2fkz_GF_0   2fl0_CE_0   2fl0_GF_0   2fl0_BD_0   2vxi_AJ_0   2vxi_JK_0   2vxi_HI_0
      2vxi_BE_0   2vxi_FC_0   2vxi_DA_0   2vxi_KD_0   2vxi_LG_0   3e1l_BG_0   3e1l_IE_0   3e1l_KJ_0   3e1l_CA_0   3e1l_GK_0
      3e1l_HD_0   3e1l_FL_0   3e1l_JB_0   3e1p_BG_0   3e1p_KJ_0   3e1p_CA_0   3e1p_GK_0   3e1p_FL_0   3e1p_HD_0   3e1p_JB_0
      3e1p_IE_0   3e1j_KJ_0   3e1j_CA_0   3e1j_GK_0   3e1j_HD_0   3e1j_FL_0   3e1j_JB_0   3e1q_BG_0   3e1q_CA_0   3e1q_HD_0
      3e1q_JB_0   3e1q_FL_0   3e1q_GK_0   3e1q_IE_0   3e1q_KJ_0   3e1n_BG_0   3e1n_FL_0   3e1n_GK_0   3e1n_IE_0   3e1o_BG_0
      3e1o_KJ_0   3e1o_CA_0   3e1o_GK_0   3e1o_FL_0   3e1o_JB_0   3e1o_HD_0   3e1o_IE_0   3e1m_BG_0   3e1m_CA_0   3e1m_GK_0
      3e1m_IE_0   3bkn_AC_0   3bkn_CI_0   3bkn_FD_0   3bkn_IG_0   3bkn_GA_0   3bkn_KB_0   3bkn_JE_0   3bkn_LJ_0   3e6r_DA_0

Peptides
PartnerDomains
      Ferritin (3bkn_AC_0,3e6r_DA_0)

Dist Members Intf   Alignment
      3e1j_BG_0     N     W      G     L      Q      L     Q     I     R
      2fkz_BD_0     D     W      G     L      E      L     Q     M     D
      3bkn_AC_0     N     W      G     F      A      A     A     V
      3e6r_DA_0           D                   G      R     S

Dist Members ResidueID Alignment
      3e1j_BG_0   34    35    36       37     147    150   151   154   155
      2fkz_BD_0   34    35    36       37     147    150   151   154   155
      3bkn_AC_0   34    35    36       37     147    150   151   154
      3e6r_DA_0         33                    149    152   153

Alignment Occupancy       0.75   1     0.75   0.75   1     1     1     0.75   0.5
Gap in betw Columns       0      0     0      109    2     0     2     0

SLIM   RegEx        [AQGE]..[LAR][QSA]..[MIV][DR]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 16.9089192017722
SLIM   I=181997 Im=7479 Id=76 Idm=3
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 G(4.616) E(3.665) Q(3.665) A(2.645) D(0.798) K(0.395) S(0.357) T(0.240)       R(0.053) N(-0.46) H(-0.56) M(-0.94)
V(-1.10) P(-1.17) C(-1.27) Y(-1.75) L(-1.94) I(-2.10) W(-2.37) F(-2.64)
Gap (2)
Pos 1 R(3.617) L(3.311) A(2.633) V(2.311) M(1.355) I(1.334) K(0.696) S(-0.17)       Q(-0.17) F(-0.60) C(-0.80) N(-1.00)
E(-1.00) H(-1.17) G(-1.22) T(-1.37) Y(-1.37) P(-1.89) W(-2.37) D(-2.56)
Gap (0)
Pos 2 Q(4.311) S(2.696) A(2.675) E(1.395) K(0.531) R(0.433) T(0.240) N(0.240)       D(-0.24) M(-0.37) H(-0.46) G(-0.56)
P(-1) C(-1.00) Y(-1.37) L(-1.64) I(-1.89) V(-2) F(-2.37) W(-2.37)
Gap (2)
Pos 3 M(3.649) I(2.962) V(2.664) L(1.475) F(-0.52) A(-0.83) Q(-1.21) C(-1.28)       Y(-1.28) S(-1.83) T(-1.83) K(-1.97)
R(-2.14) W(-2.14) P(-2.52) E(-2.52) N(-2.83) H(-2.83) D(-3.28) G(-3.52)
Gap (0)
Pos 4 D(4.614) R(3.614) E(0.740) K(0.662) N(-0.07) Q(-0.07) T(-0.25) S(-1.07)       H(-1.07) P(-2.07) A(-2.07) G(-2.07)
M(-2.25) Y(-3.07) L(-3.25) C(-3.69) I(-3.69) V(-3.69) F(-3.69) W(-4.07)
//

===============================
 SLIM 114
===============================
ID          Ferritin.clust.0.2.6
Center            2bkc_SN_0
AvSimToCtr 0.535
AvRMSDToCtr 0.625 A
Size         269
NumDistinct 18
FracDDI           1
FracPeptides      0
FracIntra    0
Species           AGROBACTERIUM TUMEFACIENS (2), HELICOBACTER PYLORI (2), BACILLUS ANTHRACIS (2), TREPONEMA
PALLIDUM (1), LISTERIA MONOCYTOGENES (1), STREPTOCOCCUS SUIS (1), MYCOBACTERIUM SMEGMATIS (1), BACILLUS SUBTILIS
(1), BREVIBACILLUS BREVIS (1), THERMOSYNECHOCOCCUS ELONGATUS (1), LISTERIA INNOCUA (1), ESCHERICHIA COLI (1),
BORRELIA BURGDORFERI (1)
Conservation      0.125

Members
      1dps_AI_0   1dps_BL_0   1dps_DK_0   1dps_CJ_0   1dps_IE_0   1dps_LG_0   1dps_JH_0   1dps_KF_0   1dps_EA_0   1dps_GB_0
      1dps_FD_0   1dps_HC_0   1f33_BC_0   1f33_LJ_0   1f33_EB_0   1f33_IG_0   1f33_CE_0   1f33_KI_0   1f33_GK_0   1f33_DF_0
      1l8i_AI_0   1l8i_BK_0   1l8i_CL_0   1l8i_HB_0   1l8i_JG_0   1l8i_EA_0   1l8i_DJ_0   1l8i_FC_0   1l8i_GD_0   1l8i_IE_0
      1l8i_KH_0   1l8i_LF_0   1jts_AI_0   1jts_UQ_0   1jts_GD_0   1jts_JG_0   1jts_RO_0   1jts_MU_0   1jts_EA_0   1jts_WT_0
      1jts_VS_0   1jts_BK_0   1jts_QM_0   1jts_NW_0   1jts_XR_0   1jts_FC_0   1jts_OX_0   1jts_SP_0   1jts_TN_0   1jts_DJ_0
      1jts_LF_0   1jts_IE_0   1jts_CL_0   1jts_PV_0   1jts_KH_0   1jts_HB_0   1f30_BC_0   1f30_EB_0   1f30_GK_0   1f30_CE_0
      1f30_DF_0   1f30_KI_0   1f30_LJ_0   1f30_IG_0   1jre_AI_0   1jre_JG_0   1jre_CL_0   1jre_EA_0   1jre_HB_0   1jre_BK_0
      1jre_LF_0   1jre_GD_0   1jre_DJ_0   1jre_KH_0   1jre_FC_0   1jre_IE_0   1o9r_AE_0   1o9r_EC_0   1o9r_CA_0   1o9r_DB_0
      3ge4_AE_0   3ge4_LD_0   3ge4_BL_0   3ge4_CA_0   3ge4_GK_0   3ge4_FJ_0   3ge4_HF_0   3ge4_JH_0   3ge4_KI_0   3ge4_EC_0
      3ge4_IG_0   3ge4_DB_0   2fjc_FB_0   1ji4_AK_0   1ji4_IG_0   1ji4_BJ_0   1ji4_HA_0   1ji4_DI_0   1ji4_CL_0   1ji4_GD_0
      1ji4_JF_0   1ji4_KH_0   1ji4_EC_0   1ji4_FB_0   1ji4_LE_0   1qgh_AI_0   1qgh_CJ_0   1qgh_DK_0   1qgh_IE_0   1qgh_BL_0
      1qgh_GB_0   1qgh_LG_0   1qgh_JH_0   1qgh_EA_0   1qgh_FD_0   1qgh_HC_0   1qgh_KF_0   2bkc_AI_0   2bkc_BL_0   2bkc_CJ_0
      2bkc_EA_0   2bkc_XR_0   2bkc_KF_0   2bkc_QM_0   2bkc_DK_0   2bkc_GB_0   2bkc_OV_0   2bkc_JH_0   2bkc_LG_0   2bkc_PX_0
      2bkc_UQ_0   2bkc_TO_0   2bkc_RP_0   2bkc_VT_0   2bkc_FD_0   2bkc_IE_0   2bkc_MU_0   2bkc_YS_0   2bkc_NY_0   2bjy_AI_0
      2bjy_EA_0   2bjy_BL_0   2bjy_FD_0   2bjy_GB_0   2bjy_HC_0   2bjy_LG_0   2bjy_JH_0   2bjy_DK_0   2bjy_CJ_0   2bjy_KF_0
      2bjy_IE_0   2bk6_AE_0   2bk6_CA_0   2bk6_EC_0   2bk6_DB_0   2iy4_AI_0   2iy4_BL_0   2iy4_OV_0   2iy4_VT_0   2iy4_YS_0
      2iy4_EA_0   2iy4_GB_0   2iy4_QM_0   2iy4_FD_0   2iy4_TO_0   2iy4_HC_0   2iy4_RP_0   2iy4_LG_0   2iy4_SN_0   2iy4_JH_0
      2iy4_PX_0   2iy4_UQ_0   2iy4_XR_0   2iy4_IE_0   2iy4_MU_0   2iy4_KF_0   2iy4_CJ_0   2iy4_DK_0   2iy4_NY_0   2bkc_HC_0
      1umn_AI_0   1umn_FD_0   1umn_CJ_0   1umn_IE_0   1umn_EA_0   1umn_BL_0   1umn_HC_0   2cf7_IE_0   1umn_GB_0   1umn_LG_0
      1umn_DK_0   1umn_JH_0   2cf7_CJ_0   2cf7_EA_0   2cf7_HC_0   2cf7_GB_0   2cf7_LG_0   2cf7_JH_0   1umn_KF_0   2bw1_AI_0
      2bw1_DK_0   2bw1_HC_0   2bw1_IE_0   2cf7_BL_0   2bw1_LG_0   2bw1_CJ_0   2cf7_AI_0   2cf7_KF_0   2bw1_FD_0   2bw1_GB_0
      2bw1_JH_0   2bw1_KF_0   2cf7_DK_0   2bw1_EA_0   2ux1_EA_0   2ux1_HC_0   2ux1_IE_0   2ux1_BL_0   2ux1_LG_0   2ux1_AI_0
      2ux1_DK_0   2ux1_KF_0   2v15_KF_0   2ux1_FD_0   2v15_FD_0   2ux1_CJ_0   2v15_AI_0   2ux1_JH_0   2v15_BL_0   2v15_DK_0
      2v15_CJ_0   2v15_HC_0   2v15_IE_0   2v15_JH_0   2v15_GB_0   2v15_LG_0   2v15_EA_0   2ux1_GB_0   2bw1_BL_0   2cf7_FD_0
      1ji5_CB_0   1jig_DB_0   1n1q_BC_0   2c41_AE_0   2c41_BK_0   2c41_DB_0   2c41_LJ_0   2c41_IA_0   2c41_EI_0   2c41_KD_0
      2c41_JG_0   2c41_FC_0   2c41_GL_0   2c41_HF_0   2c41_CH_0   2chp_AC_0   2d5k_AC_0   1uvh_CB_0   2yw6_AC_0   2yw6_BA_0
      2yw6_CB_0   1vel_AB_0   1vel_CA_0   1vel_EF_0   1vel_DE_0   1vel_FD_0   1vel_BC_0   2pyb_CB_0   2z90_CA_0

Peptides
PartnerDomains
      Ferritin
(2bkc_SN_0,1dps_AI_0,1o9r_AE_0,1o9r_EC_0,2fjc_FB_0,1ji4_AK_0,1ji4_CL_0,2iy4_AI_0,1umn_AI_0,1ji5_CB_0,1jig_DB_0,1n1q
_BC_0,2c41_AE_0,2chp_AC_0,2d5k_AC_0,1uvh_CB_0,2pyb_CB_0,2z90_CA_0)

Dist Members Intf   Alignment
      2bkc_SN_0     E     R     L   A     I     G     D     V     D
      1dps_AI_0     E     R     V   Q                 D     D     D
      1o9r_AE_0     E     R     V                     P     T     D
      1o9r_EC_0     E     R     V   Q                 P     T     D
      2fjc_FB_0     E           L   Q                 A     V     G
      1ji4_AK_0     E     R     V   Q                       V     T
      1ji4_CL_0     E     R     V   Q                 K     V     T
      2iy4_AI_0     E     R     L   A     I     G     N     V     D
      1umn_AI_0     E     R     I   T     L     G     S     V     D
      1ji5_CB_0     E     R     L   A     I                 M     D
      1jig_DB_0     E     R     L   A                 A     T     D
      1n1q_BC_0     E     R     L   S     I           E     A     D
      2c41_AE_0     E     R     L   M     L     D     I     G     D
      2chp_AC_0     E     R     L   A     I           N     A     D
      2d5k_AC_0     E     R     L   A                 D     V     D
      1uvh_CB_0     E     R     A   T                 L     V     D
      2pyb_CB_0     E     R     R   M     L     G     Y     G     N
      2z90_CA_0     E     R     R   A     L     D     P     S     D

Dist Members ResidueID Alignment
      2bkc_SN_0   62    63    65    66    67    68    126   127   130
      1dps_AI_0   82    83    85    86                142   143   146
      1o9r_AE_0   71    72    74                      134   135   138
      1o9r_EC_0   71    72    74    75                134   135   138
      2fjc_FB_0   88          91    92                151   152   155
      1ji4_AK_0   56    57    59    60                      120   123
      1ji4_CL_0   56    57    59    60                119   120   123
      2iy4_AI_0   62    63    65    66    67    68    126   127   130
      1umn_AI_0   78    79    81    82    83    84    142   143   146
      1ji5_CB_0   58    59    61    62    63                121   124
      1jig_DB_0   60    61    63    64                122   123   126
      1n1q_BC_0   62    63    65    66    67          124   125   128
      2c41_AE_0   64    65    67    68    69    70    126   127   130
      2chp_AC_0   66    67    69    70    71          128   129   132
      2d5k_AC_0   61    62    64    65                123   124   127
      1uvh_CB_0   70    71    73    74                132   133   136
      2pyb_CB_0   69    70    72    73    74    75    133   134   137
      2z90_CA_0   72    73    75    76    77    78    134   135   138
Alignment Occupancy       1       0.944 1       0.944 0.5   0.333 0.888 1           1
Gap in betw Columns       0       1     0       0     56,58 0     2

SLIM   RegEx        ER.[LVRAI][AQMTS][IL]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 16.0695822667417
SLIM   I=181997 Im=9235 Id=76 Idm=2
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(5) D(2) Q(2) K(1) S(0) T(0) N(0) H(0) R(0) P(-1) A(-1) G(-2) M(-2) Y(-2) I(-3)                 L(-3) V(-3) F(-3) W(-3) C(-4)
Gap (0)
Pos 1 R(4.942) K(1.942) Q(0.942) N(-0.05) E(-0.05) H(-0.05) S(-1.05) T(-1.05) A(-1.05)                 M(-1.05) P(-2.05) G(-2.05)
D(-2.05) L(-2.05) Y(-2.05) C(-3.05) I(-3.05) V(-3.05) F(-3.05) W(-3.05)
Gap (1)
Pos 2 L(3.349) V(3.233) R(2.809) I(2.512) M(1.539) A(1.268) K(-0.05) F(-0.39) Q(-0.84)                 C(-1.00) Y(-1.11) S(-1.18)
E(-1.62) T(-1.74) N(-1.75) H(-1.83) P(-2.29) G(-2.35) W(-2.37) D(-3.03)
Gap (0)
Pos 3 Q(3.729) A(3.071) M(2.831) T(1.898) S(1.549) E(0.865) K(0.100) L(0.023) R(0.000)                 G(-0.23) N(-0.35) D(-0.36)
P(-0.53) C(-0.68) I(-0.73) H(-0.74) Y(-1.52) F(-1.60) V(-2.05) W(-2.24)
Gap (0)
Pos 4 I(2.821) L(2.652) V(1.652) M(0.874) F(-0.69) C(-1.69) A(-1.69) Y(-1.69) S(-2.69)                 T(-2.69) Q(-3.12) R(-3.12)
K(-3.12) W(-3.12) P(-3.69) N(-3.69) E(-3.69) H(-3.69) D(-4.02) G(-4.69)
//

===============================
 SLIM 115
===============================
ID           Ferritin.clust.0.2.7
Center             3e1q_AB_0
AvSimToCtr 0.678
AvRMSDToCtr 0.478 A
Size         225
NumDistinct 6
FracDDI            1
FracPeptides       0
FracIntra    0
Species            DESULFOVIBRIO DESULFURICANS (2), ESCHERICHIA COLI (1), AZOTOBACTER VINELANDII (1)
Conservation       0.5

Members
      1bcf_AB_0   1bcf_KL_0   1bcf_EF_0   1bcf_CD_0   1bcf_IJ_0   1bcf_GH_0   1bcf_BA_0   1bcf_LK_0   1bcf_FE_0   1bcf_DC_0
      1bcf_JI_0   1bcf_HG_0   1bfr_AB_0   1bfr_GH_0   1bfr_UV_0   1bfr_KL_0   1bfr_IJ_0   1bfr_EF_0   1bfr_MN_0   1bfr_CD_0
      1bfr_OP_0   1bfr_QR_0   1bfr_ST_0   1bfr_WX_0   1bfr_BA_0   1bfr_HG_0   1bfr_VU_0   1bfr_LK_0   1bfr_FE_0   1bfr_TS_0
      1bfr_JI_0   1bfr_NM_0   1bfr_RQ_0   1bfr_DC_0   1bfr_PO_0   1bfr_XW_0   2htn_AB_0   2htn_BA_0   2htn_CD_0   2htn_DC_0
      2htn_GH_0   2htn_HG_0   2htn_EF_0   2htn_FE_0   2vxi_AB_0   2vxi_DC_0   2vxi_FE_0   2vxi_JI_0   2vxi_KL_0   2vxi_EF_0
      2vxi_GH_0   2vxi_HG_0   2vxi_IJ_0   2vxi_LK_0   2vxi_BA_0   2vxi_CD_0   3e1l_AB_0   3e1l_KL_0   3e1l_BA_0   3e1l_LK_0
      3e1l_CD_0   3e1l_DC_0   3e1l_GH_0   3e1l_EF_0   3e1l_JI_0   3e1l_IJ_0   3e1l_HG_0   3e1l_FE_0   3e1p_AB_0   3e1p_KL_0
      3e1p_BA_0   3e1p_LK_0   3e1p_CD_0   3e1p_GH_0   3e1p_DC_0   3e1p_HG_0   3e1p_EF_0   3e1p_IJ_0   3e1p_FE_0   3e1p_JI_0
      3e1q_KL_0   3e1q_BA_0   3e1q_LK_0   3e1q_DC_0   3e1q_HG_0   3e1q_CD_0   3e1q_GH_0   3e1q_EF_0   3e1q_IJ_0   3e1q_FE_0
      3e1q_JI_0   3e1j_AB_0   3e1j_KL_0   3e1j_BA_0   3e1j_LK_0   3e1j_CD_0   3e1j_DC_0   3e1j_GH_0   3e1j_HG_0   3e1j_EF_0
      3e1j_IJ_0   3e1j_FE_0   3e1j_JI_0   3e1n_AB_0   3e1n_CD_0   3e1n_DC_0   3e1n_GH_0   3e1n_KL_0   3e1n_HG_0   3e1n_BA_0
      3e1n_LK_0   3e1n_EF_0   3e1n_IJ_0   3e1n_FE_0   3e1n_JI_0   3e1o_AB_0   3e1o_KL_0   3e1o_BA_0   3e1o_LK_0   3e1o_CD_0
      3e1o_GH_0   3e1o_FE_0   3e1o_JI_0   3e1o_DC_0   3e1o_HG_0   3e1o_EF_0   3e1o_IJ_0   3e1m_AB_0   3e1m_BA_0   3e1m_LK_0
      3e1m_KL_0   3e1m_CD_0   3e1m_DC_0   3e1m_HG_0   3e1m_EF_0   3e1m_FE_0   3e1m_JI_0   3e1m_IJ_0   3e1m_GH_0   3e2c_AB_0
      3e2c_BA_0   1sof_AB_0   1sof_BA_0   1sof_CD_0   1sof_GH_0   1sof_DC_0   1sof_HG_0   1sof_EF_0   1sof_FE_0   2fkz_CD_0
      2fkz_GH_0   2fkz_DC_0   2fkz_HG_0   2fl0_DC_0   2fl0_HG_0   2fl0_CD_0   2fl0_GH_0   2fkz_AB_0   2fkz_BA_0   2fkz_EF_0
      2fkz_FE_0   2fl0_EF_0   2fl0_FE_0   2fl0_AB_0   2fl0_BA_0   3bkn_AB_0   3bkn_BA_0   3bkn_EF_0   3bkn_FE_0   3bkn_CD_0
      3bkn_IJ_0   3bkn_GH_0   3bkn_DC_0   3bkn_JI_0   3bkn_HG_0   3fvb_AB_0   3fvb_BA_0   1nf4_AB_0   1nf4_EF_0   1nf4_BA_0
      1nf4_FE_0   1nf4_GH_0   1nf4_MN_0   1nf4_OP_0   1nf4_HG_0   1nf4_NM_0   1nf4_PO_0   1nf4_CD_0   1nf6_AB_0   1nf4_IJ_0
      1nf4_KL_0   1nf4_DC_0   1nf4_JI_0   1nf6_BA_0   1nf4_LK_0   1nf6_CD_0   1nf6_IJ_0   1nf6_DC_0   1nf6_JI_0   1nf6_LK_0
      1nf6_EF_0   1nf6_NM_0   1nf6_OP_0   1nf6_FE_0   1nf6_MN_0   1nf6_GH_0   1nf6_HG_0   1nf6_KL_0   1nfv_AB_0   1nfv_EF_0
      1nfv_BA_0   1nfv_FE_0   1nfv_NM_0   1nfv_GH_0   1nfv_MN_0   1nfv_KL_0   1nfv_HG_0   1nfv_LK_0   1nfv_OP_0   1nfv_PO_0
      1nfv_DC_0   1nfv_JI_0   1nfv_CD_0   1nfv_IJ_0   1nf6_PO_0

Peptides

PartnerDomains
      Ferritin (3e1q_AB_0,1sof_AB_0,3bkn_AB_0,3fvb_AB_0,1nf4_AB_0,1nf4_BA_0)

Dist Members Intf   Alignment
      3e1q_AB_0     L     N       F       L     R       M     K       N       M     D       I     E       L       F     P     L    Q
      L     G       K     L
      1sof_AB_0     L     N       F       L     R       M     E       D       M     D       I     K       L       F     P     L    Q
      L     G       K     L
      3bkn_AB_0     L     N       F       L     K       M             N       M     E       T     D       L       L     P     Y    Q
      L             S     L
      3fvb_AB_0     L     N       W       L     R       L             D       M     D       I     D       I             P     L    Q
                    P     L
      1nf4_AB_0     L     H       M       N     Y       S     D       D       M     E       A     E       K             P     T
      1nf4_BA_0     L     H       M       N     Y       S     D       D       M     E       A     E       K       E     P     T

Dist Members ResidueID Alignment
      3e1q_AB_0   19    23    26          27    30      31    33      34      52    56      59    60      63      64    69    71
      72    74    75    76    77
      1sof_AB_0   19    23    26          27    30      31    33      34      52    56      59    60      63      64    69    71
      72    74    75    76    77
      3bkn_AB_0   19    23    26          27    30      31            34      52    56      59    60      63      64    69    71
      72    74          76    77
        3fvb_AB_0   19    23    26    27    30    31          34    52       56   59   60   63        69    71
        72                76    77
        1nf4_AB_0   24    28    31    32    35    36    38    39    57       61   64   65   68        74    76
        1nf4_BA_0   24    28    31    32    35    36    38    39    57       61   64   65   68   69   74    76

Alignment Occupancy     1     1     1       1     1     1     0.666 1        1    1    1    1    1    0.666 1     1
      0.666 0.5   0.333 0.666 0.666
Gap in betw Columns     3     2     0       2     0     1     0     17       3    2    0    2    0    4     1     0
      1     1     0

SLIM   RegEx        M.{3}[DE]..[IAT][EDK]..[LKI][FEL].{4}P.[LTY]Q.L.[KSP]L
SLIM   Coverage           0.666666666666667
SLIM   PSSM Match Cutoff 24.4672071664338
SLIM   I=181997 Im=6655 Id=76 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 M(5) L(2) I(1) Q(0) F(0) C(-1) S(-1) T(-1) A(-1) R(-1) K(-1) Y(-1) W(-1) P(-2) N(-2) E(-2) H(-2) V(-2) G(-3)
D(-3)
Gap (3)
Pos 1 D(5.325) E(4.355) Q(1.433) T(0.620) N(0.620) K(0.433) S(0) H(-0.37) R(-0.56) P(-1) A(-1.37) G(-1.37) M(-2.37)
Y(-2.37) I(-3) V(-3) F(-3) C(-3.37) L(-3.37) W(-3.37)
Gap (2)
Pos 2 I(3.312) A(2.914) T(2.228) L(1.345) M(0.433) S(0.355) V(0.355) G(-0.22) P(-0.50) C(-0.54) F(-0.56) D(-0.64)
N(-1.15) E(-1.15) Q(-1.15) K(-1.15) Y(-1.37) H(-1.44) R(-1.56) W(-3)
Gap (0)
Pos 3 D(4.928) E(4.345) K(3.266) Q(1.499) R(0.574) T(0.452) N(0.452) S(0) H(-0.37) P(-1) A(-1.23) G(-1.54) M(-1.92)
Y(-2.23) L(-2.92) I(-3) V(-3) F(-3) W(-3.23) C(-3.37)
Gap (2)
Pos 4 K(3.902) L(3.352) I(2.550) V(2.352) M(1.451) R(0.931) Q(-0.01) E(-0.06) F(-0.38) S(-0.85) T(-0.85) A(-1) N(-
1.00) Y(-1.23) C(-1.33) P(-1.85) H(-1.85) D(-1.96) W(-2.37) G(-2.85)
Gap (0)
Pos 5 F(4.902) E(3.209) L(2.245) Y(1.913) V(1.246) M(0.462) I(0.453) Q(0.239) D(0.224) W(-0.06) K(-0.70) H(-1.21)
S(-1.45) T(-1.45) R(-1.58) N(-1.65) A(-1.78) C(-2.21) P(-2.58) G(-3.16)
Gap (4)
Pos 6 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3) F(-
4) W(-4)
Gap (1)
Pos 7 Y(5.209) L(3.310) T(2.906) V(2.317) F(1.359) M(1.355) I(1.335) H(0.463) W(0.274) S(-0.00) P(-0.06) G(-0.07)
D(-0.07) Q(-0.77) K(-0.85) N(-0.96) E(-0.96) C(-1.11) A(-1.11) R(-1.54)
Gap (0)
Pos 8 Q(4.594) E(1.594) R(0.594) K(0.594) S(-0.40) T(-0.40) N(-0.40) D(-0.40) H(-0.40) M(-0.40) P(-1.40) A(-1.40)
Y(-1.40) G(-2.40) L(-2.40) V(-2.40) W(-2.40) C(-3.40) I(-3.40) F(-3.40)
Gap (1)
Pos 9 L(3.306) V(2.306) M(1.306) I(1.306) F(-0.69) C(-1.69) A(-1.69) Y(-1.69) S(-2.69) T(-2.69) Q(-2.69) R(-2.69)
K(-2.69) W(-2.69) P(-3.69) N(-3.69) E(-3.69) H(-3.69) G(-4.69) D(-4.69)
Gap (1)
Pos 10 P(5.209) K(3.905) S(2.250) R(0.934) T(0.214) E(0.125) Q(0.125) N(-0.16) A(-0.45) D(-1.04) G(-1.45) H(-1.57)
M(-1.57) C(-2.45) L(-2.57) Y(-2.57) V(-2.78) I(-3.04) F(-3.16) W(-3.57)
Gap (0)
Pos 11 L(3.594) V(2.594) M(1.594) I(1.594) F(-0.40) C(-1.40) A(-1.40) Y(-1.40) S(-2.40) T(-2.40) Q(-2.40) R(-2.40)
K(-2.40) W(-2.40) P(-3.40) N(-3.40) E(-3.40) H(-3.40) G(-4.40) D(-4.40)
//

===============================
 SLIM 116
===============================
ID           Ferritin.clust.0.25.9
Center             3e1q_BH_0
AvSimToCtr 0.659
AvRMSDToCtr 0.494 A
Size         155
NumDistinct 7
FracDDI            0.428571428571429
FracPeptides       0
FracIntra    0
Species            HALOBACTERIUM SALINARIUM (1), RHODOBACTER CAPSULATUS (1), ESCHERICHIA COLI (1), AZOTOBACTER
VINELANDII (1), DESULFOVIBRIO DESULFURICANS (1), SULFOLOBUS SOLFATARICUS (1)
Conservation       0.166666666666667

Members
      1bcf_BC_0   1bcf_GJ_0   1bcf_LB_0   1bcf_CL_0   1bcf_DE_0   1bcf_JF_0   1bcf_FG_0   1bcf_HA_0   1bfr_AW_0   1bfr_CL_0
      1bfr_OX_0   1bfr_MK_0   1bfr_EU_0   1bfr_GJ_0   1bfr_SV_0   1bfr_KT_0   1bfr_QI_0   1bfr_BC_0   1bfr_DE_0   1bfr_HA_0
      1bfr_TM_0   1bfr_FG_0   1bfr_RS_0   1bfr_PQ_0   1bfr_NO_0   1bfr_WH_0   1bfr_IP_0   1bfr_JF_0   1bfr_VR_0   1bfr_LB_0
      1bfr_XN_0   1bfr_UD_0   2vxi_AI_0   2vxi_BF_0   2vxi_FD_0   2vxi_JL_0   2vxi_DB_0   2vxi_KC_0   2vxi_LH_0   2vxi_HJ_0
      3e1j_BH_0   3e1j_HC_0   3e1j_IF_0   3e1j_KI_0   3e1j_CB_0   3e1j_FK_0   3e1j_JA_0   3e1j_GL_0   3e1o_BH_0   3e1o_IF_0
      3e1o_KI_0   3e1o_FK_0   3e1o_JA_0   3e1o_HC_0   3e1o_CB_0   3e1o_GL_0   3e1m_BH_0   3e1m_IF_0   3e1m_CB_0   3e1m_GL_0
      3e1m_KI_0   3e1m_FK_0   3e1m_JA_0   3e1m_HC_0   3e1n_BH_0   3e1n_IF_0   3e1n_CB_0   3e1n_GL_0   3e1n_KI_0   3e1n_FK_0
      3e1n_JA_0   3e1n_HC_0   3e1q_IF_0   3e1q_CB_0   3e1q_GL_0   3e1q_KI_0   3e1q_FK_0   3e1q_HC_0   3e1q_JA_0   3e1l_BH_0
      3e1l_IF_0   3e1l_FK_0   3e1l_HC_0   3e1l_JA_0   3e1l_CB_0   3e1l_GL_0   3e1l_KI_0   3e1p_BH_0   3e1p_CB_0   3e1p_GL_0
      3e1p_KI_0   3e1p_FK_0   3e1p_JA_0   3e1p_HC_0   3e1p_IF_0   2htn_AG_0   2htn_FH_0   2htn_HD_0   2htn_DF_0   1sof_BC_0
      2fkz_BC_0   2fl0_BC_0   2fl0_FB_0   1sof_CF_0   1sof_GE_0   1sof_FB_0   2fkz_CF_0   2fkz_GE_0   2fkz_FB_0   2fl0_CF_0
      2fl0_GE_0   1jgc_AC_0   1jgc_CB_0   1jgc_BA_0   3bkn_AD_0   3bkn_CJ_0   3bkn_HL_0   3bkn_FC_0   3bkn_KA_0   3bkn_GB_0
      3bkn_IH_0   3bkn_JF_0   3bkn_DK_0   3bkn_LI_0   1moj_AC_0   1tjo_AC_0   1tk6_AC_0   1tkp_AC_0   1tko_AC_0   1nf4_BG_0
      1nfv_BG_0   1nf6_BG_0   1nf4_ED_0   1nf4_NB_0   1nf4_FK_0   1nf4_IH_0   1nf4_PF_0   1nfv_PF_0   1nf4_KP_0   1nf6_NB_0
      1nfv_NB_0   1nfv_ED_0   1nfv_IH_0   1nfv_FK_0   1nf6_PF_0   1nf4_GN_0   1nfv_GN_0   1nf6_GN_0   1nf6_KP_0   1nfv_KP_0
      1nf6_FK_0   1nf6_IH_0   1nf6_ED_0   2clb_CA_0   2clb_OM_0

Peptides
PartnerDomains
      Ferritin (3e1q_BH_0,1sof_BC_0,1jgc_AC_0)

Dist Members Intf   Alignment
      3e1q_BH_0     M     R     F     E     D     H     D     Y     V     R     D     E
      1sof_BC_0     M     R     F     E     E     G     D     Y     A     R     E
      1jgc_AC_0     M     R     F     E                 D     I     V     K     N
      3bkn_AD_0     M     R     L           R     Q     D     A     T           R
      1moj_AC_0           R     A           E     G     D     H     A           H
      1nf4_BG_0           R     E           K     G           I     V           R     R
      2clb_CA_0           R     E           G           D     P     R           D     R

Dist Members ResidueID Alignment
      3e1q_BH_0   1     61    64      66    109   112   113   114   115   117   118   122
      1sof_BC_0   1     61    64      66    109   112   113   114   115   117   118
      1jgc_AC_0   1     61    64      66                113   114   115   117   118
      3bkn_AD_0   1     61    64            109   112   113   114   115         118
      1moj_AC_0         84    87            141   144   145   146   147         150
      1nf4_BG_0         66    69            114   117         119   120         123   127
      2clb_CA_0         80    83            140         142   143   144         147   151

Alignment Occupancy       0.571 1     1     0.428 0.857 0.714 0.857 1     1     0.428 1     0.428
Gap in betw Columns       59    2     44,56 2     0     0     0     2

SLIM   RegEx        [EDKRG]..[GHQ]D[IYHAP][VATR]..[DRHNE]
SLIM   Coverage           0.714285714285714
SLIM   PSSM Match Cutoff 22.8252970185807
SLIM   I=181997 Im=7341 Id=76 Idm=6
SLIM   PSSM p-value 0.0527341211842328

PSSM Listing
Pos 0 D(4.092) G(4.056) E(3.784) K(3.140) R(3.117) Q(1.115) T(0.229) N(-0.02)   S(-0.26) H(-0.59) A(-0.98) P(-1.39)
V(-1.72) M(-1.84) Y(-2.39) L(-2.84) W(-2.98) F(-3.15) I(-3.26) C(-3.39)
Gap (2)
Pos 1 H(6.054) G(5.152) Q(3.063) T(0.372) E(0.228) Y(0.121) D(-0.37) S(-0.47)   N(-0.52) R(-0.52) A(-0.69) K(-0.69)
V(-0.76) M(-1.69) P(-2.04) W(-2.33) F(-2.51) C(-3.33) L(-3.37) I(-3.81)
Gap (0)
Pos 2 D(5.845) E(1.845) T(0.845) N(0.845) S(-0.15) Q(-0.15) P(-1.15) G(-1.15)   H(-1.15) K(-1.15) A(-2.15) R(-2.15)
C(-3.15) M(-3.15) I(-3.15) V(-3.15) F(-3.15) Y(-3.15) L(-4.15) W(-4.15)
Gap (0)
Pos 3 H(6.059) Y(5.751) P(5.054) I(2.758) A(2.081) F(1.808) L(0.825) W(0.767)   M(-0.02) V(-0.06) T(-0.41) S(-0.56)
N(-0.60) D(-0.71) Q(-1.00) C(-1.20) E(-1.20) R(-1.31) K(-1.55) G(-1.60)
Gap (0)
Pos 4 V(3.155) R(3.062) A(2.780) I(2.167) T(2.081) M(0.318) K(0.308) L(0.269) S(0.243) G(-0.33) Q(-0.36) P(-0.56)
C(-0.68) D(-0.76) E(-0.80) N(-0.88) H(-1.06) Y(-1.44) F(-1.50) W(-3)
Gap (2)
Pos 5 H(6.055) D(4.763) N(4.081) R(3.758) E(3.173) K(1.029) Q(0.876) T(0.270) Y(0.137) S(-0.02) G(-1.12) P(-1.44)
A(-1.44) M(-1.72) F(-2.35) L(-2.72) V(-2.78) I(-3) W(-3.02) C(-3.09)
//

===============================
 SLIM 117
===============================
ID           Ferritin.clust.0.3.12
Center             2jd6_NQ_0
AvSimToCtr 0.665
AvRMSDToCtr 0.455 A
Size         126
NumDistinct 6
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            THERMOTOGA MARITIMA MSB8 (2), ESCHERICHIA COLI (1), HELICOBACTER PYLORI (1), ARCHAEOGLOBUS
FULGIDUS (1)
Conservation       0.4

Members
      1eum_AC_0   1eum_DE_0   3bve_AC_0   3bvf_AC_0   3bvf_DE_0   3bvl_AC_0   3bvl_DE_0   3bve_DE_0   3bvk_AC_0   3bvk_DE_0
      3bvi_AC_0   3bvi_DE_0   3egm_AC_0   3egm_DE_0   1s3q_AE_0   1s3q_GK_0   1s3q_DA_0   1s3q_ED_0   1s3q_KJ_0   1s3q_JG_0
      1sq3_DA_0   1sq3_AE_0   1sq3_KJ_0   1sq3_JG_0   1sq3_ED_0   1sq3_GK_0   1vlg_AC_0   1vlg_GA_0   1vlg_DE_0   1z4a_DE_0
      1z4a_FD_0   1z4a_EF_0   1vlg_CG_0   1z4a_AB_0   2jd6_16_0   2jd7_16_0   2jd8_16_0   2jd6_65_0   2jd8_65_0   2jd7_65_0
      2jd6_LN_0   2jd7_LN_0   2jd8_LN_0   2jd6_QL_0   2jd7_QL_0   2jd8_QL_0   2jd6_RH_0   2jd7_RH_0   2jd8_RH_0   2jd6_98_0
      2jd7_98_0   2jd8_98_0   2jd6_PM_0   2jd7_PM_0   2jd8_PM_0   2jd6_51_0   2jd7_51_0   2jd8_51_0   2jd6_JG_0   2jd7_JG_0
      2jd8_JG_0   2jd7_NQ_0   2jd8_NQ_0   2jd6_SX_0   2jd7_SX_0   2jd8_SX_0   2jd6_DA_0   2jd7_DA_0   2jd8_DA_0   2jd6_UT_0
      2jd7_UT_0   2jd8_UT_0   2jd6_HK_0   2jd8_HK_0   2jd7_HK_0   2jd6_BE_0   2jd7_BE_0   2jd8_BE_0   2jd6_KR_0   2jd8_KR_0
      2jd7_KR_0   2jd6_2Y_0   2jd6_XW_0   2jd7_XW_0   2jd8_XW_0   2jd7_2Y_0   2jd8_2Y_0   2jd6_70_0   2jd7_70_0   2jd8_70_0
      2jd6_32_0   2jd7_32_0   2jd8_32_0   2jd6_OP_0   2jd6_AC_0   2jd7_AC_0   2jd8_AC_0   2jd7_OP_0   2jd8_OP_0   2jd6_49_0
      2jd7_49_0   2jd8_49_0   2jd6_Z7_0   2jd7_Z7_0   2jd8_Z7_0   2jd6_GI_0   2jd7_GI_0   2jd8_GI_0   2jd6_84_0   2jd8_84_0
      2jd7_84_0   2jd6_Y3_0   2jd7_Y3_0   2jd8_Y3_0   2jd6_WS_0   2jd7_WS_0   2jd8_WS_0   2jd6_MO_0   2jd7_MO_0   2jd8_MO_0
      2jd6_CD_0   2jd7_CD_0   2jd8_CD_0   2jd6_IJ_0   2jd7_IJ_0   2jd8_IJ_0

Peptides

PartnerDomains
      Ferritin (2jd6_NQ_0,1eum_AC_0,3bve_AC_0)

Dist Members Intf Alignment
      2jd6_NQ_0   M     Y         D       R     N       Y     S       R       A     F       E
        1eum_AC_0         Y     D     T     G     Y     P     F     N
        3bve_AC_0         F     E     N     N     H     A     F     N
        1s3q_AE_0         F     E     R           F     A     Y     N
        1vlg_AC_0         Y     E     R           H     A           S     F     K
        1vlg_CG_0   V     Y     E     R           H     A           S     F     K

Dist Members ResidueID Alignment
      2jd6_NQ_0   1     60    63      64    65    114   115   117   118   119   121
      1eum_AC_0         60    63      64    65    114   115   117   118
      3bve_AC_0         60    63      64    65    114   115   117   118
      1s3q_AE_0         62    65      66          116   117   119   120
      1vlg_AC_0         62    65      66          116   117         120   121   123
      1vlg_CG_0   3     62    65      66          116   117         120   121   123

Alignment Occupancy       0.333 1     1     1     0.5   1     1     0.666 1     0.5   0.5
Gap in betw Columns       2     0     0     48    0     1     0     0     1

SLIM   RegEx        [HYF][ASP].[FRY][NSA]F.[KE]
SLIM   Coverage           0.666666666666667
SLIM   PSSM Match Cutoff 19.5051096870155
SLIM   I=181997 Im=5704 Id=76 Idm=2
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 H(7.308) Y(5.920) F(4.305) W(1.093) N(0.345) D(0.325) Q(-0.46) T(-0.56) E(-0.59) R(-0.59) M(-1.03) I(-1.15)
L(-1.15) S(-1.37) V(-1.37) K(-1.43) A(-2) C(-2.37) G(-2.37) P(-2.43)
Gap (0)
Pos 1 P(5.209) A(3.608) S(2.395) T(0.140) G(-0.15) N(-0.27) C(-0.30) E(-0.74) Q(-0.74) K(-0.74) R(-1.11) M(-1.11)
D(-1.14) I(-1.28) L(-1.28) H(-1.74) V(-2) Y(-2.11) F(-2.15) W(-3.11)
Gap (1)
Pos 2 Y(5.244) F(4.926) R(3.209) W(0.763) H(0.419) K(0.239) Q(-0.63) M(-0.78) L(-0.87) I(-0.90) N(-1.58) E(-1.58)
V(-1.64) S(-2.04) T(-2.04) A(-2.04) C(-2.57) G(-3.04) D(-3.04) P(-3.29)
Gap (0)
Pos 3 N(5.311) S(2.996) A(2.309) D(0.539) T(0.383) G(0) E(-0.11) Q(-0.11) K(-0.11) R(-0.37) H(-1.11) C(-1.15) P(-
1.37) M(-1.37) Y(-2) I(-2.03) L(-2.03) V(-2.37) F(-2.37) W(-3.37)
Gap (0)
Pos 4 F(5.306) Y(2.306) W(0.306) M(-0.69) I(-0.69) L(-0.69) H(-1.69) V(-1.69) C(-2.69) S(-2.69) T(-2.69) A(-2.69)
G(-3.69) N(-3.69) D(-3.69) E(-3.69) Q(-3.69) R(-3.69) K(-3.69) P(-4.69)
Gap (1)
Pos 5 K(3.910) E(3.244) R(0.966) Q(0.759) D(0.303) S(-0.69) T(-0.69) N(-0.69) H(-1.24) P(-1.69) A(-1.69) M(-1.92)
G(-2.69) Y(-2.69) L(-2.92) I(-3.69) V(-3.69) F(-3.69) W(-3.69) C(-3.92)
//

===============================
 SLIM 118
===============================
ID           Ferritin.clust.0.3.13
Center             2jd6_QN_0
AvSimToCtr 0.695
AvRMSDToCtr 0.452 A
Size         126
NumDistinct 7
FracDDI            0.571428571428571
FracPeptides       0
FracIntra    0
Species            HELICOBACTER PYLORI (2), ARCHAEOGLOBUS FULGIDUS (2), ESCHERICHIA COLI (1), THERMOTOGA MARITIMA
MSB8 (1)
Conservation       0.333333333333333

Members
      1eum_CA_0   1eum_ED_0   3bve_CA_0   3bvf_CA_0   3bvf_ED_0   3bve_ED_0   3bvl_ED_0   3bvk_CA_0   3bvk_ED_0   3bvl_CA_0
      3bvi_CA_0   3egm_CA_0   3egm_ED_0   3bvi_ED_0   1s3q_AD_0   1s3q_EA_0   1s3q_KG_0   1s3q_DE_0   1s3q_JK_0   1s3q_GJ_0
      1sq3_AD_0   1sq3_DE_0   1sq3_EA_0   1sq3_JK_0   1sq3_GJ_0   1sq3_KG_0   1vlg_AG_0   1vlg_CA_0   1vlg_ED_0   1z4a_DF_0
      1z4a_FE_0   1z4a_ED_0   1vlg_GC_0   1z4a_BA_0   2jd6_15_0   2jd7_15_0   2jd8_15_0   2jd6_56_0   2jd8_56_0   2jd6_LQ_0
      2jd7_LQ_0   2jd8_LQ_0   2jd6_61_0   2jd7_61_0   2jd8_61_0   2jd6_NL_0   2jd7_NL_0   2jd8_NL_0   2jd6_HR_0   2jd7_HR_0
      2jd8_HR_0   2jd7_QN_0   2jd8_QN_0   2jd6_Y2_0   2jd7_Y2_0   2jd8_Y2_0   2jd6_WX_0   2jd7_WX_0   2jd8_WX_0   2jd6_89_0
      2jd7_89_0   2jd8_89_0   2jd6_MP_0   2jd7_MP_0   2jd8_MP_0   2jd6_EB_0   2jd7_EB_0   2jd8_EB_0   2jd6_RK_0   2jd8_RK_0
      2jd7_RK_0   2jd6_PO_0   2jd8_PO_0   2jd7_PO_0   2jd6_AD_0   2jd7_AD_0   2jd8_AD_0   2jd6_TU_0   2jd7_TU_0   2jd8_TU_0
      2jd6_KH_0   2jd8_KH_0   2jd7_KH_0   2jd7_56_0   2jd6_Z0_0   2jd7_Z0_0   2jd8_Z0_0   2jd6_GJ_0   2jd7_GJ_0   2jd8_GJ_0
      2jd6_3Y_0   2jd7_3Y_0   2jd8_3Y_0   2jd6_48_0   2jd8_48_0   2jd7_48_0   2jd6_23_0   2jd7_23_0   2jd8_23_0   2jd6_94_0
      2jd8_94_0   2jd7_94_0   2jd6_XS_0   2jd7_XS_0   2jd8_XS_0   2jd6_IG_0   2jd7_IG_0   2jd8_IG_0   2jd6_7Z_0   2jd7_7Z_0
      2jd8_7Z_0   2jd6_CA_0   2jd7_CA_0   2jd8_CA_0   2jd6_OM_0   2jd7_OM_0   2jd8_OM_0   2jd6_DC_0   2jd7_DC_0   2jd8_DC_0
      2jd6_JI_0   2jd7_JI_0   2jd8_JI_0   2jd6_SW_0   2jd7_SW_0   2jd8_SW_0

Peptides

PartnerDomains
      Ferritin (2jd6_QN_0,1eum_CA_0,3bve_CA_0,3bvk_ED_0)

Dist Members Intf Alignment
      2jd6_QN_0   Y     Y         A       A     E       R     E       I       N     V       E     A       K       D
      1eum_CA_0         N         A       H     M       F     Q       V       S     H             K       K
      3bve_CA_0         N         V       D     I       F     Q       V       A     H                     K       D
      3bvk_ED_0         N         V       D     I       F     Q       V       A     H             V       K       D
      1s3q_AD_0         H         V       E             Y     Q       V       A     V             A
      1s3q_DE_0         H         V       E             Y     Q       V       A     V       E     A
      1vlg_AG_0         Y         L       E                   K       V       D     V       E     D       R

Dist Members ResidueID Alignment
      2jd6_QN_0   91    102   105         106   109     117   121     124     125   128     131   132     135     139
        1eum_CA_0         102   105   106   109   117   121   124      125   128         132   135
        3bve_CA_0         102   105   106   109   117   121   124      125   128               135   139
        3bvk_ED_0         102   105   106   109   117   121   124      125   128         132   135   139
        1s3q_AD_0         104   107   108         119   123   126      127   130         134
        1s3q_DE_0         104   107   108         119   123   126      127   130   133   134
        1vlg_AG_0         104   107   108               123   126      127   130   133   134   137

Alignment Occupancy       0.142 1     1     1     0.571 0.857 1        1     1     1     0.428 0.857 0.714 0.428
Gap in betw Columns       2     0     2     7     3     2     0        2     3     2

SLIM   RegEx        [FYR].{3}[QKE]..[VI][ASDN]..[VH].{3}[ADKV]..[KR]
SLIM   Coverage           0.857142857142857
SLIM   PSSM Match Cutoff 20.9267998252001
SLIM   I=181997 Im=5739 Id=76 Idm=1
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Y(5.774) F(5.185) R(3.056) W(1.188) H(0.880) K(0.109) M(-0.53) L(-0.59) I(-0.61) Q(-0.66) V(-1.30) N(-1.59)
E(-1.59) S(-1.90) T(-1.90) A(-1.90) C(-2.26) G(-2.90) D(-2.90) P(-3.18)
Gap (3)
Pos 1 Q(4.677) E(3.290) K(3.158) R(1.144) D(0.600) S(0) T(0) N(0) H(-0.09) M(-0.24) P(-1) A(-1) Y(-1.19) G(-2) L(-
2.09) V(-2.19) W(-2.19) I(-3) F(-3) C(-3.09)
Gap (2)
Pos 2 V(3.854) I(3.219) L(1.219) M(1) A(-0.09) F(-0.78) C(-1) Y(-1) S(-2) T(-2) P(-2.09) E(-2.09) Q(-2.09) K(-2.09)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.09)
Gap (0)
Pos 3 N(4.071) D(4.064) A(3.453) S(2.290) E(0.439) T(0.121) G(-0.09) Q(-0.44) C(-0.44) K(-0.60) R(-0.85) P(-1.09)
M(-1.24) I(-1.41) L(-1.43) H(-1.44) Y(-2.09) V(-2.19) F(-2.19) W(-3.19)
Gap (2)
Pos 4 H(7.152) V(3.442) I(2.442) Y(1.216) M(0.477) L(0.454) N(0.176) D(0.176) A(-0.46) T(-0.68) E(-0.68) Q(-0.68)
R(-0.78) F(-1) S(-1.44) K(-1.44) C(-1.46) P(-2) G(-2.44) W(-2.44)
Gap (3)
Pos 5 D(4.056) A(3.161) K(3.064) V(2.063) I(1.112) E(0.482) S(0.385) R(0.214) T(-0.34) Q(-0.34) N(-0.36) M(-0.50)
L(-0.56) G(-0.67) C(-0.70) P(-1.26) H(-1.77) Y(-1.98) F(-2.08) W(-3.26)
Gap (2)
Pos 6 K(4.452) R(3.235) Q(0.663) E(0.528) N(-0.33) S(-0.47) T(-0.47) H(-1.04) A(-1.33) M(-1.33) P(-1.47) D(-1.47)
G(-2.33) L(-2.33) Y(-2.33) C(-3.33) I(-3.33) V(-3.33) F(-3.33) W(-3.33)
//

===============================
 SLIM 119
===============================
ID          Ferritin.clust.0.3.2
Center            1jts_EI_0
AvSimToCtr 0.555
AvRMSDToCtr 0.646 A
Size         281
NumDistinct 17
FracDDI           0.588235294117647
FracPeptides      0
FracIntra    0
Species           STREPTOCOCCUS SUIS (2), BACILLUS ANTHRACIS (2), TREPONEMA PALLIDUM (1), AGROBACTERIUM TUMEFACIENS
(1), MYCOBACTERIUM SMEGMATIS (1), THERMOSYNECHOCOCCUS ELONGATUS (1), BREVIBACILLUS BREVIS (1), BACILLUS SUBTILIS
(1), ESCHERICHIA COLI (1), LISTERIA INNOCUA (1), BORRELIA BURGDORFERI (1), HELICOBACTER PYLORI (1), SULFOLOBUS
SOLFATARICUS (1)
Conservation      0.133333333333333

Members
      1dps_AE_0   1dps_BG_0   1dps_JC_0   1dps_DF_0   1dps_CH_0   1dps_EI_0   1dps_GL_0   1dps_FK_0   1dps_HJ_0   1dps_IA_0
      1dps_LB_0   1dps_KD_0   1f33_BE_0   1f33_GI_0   1f33_EC_0   1f33_IK_0   1f33_JL_0   1f33_CB_0   1f33_KG_0   1f33_FD_0
      1jts_AE_0   1jts_TW_0   1jts_FL_0   1jts_DG_0   1jts_GJ_0   1jts_OR_0   1jts_PS_0   1jts_IA_0   1jts_QU_0   1jts_SV_0
      1jts_UM_0   1jts_CF_0   1jts_XO_0   1jts_NT_0   1jts_LC_0   1jts_KB_0   1jts_MQ_0   1jts_WN_0   1jts_JD_0   1jts_RX_0
      1jts_VP_0   1jts_HK_0   1jts_BH_0   1l8i_AE_0   1l8i_CF_0   1l8i_JD_0   1l8i_BH_0   1l8i_GJ_0   1l8i_LC_0   1l8i_IA_0
      1l8i_DG_0   1l8i_EI_0   1l8i_FL_0   1l8i_HK_0   1l8i_KB_0   1f30_BE_0   1f30_KG_0   1f30_EC_0   1f30_FD_0   1f30_CB_0
      1f30_JL_0   1f30_IK_0   1f30_GI_0   1jre_AE_0   1jre_BH_0   1jre_LC_0   1jre_DG_0   1jre_KB_0   1jre_IA_0   1jre_GJ_0
      1jre_CF_0   1jre_FL_0   1jre_HK_0   1jre_JD_0   1jre_EI_0   3ge4_AC_0   3ge4_KG_0   3ge4_FH_0   3ge4_IK_0   3ge4_JF_0
      3ge4_BD_0   3ge4_CE_0   3ge4_HJ_0   3ge4_DL_0   3ge4_EA_0   3ge4_GI_0   3ge4_LB_0   1o9r_AC_0   1o9r_BD_0   1o9r_CE_0
      1o9r_EA_0   2fjc_AH_0   2fjc_DG_0   2fjc_GI_0   2fjc_LC_0   2fjc_HK_0   2fjc_MO_0   2fjc_CE_0   2fjc_JB_0   2fjc_FJ_0
      2fjc_EL_0   2fjc_KA_0   2fjc_ID_0   2fjc_BF_0   1ji5_BC_0   1jig_BD_0   1n1q_CB_0   1qgh_AE_0   1qgh_DF_0   1qgh_CH_0
      1qgh_FK_0   1qgh_BG_0   1qgh_LB_0   1qgh_EI_0   1qgh_KD_0   1qgh_IA_0   1qgh_JC_0   1qgh_GL_0   1qgh_HJ_0   2bk6_AC_0
      2bk6_CE_0   2bk6_EA_0   2bk6_BD_0   2iy4_AE_0   2iy4_RX_0   2iy4_SY_0   2iy4_BG_0   2iy4_DF_0   2iy4_FK_0   2iy4_OT_0
      2iy4_VO_0   2iy4_CH_0   2iy4_NS_0   2iy4_PR_0   2iy4_XP_0   2iy4_QU_0   2iy4_KD_0   2iy4_LB_0   2iy4_UM_0   2iy4_YN_0
      2iy4_EI_0   2iy4_TV_0   2iy4_IA_0   2iy4_GL_0   2iy4_HJ_0   2iy4_MQ_0   2iy4_JC_0   2bkc_AE_0   2bkc_GL_0   2bkc_HJ_0
      2bkc_QU_0   2bkc_VO_0   2bkc_BG_0   2bkc_KD_0   2bkc_DF_0   2bkc_EI_0   2bkc_RX_0   2bkc_PR_0   2bkc_TV_0   2bkc_OT_0
      2bkc_XP_0   2bkc_FK_0   2bkc_MQ_0   2bkc_JC_0   2bkc_UM_0   2bkc_IA_0   2bkc_LB_0   2bkc_SY_0   2bkc_YN_0   2bkc_NS_0
      2bjy_AE_0   2bjy_IA_0   2bjy_BG_0   2bjy_CH_0   2bjy_LB_0   2bjy_DF_0   2bjy_HJ_0   2bjy_GL_0   2bjy_KD_0   2bjy_FK_0
      2bjy_JC_0   2bjy_EI_0   2bkc_CH_0   2chp_CA_0   2d5k_CA_0   1umn_AE_0   1umn_CH_0   1umn_JC_0   1umn_LB_0   2cf7_AE_0
      1umn_DF_0   1umn_HJ_0   1umn_IA_0   2cf7_BG_0   2cf7_GL_0   2cf7_JC_0   2cf7_EI_0   1umn_FK_0   2cf7_CH_0   2cf7_HJ_0
      1umn_BG_0   1umn_GL_0   1umn_KD_0   2cf7_LB_0   1umn_EI_0   2cf7_IA_0   2cf7_KD_0   2bw1_BG_0   2bw1_FK_0   2bw1_DF_0
      2bw1_HJ_0   2bw1_CH_0   2bw1_GL_0   2bw1_IA_0   2bw1_KD_0   2bw1_EI_0   2bw1_LB_0   2cf7_FK_0   2bw1_AE_0   2ux1_AE_0
      2ux1_EI_0   2ux1_GL_0   2ux1_BG_0   2ux1_DF_0   2ux1_CH_0   2ux1_JC_0   2ux1_KD_0   2ux1_HJ_0   2ux1_IA_0   2v15_FK_0
      2v15_HJ_0   2ux1_LB_0   2v15_CH_0   2v15_EI_0   2v15_JC_0   2v15_KD_0   2v15_LB_0   2v15_AE_0   2ux1_FK_0   2v15_DF_0
      2v15_IA_0   2v15_GL_0   2bw1_JC_0   2v15_BG_0   2cf7_DF_0   2c41_AI_0   2c41_BD_0   2c41_JL_0   2c41_CF_0   2c41_DK_0
      2c41_HC_0   2c41_GJ_0   2c41_LG_0   2c41_EA_0   2c41_KB_0   2c41_IE_0   2c41_FH_0   1ji4_AH_0   1ji4_JB_0   1ji4_ID_0
      1ji4_GI_0   1ji4_KA_0   1ji4_FJ_0   1ji4_LC_0   1ji4_BF_0   1ji4_CE_0   1ji4_EL_0   1uvh_BC_0   2yw6_AB_0   2yw6_BC_0
      2yw6_CA_0   1vel_AC_0   1vel_BA_0   1vel_FE_0   1vel_ED_0   1vel_CB_0   1vel_DF_0   2z90_AC_0   2clb_AC_0   2clb_MO_0
      2pyb_BC_0

Peptides
PartnerDomains
     Ferritin (1jts_EI_0,1o9r_AC_0,2fjc_AH_0,1qgh_AE_0,2d5k_CA_0,1umn_FK_0,2c41_AI_0,1ji4_AH_0,1uvh_BC_0,2clb_AC_0)

Dist Members Intf Alignment
      1jts_EI_0   R     I     G     D     T     S     R     D     K     W
      1o9r_AC_0   R     I     D     D     T     S     R     D     K     W
      2fjc_AH_0         Q                 T     L     R     G     K     W
      1ji5_BC_0                     D     L     Y     T     E     K     W
      1jig_BD_0                     D     L     H     T     E     Q     W
      1n1q_CB_0                     D     D     E     A     E     K     W
      1qgh_AE_0         I           D     I     K     A     D     K     W
      2chp_CA_0                     D     V     I     E     E     K     W
      2d5k_CA_0         I           D     I     Q     T     D     K     W
      1umn_AE_0                     D     N     K     A     E     K     W
      1umn_FK_0         F           D     N     K     A     E     K     W
      2c41_AI_0         A           D     T     V     Q     Q     K     W
      1ji4_AH_0         S                 D     L     A     Q     K     W
      1uvh_BC_0         I     E     D     I     A     G     E     K     W
      2z90_AC_0                           H     I     D     E     K     W
      2clb_AC_0         C                 Q     L     Q     I     E     A
      2pyb_BC_0                     N     D           S     E     K

Dist Members ResidueID Alignment
      1jts_EI_0   133   136   137   146   149   152   153   156   157   160
      1o9r_AC_0   122   125   126   138   141   144   145   148   149   152
      2fjc_AH_0         142               158   161   162   165   166   169
      1ji5_BC_0                     124   127   130   131   134   135   138
      1jig_BD_0                     126   129   132   133   136   137   140
      1n1q_CB_0                     128   131   134   135   138   139   142
      1qgh_AE_0         117         130   133   136   137   140   141   144
      2chp_CA_0                     132   135   138   139   142   143   146
      2d5k_CA_0         114         127   130   133   134   137   138   141
      1umn_AE_0                     146   149   152   153   156   157   160
      1umn_FK_0         133         146   149   152   153   156   157   160
      2c41_AI_0         117         130   133   136   137   140   141   144
      1ji4_AH_0         110               126   129   130   133   134   137
      1uvh_BC_0         124   125   136   139   142   143   146   147   150
      2z90_AC_0                           141   144   145   148   149   152
      2clb_AC_0         135               150   153   154   157   158   161
      2pyb_BC_0                     137   140         144   147   148

Alignment Occupancy     0.117 0.588 0.176 0.764 1     0.941 1     1     1        0.941
Gap in betw Columns     9,12 2      2     0     2     0     2

SLIM RegEx        [DN]..[TDINLHQV]..[KLSIAEYVHQ][ATRQSEDG]..[EDQIG][KQE]..[WA]
SLIM   Coverage           0.882352941176471
SLIM   PSSM Match Cutoff 25.6547144619324
SLIM   I=181997 Im=4568 Id=76 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 D(5.652) N(3.244) E(1.662) T(0.681) S(-0.14) Q(-0.26) G(-1.14) K(-1.14) H(-1.26) P(-1.31)   R(-1.86) A(-2.26)
M(-3.14) Y(-3.14) C(-3.26) I(-3.26) V(-3.26) F(-3.26) L(-4.14) W(-4.26)
Gap (2)
Pos 1 H(5.169) D(4.282) N(3.879) T(2.610) I(2.462) Q(2.235) L(2.071) V(1.811) E(0.776) M(0.522)   S(0.234) G(-0.16)
P(-0.25) Y(-0.44) K(-0.45) R(-0.74) F(-0.94) A(-1.13) C(-1.44) W(-2.80)
Gap (2)
Pos 2 H(5.170) Y(4.176) K(3.285) L(2.375) Q(2.292) E(2.289) I(2.195) V(1.966) S(1.939) A(1.340)   M(0.698) R(0.522)
F(0.443) D(-0.15) N(-0.19) T(-0.28) W(-0.68) C(-1.36) G(-1.44) P(-1.57)
Gap (0)
Pos 3 R(3.287) D(3.215) G(3.204) Q(2.933) A(2.802) E(2.357) T(2.347) S(1.578) K(0.768) N(-0.03)   P(-0.31) H(-0.47)
C(-0.91) M(-0.93) L(-1.68) I(-1.82) V(-1.82) Y(-1.87) F(-2.35) W(-2.76)
Gap (2)
Pos 4 D(4.594) E(4.396) G(3.174) Q(3.073) I(1.180) K(0.618) T(0.374) N(0.260) S(-0.05) R(-0.11)   H(-0.29) L(-0.72)
M(-1.01) A(-1.04) P(-1.09) V(-1.29) Y(-1.88) F(-2.24) W(-2.85) C(-2.95)
Gap (0)
Pos 5 K(4.877) E(2.447) Q(2.447) R(1.907) S(0) T(0) N(0) D(-0.20) H(-0.81) M(-0.93) P(-1) A(-1)   Y(-1.90) G(-2) L(-
2.03) V(-2.90) W(-2.90) I(-3) F(-3) C(-3.03)
Gap (2)
Pos 6 W(10.87) Y(1.876) A(1.180) F(0.878) M(-1.06) S(-1.59) C(-1.72) G(-1.72) Q(-1.95) L(-1.95)   H(-2.06) T(-2.72)
E(-2.72) R(-2.72) K(-2.72) I(-2.72) V(-2.95) P(-3.27) N(-3.27) D(-3.72)
//

===============================
 SLIM 120
===============================
ID           Ferritin.clust.0.3.8
Center             3hx5_sf_0
AvSimToCtr 0.686
AvRMSDToCtr 0.456 A
Size         159
NumDistinct 9
FracDDI            0.888888888888889
FracPeptides       0
FracIntra    0
Species            TRICHOPLUSIA NI (3), HOMO SAPIENS (2), EQUUS CABALLUS (1), RANA CATESBEIANA (1)
Conservation       0.428571428571429

Members
      1ies_AB_0 1ies_FD_0 1ies_BC_0 1ies_DE_0 3hx5_ot_0 3hx2_DL_0 3hx7_SF_0 3hx5_bj_0 3hx5_go_0 3hx2_JX_0
      3hx7_XB_0   3hx2_jx_0   3hx7_go_0   3hx5_jx_0   3hx2_MR_0   3hx5_GO_0   3hx7_xb_0   3hx2_OT_0   3hx5_kv_0   3hx7_CK_0
      3hx7_HP_0   3hx2_re_0   3hx2_wd_0   3hx2_UH_0   3hx7_em_0   3hx2_mr_0   3hx5_RE_0   3hx7_uh_0   3hx5_QA_0   3hx5_WD_0
      3hx2_GO_0   3hx2_kv_0   3hx5_PU_0   3hx5_TG_0   3hx5_iq_0   3hx7_GO_0   3hx7_re_0   3hx2_FN_0   3hx2_TG_0   3hx2_HP_0
      3hx2_RE_0   3hx2_em_0   3hx5_SF_0   3hx2_dl_0   3hx2_go_0   3hx7_JX_0   3hx2_vc_0   3hx5_FN_0   3hx5_vc_0   3hx2_SF_0
      3hx5_NS_0   3hx5_EM_0   3hx5_pu_0   3hx7_IQ_0   3hx2_NS_0   3hx7_tg_0   3hx5_dl_0   3hx2_sf_0   3hx5_KV_0   3hx7_wd_0
      3hx5_wd_0   3hx2_PU_0   3hx2_qa_0   3hx2_ai_0   3hx2_ck_0   3hx5_re_0   3hx2_bj_0   3hx2_iq_0   3hx2_ns_0   3hx2_EM_0
      3hx2_QA_0   3hx5_MR_0   3hx7_QA_0   3hx2_pu_0   3hx7_PU_0   3hx7_VC_0   3hx2_VC_0   3hx7_FN_0   3hx2_XB_0   3hx5_UH_0
      3hx7_RE_0   3hx5_XB_0   3hx5_qa_0   3hx7_DL_0   3hx5_CK_0   3hx7_ai_0   1mfr_AH_0   1mfr_RS_0   1mfr_BV_0   1mfr_CR_0
      1mfr_SC_0   1mfr_FG_0   1mfr_MT_0   1mfr_GO_0   1mfr_QN_0   1mfr_TL_0   1mfr_WD_0   1mfr_PU_0   1mfr_LM_0   1mfr_OF_0
      1mfr_HX_0   1mfr_KP_0   1mfr_IW_0   1mfr_UK_0   1mfr_XA_0   1mfr_EB_0   1mfr_JQ_0   1mfr_NJ_0   1mfr_VE_0   1mfr_DI_0
      2z6m_AE_0   2z6m_GK_0   2z6m_DB_0   2z6m_JH_0   2z6m_FD_0   2z6m_LJ_0   2z6m_BF_0   2z6m_HL_0   2z6m_EC_0   2z6m_KI_0
      2z6m_CA_0   2z6m_IG_0   3hx7_qa_0   1z6o_AE_0   1z6o_BK_0   1z6o_GJ_0   1z6o_CH_0   1z6o_JF_0   1z6o_KD_0   1z6o_DB_0
      1z6o_FG_0   1z6o_EL_0   1z6o_LA_0   1z6o_HI_0   1z6o_IC_0   3e6r_AB_0   3e6r_BF_0   3e6r_CD_0   3e6r_DE_0   3e6r_EC_0
      3e6r_FA_0   3e6s_AB_0   3e6s_FA_0   3e6s_DE_0   3e6s_BF_0   3e6s_EC_0   3e6s_CD_0   1z6o_MO_0   1z6o_PR_0   1z6o_XV_0
      1z6o_TX_0   1z6o_WU_0   1z6o_QP_0   1z6o_SW_0   1z6o_VT_0   1z6o_RQ_0   1z6o_US_0   1z6o_NM_0   1z6o_ON_0

Peptides

PartnerDomains
      Ferritin (3hx5_sf_0,1ies_AB_0,1mfr_AH_0,1mfr_BV_0,2z6m_AE_0,1z6o_AE_0,3e6r_AB_0,1z6o_TX_0)

Dist Members Intf   Alignment
      3hx5_sf_0     L     H       E       T     L       D     V       K       K
      1ies_AB_0     L     H       E       S     L       D     V       K       K
      1mfr_AH_0     L     H       E             L       E     V       K       K
      1mfr_BV_0     L     H       E       S     L       E     V       K       K
      2z6m_AE_0     L     H       E       T     L       N     V       C       K
      1z6o_AE_0     F     H       E       E     I       E     A       E       R
      3e6r_AB_0     L     A       N             H       L     V       N       D
      1z6o_MO_0     R     I                     L       E     Y       K       R
      1z6o_TX_0     R     I       T             L       E     Y       K       R

Dist Members ResidueID Alignment
      3hx5_sf_0   112   115   131         132   135     136   139     140     143
      1ies_AB_0   111   114   130         131   134     135   138     139     142
      1mfr_AH_0   111   114   130               134     135   138     139     142
      1mfr_BV_0   111   114   130         131   134     135   138     139     142
      2z6m_AE_0   115   118   134         135   138     139   142     143     146
      1z6o_AE_0   141   144   164         165   168     169   172     173     176
      3e6r_AB_0   102   105   121               124     125   128     129     132
      1z6o_MO_0   124   127                     150     151   154     155     158
      1z6o_TX_0   124   127   146               150     151   154     155     158

Alignment Occupancy       1       1     0.888 0.555 1         1       1       1     1
Gap in betw Columns       2       15,19 0     2     0         2       0       2
SLIM   RegEx        [ETN][STE]..[LHI][EDNL]..[VYA][KNCE]..[KRD]
SLIM   Coverage           0.777777777777778
SLIM   PSSM Match Cutoff 22.2696283825462
SLIM   I=181997 Im=8230 Id=76 Idm=2
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(4.596) N(3.819) T(1.923) D(1.710) Q(1.638) K(0.710) S(0.239) H(-0.20)   R(-0.20) P(-0.57) G(-0.68) A(-1.20)
M(-1.92) Y(-2.11) C(-2.83) I(-2.92) L(-2.92) V(-2.92) F(-2.92) W(-3.20)
Gap (0)
Pos 1 E(2.829) S(2.553) T(2.553) D(0.499) Q(0.235) N(-0.06) G(-0.17) K(-0.29)   P(-0.31) A(-0.31) H(-0.87) R(-1.29)
M(-1.72) C(-1.79) Y(-2.58) I(-2.72) L(-2.72) V(-2.72) F(-2.72) W(-3.58)
Gap (2)
Pos 2 H(5.802) L(3.767) V(2.768) I(2.469) M(1.802) Y(0.138) F(-0.07) N(-1.06)   A(-1.07) C(-1.10) D(-1.13) T(-1.46)
Q(-1.50) R(-1.50) S(-1.82) E(-1.86) K(-1.88) W(-2.07) P(-2.82) G(-3.46)
Gap (0)
Pos 3 D(4.543) E(4.433) N(3.828) L(1.808) Q(1.493) V(0.822) K(0.541) T(0.251)   S(0.090) M(-0.08) I(-0.14) R(-0.33)
H(-0.38) P(-1.18) A(-1.23) G(-1.30) F(-1.86) Y(-1.95) C(-2.69) W(-3.01)
Gap (2)
Pos 4 Y(5.496) V(3.597) I(2.603) A(1.911) F(1.552) M(0.660) L(0.660) H(0.524)   W(0.519) S(-0.86) C(-0.95) Q(-1.54)
T(-1.82) E(-1.82) K(-1.82) G(-1.86) P(-1.95) N(-2.26) R(-2.26) D(-2.82)
Gap (0)
Pos 5 C(6.802) K(4.598) N(3.820) E(2.913) R(1.639) Q(1.011) D(0.317) S(0.113)   T(-0.07) A(-0.88) H(-0.90) M(-1.15)
P(-1.18) G(-1.50) L(-1.95) Y(-2) I(-2.46) V(-2.46) F(-2.82) W(-2.88)
Gap (2)
Pos 6 K(4.442) R(3.981) D(3.808) E(0.980) Q(0.927) N(0.174) T(-0.01) S(-0.23)   H(-0.54) A(-1.07) M(-1.10) P(-1.23)
G(-1.82) Y(-2.07) L(-2.10) C(-3) I(-3) V(-3) F(-3) W(-3.07)
//

===============================
 SLIM 121
===============================
ID           Ferritin.clust.0.3.9
Center             3e1q_IK_0
AvSimToCtr 0.677
AvRMSDToCtr 0.474 A
Size         153
NumDistinct 7
FracDDI            0.428571428571429
FracPeptides       0
FracIntra    0
Species            AZOTOBACTER VINELANDII (2), HALOBACTERIUM SALINARIUM (1), RHODOBACTER CAPSULATUS (1), ESCHERICHIA
COLI (1), DESULFOVIBRIO DESULFURICANS (1)
Conservation       0.333333333333333
Members
      1bcf_AH_0   1bcf_ED_0   1bcf_FJ_0   1bcf_GF_0   1bcf_LC_0   1bcf_BL_0   1bcf_CB_0   1bcf_JG_0   1bfr_AH_0   1bfr_ED_0
      1bfr_MT_0   1bfr_SR_0   1bfr_GF_0   1bfr_QP_0   1bfr_CB_0   1bfr_HW_0   1bfr_ON_0   1bfr_BL_0   1bfr_NX_0   1bfr_DU_0
      1bfr_FJ_0   1bfr_RV_0   1bfr_PI_0   1bfr_IQ_0   1bfr_TK_0   1bfr_JG_0   1bfr_VS_0   1bfr_UE_0   1bfr_KM_0   1bfr_LC_0
      1bfr_XO_0   1bfr_WA_0   2vxi_BD_0   2vxi_CK_0   2vxi_HL_0   2vxi_DF_0   2vxi_LJ_0   2vxi_FB_0   2vxi_JH_0   2vxi_IA_0
      3e1j_AJ_0   3e1j_CH_0   3e1j_KF_0   3e1j_BC_0   3e1j_LG_0   3e1j_IK_0   3e1j_HB_0   3e1j_FI_0   3e1o_AJ_0   3e1o_CH_0
      3e1o_FI_0   3e1o_BC_0   3e1o_LG_0   3e1o_HB_0   3e1o_IK_0   3e1o_KF_0   3e1l_AJ_0   3e1l_KF_0   3e1l_CH_0   3e1l_FI_0
      3e1l_BC_0   3e1l_LG_0   3e1l_IK_0   3e1l_HB_0   3e1m_AJ_0   3e1m_FI_0   3e1m_HB_0   3e1m_BC_0   3e1m_IK_0   3e1m_LG_0
      3e1m_CH_0   3e1m_KF_0   3e1n_AJ_0   3e1n_CH_0   3e1n_FI_0   3e1n_BC_0   3e1n_IK_0   3e1n_LG_0   3e1n_HB_0   3e1n_KF_0
      3e1q_AJ_0   3e1q_KF_0   3e1q_BC_0   3e1q_CH_0   3e1q_HB_0   3e1q_LG_0   3e1q_FI_0   3e1p_AJ_0   3e1p_KF_0   3e1p_BC_0
      3e1p_IK_0   3e1p_CH_0   3e1p_FI_0   3e1p_HB_0   3e1p_LG_0   2htn_DH_0   2htn_GA_0   2htn_HF_0   2htn_FD_0   1sof_BF_0
      1sof_EG_0   1sof_FC_0   1sof_CB_0   2fkz_BF_0   2fkz_EG_0   2fkz_FC_0   2fl0_BF_0   2fl0_EG_0   2fl0_FC_0   2fkz_CB_0
      2fl0_CB_0   1jgc_AB_0   1jgc_BC_0   1jgc_CA_0   3bkn_AK_0   3bkn_BG_0   3bkn_IL_0   3bkn_CF_0   3bkn_DA_0   3bkn_JC_0
      3bkn_HI_0   3bkn_FJ_0   3bkn_LH_0   3bkn_KD_0   1nf4_BN_0   1nf4_DE_0   1nf4_HI_0   1nf4_FP_0   1nf6_BN_0   1nfv_BN_0
      1nfv_DE_0   1nfv_FP_0   1nf4_KF_0   1nfv_HI_0   1nfv_KF_0   1nf4_PK_0   1nf6_NG_0   1nf6_PK_0   1nfv_PK_0   1nf4_NG_0
      1nfv_NG_0   1nf6_FP_0   1nf6_HI_0   1nf6_KF_0   1nf4_GB_0   1nfv_GB_0   1nf6_GB_0   1nf6_DE_0   1moj_CA_0   1tjo_CA_0
      1tkp_CA_0   1tk6_CA_0   1tko_CA_0

Peptides

PartnerDomains
      Ferritin (3e1q_IK_0,1sof_BF_0,1sof_EG_0)
      DUF593 (1sof_BF_0,1sof_EG_0)

Dist Members Intf   Alignment
      3e1q_IK_0     R     I       G       R     I       L     R       E       I     D       E
      1sof_BF_0     K     I               R     E       L     E       E       I     D       E
      1sof_EG_0     K     I       A       R     E       L     E       E       I     D       E
      1jgc_AB_0     R     R                     E       I     T       E       V     D       E
      3bkn_AK_0     K     I       V             E       L     A       E             D
      1nf4_BN_0     S     L                     E       I     E       Q             T
      1moj_CA_0     R     T       E             R       L     I       E             H       E

Dist Members ResidueID Alignment
      3e1q_IK_0   102   105   106         117   121     124   125     128     131   132     135
      1sof_BF_0   102   105               117   121     124   125     128     131   132     135
      1sof_EG_0   102   105   106         117   121     124   125     128     131   132     135
      1jgc_AB_0   102   105                     121     124   125     128     131   132     135
      3bkn_AK_0   102   105   106               121     124   125     128           132
      1nf4_BN_0   107   110                     126     129   130     133           137
      1moj_CA_0   134   137   138               153     156   157     160           164     167

Alignment Occupancy       1       1       0.571 0.428 1       1       1       1     0.571 1       0.714
Gap in betw Columns       2       0       14    2     0       2       2       0     2
SLIM   RegEx        [ERI]..[LI][EATIR]..[EQ]..[IV][DHT]..E
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 20.2174658821249
SLIM   I=181997 Im=9427 Id=76 Idm=1
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(4.664) R(3.087) I(2.059) Q(1.735) D(1.668) K(1.100) L(0.104) N(-0.14) H(-0.14) S(-0.24) T(-0.24) M(-0.62)
V(-0.84) A(-1) P(-1.24) F(-1.68) Y(-1.78) G(-2.13) C(-2.62) W(-3)
Gap (2)
Pos 1 L(3.716) I(3.038) V(2.716) M(1.800) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2.19) R(-2.19) K(-2.19) W(-2.19)
P(-3) N(-3) E(-3) H(-3) D(-3.60) G(-4)
Gap (0)
Pos 2 E(4.158) R(3.079) T(2.122) A(2.093) I(2.066) Q(1.323) D(1.281) K(0.885) S(0.244) L(0.155) N(-0.25) H(-0.30)
P(-0.47) G(-0.49) M(-0.50) V(-0.78) C(-1.33) F(-1.56) Y(-1.78) W(-3)
Gap (2)
Pos 3 E(4.854) Q(3.315) D(1.868) K(1) R(0.219) S(0) T(0) N(0) H(0) P(-1) A(-1) M(-1.35) Y(-1.78) G(-2) L(-2.78) V(-
2.78) W(-2.78) I(-3) F(-3) C(-3.78)
Gap (2)
Pos 4 I(3.268) V(2.193) L(1.268) M(0.440) F(-0.73) A(-1.20) C(-1.55) Y(-1.55) S(-2.55) T(-2.55) P(-3.20) E(-3.20)
Q(-3.20) K(-3.20) N(-3.55) D(-3.55) H(-3.55) R(-3.55) W(-3.55) G(-4.20)
Gap (0)
Pos 5 H(6.055) D(5.666) T(2.290) E(1.716) N(0.905) S(0.144) Y(0.104) Q(0) P(-0.39) G(-0.39) K(-0.78) R(-1.23) A(-
1.78) M(-2.23) F(-2.23) C(-2.35) V(-2.60) I(-2.78) L(-3.23) W(-3.23)
Gap (2)
Pos 6 E(4.663) D(1.663) Q(1.663) K(0.663) S(-0.33) T(-0.33) N(-0.33) H(-0.33) R(-0.33) P(-1.33) A(-1.33) G(-2.33)
M(-2.33) Y(-2.33) I(-3.33) L(-3.33) V(-3.33) F(-3.33) W(-3.33) C(-4.33)
//

===============================
 SLIM 122
===============================
ID           Fib_beta.clust.0.15.3
Center             1jy3_RQ_0
AvSimToCtr 0.382
AvRMSDToCtr 0.967 A
Size         7
NumDistinct 4
FracDDI            0
FracPeptides       0
FracIntra    0
Species            BOS TAURUS (4)
Conservation       1
Members
      1jy2_ON_0 1jy2_RQ_0 1jy3_ON_0 1jy2_OP_0 1jy3_RS_0 1jy2_RS_0 1jy3_OP_0

Peptides

PartnerDomains

Dist Members Intf Alignment
      1jy3_RQ_0   S     G        C      R      M      K     G    L      I      D      E      D      F     T    I      L    R
      L     F
      1jy2_OP_0                                       T                                             Y          V      D    L
      L
      1jy3_RS_0                                T      T                 I                    L      Y          V      D    L
      L
      1jy3_OP_0                                       T                 I                           Y          V      D    L
      L     I

Dist Members ResidueID Alignment
      1jy3_RQ_0   50    51    52        53     54     55    56   57     58     59     60     62     65    66   69     72
      73    76    77
      1jy2_OP_0                                       22                                            32         36     39
      40    43
      1jy3_RS_0                                21     22                25                   29     32         36     39
      40    43
      1jy3_OP_0                                       22                25                          32         36     39
      40    43    46

Alignment Occupancy       0.25   0.25   0.25   0.25   0.5   1    0.25   0.25   0.75   0.25   0.25   0.5   1    0.25   1    1
      1     1     0.5
Gap in betw Columns       0      2      3      2      3     2    0      2      0,2

SLIM   RegEx        [TM][TK]..I.{3}[DL]..[YF].{3}[VI]..[DL][LR]..L.{0,2}[FI]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 22.7366935508185
SLIM   I=181997 Im=4798 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 M(3.616) T(2.620) L(0.631) S(-0.25) P(-0.33) I(-0.33) G(-0.36) D(-0.36) Q(-0.69) K(-1.07) N(-1.25) E(-1.25)
H(-1.25) F(-1.25) C(-1.69) A(-1.69) R(-1.69) Y(-2.07) W(-2.25) V(-2.69)
Gap (0)
Pos 1 T(3.718) K(3.633) S(0.827) P(0.756) D(0.756) R(0.752) G(0.728) E(0.357) Q(0.357) N(0) H(-0.17) A(-1) M(-1)
C(-1.24) L(-2) Y(-2) I(-2.17) V(-2.17) F(-2.17) W(-3)
Gap (2)
Pos 2 I(3.712) L(1.712) M(0.712) V(0.712) F(-0.28) C(-1.28) A(-1.28) Y(-1.28) S(-2.28) T(-2.28) P(-3.28) N(-3.28)
D(-3.28) E(-3.28) Q(-3.28) H(-3.28) R(-3.28) K(-3.28) W(-3.28) G(-4.28)
Gap (3)
Pos 3 D(4.613) L(2.614) V(1.616) E(0.620) M(0.620) I(0.620) T(-0.33) N(-0.36) S(-1.25) Q(-1.25) F(-1.33) A(-2.07)
K(-2.07) C(-2.25) P(-2.25) H(-2.25) Y(-2.25) G(-2.33) R(-2.69) W(-3.25)
Gap (2)
Pos 4 Y(6.718) F(4.752) W(1.827) H(1.728) M(-0.64) I(-0.64) L(-0.64) V(-1) Q(-1.24) C(-2) S(-2) T(-2) A(-2) N(-2.17)
E(-2.17) R(-2.17) K(-2.17) G(-3) D(-3) P(-3.17)
Gap (3)
Pos 5 V(3.728) I(3.357) L(1.357) M(1) A(-0.17) F(-0.64) C(-1) Y(-1) S(-2) T(-2) P(-2.17) E(-2.17) Q(-2.17) K(-2.17)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.17)
Gap (2)
Pos 6 D(5.712) L(2.614) E(1.714) V(1.621) T(0.728) N(0.718) M(0.633) I(0.633) S(-0.24) Q(-0.24) K(-1.17) P(-1.24)
H(-1.24) F(-1.24) G(-1.27) A(-1.64) R(-2) C(-2.04) Y(-2.04) W(-3.04)
Gap (0)
Pos 7 L(3.713) R(3.616) V(2.713) M(1.728) I(1.714) K(0.667) Q(-0.24) F(-0.27) A(-1) Y(-1.17) C(-1.24) N(-1.24) E(-
1.24) H(-1.24) S(-1.64) T(-1.64) W(-2.17) P(-2.64) G(-3.04) D(-3.04)
Gap (2)
Pos 8 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0,2)
Pos 9 F(4.616) I(2.631) Y(1.631) L(0.740) M(-0.07) V(-0.25) W(-0.36) C(-2.07) A(-2.07) H(-2.25) S(-2.69) T(-2.69)
N(-3.69) D(-3.69) E(-3.69) Q(-3.69) R(-3.69) K(-3.69) P(-4.07) G(-4.07)
//

===============================
 SLIM 123
===============================
ID           Fibrinogen_C.clust.0.15.0
Center             2j3f_FE_0
AvSimToCtr 0.626
AvRMSDToCtr 0.472 A
Size         65
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (4)
Conservation       1

Members
      2d39_AC_0   2d39_CB_0   2d39_BA_0   2j0g_AC_0   2j0g_DF_0   2j0h_AC_0   2j0h_DF_0   2j0y_AC_0   2j0y_DF_0   2j2p_AC_0
      2j2p_DF_0   2j1g_AC_0   2j3o_CB_0   2j3f_AC_0   2j3f_DF_0   2j3u_AC_0   2j3u_DF_0   2j3o_AC_0   2j3o_DF_0   2j3o_FE_0
      2j0g_CB_0   2j0g_FE_0   2j0h_CB_0   2j0h_FE_0   2j0y_CB_0   2j0y_FE_0   2j3f_CB_0   2j3u_CB_0   2j3u_FE_0   2j2p_CB_0
      2j2p_FE_0   2j3g_CB_0   2j1g_FE_0   2j3g_FE_0   2j1g_CB_0   2j3o_BA_0   2j0g_BA_0   2j0g_ED_0   2j0h_BA_0   2j0h_ED_0
        2j0y_BA_0 2j0y_ED_0 2j2p_BA_0 2j2p_ED_0 2j3f_BA_0 2j3f_ED_0 2j3u_BA_0 2j3u_ED_0 2j1g_BA_0 2j1g_ED_0
        2j3g_BA_0 2j3g_ED_0 2j3o_ED_0 2j1g_DF_0 2j3g_DF_0 2j3g_AC_0 2j5z_AB_0 2j60_AB_0 2j64_AB_0 2j5z_BC_0
        2j60_BC_0 2j64_BC_0 2j5z_CA_0 2j60_CA_0 2j64_CA_0

Peptides

PartnerDomains
      Fibrinogen_C (2j3f_FE_0,2d39_AC_0,2j5z_AB_0,2j5z_BC_0)

Dist Members Intf   Alignment
      2j3f_FE_0     W     T     S      V       R      Q     G     F     G     S     R     L     F     W     L     R
      2d39_AC_0     W     T     S      V       R      Q     G     F     G     S     Q     L     F     W     L
      2j5z_AB_0     W                  V       R      A     G     F     G     N     Q     E     F     W     L
      2j5z_BC_0     W     P                    R      A     G     F     G     N     Q     E     F     W     L

Dist Members ResidueID Alignment
      2j3f_FE_0   93    105   127      128     132    139   140   141   142   143   144   145   148   149   150   256
      2d39_AC_0   131   143   165      166     170    177   178   179   180   181   182   183   186   187   188
      2j5z_AB_0   83                   118     122    129   130   131   132   133   134   135   138   139   140
      2j5z_BC_0   83    95                     122    129   130   131   132   133   134   135   138   139   140

Alignment Occupancy       1     0.75   0.5     0.75   1     1     1     1     1     1     1     1     1     1     1
      0.25
Gap in betw Columns       11    21     0       3      6     0     0     0     0     0     0     2     0     0

SLIM   RegEx        [AQ]GFG[SN][QR][EL]..FWL
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 22.8047615640797
SLIM   I=181997 Im=3006 Id=19 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(4.309) A(3.313) E(1.355) S(0.620) R(0.433) K(0.433) T(-0.37) N(-0.37) M(-0.37) G(-0.56) D(-0.56) H(-0.56)
C(-0.64) P(-1) L(-1.37) Y(-1.37) I(-1.56) V(-2) F(-2.37) W(-2.37)
Gap (0)
Pos 1 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 2 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 3 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 4 N(5.313) S(3.355) T(0.620) D(0.620) A(0.355) G(0) E(0) Q(0) K(0) R(-0.37) H(-1) P(-1.37) M(-1.37) C(-1.56)
Y(-2) I(-2.37) L(-2.37) V(-2.37) F(-2.37) W(-3.37)
Gap (0)
Pos 5 Q(4.718) R(3.667) E(1.756) K(1.357) N(0) H(0) S(-0.17) T(-0.17) M(-0.17) D(-0.24) A(-1) P(-1.17) Y(-1.17) G(-
2) L(-2) V(-2.17) W(-2.17) C(-3) I(-3) F(-3)
Gap (0)
Pos 6 E(4.307) L(3.307) V(2.309) Q(1.325) M(1.325) I(1.313) D(1.309) K(0.355) S(-0.56) T(-0.56) R(-0.56) N(-0.64)
H(-0.64) F(-0.64) A(-1) Y(-1.37) P(-1.56) C(-1.64) W(-2.37) G(-2.56)
Gap (2)
Pos 7 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 8 W(11) Y(2) F(1) M(-1) C(-2) G(-2) Q(-2) H(-2) L(-2) S(-3) T(-3) A(-3) E(-3) R(-3) K(-3) I(-3) V(-3) P(-4) N(-
4) D(-4)
Gap (0)
Pos 9 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
//

===============================
 SLIM 124
===============================
ID           Fibrinogen_C.clust.0.15.1
Center             2j0y_EF_0
AvSimToCtr 0.626
AvRMSDToCtr 0.469 A
Size         65
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (4)
Conservation       1

Members
      2d39_AB_0   2d39_BC_0   2d39_CA_0   2j0g_AB_0   2j0g_DE_0   2j0h_AB_0   2j0h_DE_0   2j0y_AB_0   2j0y_DE_0   2j2p_AB_0
      2j2p_DE_0   2j3f_AB_0   2j3f_DE_0   2j3u_AB_0   2j3u_DE_0   2j1g_FD_0   2j3g_FD_0   2j3g_CA_0   2j0g_BC_0   2j0g_EF_0
      2j0h_BC_0   2j0h_EF_0   2j0y_BC_0   2j3f_BC_0   2j3f_EF_0   2j3u_BC_0   2j3u_EF_0   2j2p_BC_0   2j2p_EF_0   2j3o_EF_0
      2j1g_BC_0   2j3o_AB_0   2j3g_BC_0   2j1g_EF_0   2j3g_EF_0   2j3o_CA_0   2j3o_FD_0   2j0g_CA_0   2j0g_FD_0   2j0h_CA_0
      2j0h_FD_0   2j0y_CA_0   2j0y_FD_0   2j2p_CA_0   2j2p_FD_0   2j3f_CA_0   2j3f_FD_0   2j3u_CA_0   2j3u_FD_0   2j1g_CA_0
      2j3o_BC_0   2j1g_AB_0   2j1g_DE_0   2j3g_DE_0   2j3g_AB_0   2j3o_DE_0   2j5z_AC_0   2j60_AC_0   2j64_AC_0   2j5z_CB_0
      2j60_CB_0   2j64_CB_0   2j5z_BA_0   2j60_BA_0   2j64_BA_0

Peptides
PartnerDomains
      Fibrinogen_C (2j0y_EF_0,2d39_AB_0,2j5z_AC_0,2j5z_CB_0)

Dist Members Intf   Alignment
      2j0y_EF_0     H     F      L   S      G     W     H      L     D     R     R     D     Y
      2d39_AB_0     Y     F      L   S      G     W     H      L     D     R     Q
      2j5z_AC_0           T      L   S      G     W     Y      F     D
      2j5z_CB_0     A     T      L   S      G     W     Y      F     D

Dist Members ResidueID Alignment
      2j0y_EF_0   88    89    90     91     92    93    94     107   111   122   144   175   177
      2d39_AB_0   126   127   128    129    130   131   132    145   149   160   182
      2j5z_AC_0         79    80     81     82    83    84     97    101
      2j5z_CB_0   78    79    80     81     82    83    84     97    101

Alignment Occupancy       0.75   1   1      1     1     1      1     1     1     0.5   0.5   0.25   0.25
Gap in betw Columns       0      0   0      0     0     0      12    3     10    21

SLIM   RegEx        [AHY][FT]LSGW[HY]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 22.3635756090774
SLIM   I=181997 Im=4953 Id=19 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 H(6.616) Y(5.620) A(2.618) F(1.638) W(0.638) S(-0.21) N(-0.21) D(-0.32) Q(-0.83) T(-0.97) E(-0.97) R(-0.97)
G(-1.21) C(-1.21) K(-1.52) M(-1.52) I(-1.62) L(-1.62) V(-1.83) P(-1.97)
Gap (0)
Pos 1 F(5.307) T(3.309) Y(2.313) S(0.355) G(0.325) D(0.325) W(0.325) P(0.313) H(-0.37) M(-0.37) I(-0.56) L(-0.56)
N(-0.64) E(-0.64) Q(-0.64) K(-0.64) C(-1.37) A(-1.37) V(-1.37) R(-1.56)
Gap (0)
Pos 2 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 3 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 4 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 5 W(11) Y(2) F(1) M(-1) C(-2) G(-2) Q(-2) H(-2) L(-2) S(-3) T(-3) A(-3) E(-3) R(-3) K(-3) I(-3) V(-3) P(-4) N(-
4) D(-4)
Gap (0)
Pos 6 H(7.309) Y(6.313) F(2.325) W(1.325) N(0.355) D(0.325) Q(-0.37) T(-0.56) E(-0.56) R(-0.56) S(-1.37) K(-1.37)
M(-1.37) V(-1.37) I(-1.56) L(-1.56) A(-2) C(-2.37) P(-2.37) G(-2.37)
//
===============================
 SLIM 125
===============================
ID           Fibrinogen_C.clust.0.15.8
Center             2z4e_CF_0
AvSimToCtr 0.406
AvRMSDToCtr 1.422 A
Size         12
NumDistinct 4
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (4)
Conservation       1

Members
      1fzb_CF_0 1fze_CF_0 1fzc_CF_0 1fzf_CF_0 2q9i_CF_0 1fzg_CF_0 2hlo_CF_0 2h43_FC_0 2hod_CF_0 2hod_IL_0
      2hpc_CF_0 2hpc_IL_0

Peptides

PartnerDomains
      Fibrinogen_C (2z4e_CF_0,2hod_IL_0)

Dist Members Intf   Alignment
      2z4e_CF_0     T     Y      A      Y     D     P     S     F     F      N     G
      1fze_CF_0                         A           P     S     F     F      N     G
      2hod_IL_0     T     Y      A      Y     P                 F            N     G
      2hpc_CF_0     T     Y             A                                    N     G

Dist Members ResidueID Alignment
      2z4e_CF_0   277   278   279       280   298   299   300   303   304    308   309
      1fze_CF_0                         279         299   300   303   304    308   309
      2hod_IL_0   277   278   279       280   299               303          308   309
      2hpc_CF_0   277   278             279                                  308   309

Alignment Occupancy       0.75   0.75   0.5   1     0.5   0.5   0.5   0.75   0.5   1     1
Gap in betw Columns       0      0      0     17,18 0     0     2     0      3     0

SLIM   RegEx        [DP]PS..FF.{3}NG
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 17.2474934912023
SLIM   I=181997 Im=8280 Id=19 Idm=1
SLIM   PSSM p-value 0.373896075994698
PSSM Listing
Pos 0 P(5.614) D(4.614) E(0.662) T(0.306) N(-0.25) S(-1.07) Q(-1.07) K(-1.69) A(-2.07) G(-2.07) H(-2.07) R(-2.69)
M(-3.07) V(-3.07) C(-3.69) I(-3.69) Y(-3.69) L(-4.07) F(-4.07) W(-4.69)
Gap (0)
Pos 1 P(6.306) T(0.306) S(-1.69) A(-1.69) N(-1.69) D(-1.69) E(-1.69) Q(-1.69) K(-1.69) G(-2.69) H(-2.69) R(-2.69)
M(-2.69) V(-2.69) C(-3.69) I(-3.69) L(-3.69) Y(-3.69) F(-4.69) W(-4.69)
Gap (0)
Pos 2 S(3.306) T(0.306) A(0.306) N(0.306) G(-0.69) D(-0.69) E(-0.69) Q(-0.69) K(-0.69) C(-1.69) P(-1.69) H(-1.69)
R(-1.69) M(-1.69) I(-2.69) L(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
Gap (2)
Pos 3 F(5.712) Y(2.712) W(0.712) M(-0.28) I(-0.28) L(-0.28) H(-1.28) V(-1.28) C(-2.28) S(-2.28) T(-2.28) A(-2.28)
G(-3.28) N(-3.28) D(-3.28) E(-3.28) Q(-3.28) R(-3.28) K(-3.28) P(-4.28)
Gap (0)
Pos 4 F(5.306) Y(2.306) W(0.306) M(-0.69) I(-0.69) L(-0.69) H(-1.69) V(-1.69) C(-2.69) S(-2.69) T(-2.69) A(-2.69)
G(-3.69) N(-3.69) D(-3.69) E(-3.69) Q(-3.69) R(-3.69) K(-3.69) P(-4.69)
Gap (3)
Pos 5 N(6) S(1) D(1) T(0) G(0) E(0) Q(0) R(0) K(0) H(-1) P(-2) A(-2) M(-2) Y(-2) C(-3) I(-3) L(-3) V(-3) F(-3) W(-4)
Gap (0)
Pos 6 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
//

===============================
 SLIM 126
===============================
ID           Fibrinogen_C.clust.0.2.5
Center             3ghg_HS_1
AvSimToCtr 0.468
AvRMSDToCtr 0.782 A
Size         42
NumDistinct 5
FracDDI            0
FracPeptides       1
FracIntra    0
Species            NONE
Conservation       UNDEFINED

Members
      1fzc_BI_0   1rf1_BH_1   1rf1_EJ_1   2oyh_EJ_1   2z4e_BI_1   2z4e_EJ_1   1m1j_BI_1   1fzf_BM_1   1fzg_BM_1   2h43_BI_0
      2h43_EJ_0   2q9i_EN_1   1fzg_CS_0   1re3_CG_0   3e1i_CG_0   2z4e_CS_0   2q9i_CS_0   2oyh_CG_0   2oyh_FI_0   1n73_CG_0
      1rf1_FI_0   2q9i_BM_1   1ltj_BH_0   1ltj_EJ_0   2oyh_BH_0   2ffd_EH_1   2oyi_EJ_0   3bvh_BJ_0   1m1j_EJ_1   2oyi_BH_0
      2ffd_BJ_1   3ghg_BO_1   3ghg_EP_1   3ghg_KT_1   1fzc_CG_0   1fzg_FT_0   1re3_FH_0   2q9i_FT_0   2z4e_FT_0   1rf1_CG_0
      2hpc_IS_0   1fzc_EJ_0
Peptides
      3ghg-S 2h43-J 2q9i-N 2ffd-H 2oyi-J

PartnerDomains

Dist Members Intf   Alignment
      3ghg_HS_1     G     H     R    P
      2h43_EJ_0     A     H     R    P
      2q9i_EN_1     M     H     R    P
      2ffd_EH_1     G     P     R    V
      2oyi_EJ_0     G     P     R    P

Dist Members ResidueID Alignment
      3ghg_HS_1   1     2     3      4
      2h43_EJ_0   1     2     3      4
      2q9i_EN_1   1     2     3      4
      2ffd_EH_1   1     2     3      4
      2oyi_EJ_0   1     2     3      4

Alignment Occupancy       1     1    1      1
Gap in betw Columns       0     0    0

SLIM   RegEx        [GAM][HP]R[PV]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 18.7605849703968
SLIM   I=181997 Im=6115 Id=19 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 G(5.490) M(3.394) A(2.450) T(0.575) L(0.446) S(0.196) V(-0.42) I(-0.46)   Q(-1.03) C(-1.19) D(-1.35) F(-1.35)
R(-1.47) K(-1.47) P(-1.70) N(-1.70) E(-1.70) W(-1.80) H(-2) Y(-2.03)
Gap (0)
Pos 1 H(7.489) P(6.083) Y(1.493) N(0.575) D(0.575) T(0.523) E(-0.29) Q(-0.29)   R(-0.42) S(-1) K(-1) A(-1.47) F(-1.47)
G(-2) M(-2) V(-2) W(-2.42) C(-3) I(-3) L(-3)
Gap (0)
Pos 2 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2)   L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 3 P(6.776) V(2.400) I(1.400) T(0.789) M(-0.42) L(-0.53) A(-0.70) S(-1.13)   E(-1.13) Q(-1.13) K(-1.13) N(-1.18)
D(-1.18) G(-2.13) H(-2.13) R(-2.13) C(-2.17) Y(-2.17) F(-2.42) W(-3.70)
//

===============================
 SLIM 127
===============================
ID           Filamin.clust.0.25.0
Center             2brq_AC_0
AvSimToCtr 0.460
AvRMSDToCtr 0.943 A
Size         9
NumDistinct 7
FracDDI            0.142857142857143
FracPeptides       0.714285714285714
FracIntra    0.285714285714286
Species            HOMO SAPIENS (6)
Conservation       1

Members
      2bp3_AT_0 2bp3_BS_0 2brq_BD_0 2jf1_AT_0 2w0p_AC_0 2w0p_BC_0 2k7q_AA_1 2j3s_AA_2 2j3s_BB_1

Peptides
      2brq-C 2bp3-T 2jf1-T 2w0p-C 2w0p-C

PartnerDomains
      Filamin (2j3s_AA_2)

Dist Members Intf Alignment
      2brq_AC_0   P     L     Y        K      S      A      I      T      T      T      I      N      P
      2bp3_AT_0         T     F        R      S      S      L      F      L      W      V      R
      2jf1_AT_0         L     F        K      S      A      T             T      V      M      N
      2w0p_AC_0         R     V        A      S      S      V      F      I      T
      2w0p_BC_0               A        S      S      V      F      I      T
      2k7q_AA_1               R        M      S      H      L      K      V      G      S      A      A
      2j3s_AA_2               V        K      E      S      I      T      R

Dist Members ResidueID Alignment
      2brq_AC_0   776   777   778      779    780    781    782    783    784    785    786    787    788
      2bp3_AT_0         562   563      564    565    566    567    568    569    570    571    572
      2jf1_AT_0         753   754      755    756    757    758           760    761    762    763
      2w0p_AC_0         8     9        10     11     12     13     14     15     16
      2w0p_BC_0               10       11     12     13     14     15     16
      2k7q_AA_1               1959     1960   1961   1962   1963   1964   1965   1966   1967   1968   1969
      2j3s_AA_2               2140     2141   2142   2143   2144   2145   2146

Alignment Occupancy     0.142 0.571 1         1      1      1      1      0.857 1       0.714 0.571 0.571 0.285
Gap in betw Columns     0     0     0         0      0      0      0      0     0       0

SLIM RegEx        [LTR][FVARY][KSAMR][SE][SAHV][ILFTV][FTKI][TRILV][TWGV][SMIV][NAR]
SLIM Coverage           0.857142857142857
SLIM PSSM Match Cutoff 26.4198379737273
SLIM I=181997 Im=4813 Id=309 Idm=12
SLIM PSSM p-value 0.0520364438178358

PSSM Listing
Pos 0 R(3.058) L(2.749) T(2.065) V(1.751) M(0.795) I(0.759) K(0.212) Q(-0.56) S(-0.73) P(-0.86) G(-0.88) D(-0.88)
F(-1.16) N(-1.20) E(-1.20) H(-1.20) A(-1.55) C(-1.80) Y(-1.93) W(-2.93)
Gap (0)
Pos 1 Y(5.090) F(4.772) R(3.058) V(2.758) A(2.103) I(1.814) W(0.620) H(0.290) M(0.198) L(0.171) K(0.165) Q(-0.60)
S(-0.62) C(-1.16) E(-1.31) N(-1.41) T(-1.60) G(-1.62) P(-2.09) D(-2.60)
Gap (0)
Pos 2 K(4.172) R(3.199) M(3.068) S(2.165) A(2.134) Q(0.637) E(0.420) L(0.186) N(0.031) T(-0.02) I(-0.71) H(-0.93)
G(-0.99) D(-1.06) P(-1.19) C(-1.28) F(-1.56) Y(-1.78) W(-2.35) V(-2.44)
Gap (0)
Pos 3 S(3.848) E(3.093) T(0.905) N(0.905) A(0.868) D(0.648) Q(0.648) K(0.219) G(-0.13) H(-0.78) R(-0.78) P(-1) M(-
1.09) C(-1.14) Y(-2) I(-2.09) L(-2.09) V(-2.09) F(-2.09) W(-3)
Gap (0)
Pos 4 H(6.054) S(3.188) A(2.828) V(2.068) I(1.111) N(0.510) T(0.359) Y(0.186) D(-0.14) G(-0.30) E(-0.36) Q(-0.36)
M(-0.39) K(-0.50) L(-0.58) C(-0.68) R(-0.88) P(-1.19) F(-1.60) W(-2.78)
Gap (0)
Pos 5 F(4.065) I(3.032) L(2.904) V(2.666) T(2.068) M(1.244) Y(1.147) S(-0.68) W(-0.78) P(-0.82) A(-0.85) D(-0.86)
G(-0.88) C(-1.09) H(-1.46) Q(-1.50) K(-1.50) E(-1.62) N(-1.68) R(-2.12)
Gap (0)
Pos 6 F(4.748) K(3.068) T(2.760) I(2.095) Y(1.766) L(0.335) R(0.167) S(-0.02) D(-0.16) P(-0.17) M(-0.18) G(-0.20)
W(-0.21) E(-0.36) Q(-0.36) V(-0.61) H(-0.79) N(-0.79) A(-1.39) C(-1.59)
Gap (0)
Pos 7 T(3.157) R(3.063) I(2.467) V(2.408) L(2.232) M(0.714) K(0.425) S(0.243) P(0.197) D(0.183) G(0.179) Q(-0.14)
E(-0.50) N(-0.52) H(-0.52) A(-0.78) F(-0.90) C(-1.13) Y(-1.44) W(-2.78)
Gap (0)
Pos 8 W(9.054) G(4.067) T(2.773) V(2.077) I(1.070) Y(0.143) S(-0.05) D(-0.17) P(-0.20) M(-0.59) F(-0.72) L(-0.80)
A(-0.92) Q(-1.06) E(-1.10) H(-1.10) K(-1.10) N(-1.15) C(-1.69) R(-1.97)
Gap (0)
Pos 9 M(3.092) I(2.404) V(2.107) S(2.065) L(0.923) A(-0.45) T(-0.73) N(-0.86) F(-1.02) Q(-1.16) K(-1.50) C(-1.55)
E(-1.66) Y(-1.73) D(-1.80) G(-1.83) R(-2.12) P(-2.31) H(-2.45) W(-2.60)
Gap (0)
Pos 10 N(4.748) R(3.069) A(2.065) K(0.332) S(0.196) D(-0.20) Q(-0.31) E(-0.73) G(-0.80) T(-0.93) H(-1.31) C(-1.80)
M(-1.93) P(-2.20) L(-2.45) Y(-2.55) I(-2.60) V(-3.20) F(-3.20) W(-3.93)
//

===============================
 SLIM 128
===============================
ID          Fimbrial.clust.0.15.1
Center            3bfq_GF_0
AvSimToCtr 0.405
AvRMSDToCtr 1.461 A
Size         6
NumDistinct 4
FracDDI             0.25
FracPeptides        0.5
FracIntra    0.25
Species             ESCHERICHIA COLI (2)
Conservation        1

Members
      1n12_AB_0 1n12_CD_0 2uy6_CB_0 3bfw_AB_0 3bfw_CD_0 2jmr_AA_0

Peptides
      3bfq-F 1n12-B

PartnerDomains
      Fimbrial (2uy6_CB_0)

Dist Members Intf Alignment
      3bfq_GF_0   A     D         S      T     I      T      I      R      G      Y      V     R     D     N    R
      1n12_AB_0                   S      D     V      A      F      R      G      N      L     L     D
      2uy6_CB_0                          K     V      T      F      N      N      T      V     V     D
      2jmr_AA_0                                                                   Y      V     R     D

Dist Members ResidueID Alignment
      3bfq_GF_0   1     2     3          4     5      6      7      8      9      10     11    12    13    14   15
      1n12_AB_0               1          2     3      4      5      6      7      8      9     10    11
      2uy6_CB_0                          10    11     12     13     14     15     16     17    18    19
      2jmr_AA_0                                                                   175    176   177   178

Alignment Occupancy        0.25   0.25   0.5   0.75   0.75   0.75   0.75   0.75   0.75   1     1     1     1    0.25   0.25
Gap in betw Columns        0      0      0     0      0      0      0      0      0      0

SLIM   RegEx        S[TDK][VI][TA][FI][RN][GN][YTN][VL][RLV]D
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 22.2688817675107
SLIM   I=181997 Im=6032 Id=3 Idm=1
SLIM   PSSM p-value 0.0929495257764327

PSSM Listing
Pos 0 S(3.306) T(0.306) A(0.306) N(0.306) G(-0.69) D(-0.69) E(-0.69) Q(-0.69) K(-0.69) C(-1.69) P(-1.69) H(-1.69)
R(-1.69) M(-1.69) I(-2.69) L(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
Gap (0)
Pos 1 D(4.621) K(3.622) T(2.679) E(1.021) R(0.679) S(0.165) N(0.165) Q(0.165) P(-0.14) G(-0.21) H(-0.83) A(-1.52)
M(-1.62) C(-2.14) Y(-2.52) L(-2.62) I(-2.83) V(-2.83) F(-2.83) W(-3.52)
Gap (0)
Pos 2 V(3.331) I(3.165) L(1.165) M(0.712) A(-0.52) F(-0.83) C(-1.28) Y(-1.28) S(-2.28) T(-2.28) P(-2.52) E(-2.52)
Q(-2.52) K(-2.52) N(-3.28) D(-3.28) H(-3.28) R(-3.28) W(-3.28) G(-3.52)
Gap (0)
Pos 3 T(3.310) A(2.627) S(0.712) G(0.475) P(0.372) D(0.331) N(-0.52) E(-0.52) Q(-0.52) K(-0.52) H(-0.62) C(-0.83)
R(-1.28) M(-1.28) I(-1.83) L(-1.83) V(-2.28) F(-2.28) Y(-2.28) W(-3.28)
Gap (0)
Pos 4 F(5.308) I(2.649) Y(2.315) L(0.853) W(0.315) M(0.165) V(-0.14) H(-1.62) C(-1.83) A(-1.83) S(-2.28) T(-2.28)
N(-3.28) D(-3.28) E(-3.28) Q(-3.28) R(-3.28) K(-3.28) G(-3.52) P(-3.83)
Gap (0)
Pos 5 N(4.618) R(4.310) K(1.372) Q(0.475) S(-0.14) E(-0.28) D(-0.29) H(-0.52) T(-0.83) G(-1.14) A(-1.52) M(-1.52)
P(-2.28) Y(-2.28) L(-2.52) C(-3.28) I(-3.28) V(-3.28) F(-3.28) W(-3.52)
Gap (0)
Pos 6 G(5.308) N(4.614) T(0.475) S(0.165) D(-0.14) A(-0.62) V(-0.66) E(-1.14) Q(-1.14) R(-1.14) K(-1.14) H(-1.83)
P(-2.28) W(-2.62) M(-2.83) Y(-2.83) C(-3.28) F(-3.28) I(-3.83) L(-3.83)
Gap (0)
Pos 7 Y(6.306) N(4.616) T(2.636) F(2.311) H(1.395) W(1.311) S(0.355) D(0.325) G(-0.04) P(-0.30) Q(-0.37) E(-0.56)
K(-0.56) R(-0.89) M(-1.17) I(-1.46) L(-1.46) V(-1.46) A(-1.64) C(-1.75)
Gap (0)
Pos 8 V(3.827) I(2.827) L(2.752) M(1.357) A(-0.17) F(-0.64) C(-1) Y(-1) S(-2) T(-2) Q(-2) K(-2) P(-2.17) E(-2.17)
R(-2.64) W(-2.64) N(-3) H(-3) G(-3.17) D(-3.17)
Gap (0)
Pos 9 R(4.307) V(2.928) L(2.667) I(1.930) K(1.325) M(0.997) Q(0.355) E(-0.60) A(-0.64) N(-0.64) H(-0.64) F(-1.00)
S(-1.37) T(-1.37) Y(-1.37) C(-1.56) P(-2.17) G(-2.46) D(-2.46) W(-2.64)
Gap (0)
Pos 10 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
//

===============================
 SLIM 129
===============================
ID           Flavi_glycop_C.clust.0.15.0
Center             1urz_FE_1
AvSimToCtr 0.550
AvRMSDToCtr 1.246 A
Size         9
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            DENGUE VIRUS TYPE 2 (3)
Conservation       1

Members
      1oan_AB_1 1oan_BA_1 1oke_AB_1 1oke_BA_1 1urz_AC_1 1urz_DF_1 1urz_BA_1 1urz_CB_1 1urz_ED_1
Peptides

PartnerDomains
      Flavi_glycoprot (1urz_FE_1,1oan_AB_1,1oan_BA_1,1oke_AB_1)

Dist Members Intf Alignment
      1urz_FE_1   E     D        N      K      V     T     S      F      T      S      S      E     K     I      D
      1oan_AB_1                                            G      L                    F      G
      1oan_BA_1                                W           G                           F      G
      1oke_AB_1                         W                         L                    F      G

Dist Members ResidueID Alignment
      1urz_FE_1   51    133   135       136    138   162   164    165    166    168    169    170   171   173    181
      1oan_AB_1                                            106    107                  108    109
      1oan_BA_1                                101         106                         108    109
      1oke_AB_1                         101                       107                  108    109

Alignment Occupancy       0.25   0.25   0.25   0.5   0.5   0.25   0.75   0.75   0.25   0.25   1     1     0.25   0.25   0.25
Gap in betw Columns       1      4,13   0      0,3   0

SLIM   RegEx        [GS][LF].{0,3}[FS][GE]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 19.255609615288
SLIM   I=181997 Im=7998 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 G(5.308) S(2.649) T(0.712) A(0.165) N(-0.29) V(-0.62) D(-0.83) E(-1.14) Q(-1.14) K(-1.14) P(-1.83) H(-1.83)
R(-1.83) C(-2.14) M(-2.14) W(-2.52) F(-2.83) Y(-2.83) I(-3.14) L(-3.14)
Gap (0)
Pos 1 F(4.618) L(3.315) V(2.315) Y(1.649) M(1.372) I(1.372) W(-0.29) C(-1.52) A(-1.52) H(-2.14) S(-2.28) T(-2.28)
Q(-2.52) R(-2.52) K(-2.52) N(-3.28) E(-3.28) P(-3.52) G(-3.83) D(-3.83)
Gap (0,3)
Pos 2 F(5.712) Y(2.714) S(2.621) W(0.718) M(-0.17) I(-0.24) L(-0.24) T(-0.24) A(-0.24) N(-0.33) H(-1) V(-1.17) G(-
1.24) D(-1.24) E(-1.24) Q(-1.24) K(-1.24) C(-1.64) R(-2.04) P(-2.24)
Gap (0)
Pos 3 G(5.712) E(3.616) T(0.827) D(0.752) Q(0.667) S(0) A(-0.17) K(-0.24) V(-0.27) N(-1.04) H(-1.04) R(-1.04) P(-
1.64) W(-2.17) M(-2.64) Y(-2.64) F(-3) C(-3.17) I(-3.64) L(-3.64)
//

===============================
 SLIM 130
===============================
ID          FolB.clust.0.2.2
Center            1sql_LM_0
AvSimToCtr 0.478
AvRMSDToCtr 1.257 A
Size         29
NumDistinct 8
FracDDI           1
FracPeptides      0
FracIntra    0
Species           MYCOBACTERIUM TUBERCULOSIS (5), STAPHYLOCOCCUS AUREUS (1), ARABIDOPSIS THALIANA (1),
STREPTOCOCCUS PNEUMONIAE (1)
Conservation      0.625

Members
      1nbu_AG_0 1nbu_DF_0 1nbu_BH_0 1nbu_CE_0 1nbu_EC_0 1nbu_HB_0 1nbu_FD_0 1nbu_GA_0 2nm2_AC_0 2nm2_CA_0
      1sql_AH_0 1sql_OJ_0 1sql_CF_0 1sql_ML_0 1sql_FC_0 1sql_HA_0 1sql_JO_0 1sql_BG_0 1sql_PI_0 1sql_DE_0
      1sql_NK_0 1sql_ED_0 1sql_KN_0 1sql_GB_0 1sql_IP_0 2cg8_AD_0 2cg8_BC_0 2cg8_CB_0 2cg8_DA_0

Peptides

PartnerDomains
      FolB (1sql_LM_0,1nbu_AG_0,1nbu_DF_0,1nbu_BH_0,1nbu_EC_0,1nbu_GA_0,2nm2_AC_0,2cg8_AD_0)

Dist Members Intf   Alignment
      1sql_LM_0     K     Y     F   I     E     E     T     L     M     N     V     A     L     I        K     S     T
      1nbu_AG_0     T     H               H           V     G     R     P           P     I     Q              T     F
      1nbu_DF_0     T     H               H           V     G     R     P           P     I              Q     T     F
      1nbu_BH_0     T     H               H           V           R     Q     A     P
      1nbu_EC_0                           H           A           R     Q           P           I        P     Q     F
      1nbu_GA_0     T     H               H           A     G     R     P           P     I              P     Q     F
      2nm2_AC_0     R     Y     Y   L     A     E     E     I     I     N     P     P
      2cg8_AD_0     E     F     Y   F     S     E     E     L           W     A     P           V        H     L     S

Dist Members ResidueID Alignment
      1sql_LM_0   10    12    14    18    20    21    23    24    27    101   102   103   104   105      106   107
      108
      1nbu_AG_0   11    13                21          24    26    28    100         103   104   106            107
      108
      1nbu_DF_0   11    13                21          24    26    28    100         103   104            106   107
      108
      1nbu_BH_0   11    13                21          24          28    101   102   103
      1nbu_EC_0                           21          25          28    101         103         104      105   106
      108
      1nbu_GA_0   11    13                21          25    26    28    100         103   104            105   106
      108
      2nm2_AC_0   11    13    15    19    21    22    24    25    28    102   103   104
        2cg8_AD_0   10    12    14    18    20    21    23    24            101   102   103       104   105   106
        107

Alignment Occupancy       0.875 0.875 0.375 0.375 1     0.375 1     0.75    0.875 1     0.5   1   0.5   0.5   0.625
      0.75 0.75
Gap in betw Columns       1     7     2,3   0,1   1,2   71,73 0     0       0     0,1   0     0   0,1

SLIM   RegEx        [PQNW][APV][PA][IL].{0,1}[IQV][PHQK][QTSL].{0,1}[FST]
SLIM   Coverage           0.625
SLIM   PSSM Match Cutoff 24.0917082714688
SLIM   I=181997 Im=10572 Id=1 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 W(8.920) P(6.019) N(4.617) Q(3.624) E(0.807) T(0.422) S(0.071) K(0.071) D(0.067) Y(0.065) R(-0.01) H(-0.89)
M(-0.96) F(-0.99) G(-1.04) A(-1.30) V(-2.27) L(-2.50) C(-2.80) I(-3)
Gap (0)
Pos 1 P(4.921) A(2.626) V(1.927) I(0.958) S(-0.29) T(-0.80) M(-0.80) L(-0.82) C(-1.19) G(-1.29) E(-1.86) Q(-1.86)
K(-1.86) N(-1.93) R(-2.16) D(-2.45) Y(-2.45) F(-2.49) H(-2.86) W(-3.86)
Gap (0)
Pos 2 P(6.866) A(1.966) T(0.885) S(-0.41) N(-1) E(-1) Q(-1) K(-1) D(-1.08) G(-1.41) C(-1.78) R(-1.80) M(-1.80) H(-2)
V(-2) I(-2.41) L(-2.41) Y(-2.80) F(-3.41) W(-3.80)
Gap (0)
Pos 3 I(3.063) L(2.261) V(1.261) M(0.664) F(-0.69) C(-1.69) A(-1.69) Y(-1.69) S(-2.69) T(-2.69) Q(-3.33) R(-3.33)
K(-3.33) W(-3.33) P(-3.69) N(-3.69) E(-3.69) H(-3.69) D(-3.86) G(-4.69)
Gap (0,1)
Pos 4 Q(2.922) I(2.782) V(2.017) L(0.790) M(0.134) E(-0.04) K(-0.99) R(-1.02) F(-1.19) A(-1.33) Y(-1.69) S(-1.73)
T(-1.73) C(-1.93) N(-1.94) D(-1.94) H(-1.94) P(-2.58) W(-3.33) G(-3.58)
Gap (0)
Pos 5 H(5.921) P(5.614) Q(2.950) K(2.945) E(0.392) R(0.352) T(0.053) Y(-0.00) N(-0.38) D(-0.50) S(-0.94) M(-1.50)
A(-1.60) G(-2.47) V(-2.60) F(-2.76) L(-2.94) W(-3.10) C(-3.47) I(-3.47)
Gap (0)
Pos 6 Q(3.624) T(2.657) S(2.050) L(1.932) V(0.953) E(0.801) M(0.271) K(0.069) D(0.055) I(-0.01) N(-0.16) G(-0.17)
R(-0.18) P(-0.19) A(-0.56) H(-0.59) C(-1.62) Y(-1.66) F(-1.67) W(-2.66)
Gap (0,1)
Pos 7 F(5.307) Y(2.310) S(1.978) T(1.978) W(0.315) M(-0.52) I(-0.62) L(-0.62) G(-0.71) N(-0.71) D(-0.71) A(-0.79)
P(-0.92) H(-1.03) E(-1.29) Q(-1.29) K(-1.29) V(-1.52) C(-1.83) R(-2.14)
//

===============================
 SLIM 131
===============================
ID          GFP.clust.0.15.12
Center            2dd9_AC_0
AvSimToCtr 0.158
AvRMSDToCtr 3.180   A
Size         3
NumDistinct 4
FracDDI             1
FracPeptides        0
FracIntra    0
Species             AZOTOBACTER VINELANDII (1), CHIRIDIUS POPPEI (1)
Conservation        0.5

Members
      2whs_BC_0 2ie2_BD_0 2qle_BC_0

Peptides

PartnerDomains
      GFP (2dd9_AC_0,2whs_BC_0,2ie2_BD_0,2qle_BC_0)

Dist Members Intf Alignment
      2dd9_AC_0   Q     P       K      T      L     K     D     S
      2whs_BC_0                 K      K      Y     E           K
      2ie2_BD_0   A                    Q      K     R
      2qle_BC_0                        P      V     L     L

Dist Members ResidueID Alignment
      2dd9_AC_0   122   124   127      129    158   159   160   162
      2whs_BC_0               6        32     34    35          70
      2ie2_BD_0   127                  133    134   135
      2qle_BC_0                        192    193   194   195

Alignment Occupancy       0.5   0.25   0.5    1     1     1     0.5    0.5
Gap in betw Columns       4     1,25   0,28   0     0     1

SLIM   RegEx        [KYLV][RKLE][DL].[SK]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 15.4893873138399
SLIM   I=181997 Im=10431 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Y(5.614) K(3.616) V(2.932) L(2.671) I(1.942) F(1.681) M(0.997) H(0.675) R(0.656) W(0.645) Q(-0.17) E(-0.27)
A(-0.75) S(-1.04) T(-1.04) N(-1.17) C(-1.46) P(-1.89) D(-2.10) G(-2.75)
Gap (0)
Pos 1 K(3.680) R(3.669) E(3.638) L(2.619) V(1.621) Q(1.175) M(0.725) D(0.681) I(0.633) N(-0.27) S(-0.46) T(-0.46)
H(-0.50) A(-1) F(-1.24) P(-1.46) Y(-1.64) C(-2.10) G(-2.24) W(-2.64)
Gap (0)
Pos 2 D(4.613) L(2.614) V(1.616) E(0.620) M(0.620) I(0.620) T(-0.33) N(-0.36) S(-1.25) Q(-1.25) F(-1.33) A(-2.07)
K(-2.07) C(-2.25) P(-2.25) H(-2.25) Y(-2.25) G(-2.33) R(-2.69) W(-3.25)
Gap (1)
Pos 3 K(3.620) S(2.631) R(0.662) T(-0.07) N(-0.07) E(-0.07) Q(-0.07) A(-0.25) D(-1.07) G(-1.25) P(-1.69) H(-1.69)
M(-1.69) C(-2.25) L(-2.69) Y(-2.69) I(-3.07) V(-3.07) F(-3.07) W(-3.69)
//

===============================
 SLIM 132
===============================
ID           GP120.clust.0.15.1
Center             2ny3_AB_0
AvSimToCtr 0.610
AvRMSDToCtr 0.425 A
Size         21
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (1)
Conservation       1

Members
      1g9m_GC_0 1rzj_GC_0 2nxy_AB_0 2nxz_AB_0 2ny4_AB_0 2ny2_AB_0 2ny1_AB_0 2ny0_AB_0 2ny5_GC_0 2ny6_AB_0
      1gc1_GC_0 1g9n_GC_0 1rzk_GC_0 1yyl_GM_0 1yym_GM_0 2i60_GM_0 2i5y_GM_0 1yyl_PS_0 2i5y_PS_0 1yym_PS_0
      2i60_PS_0

Peptides

PartnerDomains
      Toxin_2 (1yyl_GM_0,1yym_GM_0,2i60_GM_0)
      ig (2ny3_AB_0)

Dist Members Intf Alignment
      2ny3_AB_0   K     S     Q       H      K      S      N      Q      I      K      Q      G      S      F      L      T      K
      G     P     N     R     S       L      W      D      Q      E
      1yyl_GM_0                                                                        A      G      S             C      A      C
      1yym_GM_0                                                                               G      S      F      C      A      C
      2i60_GM_0                                                                                      T      F      C      A      C

Dist Members ResidueID Alignment
      2ny3_AB_0   1021 1023 1025      1027   1029   1031   1032   1033   1034   1035   1040   1041   1042   1043   1044   1045
      1046 1047 1048 1052 1059        1060   1061   1062   1063   1064   1085
      1yyl_GM_0                                                                        20     21     22            24     25
      26
        1yym_GM_0                                                                               21    22     23   24     25
        26
        2i60_GM_0                                                                                     22     23   24     25
        26

Alignment Occupancy       0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.5   0.75   1    0.75   1    1
      1     0.25 0.25     0.25   0.25   0.25   0.25   0.25   0.25   0.25   0.25
Gap in betw Columns       0      0      0      0      0      0

SLIM   RegEx        [AQ]G[ST]F[CL][AT][CK]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 19.0728263422014
SLIM   I=181997 Im=5342 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(3.616) A(2.620) E(0.662) S(-0.07) R(-0.25) K(-0.25) T(-1.07) N(-1.07) M(-1.07) G(-1.25) D(-1.25) H(-1.25)
C(-1.33) P(-1.69) L(-2.07) Y(-2.07) I(-2.25) V(-2.69) F(-3.07) W(-3.07)
Gap (0)
Pos 1 G(5.712) T(0.712) S(-0.28) A(-0.28) V(-0.28) D(-1.28) P(-2.28) N(-2.28) E(-2.28) Q(-2.28) H(-2.28) R(-2.28)
K(-2.28) W(-2.28) C(-3.28) M(-3.28) F(-3.28) Y(-3.28) I(-4.28) L(-4.28)
Gap (0)
Pos 2 S(3.728) T(2.752) N(0.827) A(0.756) G(0.357) D(0.357) E(0) Q(0) K(0) P(-0.04) H(-0.64) C(-1) R(-1) M(-1) I(-2)
L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 3 F(5.712) Y(2.712) W(0.712) M(-0.28) I(-0.28) L(-0.28) H(-1.28) V(-1.28) C(-2.28) S(-2.28) T(-2.28) A(-2.28)
G(-3.28) N(-3.28) D(-3.28) E(-3.28) Q(-3.28) R(-3.28) K(-3.28) P(-4.28)
Gap (0)
Pos 4 C(8.712) L(2.633) V(1.667) M(0.752) I(0.752) A(-0.17) F(-1.04) S(-1.17) T(-1.17) Y(-1.64) W(-2) Q(-2.64) R(-
2.64) K(-2.64) P(-3) N(-3) H(-3) G(-3.17) D(-3.17) E(-3.64)
Gap (0)
Pos 5 A(3.714) T(2.633) S(1) G(0.357) P(-0.04) C(-0.17) D(-0.24) N(-0.64) E(-0.64) Q(-0.64) K(-0.64) R(-1) M(-1)
H(-1.04) I(-1.17) L(-1.17) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 6 C(8.712) K(3.614) R(0.633) A(-0.17) Q(-0.33) E(-0.36) S(-0.64) T(-0.64) M(-1) L(-1.17) I(-1.24) V(-1.24) N(-
1.24) Y(-2) P(-2.04) D(-2.04) H(-2.04) F(-2.17) W(-2.17) G(-2.64)
//

===============================
 SLIM 133
===============================
ID          GST_C.clust.0.2.1
Center            2vcv_NM_1
AvSimToCtr 0.511
AvRMSDToCtr 0.950 A
Size         98
NumDistinct 9
FracDDI             0.444444444444444
FracPeptides        0
FracIntra    0
Species             HOMO SAPIENS (3), MUS MUSCULUS (3), SUS SCROFA (1), ONCHOCERCA VOLVULUS (1), FASCIOLA HEPATICA (1)
Conservation         0.333333333333333

Members
      12gs_AB_1   12gs_BA_1   17gs_AB_1   17gs_BA_1   2a2s_AB_1   3csh_AB_1   3csi_AB_1   3csi_CD_1   1lbk_AB_1   1lbk_BA_1
      1kbn_AB_1   1kbn_BA_1   2a2s_BA_1   3csh_BA_1   3csi_BA_1   3csi_DC_1   2pgt_AB_1   19gs_AB_1   19gs_BA_1   3csj_BA_1
      3csj_AB_1   3dgq_AB_1   3dd3_BA_1   1glq_BA_1   2glr_BA_1   2oad_BA_1   2oad_AB_1   1gss_AB_1   1gss_BA_1   1aqx_BA_1
      1aqx_DC_1   2gsr_AB_1   2gsr_BA_1   1tu8_AB_1   1f3b_AB_1   1f3b_BA_1   1gsd_CD_1   2vct_EF_1   2vcv_FE_1   1tdi_AB_1
      1tdi_BA_1   2vcv_AB_1   2vcv_KL_1   2vcv_BA_1   2vcv_LK_1   2vcv_DC_1   2vcv_GH_1   2vcv_EF_1   2vcv_HG_1   2vcv_MN_1
      2vcv_OP_1   2vcv_PO_1   2vct_FE_1   2vcv_IJ_1   1gse_BA_1   1usb_BA_1   1xwg_AB_1   1usb_AB_1   2r3x_AB_1   2r3x_BA_1
      2wju_AB_1   2wju_GH_1   1pl1_BA_1   1pl2_BA_1   1xwg_BA_1   1ydk_BA_1   2r6k_AB_1   2wju_BA_1   2wju_EF_1   2wju_FE_1
      2r6k_BA_1   2vcv_CD_1   2vcv_JI_1   2vct_GH_1   2vct_HG_1   2wju_CD_1   2vct_AB_1   2vct_DC_1   1vf2_AB_1   1vf2_BA_1
      1vf3_BA_1   1k3o_AB_1   1guk_BA_1   1gtu_AB_1   2c4j_CD_1   2c4j_DC_1   2c4j_AB_1   2f3m_CD_1   2gst_AB_1   6gst_AB_1
      6gsy_AB_1   2gst_BA_1   6gst_BA_1   5fwg_AB_1   5fwg_BA_1   3gtu_BA_1   2fhe_AB_1   2fhe_BA_1

Peptides

PartnerDomains
      GST_N (2vcv_NM_1,1f3b_BA_1,1guk_BA_1,2fhe_AB_1)

Dist Members Intf   Alignment
      2vcv_NM_1     R     G       M       F     Q       Q     Q
      12gs_AB_1                   L       Y             Q     Q
      2gsr_AB_1                   L       F     R       Q     Q
      1tu8_AB_1     K             Q       F     G       Q     Q
      1f3b_AB_1     K             M       F     D       Q     Q
      1f3b_BA_1     K     G       M       F     D       Q     Q
      1guk_BA_1                   L       F     G       Q     Q
      1gtu_AB_1     F             D       F     P       N     Q
      2fhe_AB_1           F       D       L     P       N     L

Dist Members ResidueID Alignment
      2vcv_NM_1   45    48    51          52    53      54    67
      12gs_AB_1               48          49            51    64
      2gsr_AB_1               46          47    48      49    62
      1tu8_AB_1   42          46          47    48      49    62
      1f3b_AB_1   44          50          51    52      53    66
      1f3b_BA_1   44    47    50          51    52      53    66
      1guk_BA_1               51          52    53      54    67
      1gtu_AB_1   50          55          56    57      58    71
        2fhe_AB_1         45    50    51      52   53    64

Alignment Occupancy       0.555 0.333 1       1    0.888 1    1
Gap in betw Columns       3,5   0     0       0    10,12

SLIM   RegEx        [MLDQ][FLY][DPGQR][QN]
SLIM   Coverage           0.666666666666667
SLIM   PSSM Match Cutoff 18.1257864727282
SLIM   I=181997 Im=6745 Id=352 Idm=9
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 D(4.497) M(3.952) L(3.029) Q(2.838) V(1.911) I(1.219) E(0.926) T(-0.12) N(-0.25) F(-0.38) K(-0.59) S(-0.69)
R(-0.69) A(-1.15) Y(-1.21) C(-1.33) H(-1.36) W(-1.67) P(-1.69) G(-2.12)
Gap (0)
Pos 1 F(5.756) Y(4.923) L(1.929) W(1.081) V(0.939) M(0.494) I(0.494) H(0.106) C(-1.82) A(-1.82) S(-2) T(-2) Q(-2.35)
R(-2.67) K(-2.67) N(-2.82) E(-2.82) G(-3.07) D(-3.07) P(-3.67)
Gap (0)
Pos 2 P(5.496) D(4.499) G(4.497) Q(2.840) R(2.826) E(0.988) T(0.675) K(0.275) N(-0.06) S(-0.38) A(-0.87) H(-1.01)
V(-1.25) M(-1.58) Y(-2.41) W(-2.83) L(-3.01) C(-3.11) I(-3.28) F(-3.28)
Gap (0)
Pos 3 Q(4.750) N(4.504) E(1.786) R(0.848) K(0.848) S(0.323) D(0.323) T(0) H(-0.15) M(-0.21) G(-1.11) P(-1.15) A(-
1.15) Y(-1.15) L(-2.15) V(-2.15) W(-2.21) C(-3) I(-3) F(-3)
//

===============================
 SLIM 134
===============================
ID           GST_N.clust.0.3.0
Center             1pgt_BA_0
AvSimToCtr 0.471
AvRMSDToCtr 0.957 A
Size         497
NumDistinct 65
FracDDI            0.0307692307692308
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (14), MUS MUSCULUS (5), GALLUS GALLUS (4), RATTUS NORVEGICUS (4), CAENORHABDITIS
ELEGANS (3), ONCHOCERCA VOLVULUS (3), NECATOR AMERICANUS (2), ZEA MAYS (2), SPHINGOMONAS PAUCIMOBILIS (2),
SACCHAROMYCES CEREVISIAE (2), ESCHERICHIA COLI (2), HELIGMOSOMOIDES POLYGYRUS (2), ANOPHELES GAMBIAE (2), ANOPHELES
CRACENS (2), DROSOPHILA MELANOGASTER (1), ESCHERICHIA COLI K12 (1), ARABIDOPSIS THALIANA (1), FASCIOLA HEPATICA (1),
SCHISTOSOMA HAEMATOBIUM (1), BURKHOLDERIA XENOVORANS (1), ANOPHELES DIRUS (1), PLASMODIUM FALCIPARUM (1), PROTEUS
MIRABILIS (1), SUS SCROFA (1), SCHISTOSOMA JAPONICUM (1), RATTUS RATTUS (1)
Conservation       0.229508196721311
Members
      10gs_AB_0   10gs_BA_0   17gs_AB_0   17gs_BA_0   4gss_AB_0   4gss_BA_0   1pgt_AB_0   2pgt_AB_0   2pgt_BA_0   11gs_AB_0
      11gs_BA_0   12gs_AB_0   9gss_AB_0   18gs_AB_0   9gss_BA_0   3gss_AB_0   5gss_AB_0   5gss_BA_0   3gss_BA_0   12gs_BA_0
      18gs_BA_0   1lbk_AB_0   1lbk_BA_0   1px6_BA_0   1px6_AB_0   1zgn_BA_0   2a2r_BA_0   2a2s_BA_0   3csh_BA_0   1px7_BA_0
      4pgt_AB_0   3pgt_BA_0   4pgt_BA_0   13gs_AB_0   13gs_BA_0   6gss_AB_0   6gss_BA_0   16gs_AB_0   16gs_BA_0   22gs_AB_0
      22gs_BA_0   19gs_AB_0   2gss_AB_0   2gss_BA_0   19gs_BA_0   3csj_AB_0   1eog_AB_0   1eog_BA_0   3csi_BA_0   3csi_DC_0
      3dd3_BA_0   1md3_AB_0   1zgn_AB_0   2a2r_AB_0   2a2s_AB_0   3csh_AB_0   1px7_AB_0   3csi_AB_0   3pgt_AB_0   3dgq_AB_0
      1md3_BA_0   1md4_BA_0   1md4_AB_0   3csj_BA_0   3dgq_BA_0   1kbn_AB_0   1kbn_BA_0   7gss_AB_0   7gss_BA_0   8gss_BA_0
      8gss_AB_0   1aqv_AB_0   1aqw_AB_0   1aqw_CD_0   1aqw_DC_0   1aqv_BA_0   1aqw_BA_0   3csi_CD_0   3dd3_AB_0   20gs_AB_0
      20gs_BA_0   1glp_AB_0   2glr_AB_0   1glq_AB_0   1glp_BA_0   2glr_BA_0   1glq_BA_0   2oa7_AB_0   2oa7_BA_0   2oad_AB_0
      2oac_BA_0   2oac_AB_0   2oad_BA_0   1gsy_BA_0   1gsy_AB_0   1gss_BA_0   2j9h_AB_0   2j9h_BA_0   14gs_AB_0   14gs_BA_0
      1bay_AB_0   1bay_BA_0   1gti_AB_0   1gti_BA_0   1gti_CD_0   1gti_DC_0   1gti_EF_0   1gti_FE_0   2gsr_AB_0   2gsr_BA_0
      1aqx_AB_0   1aqx_BA_0   1aqx_DC_0   1gss_AB_0   1aqx_CD_0   1eoh_AB_0   1eoh_FE_0   1eoh_BA_0   1eoh_HG_0   1eoh_CD_0
      1eoh_EF_0   1eoh_DC_0   1eoh_GH_0   1tu7_AB_0   1tu8_BA_0   1tu8_DC_0   1tu7_BA_0   1tu8_AB_0   1tu8_CD_0   2aaw_AC_0
      2aaw_CA_0   1b48_AB_0   1b48_BA_0   1guk_AB_0   1guk_BA_0   1ev4_CD_0   1ev9_CD_0   1ev4_DC_0   1ev9_DC_0   1f3a_AB_0
      1f3b_AB_0   1f3a_BA_0   1f3b_BA_0   1ml6_AB_0   1ml6_BA_0   1gsd_AB_0   1gsd_DC_0   1gsd_BA_0   1gsd_CD_0   1gsf_AB_0
      1gsf_DC_0   1gsf_BA_0   1gsf_CD_0   1gse_AB_0   1gse_BA_0   1k3l_BA_0   1pkw_BA_0   1pl1_BA_0   1pl2_BA_0   1ydk_BA_0
      1pkz_BA_0   1xwg_BA_0   1usb_BA_0   1usb_AB_0   1k3y_AB_0   1k3y_BA_0   2r3x_BA_0   2r3x_AB_0   1k3l_AB_0   1pkw_AB_0
      1pl1_AB_0   1pl2_AB_0   1pkz_AB_0   1xwg_AB_0   1ydk_AB_0   2r6k_BA_0   2r6k_AB_0   2wju_BA_0   1tdi_AB_0   1tdi_BA_0
      2vcv_CD_0   2vcv_NM_0   2vcv_PO_0   2vcv_HG_0   2vcv_EF_0   2vcv_JI_0   2vct_FE_0   2vcv_DC_0   2vcv_IJ_0   2vcv_AB_0
      2vcv_KL_0   2vcv_MN_0   2vcv_OP_0   2vcv_FE_0   2vcv_GH_0   1guh_AB_0   1guh_CD_0   1guh_BA_0   1guh_DC_0   2vct_EF_0
      2vct_HG_0   2vct_GH_0   2wju_HG_0   2wju_AB_0   2wju_FE_0   2wju_DC_0   2wju_EF_0   2wju_CD_0   2vct_AB_0   2vct_CD_0
      2vcv_BA_0   2vcv_LK_0   1k3o_AB_0   1k3o_BA_0   2wju_GH_0   1vf2_AB_0   1vf2_BA_0   1vf3_AB_0   1vf3_BA_0   2vct_BA_0
      2vct_DC_0   1gul_AB_0   1gul_CD_0   1gul_BA_0   1gul_GH_0   1gul_HG_0   1gul_DC_0   1gul_EF_0   1gul_FE_0   1gum_AB_0
      1gum_CD_0   1gum_BA_0   1gum_GH_0   1gum_HG_0   1gum_EF_0   1gum_FE_0   1gum_DC_0   1g6w_AB_0   1k0b_AB_0   1jzr_AB_0
      1g6w_CD_0   1k0b_CD_0   1k0c_BA_0   1k0d_BA_0   1k0d_CD_0   1k0c_CD_0   1k0d_AB_0   1k0c_DC_0   1k0d_DC_0   1k0c_AB_0
      1k0a_BA_0   1jzr_CD_0   1k0a_AB_0   1g6w_BA_0   1k0b_BA_0   1jzr_BA_0   1g6w_DC_0   1k0b_DC_0   1jzr_DC_0   1g6y_BA_0
      1hqo_AB_0   1hqo_BA_0   1g6y_AB_0   3c8e_AB_0   3c8e_BA_0   1oe7_AB_0   1oe7_BA_0   1oe8_AB_0   1oe8_BA_0   2f8f_AB_0
      2f8f_BA_0   2c8u_AB_0   2c8u_BA_0   2c80_AB_0   2c80_BA_0   2cai_AB_0   2cai_BA_0   2jl4_AB_0   2jl4_BA_0   2v6k_AB_0
      2v6k_BA_0   1a0f_AB_0   1a0f_BA_0   1n2a_AB_0   1n2a_BA_0   2pmt_AB_0   2pmt_CD_0   2pmt_BA_0   2pmt_DC_0   1f2e_AB_0
      1f2e_DC_0   1f2e_BA_0   1f2e_CD_0   2dsa_AB_0   2dsa_CD_0   2dsa_BA_0   2dsa_DC_0   2gdr_AB_0   2gdr_EF_0   2gdr_BA_0
      2gdr_DC_0   2gdr_FE_0   2gdr_CD_0   1axd_AB_0   1axd_BA_0   1bye_CD_0   1bye_DC_0   1bye_BA_0   1bye_AB_0   1gnw_AB_0
      1gnw_BA_0   1jlv_AB_0   1jlv_DC_0   1pn9_AB_0   1pn9_BA_0   1jlv_BA_0   1jlv_CD_0   1jlv_EF_0   1jlv_FE_0   1jlw_AB_0
      1jlw_BA_0   1v2a_AB_0   1v2a_BA_0   1v2a_CD_0   1v2a_DC_0   2c3n_AB_0   2c3n_BA_0   2c3n_DC_0   2c3t_CD_0   2c3t_DC_0
      2c3t_AB_0   2c3q_AB_0   2c3q_CD_0   2c3q_DC_0   2c3q_BA_0   2c3n_CD_0   2c3t_BA_0   2cz3_AB_0   2cz3_BA_0   1iyh_AC_0
      1iyi_AD_0   1iyh_BD_0   1iyi_BC_0   1v40_CB_0   1v40_DA_0   2cvd_CB_0   2cvd_DA_0   3ee2_AB_0   1iyh_CA_0   1iyi_DA_0
      1iyh_DB_0   1iyi_CB_0   2cvd_AD_0   2cvd_BC_0   1v40_AD_0   1v40_BC_0   3ee2_BA_0   2vcq_AB_0   2vcw_AB_0   2vcz_AB_0
      2vd0_AB_0   2vcx_AB_0   2vd1_AB_0   2vcq_BA_0   2vcw_BA_0   2vcz_BA_0   2vcx_BA_0   2vd0_BA_0   2vd1_BA_0   1pd2_12_0
      1pd2_21_0   2vcq_CD_0   2vcq_DC_0   2vcw_DC_0   2vcz_CD_0   2vd0_CD_0   2vcx_CD_0   2vd1_CD_0   2vcw_CD_0   2vcz_DC_0
      2vcx_DC_0   2vd1_DC_0   2vd0_DC_0   1tw9_AB_0   1tw9_HG_0   1tw9_BA_0   1tw9_DC_0   1tw9_FE_0   1tw9_EF_0   1tw9_GH_0
      1tw9_CD_0   2on5_AG_0   2on5_BC_0   2on5_CB_0   2on5_GA_0   2on5_DF_0   2on5_EH_0   2on5_FD_0   2on5_HE_0   2on7_AD_0
      2on7_BC_0   2on7_CB_0   2on7_DA_0   1zl9_AB_0   1zl9_BA_0   1yq1_AB_0   1yq1_BA_0   2hnl_AB_0   2hnl_BA_0   1m0u_AB_0
      1m0u_BA_0   2il3_AB_0   2il3_BA_0   2imi_AB_0   2imk_AB_0   2imi_BA_0   2imk_BA_0   1c72_AB_0   1c72_CD_0   1c72_BA_0
      1c72_DC_0   1gsu_AB_0   1gsu_BA_0   1gtu_AB_0   1gtu_CD_0   1gtu_BA_0   1gtu_DC_0   1xw6_AB_0   1xw6_CD_0   1xw6_BA_0
      1xw6_DC_0   1xwk_AC_0   1xwk_CA_0   1yj6_AB_0   1yj6_BA_0   2f3m_AB_0   2f3m_EF_0   2f3m_BA_0   2f3m_FE_0   2f3m_CD_0
      2f3m_DC_0   1mtc_AB_0   2gst_AB_0   6gsx_AB_0   3gst_AB_0   6gsu_AB_0   6gsw_AB_0   4gst_AB_0   6gst_AB_0   2gst_BA_0
      3gst_BA_0   6gsu_BA_0   6gsw_BA_0   6gsx_BA_0   4gst_BA_0   6gsv_AB_0   6gsv_BA_0   5gst_AB_0   6gst_BA_0   5gst_BA_0
      6gsy_BA_0   6gsy_AB_0   5fwg_BA_0   1mtc_BA_0   3gtu_AB_0   3gtu_CD_0   1hnc_BA_0   1xw5_AB_0   1xw5_BA_0   2c4j_AB_0
      2c4j_BA_0   1ykc_AB_0   1ykc_BA_0   2ab6_AB_0   2ab6_BA_0   2ab6_DC_0   2ab6_CD_0   2c4j_CD_0   2c4j_DC_0   2gtu_AB_0
      2gtu_BA_0   3gtu_BA_0   3gtu_DC_0   1hnc_DC_0   1hnc_CD_0   5fwg_AB_0   3fyg_AB_0   3fyg_BA_0   2dc5_AB_0   2dc5_BA_0
      1hnc_AB_0   1dug_AB_0   1dug_BA_0   1y6e_AB_0   1y6e_BA_0   2fhe_AB_0   2fhe_BA_0

Peptides

PartnerDomains
      GST_N (1axd_AB_0)
      Tom37 (1v2a_AB_0)

Dist Members Intf   Alignment
      1pgt_BA_0     R     Y       Q       Q     A       A     L       D       M     V       D     G       D       P     F     L
      1glp_AB_0     R     Y       Q       R     A       A     Q       D       M     V       D     G       D       P     F     L
      2gsr_AB_0     R     Y       Q       K     A       A     L       D       M     V       D     G       D       P     F     L
      1tu7_AB_0     R             E       M     T       T             D       M     F       E     G       D       K     F     L
      1tu8_DC_0     R             E       M     T       T     Y       D       M     F       E     G       D             F
      2aaw_AC_0     R             E       L     E       F     Y       D       M     I       C     G       D       Y     F     L
      1b48_AB_0                   L       K             V     R       D       M     Y       D     G       D       V     F
      1b48_BA_0                   L       K     R       V             D       M     Y       D     G       D       V     F
      1ev4_CD_0     N     Y       M       K     R       A     L       D       M     Y       E     G       D       A     F     V
      1gsd_AB_0     N     Y       I       K     R       A             D       M     Y       E     G       D       A     F     V
      1gsd_DC_0     N     Y       I       K     R       A     L       D       M     Y       E     G       D       A     F     V
      2vct_EF_0     N     Y       I       K     K       A             D       M     Y       E     G       D       A     F     V
      2wju_AB_0     N     Y       I       K     K       A     L       D       M     Y       E     G       D       A     F     V
      1vf2_AB_0           Y       L       K     R       A     L       D       M     Y       G     G       D       A     Y
      1vf3_AB_0     N     Y       L       K     R       A     L       D       M     Y       G     G       D       A     Y     V
      1gul_AB_0     H             L       K     R       T             D       M     Y       E     G       D
      1g6w_AB_0     L             L       A     Q       S     Q       N       A     W       F     F
      1jzr_DC_0     L             L       A     Q       S     Q       N       A     W       F     F               V
      3c8e_AB_0     L             L       A     R       T     E       M       N     W       F     W       G                   Q
      3c8e_BA_0     L             L       A             T     E       M       N     W       F     W       G       V
      1oe7_AB_0     R             E       E     Y       Y             E       K             G     Q       D
      2jl4_AB_0                   A       D     R       Q             R       A             A     I       D       A           L
      2v6k_AB_0                   A       D     R       Q     R       R       A             A     I       D       A           L
      1a0f_AB_0     Q                     I     R       Y     K       I       E             N     Y       T
      2pmt_AB_0                           L             Y     H       I       E             N     F       S
      1f2e_AB_0                           L             Y     R       L       S             S     F
      1f2e_BA_0                           L             Y     R       L       S     R       S     F
      2dsa_AB_0                           F             Y     H       Q       Q             N     F       S
      1axd_AB_0                   L       E     A       A     M       D       V     W       E
      1axd_BA_0                   L       E     A       A     M       D       V     W       E     V       N
      1gnw_AB_0                   I       S             A             A       I             Q     V       H
      1jlv_AB_0               P    Q    R    A    V    N    Q    R    Y     F           F           F
      1jlw_AB_0               P    R    R    A    V    H    Q    R    F     F           F           F
      1v2a_AB_0               P    K    R    S    V    N    Q    R    F     F           L           F
      2c3n_AB_0         Y     L    Q    R    A    R    D    E         A     W
      2cz3_AB_0               P    Q    R    A         R              D     L
      2cz3_BA_0               P    Q    R    A         R              D     L           A           I
      1iyh_AC_0   R           E    M    Q    C    H    D    A    I    D     T     D     D     L     Y
      1pd2_12_0   R           E    L    Q    C    Q    D    A    V    D     T     D     D     L     Y
      1tw9_AB_0   R           P    F         A    L    D    S    L    D     A     D     F           F
      1tw9_CD_0   R           P    F         A    L    D    S    L    D     A     D     F     I     F
      2on5_AG_0   R           P    F    E    A    L    D    S    V    D     Q     D     F     M     F
      2on7_AD_0   R           T    F    E    A    V    D    S    L    D     Q     D     F           F
      1zl9_AB_0   R     N     A    W    E    A    Q    N    S    L    D     Q     D     F           F
      1yq1_AB_0   R           P    E    E    A    W    D    A    V    D     L           I           L
      1yq1_BA_0   R           P    E    E    A    W    D    A    V    D     L     D     I           L
      2hnl_AB_0   L           D    W    E    A    K    M    A    V    L     N     E     R     Y     F
      1m0u_AB_0   R           P    W    D    L    Q    D    I         D     T     D
      2il3_AB_0               P    V    Q    A         N    S         H     F
      2imi_AB_0               P    V    Q    A         N    S         H     F           T
      1c72_AB_0               E         K    Q         D    V    L    N     H     D           L     F
      1gsu_BA_0   R           E         K    Q    R    D    V    L    N     H     D     Q     L     F
      1gtu_AB_0                         K              D    I    L    N     Q     D           Y     F
      1gtu_BA_0               E         K    I    R    D    I    L    N     Q     D           Y     F
      1xw6_DC_0               E         K    I    R    D    I    L    N     Q     D     L     Y     F
      1mtc_AB_0               E         R    I         D    I         N     Q     D     L     Y     F
      2gst_AB_0               E         R    I         D    I    V    N     Q     D     L     Y     F
      3gtu_AB_0               E         K    I         D    I    I    N     Q     D           F     F
      1hnc_BA_0               E         Q    I         D    I    L    N     Q     D     L     Y     F
      2c4j_CD_0               E    K    Q    I    R    D    I    L    N     Q     D           Y     F
      2c4j_DC_0               E    K    Q    I    R    D    I    L    N     Q     D     L     Y     F
      3fyg_AB_0               E         R    I    R    D    I    V    N     Q     D     L           F
      2dc5_AB_0   R           E    E    R    I    R    D    I    L    N     Q     D     L     Y     F
      1dug_AB_0   R           P    K    R    A    E    S    M    L    G     A     D     M     F     R
      2fhe_AB_0               S    E    R    A    R    S    M    I    G     A     D

Dist Members ResidueID Alignment
      1pgt_BA_0   70    79    83   84   86   87   88   90   91   92   94    95    98    128   129   132
      1glp_AB_0   70    79    83   84   86   87   88   90   91   92   94    95    98    128   129   132
      2gsr_AB_0   68    77    81   82   84   85   86   88   89   90   92    93    96    126   127   130
      1tu7_AB_0   68          81   82   84   85        88   89   90   92    93    96    127   128   131
      1tu8_DC_0   68          81   82   84   85   86   88   89   90   92    93    96          128
      2aaw_AC_0   77          90   91   93   94   95   97   98   99   101   102   105   134   135   138
      1b48_AB_0               86   87        90   91   93   94   95   97    98    101   135   136
      1b48_BA_0               86   87   89   90        93   94   95   97    98    101   135   136
      1ev4_CD_0   73    82    86   87   89   90   91   93   94   95   97    98    101   135   136   139
1gsd_AB_0   73     82     86     87     89     90            93     94     95     97     98     101    135    136    139
1gsd_DC_0   73     82     86     87     89     90     91     93     94     95     97     98     101    135    136    139
2vct_EF_0   73     82     86     87     89     90            93     94     95     97     98     101    135    136    139
2wju_AB_0   73     82     86     87     89     90     91     93     94     95     97     98     101    135    136    139
1vf2_AB_0          1082   1086   1087   1089   1090   1091   1093   1094   1095   1097   1098   1101   1135   1136
1vf3_AB_0   1073   1082   1086   1087   1089   1090   1091   1093   1094   1095   1097   1098   1101   1135   1136   1139
1gul_AB_0   73            86     87     89     90            93     94     95     97     98     101
1g6w_AB_0   186           206    207    209    210    211    213    214    215    217    218
1jzr_DC_0   186           206    207    209    210    211    213    214    215    217    218           258
3c8e_AB_0   123           137    138    140    141    142    144    145    146    148    149    152                  193
3c8e_BA_0   123           137    138           141    142    144    145    146    148    149    152    189
1oe7_AB_0   76            89     90     92     93            96     97            100    101    104
2jl4_AB_0                 86     87     89     90            93     94            97     98     102    140           144
2v6k_AB_0                 86     87     89     90     91     93     94            97     98     102    140           144
1a0f_AB_0   71                   89     91     92     93     95     96            99     100    103
2pmt_AB_0                        89            92     93     95     96            99     100    103
1f2e_AB_0                        89            92     93     95     96            99     100
1f2e_BA_0                        89            92     93     95     96     97     99     100
2dsa_AB_0                        89            92     93     95     96            99     100    103
1axd_AB_0                 87     88     92     93     94     96     97     98     100
1axd_BA_0                 89     90     92     93     94     96     97     98     100    101    104
1gnw_AB_0                 93     94            97            100    101           104    105    108
1jlv_AB_0                 87     88     90     91     92     94     95     96     98     99            136           140
1jlw_AB_0                 93     94     96     97     98     100    101    102    104    105           144           148
1v2a_AB_0                 86     87     89     90     91     93     94     95     97     98            134           138
2c3n_AB_0          85     89     90     92     93     94     96     97            100    101
2cz3_AB_0                 93     94     96     97            100                  104    105
2cz3_BA_0                 93     94     96     97            100                  104    105           141           145
1iyh_AC_0   469           482    483    485    486    487    489    490    491    493    494    497    530    531    534
1pd2_12_0   69            82     83     85     86     87     89     90     91     93     94     97     130    131    134
1tw9_AB_0   69            82     83            86     87     89     90     91     93     94     97     135           139
1tw9_CD_0   69            82     83            86     87     89     90     91     93     94     97     135    136    139
2on5_AG_0   69            82     83     85     86     87     89     90     91     93     94     97     135    136    139
2on7_AD_0   69            82     83     85     86     87     89     90     91     93     94     97     135           139
1zl9_AB_0   71     80     84     85     87     88     89     91     92     93     95     96     99     137           141
1yq1_AB_0   70            83     84     86     87     88     90     91     92     94     95            137           141
1yq1_BA_0   70            83     84     86     87     88     90     91     92     94     95     98     137           141
2hnl_AB_0   93            106    107    109    110    111    113    114    115    117    118    121    156    157    160
1m0u_AB_0   115           128    129    131    132    133    135    136           139    140    143
2il3_AB_0                 90     91     93     94            97     98            101    102
2imi_AB_0                 90     91     93     94            97     98            101    102           144
1c72_AB_0                 90            93     94            97     98     99     101    102    105           137    140
1gsu_BA_0   77            90            93     94     95     97     98     99     101    102    105    136    137    140
1gtu_AB_0                               93                   97     98     99     101    102    105           137    140
1gtu_BA_0                 90            93     94     95     97     98     99     101    102    105           137    140
      1xw6_DC_0               90          93    94    95    97    98    99      101   102   105   136   137   140
      1mtc_AB_0               90          93    94          97    98            101   102   105   136   137   140
      2gst_AB_0               90          93    94          97    98    99      101   102   105   136   137   140
      3gtu_AB_0               94          97    98          101   102   103     105   106   109         141   144
      1hnc_BA_0               90          93    94          97    98    99      101   102   105   136   137   140
      2c4j_CD_0               91    92    94    95    96    98    99    100     102   103   106         138   141
      2c4j_DC_0               91    92    94    95    96    98    99    100     102   103   106   137   138   141
      3fyg_AB_0               90          93    94    95    97    98    99      101   102   105   136         140
      2dc5_AB_0   85          98    99    101   102   103   105   106   107     109   110   113   144   145   148
      1dug_AB_0   72          85    86    88    89    90    92    93    94      96    97    100   131   132   135
      2fhe_AB_0               85    86    88    89    90    92    93    94      96    97    100

Alignment Occupancy     0.507 0.184 0.907 0.846 0.861 0.984 0.723 1     0.969 0.769 1       0.984 0.784 0.646 0.507
      0.646
Gap in betw Columns     12,19 0     1     0     0     1     0     0     1       0     2,3   19,37 0     2

SLIM RegEx
      [EPLIAQSTMD][KEFQLAWMVDRSI].[RQKEATDY][AIYTQSVCFL][RLQVEHWKYM].[DNRMSILAEHQ][MISAVQENK][LYVWRIF].[DNEFGASHYQC
L][GQFALTWVHINY].{2,3}[DSGHTNE]
SLIM Coverage           1
SLIM PSSM Match Cutoff 35.0988421985378
SLIM I=181997 Im=6102 Id=342 Idm=25
SLIM PSSM p-value 0.000159926060097361

PSSM Listing
Pos 0 P(5.465) E(3.730) L(2.380) Q(2.206) D(2.134) I(1.732) M(1.385) V(1.381)   A(1.054) T(0.636) S(0.382) K(0.044)
N(-0.62) R(-0.70) H(-0.91) F(-1.17) G(-1.67) Y(-1.72) C(-1.72) W(-2.77)
Gap (0)
Pos 1 W(7.924) K(3.557) F(3.444) E(2.861) D(2.595) Q(2.569) M(2.061) R(1.895)   L(1.588) A(1.298) V(1.207) I(0.823)
Y(0.712) S(0.412) T(-0.47) N(-0.49) H(-0.98) P(-1.54) C(-1.79) G(-1.80)
Gap (1)
Pos 2 R(3.988) Q(3.123) K(3.073) E(2.883) Y(2.834) D(1.991) A(1.499) T(0.811)   N(-0.19) S(-0.21) H(-0.21) M(-0.98)
F(-1.02) P(-1.19) G(-1.32) W(-1.78) L(-2.06) C(-2.08) I(-2.59) V(-2.67)
Gap (0)
Pos 3 C(5.521) Y(4.622) A(3.239) Q(2.248) I(2.238) F(2.119) T(1.528) S(1.410)   V(0.934) L(0.839) M(-0.04) H(-0.08)
W(-0.25) E(-0.25) G(-0.30) K(-0.71) N(-0.77) P(-0.82) R(-0.89) D(-0.92)
Gap (0)
Pos 4 W(7.518) H(4.928) Y(3.540) R(3.410) Q(2.693) L(2.181) E(2.065) V(1.871)   K(1.869) M(1.805) I(0.912) F(-0.05)
D(-0.49) N(-0.66) T(-1.09) S(-1.18) A(-1.28) C(-2.13) P(-2.13) G(-2.66)
Gap (1)
Pos 5 D(5.541) H(3.834) N(3.815) R(2.244) E(1.986) M(1.983) Q(1.225) S(1.004)   L(0.827) I(0.734) T(0.695) A(0.094)
K(-0.05) V(-0.27) G(-0.90) P(-1.22) Y(-1.50) F(-1.82) C(-2.22) W(-3.06)
Gap (0)
Pos 6 M(3.737) N(2.566) I(2.563) Q(2.305) S(2.113) A(2.106) E(2.031) V(1.384)   L(1.328) K(1.070) T(-0.33) D(-0.39)
R(-0.55) F(-0.60) C(-0.93) G(-1.06) Y(-1.30) H(-1.40) P(-1.57) W(-1.96)
Gap (0)
Pos 7 W(8.617) Y(5.136) F(2.778) V(2.562) L(2.544) R(2.219) I(2.096) M(0.841) H(0.217) K(-0.62) A(-1.17) Q(-1.23)
C(-1.61) E(-2.09) S(-2.20) T(-2.20) N(-2.23) P(-2.94) G(-3.15) D(-3.38)
Gap (1)
Pos 8 C(4.826) D(4.677) N(4.609) H(4.524) F(3.627) G(3.449) E(3.227) Y(2.946) Q(1.393) S(1.103) A(1.047) T(0.398)
L(-0.00) K(-0.12) R(-0.58) V(-0.73) W(-0.90) M(-1.09) I(-1.29) P(-1.43)
Gap (0)
Pos 9 W(7.924) G(4.600) H(4.524) F(4.232) Q(3.538) Y(3.044) N(1.893) L(1.365) A(1.336) T(1.262) V(1.213) I(1.090)
E(0.628) M(0.097) S(-0.14) K(-0.24) R(-0.26) D(-0.51) P(-1.25) C(-1.70)
Gap (2,3)
Pos 10 D(5.587) H(3.832) G(2.545) N(2.099) E(1.981) T(1.047) S(0.907) Q(-0.15) K(-1.03) P(-1.16) A(-1.51) Y(-1.84)
R(-1.85) V(-2.60) M(-2.85) C(-2.93) F(-3.03) I(-3.16) W(-3.83) L(-3.85)
//

===============================
 SLIM 135
===============================
ID           GTP_EFTU.clust.0.15.2
Center             2qrz_BA_0
AvSimToCtr 0.377
AvRMSDToCtr 2.620 A
Size         7
NumDistinct 5
FracDDI            0.6
FracPeptides       0
FracIntra    0
Species            ESCHERICHIA COLI (4), HOMO SAPIENS (1)
Conservation       0.8

Members
      1a4r_AB_0 1a4r_BA_0 2qrz_AB_0 1dg1_GH_0 1dg1_HG_0 1efc_AB_0 1efc_BA_0

Peptides

PartnerDomains
      GTP_EFTU (2qrz_BA_0,1dg1_GH_0,1dg1_HG_0)
      Ras (2qrz_BA_0)

Dist Members Intf   Alignment
      2qrz_BA_0     V     M     I   G     G      E    K     N     D     E     I     L     A     L     P     R
      1dg1_GH_0     K     T     Y   P                 A     E           A     L           E     G     S
      1dg1_HG_0     T           Y   P                 A     E     A           L           E     G     S
      1efc_AB_0     T           Y   P                 A     E           A     L     E           G     S
      1efc_BA_0           T     Y   P                 A     E     A           L     E           G     S
Dist Members ResidueID Alignment
      2qrz_BA_0   44    45    46      47     48    49    166   167   170   171   173   174   175   177   179   186
      1dg1_GH_0   37    38    39      72                 182   183         186   189         190   193   197
      1dg1_HG_0   38          39      72                 182   183   186         189         190   193   197
      1efc_AB_0   38          39      72                 182   183         186   189   190         193   197
      1efc_BA_0         38    39      72                 182   183   186         189   190         193   197

Alignment Occupancy       0.8   0.6   1      1     0.2   0.2   1     1     0.6   0.6   1     0.6   0.6   1     1
      0.2
Gap in betw Columns       0     0     0,32   109,118     0     2     0     1,2   0     0     1,2   1,3

SLIM   RegEx        [AK][EN]..[AD][AE].{1,2}[LI][EL][EA].{1,2}[GL].{1,3}[SP]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 25.656529641373
SLIM   I=181997 Im=6923 Id=673 Idm=25
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 A(3.778) K(3.400) S(0.864) R(0.572) E(-0.17) Q(-0.17) G(-0.18) C(-0.21) T(-0.70) N(-0.70) P(-1) M(-1) L(-1.13)
I(-1.18) D(-1.70) H(-1.70) Y(-2) V(-2.13) F(-2.13) W(-3)
Gap (0)
Pos 1 E(4.778) N(4.400) D(1.864) Q(1.810) K(0.864) S(0.295) T(0) R(0) H(-0.13) P(-1.13) A(-1.13) G(-1.17) M(-2) Y(-
2) I(-3) L(-3) V(-3) F(-3) W(-3.13) C(-3.70)
Gap (2)
Pos 2 D(4.391) A(3.084) E(0.485) S(0.252) T(-0.36) N(-0.36) G(-0.74) C(-0.89) Q(-1.05) P(-1.51) K(-1.51) R(-1.74)
M(-1.85) I(-1.85) L(-1.89) H(-2.05) V(-2.74) F(-2.74) Y(-2.74) W(-3.74)
Gap (0)
Pos 3 E(3.395) A(3.087) Q(0.485) D(0.426) S(0.252) K(-0.36) G(-0.85) C(-0.90) T(-1.05) N(-1.05) R(-1.05) H(-1.36)
P(-1.51) M(-1.74) I(-1.85) L(-1.85) Y(-2.51) V(-2.74) F(-2.74) W(-3.51)
Gap (1,2)
Pos 4 L(3.810) I(2.823) V(2.810) M(1.864) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2.13) R(-2.13) K(-2.13) W(-2.13)
P(-3) N(-3) E(-3) H(-3) D(-3.70) G(-4)
Gap (0)
Pos 5 E(4.083) L(2.392) V(1.395) Q(1.092) D(1.084) M(0.426) I(0.403) K(0.108) S(-0.85) T(-0.85) R(-0.85) N(-0.89)
H(-0.89) A(-1.51) F(-1.51) P(-1.85) Y(-2.05) C(-2.51) G(-2.85) W(-3.05)
Gap (0)
Pos 6 E(4.084) A(2.403) Q(1.108) D(1.092) K(0.149) S(-0.05) T(-0.74) N(-0.74) R(-0.74) H(-0.85) G(-1.36) P(-1.51)
C(-1.57) M(-2.05) I(-2.36) L(-2.36) Y(-2.51) V(-3.05) F(-3.05) W(-3.51)
Gap (1,2)
Pos 7 G(5.776) L(2.391) V(1.572) T(0.789) M(0.417) I(0.400) A(-0.13) S(-0.18) D(-1.21) F(-1.42) Q(-2) R(-2) K(-2)
W(-2) P(-2.13) N(-2.13) E(-2.13) H(-2.13) C(-2.17) Y(-2.17)
Gap (1,3)
Pos 8 P(5.391) S(3.778) T(1) A(0.810) N(0.810) D(-0.13) E(-0.13) Q(-0.13) K(-0.13) G(-0.18) H(-1.13) R(-1.13) M(-
1.13) C(-1.18) V(-2) I(-2.13) L(-2.13) Y(-2.13) F(-2.18) W(-3.13)
//
===============================
 SLIM 136
===============================
ID           GTP_EFTU.clust.0.15.4
Center             1nf3_AC_0
AvSimToCtr 0.376
AvRMSDToCtr 1.320 A
Size         6
NumDistinct 6
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (3), RATTUS NORVEGICUS (1), MUS MUSCULUS (1)
Conservation       0.6

Members
      1cee_AB_0 1nf3_BD_0 2odb_AB_0 2ov2_HP_0 1e0a_AB_0 2p2l_CA_0

Peptides

PartnerDomains
      PBD (2odb_AB_0,2ov2_HP_0)
      Arf (2p2l_CA_0)

Dist Members Intf Alignment
      1nf3_AC_0   I     V     I     S     M     P     Q     D       F     R     P     V     S     S     I     V     D
      R     Q     S     T     G     L
      1cee_AB_0               I     G     A     P     S     G       F     K     H     V     S
      2odb_AB_0               I     S     A     P     Q     N       F     Q     H     R
      2ov2_HP_0         E     I     S     A     P     S     N       F     E     H     R
      1e0a_AB_0         S     I     S     L     P     S     D       F     E     H     T     I     V     G     F
            Q
      2p2l_CA_0                                                           I     P     T     V

Dist Members ResidueID Alignment
      1nf3_AC_0   131   132   133   134   135   136   137   138     139   140   141   142   143   144   145   148
      149   156   204   205   206   207   208
      1cee_AB_0               9     10    11    12    13    14      15    16    17    18    19
      2odb_AB_0               12    13    14    15    16    17      18    19    20    21
      2ov2_HP_0         10    11    12    13    14    15    16      17    18    19    20
      1e0a_AB_0         74    75    76    77    78    79    80      81    82    83    84    85    87    88    89
            102
      2p2l_CA_0                                                           33    34    35    36
Alignment Occupancy     0.166 0.5   0.833 0.833 0.833 0.833 0.833 0.833 0.833 1    1     1     0.666 0.333 0.333
      0.333 0.166 0.166 0.333 0.166 0.166 0.166 0.166
Gap in betw Columns     0     0     0     0     0     0     0     0     0     0    0

SLIM   RegEx        [SEV]I[SG][AML]P[SQ][NDG]F[EQIKR][HP][TRV][SIV]
SLIM   Coverage           0.666666666666667
SLIM   PSSM Match Cutoff 24.5842304245387
SLIM   I=181997 Im=5932 Id=673 Idm=23
SLIM   PSSM p-value 0.0823014043479666

PSSM Listing
Pos 0 E(3.215) S(2.228) V(2.211) I(1.217) Q(0.351) D(0.341) A(-0.38) T(-0.44) K(-0.44) N(-0.46) M(-0.62) L(-0.72)
H(-1.44) R(-1.44) G(-1.62) P(-1.92) C(-2.07) Y(-2.24) F(-2.38) W(-3.69)
Gap (0)
Pos 1 I(3.817) L(1.817) M(0.817) V(0.817) F(-0.18) C(-1.18) A(-1.18) Y(-1.18) S(-2.18) T(-2.18) P(-3.18) N(-3.18)
D(-3.18) E(-3.18) Q(-3.18) H(-3.18) R(-3.18) K(-3.18) W(-3.18) G(-4.18)
Gap (0)
Pos 2 G(4.218) S(3.599) T(0.817) A(0.682) N(0.606) D(-0.31) E(-0.37) Q(-0.37) K(-0.37) P(-1.31) H(-1.31) R(-1.31)
V(-1.35) C(-1.37) M(-1.37) F(-2.31) Y(-2.31) I(-2.37) L(-2.37) W(-2.88)
Gap (0)
Pos 3 A(3.311) M(3.263) L(2.352) V(1.234) I(0.625) S(0.366) C(-0.47) G(-0.67) F(-0.91) Q(-0.98) T(-1.31) R(-1.31)
K(-1.31) P(-1.53) N(-1.53) E(-1.53) Y(-1.65) W(-2.21) H(-2.31) D(-2.53)
Gap (0)
Pos 4 P(6.817) T(0.817) S(-1.18) A(-1.18) N(-1.18) D(-1.18) E(-1.18) Q(-1.18) K(-1.18) G(-2.18) H(-2.18) R(-2.18)
M(-2.18) V(-2.18) C(-3.18) I(-3.18) L(-3.18) Y(-3.18) F(-4.18) W(-4.18)
Gap (0)
Pos 5 Q(3.911) S(3.318) E(1.086) T(0.526) N(0.526) A(0.393) K(0.340) R(0.086) D(-0.18) G(-0.60) H(-0.65) M(-0.65)
P(-1.18) C(-1.60) Y(-1.65) L(-2.18) V(-2.18) I(-2.47) F(-2.47) W(-2.65)
Gap (0)
Pos 6 D(4.908) N(4.908) G(4.214) E(1.036) T(0.526) S(0.340) Q(-0.37) K(-0.73) R(-0.91) H(-1.31) A(-1.35) V(-1.61)
P(-1.65) M(-2.65) Y(-2.65) C(-3.18) F(-3.18) I(-3.31) W(-3.35) L(-3.65)
Gap (0)
Pos 7 F(5.817) Y(2.817) W(0.817) M(-0.18) I(-0.18) L(-0.18) H(-1.18) V(-1.18) C(-2.18) S(-2.18) T(-2.18) A(-2.18)
G(-3.18) N(-3.18) D(-3.18) E(-3.18) Q(-3.18) R(-3.18) K(-3.18) P(-4.18)
Gap (0)
Pos 8 E(3.938) Q(3.336) K(3.308) R(3.286) I(2.212) D(1.001) L(0.274) N(-0.17) M(-0.23) S(-0.28) T(-0.28) H(-0.30)
V(-0.67) A(-1) P(-1.28) Y(-1.54) F(-1.56) G(-2.15) C(-2.38) W(-2.74)
Gap (0)
Pos 9 H(7.594) P(5.901) Y(1.597) N(0.660) D(0.660) T(0.452) E(-0.23) Q(-0.23) R(-0.33) S(-1) K(-1) F(-1.38) A(-1.54)
G(-2) M(-2) V(-2) W(-2.33) C(-3) I(-3) L(-3)
Gap (0)
Pos 10 R(3.904) T(2.910) V(2.904) I(1.910) K(1.044) Q(0.250) M(0.140) S(0.071) P(-0.00) L(-0.00) G(-0.03) D(-0.03)
E(-0.33) N(-0.38) H(-0.38) A(-0.54) C(-1.33) Y(-1.54) F(-1.69) W(-3)
Gap (0)
Pos 11 S(2.903) I(2.525) V(2.261) L(0.547) A(0.125) M(0.028) T(-0.05) N(-0.08) E(-1.01) Q(-1.01) K(-1.01) D(-1.05)
G(-1.06) F(-1.29) C(-1.40) Y(-1.78) P(-1.87) H(-1.97) R(-1.97) W(-3.40)
//

===============================
 SLIM 137
===============================
ID           GTP_EFTU.clust.0.2.5
Center             2qn6_AC_0
AvSimToCtr 0.372
AvRMSDToCtr 1.112 A
Size         5
NumDistinct 6
FracDDI            0
FracPeptides       0.166666666666667
FracIntra    0
Species            SULFOLOBUS SOLFATARICUS (4), SULFOLOBUS SOLFATARICUS P2 (1), PYROCOCCUS FURIOSUS (1)
Conservation       0.666666666666667

Members
      2d74_AB_0 3cw2_BL_0 3cw2_EM_0 3cw2_FN_0 3cw2_AK_0

Peptides
      2qn6-C

PartnerDomains

Dist Members Intf   Alignment
      2qn6_AC_0     S     S     E     Y     V     M     L    D    R     L     Y     K     L     P
      2d74_AB_0                       Y     E     L     L         K     A     Y           L     P
      3cw2_BL_0                       Y           M     L         R     L     Y     K     L
      3cw2_EM_0     S                 Y           M     L         R     L     Y     K     L
      3cw2_FN_0     S                             M     L    D          L     Y     K     L
      3cw2_AK_0           E     K     Y           M     L    D    R     L     Y     K     L     K

Dist Members ResidueID Alignment
      2qn6_AC_0   2     3     4       7     8     10    11   12   13    14    15    17    18    19
      2d74_AB_0                       8     9     11    12        14    15    16          19    20
      3cw2_BL_0                       7           10    11        13    14    15    17    18
      3cw2_EM_0   3                   7           10    11        13    14    15    17    18
      3cw2_FN_0   3                               10    11   12         14    15    17    18
      3cw2_AK_0         4     5       7           10    11   12   13    14    15    17    18    21

Alignment Occupancy       0.5   0.333 0.333 0.833 0.333 1    1    0.5   0.833 1     1     0.833 1         0.5
Gap in betw Columns       3,4   2     0     0     0     0    0    1     0     0,2
SLIM   RegEx        S.{3,4}Y..[ML]LD[RK][LA]Y.KL.{0,2}[PK]
SLIM   Coverage           0.666666666666667
SLIM   PSSM Match Cutoff 24.0827160516213
SLIM   I=181997 Im=4160 Id=673 Idm=13
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 S(3.306) T(0.306) A(0.306) N(0.306) G(-0.69) D(-0.69) E(-0.69) Q(-0.69) K(-0.69) C(-1.69) P(-1.69) H(-1.69)
R(-1.69) M(-1.69) I(-2.69) L(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
Gap (3,4)
Pos 1 Y(6.817) F(2.817) H(1.817) W(1.817) Q(-1.18) M(-1.18) I(-1.18) L(-1.18) V(-1.18) C(-2.18) S(-2.18) T(-2.18)
A(-2.18) N(-2.18) E(-2.18) R(-2.18) K(-2.18) P(-3.18) G(-3.18) D(-3.18)
Gap (2)
Pos 2 M(4.827) L(2.725) I(1.251) V(1.241) F(0) Q(-0.15) C(-1) A(-1) Y(-1) S(-1.11) T(-1.11) R(-1.11) K(-1.11) W(-
1.11) P(-2.11) N(-2.11) E(-2.11) H(-2.11) G(-3.11) D(-3.11)
Gap (0)
Pos 3 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 4 D(5.306) E(1.306) T(0.306) N(0.306) S(-0.69) Q(-0.69) P(-1.69) G(-1.69) H(-1.69) K(-1.69) A(-2.69) R(-2.69)
C(-3.69) M(-3.69) I(-3.69) V(-3.69) F(-3.69) Y(-3.69) L(-4.69) W(-4.69)
Gap (0)
Pos 5 R(4.606) K(3.389) Q(0.817) E(0.113) N(-0.18) H(-0.31) S(-0.88) T(-0.88) A(-1.18) M(-1.18) P(-1.88) D(-1.88)
G(-2.18) L(-2.18) Y(-2.18) C(-3.18) I(-3.18) V(-3.18) F(-3.18) W(-3.18)
Gap (0)
Pos 6 L(3.819) V(2.819) A(2.241) M(1.827) I(1.827) F(-0.15) S(-0.56) C(-0.74) Y(-1.11) G(-1.70) T(-1.74) Q(-1.74)
R(-1.74) K(-1.74) W(-2.11) P(-2.27) N(-2.27) E(-2.27) H(-2.74) D(-3.27)
Gap (0)
Pos 7 Y(7) F(3) H(2) W(2) Q(-1) M(-1) I(-1) L(-1) V(-1) C(-2) S(-2) T(-2) A(-2) N(-2) E(-2) R(-2) K(-2) P(-3) G(-3)
D(-3)
Gap (1)
Pos 8 K(4.817) R(1.817) E(0.817) Q(0.817) S(-0.18) T(-0.18) N(-0.18) P(-1.18) A(-1.18) D(-1.18) H(-1.18) M(-1.18)
G(-2.18) L(-2.18) Y(-2.18) C(-3.18) I(-3.18) V(-3.18) F(-3.18) W(-3.18)
Gap (0)
Pos 9 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0,2)
Pos 10 P(5.901) K(3.213) R(0.244) T(0.070) E(-0.55) Q(-0.55) S(-1.24) N(-1.24) A(-1.69) D(-1.69) H(-2.24) M(-2.24)
G(-2.69) V(-2.92) L(-3.24) Y(-3.24) C(-3.69) I(-3.69) F(-4.24) W(-4.24)
//

===============================
 SLIM 138
===============================
ID           Gal-bind_lectin.clust.0.15.0
Center             1w6m_BA_0
AvSimToCtr 0.458
AvRMSDToCtr 1.017 A
Size         41
NumDistinct 16
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (5), MUS MUSCULUS (4), GALLUS GALLUS (3), BUFO ARENARUM (2)
Conservation       0.357142857142857

Members
      1a78_AB_0   1gan_AB_0   1a78_BA_0   1gan_BA_0   1gzw_BA_0   2zkn_BA_0   1w6n_BA_0   1w6o_BA_0   1w6p_BA_0   1gzw_AB_0
      2zkn_AB_0   1w6m_AB_0   1w6n_AB_0   1w6o_AB_0   1w6p_AB_0   1w6q_AB_0   1w6q_BA_0   1qmj_AB_0   1qmj_BA_0   1sla_AB_0
      1slb_BA_0   1slb_CD_0   1slc_AB_0   1slc_CD_0   1slt_AB_0   1sla_BA_0   1slb_AB_0   1slb_DC_0   1slc_BA_0   1slc_DC_0
      1slt_BA_0   1hlc_AB_0   1hlc_BA_0   3dui_AB_0   3dui_BA_0   2d6k_AB_0   2d6p_AB_0   2d6p_BA_0   2d6k_BA_0   2d6n_AB_0
      2d6n_BA_0

Peptides

PartnerDomains
      Gal-bind_lectin (1w6q_AB_0,1qmj_AB_0,1sla_AB_0,1sla_BA_0,1hlc_AB_0,1hlc_BA_0,3dui_AB_0,3dui_BA_0)

Dist Members Intf Alignment
      1w6m_BA_0   A     S         G       L     V       A     S       N       L     E       K     I       K       C     V     A   F
      D
      1a78_AB_0                   G       V     A       V     T       N       L                   F       K       S     I     T   T
      1gan_AB_0                   G       V     A       V     T       N       L                   F       K       S     I     T   T
      E
      2zkn_BA_0                   G       L     V       A     S       N       L             K     I       K       S     V     A   F
      1w6q_AB_0         C         G       L     V       A     S       N       L                   I       K       C     V     A   F
      1qmj_AB_0                   G       L     V       V     T       Q       L                   V       K       A     I     K   F
      S
      1sla_AB_0                   G       L     V       A     S       N       L     E             I       K       C     V     A   F
      E
      1sla_BA_0         C         G       L     V       A     S       N       L             K     I       K       C     V     A   F
      1hlc_AB_0                                 E       V     K       N       M             N     M       S       S     F     K   L
      K
      1hlc_BA_0                           L     E       V     K       N       M                   M       S       S     F     K   L
      3dui_AB_0                   G       P     V       C     T       N       L             T     L       R       S     V     S   W
      3dui_BA_0         Q         G       P     V       C     T       N       L     Q             L       R       S     V     S   W
      E
      2d6k_AB_0         P                 E     R       K     M               Q                                               F
      2d6k_BA_0         P                 E     R       K     M       Q                                                       F
        2d6n_AB_0         P     E     E      R      K      M             Q                           E             Q
        2d6n_BA_0         P     E     E      R      K      M                                         E      Q

Dist Members ResidueID Alignment
      1w6m_BA_0   1001 1002 1003      1004   1005   1006   1007   1008   1009   1015   1127   1128   1129   1130   1131   1132
      1133 1134
      1a78_AB_0               4       5      6      7      8      9      10                   128    129    130    131    132
      133
      1gan_AB_0               4       5      6      7      8      9      10                   128    129    130    131    132
      133   134
      2zkn_BA_0               3       4      5      6      7      8      9             127    128    129    130    131    132
      133
      1w6q_AB_0         2002 2003     2004   2005   2006   2007   2008   2009                 2128   2129   2130   2131   2132
      2133
      1qmj_AB_0               3       4      5      6      7      8      9                    128    129    130    131    132
      133   134
      1sla_AB_0               3       4      5      6      7      8      9      15            128    129    130    131    132
      133   134
      1sla_BA_0         2     3       4      5      6      7      8      9             127    128    129    130    131    132
      133
      1hlc_AB_0                              6      7      8      9      10            124    125    126    127    128    129
      130   131
      1hlc_BA_0                       5      6      7      8      9      10                   125    126    127    128    129
      130
      3dui_AB_0               4       5      6      7      8      9      10            127    128    129    130    131    132
      133
      3dui_BA_0         3     4       5      6      7      8      9      10     16            128    129    130    131    132
      133   134
      2d6k_AB_0         83            85     86     87     88            89                                               117
      2d6k_BA_0         83            85     86     87     88     89                                                      117
      2d6n_AB_0         83    84      85     86     87     88            89                          108           120
      2d6n_BA_0         83    84      85     86     87     88                                        108    120

Alignment Occupancy    0.062 0.5      0.75   0.937 1       1      1      0.812 0.875 0.187 0.312 0.75       0.875 0.812 0.812
      0.875 0.75 0.375
Gap in betw Columns    0     0        0      0      0      0      0      114,118       0      0,11   0      0      0

SLIM   RegEx        [PCSQ][GE][LEPV][VRAE][AVKC][STMK][NQ][LQM]
SLIM   Coverage           0.8125
SLIM   PSSM Match Cutoff 23.7388482130913
SLIM   I=181997 Im=5474 Id=40 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 C(6.920) P(5.613) Q(2.244) S(1.284) T(-0.04) E(-0.48) A(-0.89) N(-1.10)   K(-1.10) R(-1.45) D(-1.49) M(-1.79)
H(-2.07) G(-2.19) V(-2.33) L(-2.58) I(-2.65) Y(-2.79) F(-3.40) W(-3.40)
Gap (0)
Pos 1 G(5.530) E(2.925) T(0.600) D(0.142) Q(0.008) S(-0.28) A(-0.39) V(-0.46)   K(-0.85) N(-1.56) H(-1.56) R(-1.56)
P(-2.03) W(-2.39) M(-3.03) Y(-3.03) F(-3.28) C(-3.39) I(-4.03) L(-4.03)
Gap (0)
Pos 2 P(4.921) E(3.615) L(3.188) V(2.749) I(1.751) M(1.287) Q(0.677) D(0.645)   K(-0.22) T(-0.40) F(-0.69) A(-0.85)
S(-0.98) R(-1.10) N(-1.12) H(-1.22) Y(-1.39) C(-1.52) W(-2.52) G(-2.73)
Gap (0)
Pos 3 R(3.618) V(3.308) E(2.939) I(2.313) A(2.009) K(0.833) Q(0.540) M(0.414)   L(0.368) D(-0.00) S(-0.47) N(-0.80)
H(-0.87) T(-1.10) C(-1.12) Y(-1.37) F(-1.51) G(-1.60) P(-1.64) W(-3)
Gap (0)
Pos 4 C(6.920) K(3.618) A(2.867) V(2.842) I(1.864) R(0.685) S(0.172) M(0.097)   L(0.043) Q(-0.17) E(-0.17) T(-0.79)
N(-0.94) G(-0.99) P(-1.36) Y(-1.57) F(-1.67) D(-1.85) H(-1.85) W(-2.80)
Gap (0)
Pos 5 M(3.621) K(2.958) S(2.897) T(2.897) L(0.667) N(0.278) R(0.219) D(0.199)   Q(0.194) G(0.175) A(0.097) P(0.043)
E(-0.00) I(-0.26) H(-0.67) F(-1.07) C(-1.11) Y(-1.64) W(-2.04) V(-2.08)
Gap (0)
Pos 6 N(5.625) Q(2.956) S(0.690) D(0.690) E(0.476) R(0.026) K(0.026) T(-0.20)   G(-0.35) H(-0.97) M(-1.52) P(-1.97)
A(-1.97) Y(-1.97) L(-2.97) V(-2.97) C(-3.20) I(-3.20) F(-3.20) W(-3.52)
Gap (0)
Pos 7 L(3.557) M(3.148) Q(2.931) V(2.532) I(1.602) E(-0.02) F(-0.27) R(-0.75)   K(-0.75) A(-1.13) Y(-1.13) C(-1.26)
S(-1.36) T(-1.36) N(-1.75) H(-1.75) W(-1.91) D(-1.94) P(-2.36) G(-3.36)
//

===============================
 SLIM 139
===============================
ID           GerE.clust.0.15.0
Center             1je8_BA_0
AvSimToCtr 0.488
AvRMSDToCtr 1.279 A
Size         33
NumDistinct 11
FracDDI            0.545454545454545
FracPeptides       0
FracIntra    0
Species            BACILLUS SUBTILIS (6), MYCOBACTERIUM TUBERCULOSIS (2), AGROBACTERIUM TUMEFACIENS (2), ESCHERICHIA
COLI (1)
Conservation       0.545454545454545

Members
      1fse_AB_0 1fse_BA_0 1fse_ED_0 1fse_DE_0 1fse_CF_0 1fse_FC_0 1h0m_AB_1 1h0m_CD_1 1h0m_BA_1 1h0m_DC_1
      1l3l_AC_1 1l3l_BD_1 1l3l_CA_1 1l3l_DB_1 1je8_AB_0 1je8_FE_0 1je8_EF_0 1zg1_AB_0 1zg1_FE_0 1zg1_BA_0
      1zg1_EF_0 1zg5_AB_0 1zg5_FE_0 1zg5_BA_0 1zg5_EF_0 1zlj_AB_0 1zlj_EF_0 1zlj_CD_0 1zlj_GH_0 1zlj_BA_0
        1zlj_FE_0 1zlj_DC_0 1zlj_HG_0

Peptides

PartnerDomains
      GerE (1je8_BA_0,1fse_ED_0,1fse_DE_0,1h0m_BA_1,1zlj_AB_0,1zlj_BA_0)

Dist Members Intf   Alignment
      1je8_BA_0     I     A     Q       G     S     R     V     E      A     V     H
      1fse_AB_0                                           S     Q      V     V
      1fse_BA_0     L     V     Q             K     R     S     Q      V     V
      1fse_ED_0                 V                   R     S     Q      V     V
      1fse_DE_0     L           V                   R     S     Q      V     V     L
      1fse_CF_0     L     V     D             Q     V     V     E
      1fse_FC_0     V                         Q     V     V     E      L     R
      1h0m_AB_1                               S     K     A     H      T     A     I
      1h0m_BA_1     I     A     V       G     S     K     A     H      T     A     I
      1zlj_AB_0     L     S             G     R     R     T     Q      A     V     T
      1zlj_BA_0     L     S     E       G     R     R     T     Q      A     V     T

Dist Members ResidueID Alignment
      1je8_BA_0   167   168   169       170   202   203   204   205    207   208   211
      1fse_AB_0                                           60    61     63    64
      1fse_BA_0   23    24    25              57    59    60    61     63    64
      1fse_ED_0               24                    59    60    61     63    64
      1fse_DE_0   23          24                    59    60    61     63    64    67
      1fse_CF_0   23    24    26              61    63    64    65
      1fse_FC_0   24                          61    63    64    65     67    68
      1h0m_AB_1                               220   221   222   223    225   226   229
      1h0m_BA_1   185   186   187       188   220   221   222   223    225   226   229
      1zlj_AB_0   161   162             164   196   197   198   199    201   202   205
      1zlj_BA_0   161   162   163       164   196   197   198   199    201   202   205

Alignment Occupancy       0.727 0.545 0.636 0.363 0.727 0.909 1        1     0.909 0.909 0.545
Gap in betw Columns       0     0,1   19,32 0,1   0     0     1        0     2

SLIM   RegEx        [SQRK].{0,1}[RKV][SVAT][QEH].[VATL][VAR]..[TIHL]
SLIM   Coverage           0.818181818181818
SLIM   PSSM Match Cutoff 20.6188497296519
SLIM   I=181997 Im=6859 Id=32 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 R(3.341) Q(3.332) K(2.747) S(2.723) E(0.715) N(0.178) T(0.077) A(-0.09) D(-0.66) H(-0.69) M(-0.96) G(-1.09)
P(-1.49) Y(-1.96) C(-2.09) L(-2.31) V(-2.58) I(-2.82) F(-2.82) W(-2.96)
Gap (0,1)
Pos 1 R(4.410) K(3.435) V(2.298) I(1.305) Q(0.693) E(0.062) M(-0.27) N(-0.30)               H(-0.47) L(-0.52) A(-0.79) S(-0.89)
T(-0.89) P(-1.79) Y(-1.79) D(-1.89) G(-2.23) C(-2.27) F(-2.27) W(-3.09)
Gap (0)
Pos 2 S(3.038) V(2.707) A(2.420) T(2.399) I(1.726) N(0.223) G(0.051) M(0.008)              D(-0.10) L(-0.12) P(-0.31) E(-0.43)
Q(-0.43) K(-0.43) C(-0.72) H(-1.03) R(-1.26) F(-1.61) Y(-1.61) W(-3)
Gap (0)
Pos 3 H(6.296) Q(4.420) E(3.799) D(1.116) K(0.828) R(0.661) Y(0.458) N(0.271)              T(0) S(-0.12) M(-0.49) P(-1.12) A(-
1.12) G(-2) V(-2.18) W(-2.18) F(-2.22) L(-2.33) I(-3) C(-3.18)
Gap (1)
Pos 4 V(3.079) A(2.731) T(2.311) I(2.091) L(1.804) M(0.602) S(0.260) G(-0.23)               P(-0.43) D(-0.59) C(-0.67) Q(-1.06)
K(-1.06) E(-1.09) N(-1.18) F(-1.25) H(-1.42) Y(-1.47) R(-1.62) W(-2.93)
Gap (0)
Pos 5 V(3.548) R(2.609) I(2.553) A(2.360) M(0.604) L(0.592) K(-0.19) S(-0.48)               C(-0.86) Q(-0.91) Y(-1.30) F(-1.33)
E(-1.41) G(-1.48) N(-1.66) T(-1.67) P(-1.79) H(-1.91) D(-2.67) W(-3.09)
Gap (2)
Pos 6 H(5.602) I(2.363) T(2.308) L(1.846) V(0.857) M(0.219) Y(-0.22) D(-0.28)               S(-0.57) P(-0.65) G(-0.67) N(-0.81)
F(-1.10) Q(-1.22) E(-1.25) K(-1.44) A(-1.71) R(-1.71) C(-1.76) W(-3.15)
//

===============================
 SLIM 140
===============================
ID           Globin.clust.0.15.1
Center             1xxt_DC_0
AvSimToCtr 0.600
AvRMSDToCtr 0.640 A
Size         994
NumDistinct 46
FracDDI            0
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (7), ONCORHYNCHUS MYKISS (3), MUSTELUS GRISEUS (2), ODOCOILEUS VIRGINIANUS (2),
TREMATOMUS BERNACCHII (2), GALLUS GALLUS (2), ANSER INDICUS (2), THUNNUS THYNNUS (2), DASYATIS AKAJEI (2), EQUUS
CABALLUS (2), PERCA FLAVESCENS (2), ALDABRACHELYS ELEPHANTINA (2), SUS SCROFA (2), LEIOSTOMUS XANTHURUS (2),
STRUTHIO CAMELUS (1), BRYCON CEPHALUS (1), MUS MUSCULUS (1), FELIS SILVESTRIS CATUS (1), CHRYSOCYON BRACHYURUS (1),
BOS TAURUS (1), COLUMBA LIVIA (1), TREMATOMUS NEWNESI (1), ORYCTOLAGUS CUNICULUS (1), CAPRA HIRCUS (1)
Conservation       0.159090909090909

Members
      1a00_AB_0   1a0z_AB_0   1a00_CD_0   1a0z_CD_0   1a01_CD_0   1bab_CD_0   1dxu_CD_0   1dxt_CD_0   1dxv_CD_0   1bz0_CD_0
      1bz1_CD_0   1bzz_CD_0   1qsh_CD_0   1g9v_CD_0   1vwt_CD_0   1k0y_CD_0   1o1o_CD_0   2dn2_CD_0   1coh_CD_0   2hhb_CD_0
      1gli_AB_0   1gli_CD_0   3hhb_AB_0   3hhb_CD_0   1o1k_AB_0   1o1k_CD_0   1xz2_CD_0   1xz2_AB_0   1o1l_AD_1   1o1n_AD_1
      1o1j_AD_1   1o1m_AD_1   1xz4_CD_0   1a3n_AB_0   1a3o_AB_0   1r1y_CD_0   1j3y_AB_0   2d60_AB_0   1qsi_CD_0   1j7w_AB_0
      1j7s_AB_0   1qi8_AB_0   1r1y_AB_0   2d60_CD_0   2d5z_AB_0   2d5z_CD_0   3dut_AB_0   1a01_AB_0   1o1j_AB_0   1o1o_AB_0
2dn2_AB_0   1vwt_AB_0   1bab_AB_0   1dxt_AB_0   1dxu_AB_0   1dxv_AB_0   1bz0_AB_0   1bz1_AB_0   1bzz_AB_0   1qsh_AB_0
1g9v_AB_0   1k0y_AB_0   1coh_AB_0   2hhb_AB_0   1gbu_AB_0   1qsi_AB_0   1o1l_AB_0   1o1m_AB_0   1o1n_AB_0   1qi8_CD_0
4hhb_AB_0   1j7w_CD_0   1cls_AB_0   1a0u_CD_0   1hbb_CD_0   1xxt_CD_0   1xzv_CD_0   1y85_CD_0   1xz5_CD_0   1y0d_CD_0
1y0t_CD_0   1y4q_CD_0   1y35_CD_0   1y22_CD_0   1y5f_CD_0   1y31_CD_0   1y4v_CD_0   1y2z_CD_0   1y4r_CD_0   1y83_CD_0
1y7g_CD_0   1y5j_CD_0   1y7z_CD_0   1hba_CD_0   1y7c_CD_0   1y7d_CD_0   1yih_CD_0   1xy0_CD_0   1y0c_CD_0   1y0a_CD_0
1xzu_CD_0   1rps_AB_0   1rq4_AB_0   1yh9_AB_0   1yhe_AB_0   1rq3_AB_0   1y0w_AB_0   1y45_AB_0   1y4f_AB_0   1y4g_AB_0
1y4p_AB_0   1y4b_AB_0   1ye2_AB_0   1rps_CD_0   1rq4_CD_0   1rq3_CD_0   1y0w_CD_0   1ye2_CD_0   1yhe_CD_0   1y45_CD_0
1y4f_CD_0   1y4g_CD_0   1y4p_CD_0   1y4b_CD_0   1y46_CD_0   1xye_AB_0   1xz7_AB_0   1xz4_AB_0   1y5k_CD_0   1a3o_CD_0
1yh9_CD_0   1j3y_CD_0   1j3z_CD_0   1j3y_EF_0   1j3z_EF_0   1j3z_AB_0   2hbs_CD_0   2hbs_GH_0   1hgb_AB_0   1a0u_AB_0
1hbb_AB_0   1xxt_AB_0   1y4v_AB_0   1xz5_AB_0   1xzv_AB_0   1y0d_AB_0   1y85_AB_0   1y0t_AB_0   1y4q_AB_0   1y22_AB_0
1y35_AB_0   1y2z_AB_0   1y5f_AB_0   1y4r_AB_0   1y7z_AB_0   1y31_AB_0   1y7g_AB_0   1y83_AB_0   1y5j_AB_0   1hba_AB_0
1y7c_AB_0   1y7d_AB_0   1yih_AB_0   1xy0_AB_0   1y0a_AB_0   1y0c_AB_0   1xzu_AB_0   1kd2_CD_0   1lfl_CD_0   1y09_AB_0
2hbs_AB_0   2hbs_EF_0   1kd2_AB_0   1xye_CD_0   1y09_CD_0   1xz7_CD_0   2dxm_CD_0   4hhb_CD_0   1a3n_CD_0   2w6v_AB_0
2w6v_CD_0   1abw_AB_0   1c7b_AB_0   1c7d_AB_0   1c7c_AB_0   1o1p_AB_0   1j7y_CD_0   1abw_AD_1   1c7b_CD_0   1c7d_AD_1
1c7c_AD_1   1o1p_AD_1   1j7y_AB_0   6hbw_AB_0   6hbw_CD_0   1lfl_AB_0   1j7s_CD_0   1uiw_CD_0   1uiw_EF_0   1uiw_GH_0
2dxm_AB_0   1uiw_AB_0   1hdb_AB_0   2hhd_AB_0   1b86_AB_0   1hga_AB_0   1hgc_AB_0   1y5k_AB_0   1nih_AB_0   1nih_CD_0
2w72_AB_0   2w72_CD_0   1hdb_CD_0   2hhd_CD_0   1lfl_RS_0   1bbb_AB_0   1nqp_AB_0   1yvq_AB_0   1qxe_AB_0   3ic0_AB_0
3ic2_AB_0   1bbb_CD_0   1buw_CD_0   1buw_AB_0   1nqp_CD_0   1yvq_CD_0   1sdk_AB_0   1sdl_AB_0   1sdk_CD_0   1sdl_CD_0
1rqa_AB_0   1rqa_CD_0   1yeo_CD_0   1yev_CD_0   1yeu_CD_0   1ygd_CD_0   1yeo_AB_0   1yev_AB_0   1yeu_AB_0   1yhr_AB_0
1ird_AB_0   2dn3_AB_0   2dn1_AB_0   1j40_EF_0   1j41_EF_0   1yvt_AB_0   3d7o_AB_0   1k1k_AB_0   1ljw_AB_0   2hbc_AB_0
1j40_AB_0   1j41_AB_0   1j40_CD_0   1j41_CD_0   1mko_AB_0   1gzx_CD_0   1thb_AB_0   1thb_CD_0   1hgb_CD_0   1r1x_AB_0
1y46_AB_0   1b86_CD_0   1hga_CD_0   1hgc_CD_0   1fhj_AB_0   1fhj_CD_0   1yhr_CD_0   1cls_CD_0   1j3y_GH_0   1j3z_GH_0
3dut_CD_0   2hhe_CD_0   2yrs_AB_0   2yrs_MO_0   2yrs_CD_0   2yrs_IK_0   1lfq_AB_0   1lft_AB_0   1rvw_AB_0   2hbe_AB_0
2hbf_AB_0   2hbd_AB_0   1lfv_AB_0   1lfl_PQ_0   1fdh_AG_0   1fdh_BH_0   1gzx_AB_0   1yff_AB_0   1yff_CD_0   1yff_EF_0
1yff_GH_0   1g09_AB_0   1hda_AB_0   1hda_CD_0   1m9p_AB_0   1yie_AB_0   1yie_CD_0   1m9p_CD_0   1nej_AB_0   1nej_CD_0
1yen_CD_0   1yeq_CD_0   1yg5_CD_0   1yeq_AB_0   1ygd_AB_0   1hho_AB_0   1ye0_AB_0   1ygf_AB_0   2hhe_AB_0   1bij_CD_0
1j40_GH_0   1j41_GH_0   2b7h_AB_0   2b7h_CD_0   1hab_CD_0   1hac_CD_0   1y8w_AB_0   1yen_AB_0   1yg5_AB_0   1aj9_AB_0
1cmy_AB_0   1cmy_CD_0   3b75_AB_0   3b75_CD_0   1dke_AB_0   1dke_CD_0   1a9w_AE_0   1a9w_CF_0   1o1i_AB_0   1aby_AB_0
1ye0_CD_0   1ygf_CD_0   1gbu_CD_0   1gbv_AB_0   1gbv_CD_0   1hab_AB_0   1hac_AB_0   3b75_GH_0   1aby_AD_1   1mko_CD_0
1yzi_AB_0   1qxd_AB_0   1qxd_CD_0   1qxe_CD_0   3ic0_CD_0   3ic2_CD_0   1shr_AB_0   1shr_CD_0   1si4_AB_0   1si4_CD_0
3d4x_AB_0   3d4x_CD_0   3gou_CD_0   1bij_AB_0   3b75_ST_0   3d17_AB_0   3d17_CD_0   1y8w_CD_0   3b75_EF_0   2qu0_AB_0
2qu0_CD_0   3gou_AB_0   1jeb_AB_0   1jeb_CD_0   1fsx_AB_0   1fsx_CD_0   1g08_AB_0   1g08_CD_0   3cy5_CD_0   2qsp_AB_0
2qss_AB_0   3cy5_AB_0   2qsp_CD_0   2qss_CD_0   3d1a_AB_0   3d1a_CD_0   1g0a_AB_0   1g0a_CD_0   1g0b_AB_0   1ns6_AB_0
1ns9_AB_0   1ibe_AB_0   2zlt_AB_0   2zlv_AB_0   2zlu_AB_0   1iwh_AB_0   2d5x_AB_0   1y8k_AB_0   1y8k_CD_0   2mhb_AB_0
1y8i_AB_0   2rao_AB_0   2rao_CD_0   1qpw_CD_0   2zlw_AB_0   2zlw_CD_0   1y8i_CD_0   2zlx_AB_0   2zlx_CD_0   1hco_AB_0
2hco_AB_0   3fh9_AB_0   2pgh_CD_0   1qpw_AB_0   2ri4_KL_0   2ri4_CD_0   2ri4_AB_0   2pgh_AB_0   1a4f_AB_0   1c40_AB_0
1hv4_AB_0   1hv4_EF_0   1hv4_CD_0   1hv4_GH_0   1hbr_AB_0   1hbr_CD_0   2qmb_CD_0   2qmb_AB_0   2zfb_AB_0   1v75_AB_0
2z6n_AB_0   1wmu_AB_0   2r80_AB_0   2r80_CD_0   3dhr_AB_0   3dhr_EF_0   3dhr_CD_0   3dhr_GH_0   3fs4_AB_0   3fs4_CD_0
3dht_AB_0   2ri4_IJ_0   3hrw_AB_0   1hbs_AB_0   1s0h_AB_0   1hbs_EF_0   1hbs_CD_0   1fn3_AB_0   1fn3_CD_0   3hrw_CD_0
2dhb_AB_0   1hbs_GH_0   1cg5_AB_0   1cg8_AB_0   1gcv_AB_0   1gcv_CD_0   1gcw_AB_0   1gcw_CD_0   1hds_AB_0   1out_AB_0
1ouu_AB_0   1ouu_CD_0   1v4u_AB_0   1v4u_CD_0   1v4w_AB_0   1v4w_CD_0   1v4x_AB_0   1v4x_CD_0   3bcq_AB_0   3bcq_CD_0
2r1h_AB_0   3bom_AB_0   2r1h_CD_0   3bom_CD_0   1spg_AB_0   1xq5_AB_0   3bj1_AB_0   3bj2_CD_0   3bj2_AB_0   3bj1_CD_0
3bj3_CD_0   1hbh_AB_0   1hbh_CD_0   1la6_AB_0   2h8d_AB_0   2h8f_AB_0   2h8d_CD_0   2h8f_CD_0   1s5x_AB_0   2peg_AB_0
3d1k_AB_0   3gkv_AB_0   1s5y_AB_0   1pbx_AB_0   1t1n_AB_0   2aa1_CD_0   1a00_BA_0   1a0z_BA_0   1xz2_BA_0   1xz4_BA_0
2hbs_BA_0   2hbs_HG_0   1a01_DC_0   1bab_DC_0   1bz0_DC_0   1bz1_DC_0   1bzz_DC_0   1dxv_DC_0   1vwt_DC_0   1o1o_DC_0
2dn2_DC_0   1qsh_DC_0   1g9v_DC_0   1k0y_DC_0   1o1j_DA_0   1qi8_BA_0   1o1l_DA_0   1o1n_DA_0   1coh_DC_0   2hhb_DC_0
1dxt_DC_0   1dxu_DC_0   1gbu_DC_0   1qsi_DC_0   1j7s_BA_0   4hhb_DC_0   1o1k_BA_0   1o1k_DC_0   1o1m_DA_0   1yih_DC_0
1a01_BA_0   1bab_BA_0   1dxv_BA_0   1qsh_BA_0   1bz0_BA_0   1bz1_BA_0   1bzz_BA_0   1qsi_BA_0   1o1n_BA_0   1vwt_BA_0
2dn2_BA_0   1dxt_BA_0   1dxu_BA_0   1coh_BA_0   2hhb_BA_0   1gli_BA_0   1gli_DC_0   3hhb_BA_0   3hhb_DC_0   1o1o_BA_0
1g9v_BA_0   1k0y_BA_0   1gbu_BA_0   4hhb_BA_0   1j7s_DC_0   1j7w_DC_0   1qi8_DC_0   2hbs_DC_0   1r1y_BA_0   1r1y_DC_0
2d60_BA_0   2d5z_BA_0   2d5z_DC_0   1cls_BA_0   1j7w_BA_0   1a0u_DC_0   1hbb_DC_0   1y4v_DC_0   1y83_DC_0   1xz5_DC_0
1xzv_DC_0   1y85_DC_0   1xy0_DC_0   1y0t_DC_0   1y4q_DC_0   1y35_DC_0   1y5f_DC_0   1y4r_DC_0   1y5j_DC_0   1y7z_DC_0
1y7g_DC_0   1y0d_DC_0   1y7c_DC_0   1y7d_DC_0   1y0c_DC_0   1xzu_DC_0   1y0a_DC_0   1y22_DC_0   1hba_DC_0   1rq3_DC_0
1y0w_DC_0   1y45_DC_0   1y4f_DC_0   1y4g_DC_0   1y4p_DC_0   1y46_DC_0   1y4b_DC_0   1rps_DC_0   1rq4_DC_0   1xye_DC_0
1y09_DC_0   1ye2_DC_0   1yh9_DC_0   1yhe_DC_0   1y5k_DC_0   1hda_BA_0   1hda_DC_0   1xz7_DC_0   1y31_DC_0   1a0u_BA_0
1xxt_BA_0   1hbb_BA_0   1y83_BA_0   1xz5_BA_0   1xzv_BA_0   1y85_BA_0   1xy0_BA_0   1y0t_BA_0   1y5f_BA_0   1y4v_BA_0
1y4q_BA_0   1y4r_BA_0   1y35_BA_0   1y7g_BA_0   1y7z_BA_0   1y5j_BA_0   1y7d_BA_0   1y0d_BA_0   1y31_BA_0   1xzu_BA_0
1y0a_BA_0   1y0c_BA_0   1hba_BA_0   1yih_BA_0   1y22_BA_0   1y7c_BA_0   1thb_BA_0   1kd2_DC_0   1rps_BA_0   1rq4_BA_0
1xz7_BA_0   1rq3_BA_0   1y0w_BA_0   1yhe_BA_0   1y45_BA_0   1y4f_BA_0   1y4g_BA_0   1y4p_BA_0   1y4b_BA_0   1xye_BA_0
1y46_BA_0   1y09_BA_0   1y5k_BA_0   1yeo_BA_0   1yev_BA_0   1yeu_BA_0   1rqa_BA_0   1ye2_BA_0   1yh9_BA_0   1yie_BA_0
2hbs_FE_0   1a00_DC_0   1a0z_DC_0   1xz2_DC_0   1xz4_DC_0   1nih_BA_0   1abw_DA_0   1c7b_DC_0   1c7c_DA_0   1o1p_DA_0
1c7d_DA_0   2hhd_BA_0   1hdb_BA_0   2dxm_BA_0   1uiw_DC_0   1uiw_HG_0   1uiw_BA_0   1uiw_FE_0   1gbv_DC_0   1hdb_DC_0
2hhd_DC_0   1gbv_BA_0   2hhe_DC_0   1a3n_BA_0   1a3o_DC_0   1a3o_BA_0   1j3y_BA_0   2d60_DC_0   2w72_BA_0   1j3y_FE_0
1j3z_FE_0   1j3z_BA_0   2w72_DC_0   1b86_BA_0   1hga_BA_0   1hgc_BA_0   1hgb_BA_0   1hgb_DC_0   1gzx_BA_0   1cls_DC_0
1thb_DC_0   1hga_DC_0   1hgc_DC_0   2yrs_BA_0   2yrs_OM_0   1nih_DC_0   2yrs_DC_0   2yrs_KI_0   1lfl_DC_0   1lfl_QP_0
1lfl_SR_0   3d4x_BA_0   3d4x_DC_0   1j3y_DC_0   1j3y_HG_0   1j3z_HG_0   1j3z_DC_0   1j40_DC_0   1j41_DC_0   1j40_HG_0
1j41_HG_0   1rqa_DC_0   1yeo_DC_0   1yev_DC_0   1yeu_DC_0   1yie_DC_0   1yhr_BA_0   1yeq_DC_0   1ygd_DC_0   1kd2_BA_0
2dxm_DC_0   1y2z_BA_0   1y2z_DC_0   1b86_DC_0   1gzx_DC_0   1bij_DC_0   1ygf_BA_0   1ye0_BA_0   1a3n_DC_0   2w6v_BA_0
6hbw_DC_0   1j7y_BA_0   1j7y_DC_0   2w6v_DC_0   6hbw_BA_0   1abw_BA_0   1c7b_BA_0   1c7d_BA_0   1c7c_BA_0   1o1p_BA_0
2hhe_BA_0   1dke_BA_0   1lfl_BA_0   1j40_BA_0   1j41_BA_0   1j40_FE_0   1j41_FE_0   1qxd_BA_0   1qxe_BA_0   3ic0_BA_0
1aj9_BA_0   1k1k_BA_0   1lfq_BA_0   1lft_BA_0   2hbc_BA_0   2hbf_BA_0   2hbe_BA_0   1lfv_BA_0   2hbd_BA_0   1rvw_BA_0
1ird_BA_0   2dn3_BA_0   2dn1_BA_0   3d7o_BA_0   1yvt_BA_0   1ljw_BA_0   1r1x_BA_0   1sdk_BA_0   1sdl_BA_0   2b7h_BA_0
2b7h_DC_0   3gou_DC_0   1cmy_BA_0   1cmy_DC_0   1hho_BA_0   1y8w_BA_0   1yen_BA_0   1yg5_BA_0   1yeq_BA_0   1ygd_BA_0
2rao_BA_0   2rao_DC_0   1yen_DC_0   1yg5_DC_0   1yhr_DC_0   1fdh_GA_0   1fdh_HB_0   1ye0_DC_0   3dut_DC_0   1dke_DC_0
1fsx_BA_0   1fsx_DC_0   1g0b_BA_0   1ns9_BA_0   1ibe_BA_0   1g08_BA_0   1g09_BA_0   1g09_DC_0   1g0a_BA_0   1g0a_DC_0
1g08_DC_0   3cy5_DC_0   1iwh_BA_0   2d5x_BA_0   2qsp_BA_0   2qss_BA_0   2qsp_DC_0   2qss_DC_0   1sdk_DC_0   1sdl_DC_0
1y8i_DC_0   2zlv_BA_0   1qpw_DC_0   1ns6_BA_0   2zlt_BA_0   2zlu_BA_0   1y8i_BA_0   1y8k_BA_0   2mhb_BA_0   2qu0_DC_0
2zlw_BA_0   2zlw_DC_0   2qu0_BA_0   1hab_DC_0   1hac_DC_0   1o1i_BA_0   1ygf_DC_0   1bbb_BA_0   1bbb_DC_0   1buw_BA_0
1buw_DC_0   3b75_BA_0   1y8k_DC_0   1nqp_BA_0   1yvq_BA_0   1si4_BA_0   1nqp_DC_0   1yvq_DC_0   3b75_DC_0   1yff_FE_0
1yff_HG_0   1yff_BA_0   1yff_DC_0   1qxd_DC_0   1qxe_DC_0   3ic0_DC_0   3ic2_DC_0   1shr_BA_0   1shr_DC_0   3ic2_BA_0
1si4_DC_0   1m9p_BA_0   1m9p_DC_0   1nej_BA_0   1nej_DC_0   3b75_TS_0   1y8w_DC_0   3cy5_BA_0   1yzi_BA_0   3d17_BA_0
3d17_DC_0   2ri4_DC_0   3dut_BA_0   1mko_DC_0   1hco_BA_0   2hco_BA_0   3gou_BA_0   1a9w_EA_0   1a9w_FC_0   1aby_DA_0
1cbl_AD_0   1cbl_BC_0   1cbm_AD_0   1cbm_BC_0   1cbl_DA_0   1cbm_DA_0   1cbl_CB_0   1cbm_CB_0   1hab_BA_0   1hac_BA_0
3d1a_BA_0   3d1a_DC_0   2ri4_BA_0   1qpw_BA_0   1fhj_BA_0   1fhj_DC_0   1mko_BA_0   1bij_BA_0   2ri4_JI_0   2pgh_BA_0
3b75_FE_0   1aby_BA_0   1i3e_AB_0   1i3e_BA_0   3fh9_BA_0   1jeb_BA_0   1jeb_DC_0   3hrw_BA_0   3hrw_DC_0   2pgh_DC_0
3b75_HG_0   1ch4_AD_0   1ch4_BC_0   1ch4_CB_0   1ch4_DA_0   1s0h_BA_0   2zlx_BA_0   2zlx_DC_0   2ri4_LK_0   3dht_BA_0
2dhb_BA_0   1hbs_HG_0   1a4f_BA_0   1c40_BA_0   2r80_BA_0   3dhr_BA_0   3dhr_DC_0   3dhr_FE_0   3dhr_HG_0   3fs4_BA_0
3fs4_DC_0   2qmb_DC_0   2qmb_BA_0   2r80_DC_0   2zfb_BA_0   1hv4_BA_0   1hv4_FE_0   1hv4_DC_0   1hv4_HG_0   1hbr_BA_0
1hbr_DC_0   1v75_BA_0   1wmu_BA_0   2z6n_BA_0   1hbs_FE_0   1hds_BA_0   1fn3_BA_0   1fn3_DC_0   1cg5_BA_0   1cg8_BA_0
1gcv_BA_0   1gcv_DC_0   1gcw_BA_0   1gcw_DC_0   2r1h_BA_0   3bom_BA_0   2r1h_DC_0   3bom_DC_0   1hbh_BA_0   1hbh_DC_0
      2h8d_BA_0   2h8f_BA_0   2h8d_DC_0   2h8f_DC_0   1v4w_BA_0   1v4w_DC_0   1v4x_BA_0   1v4x_DC_0   1la6_BA_0   1s5x_BA_0
      2peg_BA_0   3gkv_BA_0   3d1k_BA_0   1s5y_BA_0   1s5y_DC_0   2aa1_BA_0   2aa1_DC_0   3bcq_DC_0   1out_BA_0   1ouu_BA_0
      1ouu_DC_0   1pbx_BA_0   1t1n_BA_0   1v4u_BA_0   1v4u_DC_0   3bcq_BA_0   1xq5_BA_0   1xq5_DC_0   3bj1_DC_0   3bj2_DC_0
      3bj3_BA_0   3bj3_DC_0   3bj1_BA_0   3bj2_BA_0   1hbs_DC_0   1hbs_BA_0   1hds_DC_0   1spg_BA_0   1i3d_AB_0   1i3d_BA_0
      2h35_BA_0   2h35_DC_0   2h35_AB_0   2h35_CD_0

Peptides

PartnerDomains

Dist Members Intf   Alignment
      1xxt_DC_0     H     V       F       T     P       A     H       A       D
      1a00_AB_0     N     C       F       T     P       P     Q       A       Q
      1y7z_CD_0     A     C       F       T     P       P     Q       A       Q
      1abw_AB_0     K     C       F       T     P       P     Q       A       Q
      1fhj_AB_0     N     C       F       T     P       Q     Q       A       Q
      1fdh_AG_0     N     T       F       T     P       E     Q       A       Q
      1g09_AB_0     N     V       F       T     P       V     Q       A       Q
      1a9w_AE_0     N     I       F       T     P       E     Q       A       Q
      1gbv_AB_0     N     G       F       T     P       P     Q       A       Q
      3d4x_AB_0     N     C       F       N     P       Q     Q       A       Q
      1jeb_AB_0     N     I       F       T     P       A     Q       A       Q
      3d1a_AB_0     N     V       F       T     P       L     Q       A       Q
      1g0b_AB_0     N     V       F       T     P       E     Q       A       Q
      2rao_AB_0     N     I       F       T     P       Q     Q       A       Q
      1qpw_CD_0     N     V       F       N     P       D     Q       A       Q
      1a4f_AB_0     D     I       F       T     P       D     Q       A       Q
      1hbr_AB_0     D     I       F       T     P       E     Q       A       Q
      1v75_AB_0     N     I       F       T     P       A     Q       A       T
      2dhb_AB_0     N     L       F       T     P       E     Q       A       Q
      1cg5_AB_0     Q     V       F       R     P       K     H       A       Y
      1gcv_AB_0     D     V       F       T     P       H     Q       G       D
      1hds_AB_0     N     L       F       T     P       N     Q       A       Q
      1v4u_AB_0     D     V       F       T     V             Q       C       Q
      3bcq_AB_0     D     V       F       T     P             Q       E       Q
      2r1h_AB_0     D     V       F       S     A       D     Q       E       Q
      1spg_AB_0     E     M       F       T     P       E     H       E       Q
      3bj1_AB_0     D     I       F       S     G             Q       A       Q
      3bj3_CD_0     D     I       F       S     G       E     Q       A       Q
      1hbh_AB_0     D     I       F       T     A       E     Q       G       Q
      2aa1_CD_0     D     I       F       T     G       E     Q       A       Q
      1g0b_BA_0     H     S       F       T     P       A     H       A       D
      1qpw_DC_0     H     V       F       N     P       S     H       A       D
      1jeb_BA_0     H     V       F       T     A       E     H       A       D
      1a4f_BA_0     H     V       L       T     A       E     H       A       D
      2r80_BA_0   H     V     L     T     P     E     H     A     D
      3fs4_BA_0   Q     V     L     T     P     E     H     A     D
      1hbr_BA_0   Q     V     Y     T     P     E     H     A     D
      1v75_BA_0   H     V     Y     T     P     Q     Q     V     D
      1hds_BA_0   H     V     F     T     P     A     H     A     N
      1cg5_BA_0   D     V     F     T     P     V     H     C     D
      1gcv_BA_0   E     V     F     S     P     D     H     C     D
      2r1h_BA_0   H     V     F     T     P     E     H     L     D
      1hbh_BA_0   H     V     F     T     P     E     H     V     D
      1v4w_BA_0   H     V     F     T     P     D     H     V     D
      1out_BA_0   H     V     F     T     P     E     H     I     D
      1spg_BA_0   H     L     F     T     P           H     L     D

Dist Members ResidueID Alignment
      1xxt_DC_0   103   107   117   118   119   120   122   123   126
      1a00_AB_0   108   112   122   123   124   125   127   128   131
      1y7z_CD_0   108   112   122   123   124   125   127   128   131
      1abw_AB_0   108   112   122   123   124   125   127   128   131
      1fhj_AB_0   108   112   122   123   124   125   127   128   131
      1fdh_AG_0   108   112   122   123   124   125   127   128   131
      1g09_AB_0   108   112   122   123   124   125   127   128   131
      1a9w_AE_0   108   112   122   123   124   125   127   128   131
      1gbv_AB_0   108   112   122   123   124   125   127   128   131
      3d4x_AB_0   108   112   122   123   124   125   127   128   131
      1jeb_AB_0   108   112   122   123   124   125   127   128   131
      3d1a_AB_0   108   112   122   123   124   125   127   128   131
      1g0b_AB_0   108   112   122   123   124   125   127   128   131
      2rao_AB_0   108   112   122   123   124   125   127   128   131
      1qpw_CD_0   108   112   122   123   124   125   127   128   131
      1a4f_AB_0   108   112   122   123   124   125   127   128   131
      1hbr_AB_0   108   112   122   123   124   125   127   128   131
      1v75_AB_0   108   112   122   123   124   125   127   128   131
      2dhb_AB_0   108   112   122   123   124   125   127   128   131
      1cg5_AB_0   103   107   117   118   119   120   122   123   126
      1gcv_AB_0   98    102   112   113   114   115   117   118   121
      1hds_AB_0   107   111   121   122   123   124   126   127   130
      1v4u_AB_0   108   112   122   123   124         127   128   131
      3bcq_AB_0   108   112   123   124   125         128   129   132
      2r1h_AB_0   108   112   123   124   125   126   128   129   132
      1spg_AB_0   108   112   123   124   125   126   128   129   132
      3bj1_AB_0   108   112   122   123   124         127   128   131
      3bj3_CD_0   108   112   122   123   124   125   127   128   131
      1hbh_AB_0   108   112   122   123   124   125   127   128   131
      2aa1_CD_0   108   112   122   123   124   125   127   128   131
      1g0b_BA_0   103   107   117   118   119   120   122   123   126
        1qpw_DC_0   103   107   117    118   119   120   122   123   126
        1jeb_BA_0   103   107   117    118   119   120   122   123   126
        1a4f_BA_0   103   107   117    118   119   120   122   123   126
        2r80_BA_0   103   107   117    118   119   120   122   123   126
        3fs4_BA_0   103   107   117    118   119   120   122   123   126
        1hbr_BA_0   103   107   117    118   119   120   122   123   126
        1v75_BA_0   103   107   117    118   119   120   122   123   126
        1hds_BA_0   103   107   117    118   119   120   122   123   126
        1cg5_BA_0   104   108   117    118   119   120   122   123   126
        1gcv_BA_0   103   107   116    117   118   119   121   122   125
        2r1h_BA_0   104   108   118    119   120   121   123   124   127
        1hbh_BA_0   104   108   118    119   120   121   123   124   127
        1v4w_BA_0   105   109   119    120   121   122   124   125   128
        1out_BA_0   104   108   118    119   120   121   123   124   127
        1spg_BA_0   105   109   119    120   121         124   125   128

Alignment Occupancy       1     1      1     1     1     0.913 1     1      1
Gap in betw Columns       3     8,10   0     0     0     1     0     2

SLIM   RegEx        [FLY][TSNR][PAGV][EADPQVSNKHL].[QH][ACEVGLI]..[QDTNY]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 23.6459703242973
SLIM   I=181997 Im=7834 Id=43 Idm=4
SLIM   PSSM p-value 0.0761688052635705

PSSM Listing
Pos 0 F(5.887) Y(4.183) L(1.496) W(1.012) V(0.503) M(0.328) I(0.328) H(-0.42)   C(-1.89) A(-1.89) S(-2) T(-2) Q(-2.67)
R(-2.82) K(-2.82) N(-2.92) E(-2.92) G(-3.04) D(-3.04) P(-3.82)
Gap (0)
Pos 1 T(3.815) N(3.310) S(1.971) R(1.288) D(0.921) G(0.875) P(0.828) K(0.130)   Q(0.036) E(0) H(-0.10) A(-0.58) M(-
1.04) C(-1.07) Y(-2) L(-2.04) I(-2.05) V(-2.05) F(-2.05) W(-3.04)
Gap (0)
Pos 2 P(6.808) G(3.277) A(1.636) T(0.899) V(0.318) S(-0.49) I(-0.67) E(-1.05)   Q(-1.05) K(-1.05) N(-1.06) D(-1.07)
M(-1.57) R(-1.87) C(-1.97) H(-2.01) L(-2.01) Y(-2.74) F(-3.26) W(-3.52)
Gap (0)
Pos 3 P(4.560) H(4.179) E(4.034) D(3.847) Q(2.769) N(2.275) A(1.836) K(1.534)   V(1.057) S(0.778) L(0.329) T(0.149)
I(0.106) R(-0.11) M(-0.70) Y(-1.20) G(-1.29) C(-1.80) F(-2.35) W(-3.00)
Gap (1)
Pos 4 H(7.062) Q(4.507) E(1.586) Y(1.136) R(0.715) K(0.586) N(0.514) D(0.514)   T(0) S(-0.28) M(-0.41) P(-1.28) A(-
1.28) F(-1.74) G(-2) V(-2) W(-2) L(-2.28) C(-3) I(-3)
Gap (0)
Pos 5 C(6.271) A(3.642) G(2.904) E(2.297) V(1.538) I(1.132) L(1.097) S(0.713)   M(-0.16) Q(-0.27) D(-0.51) T(-0.73)
K(-0.78) R(-1.07) N(-1.08) P(-1.20) F(-1.62) H(-1.74) Y(-1.82) W(-2.76)
Gap (2)
Pos 6 D(5.009) Q(4.434) Y(3.181) N(2.338) E(1.939) T(1.022) K(0.541) R(0.481) S(0.054) H(-0.11) M(-0.50) F(-0.71)
P(-0.89) G(-1.22) A(-1.30) W(-1.40) V(-2.23) L(-2.35) C(-2.83) I(-2.83)
//

===============================
 SLIM 141
===============================
ID           Globin.clust.0.15.6
Center             2zs1_DB_0
AvSimToCtr 0.406
AvRMSDToCtr 1.361 A
Size         6
NumDistinct 5
FracDDI            0
FracPeptides       0
FracIntra    0
Species            OLIGOBRACHIA MASHIKOI (4), LUMBRICUS TERRESTRIS (1)
Conservation       0.8

Members
      1x9f_AB_0 2d2m_DB_0 2zs0_DB_0 2d2m_CA_0 2zs0_CA_0 2zfo_DB_0

Peptides

PartnerDomains

Dist Members Intf   Alignment
      2zs1_DB_0     S     L     L     K     R       A
      1x9f_AB_0     V     L     L           S
      2d2m_CA_0     R     L     I           T
      2zs0_CA_0     R     L     I     K     T
      2zfo_DB_0     S           L     L     R

Dist Members ResidueID Alignment
      2zs1_DB_0   4     5     8       11    12      15
      1x9f_AB_0   6     7     10            14
      2d2m_CA_0   4     5     8             12
      2zs0_CA_0   4     5     8       11    12
      2zfo_DB_0   4           5       8     12

Alignment Occupancy       1     0.8   1     0.6     1    0.2
Gap in betw Columns       0     2     2     0,3

SLIM RegEx          [SRV]L..[LI]..[KL].{0,3}[TRS]
SLIM Coverage             1
SLIM PSSM Match Cutoff 17.6142926580109
SLIM I=181997 Im=5732 Id=43 Idm=1
SLIM PSSM p-value 1

PSSM Listing
Pos 0 R(4.086) S(3.091) V(2.397) I(1.408) K(1.218) Q(0.415) N(0.403) A(0.360) T(0.232) M(-0.17) E(-0.18) L(-0.42)
H(-0.58) G(-0.76) D(-0.76) C(-1.42) P(-1.47) Y(-1.70) F(-1.91) W(-3)
Gap (0)
Pos 1 L(3.776) V(2.776) M(1.776) I(1.776) F(-0.22) C(-1.22) A(-1.22) Y(-1.22) S(-2.22) T(-2.22) Q(-2.22) R(-2.22)
K(-2.22) W(-2.22) P(-3.22) N(-3.22) E(-3.22) H(-3.22) G(-4.22) D(-4.22)
Gap (2)
Pos 2 L(3.575) I(3.268) V(2.575) M(1.708) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2.29) R(-2.29) K(-2.29) W(-2.29)
P(-3) N(-3) E(-3) H(-3) D(-3.47) G(-4)
Gap (2)
Pos 3 K(4.084) L(2.395) V(1.395) R(1.092) M(0.485) I(0.403) Q(0.108) E(0.092) S(-0.85) T(-0.85) N(-0.89) A(-1.51)
F(-1.51) P(-1.85) H(-1.85) D(-1.89) Y(-2.05) C(-2.36) G(-2.85) W(-3.05)
Gap (0,3)
Pos 4 R(4.087) T(3.114) S(2.497) K(1.268) Q(0.523) N(0.295) G(0.293) D(0.293) P(0.194) E(0) H(-0.13) A(-0.17) M(-1)
C(-1.42) L(-2) Y(-2) I(-2.29) V(-2.29) F(-2.29) W(-3)
//

===============================
 SLIM 142
===============================
ID           Globin.clust.0.25.2
Center             1rq3_CB_0
AvSimToCtr 0.596
AvRMSDToCtr 0.771 A
Size         445
NumDistinct 42
FracDDI            0.69047619047619
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (18), MUS MUSCULUS (3), EQUUS CABALLUS (3), MUSTELUS GRISEUS (2), ODOCOILEUS
VIRGINIANUS (2), TREMATOMUS BERNACCHII (2), BUBALUS BUBALIS (2), ONCORHYNCHUS MYKISS (1), CANIS FAMILIARIS (1),
PERCA FLAVESCENS (1), TREMATOMUS NEWNESI (1), ORYCTOLAGUS CUNICULUS (1), THUNNUS THYNNUS (1), CAPRA HIRCUS (1)
Conservation       0.461538461538462

Members
      1a00_AD_0   1a00_CB_0   1y46_AD_0   1y46_CB_0   1hba_AD_0   1hba_CB_0   1y4f_AD_0   1y4p_AD_0   1y4g_AD_0   1y4g_CB_0
      1y4f_CB_0   1y4p_CB_0   1gzx_CB_0   1hgb_CB_0   1ye2_AD_0   1yhe_AD_0   1yh9_AD_0   1ye2_CB_0   1yh9_CB_0   1yhe_CB_0
      1ygf_AD_0   1j40_CB_0   1j41_CB_0   1j40_GF_0   1j41_GF_0   2d5z_CB_0   1rps_AD_0   1rq4_AD_0   1rps_CB_0   1rq4_CB_0
      1a01_AD_0   1bab_AD_0   1dxu_AD_0   1dxv_AD_0   1bz0_AD_0   1bz1_AD_0   1bzz_AD_0   1dxt_AD_0   1qsh_AD_0   1o1o_AD_0
      2dn2_AD_0   1c7b_AD_0   1c7c_AD_0   1c7d_AD_0   1o1n_AD_0   1o1j_AD_0   1o1l_AD_0   3dut_AD_0   1g9v_AD_0   1k0y_AD_0
      1o1k_AD_0   1o1k_CB_0   1vwt_AD_0   1hdb_AD_0   1o1m_AD_0   1j7w_CB_0   1qi8_CB_0   1a3n_CB_0   2w6v_AD_0   2d60_CB_0
      1j7y_CB_0   2w72_CB_0   1abw_AD_0   1thb_CB_0   1gbu_AD_0   1o1p_AD_0   1y0a_AD_0   1y0a_CB_0   1y7g_CB_0   1a0u_AD_0
      1xxt_AD_0   1hbb_AD_0   1y85_AD_0   1xy0_AD_0   1xzv_AD_0   1y0c_AD_0   1y0d_AD_0   1y0t_AD_0   1y35_AD_0   1y7z_AD_0
      1y22_AD_0   1y5f_AD_0   1y31_AD_0   1y2z_AD_0   1y4r_AD_0   1y4q_AD_0   1y4v_AD_0   1y5j_AD_0   1xz5_AD_0   1y83_AD_0
      1y7g_AD_0   1a0u_CB_0   1hbb_CB_0   1xxt_CB_0   1y0t_CB_0   1y35_CB_0   1y7z_CB_0   1y22_CB_0   1y2z_CB_0   1y4q_CB_0
      1y4r_CB_0   1y5f_CB_0   1y31_CB_0   1y5j_CB_0   1xy0_CB_0   1y0c_CB_0   1xz5_CB_0   1y0d_CB_0   1xzv_CB_0   1y4v_CB_0
      1y85_CB_0   1y83_CB_0   1kd2_AD_0   1a0z_AD_0   1xz2_AD_0   1a0z_CB_0   1xz2_CB_0   1y0w_CB_0   1y45_CB_0   1y4b_CB_0
      1rq3_AD_0   1y0w_AD_0   1y45_AD_0   1y4b_AD_0   1j7s_AD_0   1o1l_AB_1   1hda_AD_0   1hda_CB_0   1abw_AB_1   1vwt_CB_0
      1bab_CB_0   1bz0_CB_0   1bz1_CB_0   1bzz_CB_0   1dxt_CB_0   1dxu_CB_0   1dxv_CB_0   1qsh_CB_0   1k0y_CB_0   2dn2_CB_0
      1c7b_CB_0   1c7d_AB_1   1o1o_CB_0   1c7c_AB_1   1o1j_AB_1   1o1n_AB_1   1o1m_AB_1   1g9v_CB_0   1coh_CB_0   2hhb_CB_0
      1gli_AD_0   1gli_CB_0   3hhb_AD_0   3hhb_CB_0   1qsi_AD_0   1qsi_CB_0   2dxm_CB_0   4hhb_CB_0   2hbs_GF_0   2hbs_CB_0
      1coh_AD_0   2hhb_AD_0   4hhb_AD_0   1b86_CB_0   1hga_CB_0   1hgc_CB_0   1y09_AD_0   1y09_CB_0   1a01_CB_0   1j7w_AD_0
      1qi8_AD_0   1a3n_AD_0   2w6v_CB_0   2d60_AD_0   1j7y_AD_0   2w72_AD_0   2d5z_AD_0   6hbw_AD_0   6hbw_CB_0   1r1y_CB_0
      1thb_AD_0   1b86_AD_0   1hga_AD_0   1hgc_AD_0   1j3y_AD_0   1j3z_AD_0   1j3y_EH_0   1j3z_EH_0   1j3y_CB_0   1j3z_CB_0
      1kd2_CB_0   2hbs_AD_0   2hbs_EH_0   1j7s_CB_0   2dxm_AD_0   1cls_CB_0   2hhd_CB_0   1hdb_CB_0   1gbv_CB_0   1cls_AD_0
      2hhd_AD_0   2hhe_AD_0   1gbu_CB_0   1o1p_AB_1   2yrs_AD_0   2yrs_IO_0   2yrs_MK_0   2yrs_CB_0   1hgb_AD_0   2hhe_CB_0
      1dke_AD_0   1dke_CB_0   1uiw_AD_0   1uiw_CB_0   1uiw_GF_0   1uiw_EH_0   1y5k_AD_0   1y5k_CB_0   3dut_CB_0   1bij_AD_0
      1j3y_GF_0   1j3z_GF_0   1y7c_AD_0   1y7d_AD_0   1y7c_CB_0   1y7d_CB_0   1yih_AD_0   1yih_CB_0   1nih_AD_0   1nih_CB_0
      1gbv_AD_0   1xzu_AD_0   1xzu_CB_0   1xye_AD_0   1xye_CB_0   1xz4_AD_0   1xz4_CB_0   1a3o_AD_0   1lfl_AD_0   1lfl_RQ_0
      1lfl_CB_0   1lfl_PS_0   1gzx_AD_0   1ygf_CB_0   1ye0_AD_0   1ye0_CB_0   1r1y_AD_0   1fdh_AH_0   1fdh_BG_0   1hbs_CB_0
      1a3o_CB_0   1j40_AD_0   1j41_AD_0   1j40_EH_0   1j41_EH_0   1xz7_AD_0   1xz7_CB_0   1aby_AB_1   1aby_AD_0   1y8w_AD_0
      3d4x_CB_0   3d4x_AD_0   1y8w_CB_0   1yen_AD_0   1yen_CB_0   1rqa_AD_0   1yeo_AD_0   1yeu_AD_0   1yev_AD_0   1rqa_CB_0
      1yev_CB_0   1yeu_CB_0   1yeo_CB_0   1yie_CB_0   1yg5_CB_0   1yeq_AD_0   1yie_AD_0   1yeq_CB_0   1ygd_AD_0   1ygd_CB_0
      1yhr_AD_0   1yhr_CB_0   1yg5_AD_0   1hbs_EH_0   1hbs_AD_0   1bij_CB_0   1hbs_GF_0   1hbh_AD_0   1hbh_CB_0   2h8d_AD_0
      2h8d_CB_0   2h8f_AD_0   2h8f_CB_0   2aa1_AD_0   2aa1_CB_0   1v4w_AD_0   1v4w_CB_0   1v4x_AD_0   1v4x_CB_0   2r1h_AD_0
      2r1h_CB_0   3bom_CB_0   3bom_AD_0   1gcv_AD_0   1gcv_CB_0   1fn3_AD_0   1fn3_CB_0   1a9w_AF_0   1a9w_CE_0   2ri4_AD_0
      1mko_AD_0   1mko_CB_0   3fs4_AD_0   3fs4_CB_0   1bbb_AD_0   1buw_AD_0   1buw_CB_0   2rao_AD_0   2rao_CB_0   1yvq_AD_0
      1g0a_AD_0   1g0a_CB_0   1bbb_CB_0   1qxe_AD_0   1qxd_AD_0   3ic0_AD_0   3ic2_AD_0   1nqp_CB_0   1yvq_CB_0   1shr_CB_0
      1si4_CB_0   1shr_AD_0   1si4_AD_0   3b75_AD_0   3ic0_CB_0   1m9p_CB_0   1m9p_AD_0   1nej_AD_0   1nej_CB_0   1nqp_AD_0
      1yff_EH_0   1yff_GF_0   1qxd_CB_0   1qxe_CB_0   3ic2_CB_0   3b75_CB_0   2ri4_IL_0   1cmy_AD_0   1cmy_CB_0   2ri4_KJ_0
      2ri4_CB_0   1fhj_AD_0   1fhj_CB_0   1g09_AD_0   1fsx_AD_0   2qsp_CB_0   2qss_CB_0   1fsx_CB_0   1hab_CB_0   1hab_AD_0
      1hac_AD_0   1g08_AD_0   1g08_CB_0   1hbr_AD_0   1hbr_CB_0   1y8i_CB_0   1y8k_CB_0   2qmb_AD_0   2qmb_CB_0   3dhr_AD_0
      3dhr_CB_0   3dhr_EH_0   3dhr_GF_0   2r80_AD_0   2r80_CB_0   2b7h_AD_0   2b7h_CB_0   1yff_AD_0   1yff_CB_0   1hac_CB_0
      1hv4_AD_0   1hv4_EH_0   1hv4_CB_0   1hv4_GF_0   2qsp_AD_0   2qss_AD_0   1g09_CB_0   1y8i_AD_0   1y8k_AD_0   2zlw_AD_0
      2zlw_CB_0   1qpw_AD_0   1jeb_AD_0   1jeb_CB_0   1qpw_CB_0   1sdk_AD_0   1sdl_AD_0   1sdk_CB_0   1sdl_CB_0   2qu0_AD_0
      2qu0_CB_0   3d1a_AD_0   3d1a_CB_0   3b75_GF_0   2pgh_CB_0   3cy5_AD_0   3cy5_CB_0   3gou_AD_0   3gou_CB_0   2pgh_AD_0
      3b75_EH_0   1v4u_AD_0   1v4u_CB_0   3bcq_AD_0   3bcq_CB_0   3bj3_AD_0   3bj3_CB_0   3d17_AD_0   3d17_CB_0   1gcw_AD_0
      1gcw_CB_0   1hds_AD_0   1hds_CB_0   1ouu_AD_0   1ouu_CB_0   1xq5_AD_0   1xq5_CB_0   3bj1_AD_0   3bj2_AD_0   3bj1_CB_0
      3bj2_CB_0   1cbl_AC_0   1cbl_CA_0   1cbl_BD_0   1cbl_DB_0   1cbm_AC_0   1cbm_BD_0   1cbm_CA_0   1cbm_DB_0   1ch4_AC_0
      1ch4_BD_0   1ch4_CA_0   1ch4_DB_0   3hrw_AD_0   3hrw_CB_0

Peptides

PartnerDomains
      Globin
(1rq3_CB_0,1a00_AD_0,1hba_AD_0,1y4f_AD_0,1y4p_AD_0,1ygf_AD_0,1y5j_AD_0,1y45_CB_0,1y4b_CB_0,1y45_AD_0,1y4b_AD_0,1y5k
_AD_0,1y7c_AD_0,1hbh_AD_0,1hbh_CB_0,2aa1_AD_0,1v4w_AD_0,2r1h_AD_0,1gcv_AD_0,2zlw_AD_0,1jeb_AD_0,3cy5_AD_0,3cy5_CB_0
,3gou_AD_0,1hds_AD_0,3bj1_CB_0,1ch4_AC_0,1ch4_CA_0,3hrw_CB_0)

Dist Members Intf   Alignment
      1rq3_CB_0     P     W     Q   R     E     H     V     D     P     E     N     L     Y     H
      1a00_AD_0     P     Y     Q   R     E     H     V     D     P     E     N     L     Y     H
      1hba_AD_0     P     R     Q   R     E     H     V     D     P     E     N     L     Y     H
      1y4f_AD_0     P     A     Q   R     E     H     V     D     P     E     N     L     Y     H
      1y4p_AD_0     P     E     Q   R     E     H     V     D     P     E     N     L     Y     H
      1ygf_AD_0           W     Q   R     E     A     V     D     P     E     N     L     Y     H
      1y5j_AD_0     P     W     Q   R     E     A     V     D     P     E     N     L     Y     H
      1y45_CB_0     A     W     Q   R           H     V     D     P     E     N     L     Y     H
      1y4b_CB_0     P     H     Q   R           H     V     D     P     E     N     L     Y     H
      1y45_AD_0     A     W     Q   R     E     H     V     D     P     E           L     Y     H
      1y4b_AD_0     P     H     Q   R     E     H     V     D     P     E     N     L     Y     H
      1y5k_AD_0     P     W     Q   R     E     H     V     A     P     E     N     L     Y     H
      1y7c_AD_0     P     W     Q   R     E     H     V     D     A     E     N     L     Y     H
      1hbh_AD_0                 Q               H     V     D     P     D     N     L     Y     H
      1hbh_CB_0     P     W     Q   R           H     V     D     P     D     N     L     Y     H
      2aa1_AD_0     P     W     Q   R           H     V     D     P     D     N     L     Y     R
      1v4w_AD_0     P     W     Q   R           H     V     D     P     D     N     I     Y     H
      2r1h_AD_0     P     W     Q   R     S     F     V     D     P     D     N     L     Y     H
      1gcv_AD_0     P     W     N   R     Q     H     V     D     P     G     S     L     Y     H
      1a9w_AF_0     P     W     Q   R                                   D           N
      2rao_CB_0     P     W     Q   R                             H     D           N
      1cmy_AD_0     P     W     Q                                       Y           N
      1cmy_CB_0     P     W     Q   R                             H     Y
      1y8k_CB_0     P     W     Q   R     D
      2b7h_AD_0     P     W     Q   R     D           H
      2b7h_CB_0     P     W     Q   R     D           H     D           E     N
      2zlw_AD_0     P     W     Q   R     D     H     V     D           E     N
      2zlw_CB_0     P     W     Q   R     D           V     D           E     N           Y
      1jeb_AD_0           W     Q         D     H     V     D     P     E     N
      1jeb_CB_0     P     W     Q         D           H     D     P           N
      3d1a_CB_0     P     W     Q   R     E           H     D           E     N           Y
      3cy5_AD_0     P     W         Q           H           D           E     N           Y
      3cy5_CB_0     P     W     Q   R     E     L           D           E     N           Y
      3gou_AD_0     P     W     Q   R     D     H     V     D           E     N           Y
      3d17_AD_0     P     W     Q   R     E           H                 D           N
      1gcw_CB_0     P     W     N                                       D
      1hds_AD_0     P     W     Q   R           L           V     N     Q     N           Y     H
      1hds_CB_0     P     W     Q                                       N
      3bj1_CB_0           W     Q   R     G     H     V     D     P     D     N
      1ch4_AC_0     P     W     Q   R           R     V     D     P     V     N           Y
      1ch4_CA_0     P     W     Q   R     E     R     V     D     P     V     N           Y
      3hrw_CB_0   P     W     Q    R    D    H    V    D    P     E     N

Dist Members ResidueID Alignment
      1rq3_CB_0   36    37    39   40   43   97   98   99   100   101   102   105   145   146
      1a00_AD_0   36    37    39   40   43   97   98   99   100   101   102   105   145   146
      1hba_AD_0   36    37    39   40   43   97   98   99   100   101   102   105   145   146
      1y4f_AD_0   36    37    39   40   43   97   98   99   100   101   102   105   145   146
      1y4p_AD_0   36    37    39   40   43   97   98   99   100   101   102   105   145   146
      1ygf_AD_0         37    39   40   43   97   98   99   100   101   102   105   145   146
      1y5j_AD_0   36    37    39   40   43   97   98   99   100   101   102   105   145   146
      1y45_CB_0   36    37    39   40        97   98   99   100   101   102   105   145   146
      1y4b_CB_0   36    37    39   40        97   98   99   100   101   102   105   145   146
      1y45_AD_0   36    37    39   40   43   97   98   99   100   101         105   145   146
      1y4b_AD_0   36    37    39   40   43   97   98   99   100   101   102   105   145   146
      1y5k_AD_0   36    37    39   40   43   97   98   99   100   101   102   105   145   146
      1y7c_AD_0   36    37    39   40   43   97   98   99   100   101   102   105   145   146
      1hbh_AD_0               39             97   98   99   100   101   102   105   145   146
      1hbh_CB_0   36    37    39   40        97   98   99   100   101   102   105   145   146
      2aa1_AD_0   36    37    39   40        97   98   99   100   101   102   105   145   146
      1v4w_AD_0   36    37    39   40        97   98   99   100   101   102   105   145   146
      2r1h_AD_0   36    37    39   40   43   97   98   99   100   101   102   105   146   147
      1gcv_AD_0   36    37    39   40   43   87   88   89   90    91    92    95    135   136
      1a9w_AF_0   36    37    39   40                             99          102
      2rao_CB_0   36    37    39   40                       97    99          102
      1cmy_AD_0   36    37    39                                  99          102
      1cmy_CB_0   36    37    39   40                       97    99
      1y8k_CB_0   36    37    39   40   43
      2b7h_AD_0   36    37    39   40   43        97
      2b7h_CB_0   36    37    39   40   43        97   99         101   102
      2zlw_AD_0   36    37    39   40   43   97   98   99         101   102
      2zlw_CB_0   36    37    39   40   43        98   99         101   102         145
      1jeb_AD_0         37    39        43   97   98   99   100   101   102
      1jeb_CB_0   36    37    39        43        97   99   100         102
      3d1a_CB_0   36    37    39   40   43        97   99         101   102         145
      3cy5_AD_0   36    37         39        97        99         101   102         145
      3cy5_CB_0   36    37    39   40   43   96        99         101   102         145
      3gou_AD_0   36    37    39   40   43   97   98   99         101   102         145
      3d17_AD_0   36    37    39   40   43        97              99          102
      1gcw_CB_0   36    37    39                                  89
      1hds_AD_0   35    36    38   39        95        97   98    100   101         144   145
      1hds_CB_0   35    36    38                                  98
      3bj1_CB_0         37    39   40   43   97   98   99   100   101   102
      1ch4_AC_0   36    37    39   40        97   98   99   100   101   102         145
      1ch4_CA_0   36    37    39   40   43   97   98   99   100   101   102         145
      3hrw_CB_0   36    37    39   40   43   97   98   99   100   101   102
Alignment Occupancy       0.904 0.976 0.976 0.857 0.642 0.690 0.761 0.785 0.666 0.928 0.761 0.547 0.642 0.476
Gap in betw Columns       0     1     0     2     43,53 0     0,1   0     0,1   0     2     39,40

SLIM   RegEx        [HARLF][VH].{0,1}[DAV][PHAN].{0,1}[EDYVQNG][NS]..[LNI]
SLIM   Coverage           0.761904761904762
SLIM   PSSM Match Cutoff 24.2673130261202
SLIM   I=181997 Im=7926 Id=43 Idm=8
SLIM   PSSM p-value 0.000394116594134103

PSSM Listing
Pos 0 H(7.353) F(2.287) R(2.030) Y(1.476) A(0.996) L(0.983) N(0.400) D(0.363)   V(0.043) Q(-0.38) E(-0.52) K(-0.56)
T(-0.56) M(-0.73) I(-0.86) S(-1.05) W(-1.91) G(-2.06) P(-2.32) C(-2.33)
Gap (0)
Pos 1 H(5.871) V(3.558) I(2.558) M(0.567) L(0.561) Y(0.109) A(-0.41) N(-1.03)   D(-1.03) F(-1.27) C(-1.41) T(-1.57)
E(-1.57) Q(-1.57) R(-1.89) S(-2.03) K(-2.03) P(-2.27) G(-3.03) W(-3.03)
Gap (0,1)
Pos 2 D(5.696) E(1.698) T(0.702) N(0.701) A(0.353) V(0.292) S(-0.21) Q(-0.28)   I(-0.64) G(-1.21) P(-1.26) K(-1.26)
H(-1.28) M(-2.20) R(-2.20) L(-2.44) C(-2.66) F(-3.02) Y(-3.02) W(-4.14)
Gap (0)
Pos 3 P(6.440) H(4.956) N(2.297) T(0.490) A(0.418) D(-0.89) Y(-0.94) S(-1.02)   E(-1.23) Q(-1.23) K(-1.34) R(-1.84)
G(-2.02) M(-2.34) V(-2.42) C(-2.88) I(-3.19) L(-3.19) F(-3.42) W(-3.98)
Gap (0,1)
Pos 4 D(4.605) E(4.378) Y(3.957) N(2.380) G(2.281) Q(2.040) V(0.987) K(0.480)   T(0.259) F(0.015) I(0.014) H(0.001)
S(-0.11) R(-0.42) W(-0.93) A(-1.15) P(-1.18) M(-1.35) L(-1.70) C(-3.01)
Gap (0)
Pos 5 N(5.696) S(1.195) D(0.708) T(-0.21) G(-0.27) E(-0.27) Q(-0.27) K(-0.27)   R(-0.29) H(-1.27) A(-1.80) P(-2.21)
M(-2.21) Y(-2.27) C(-3.08) I(-3.21) L(-3.21) V(-3.21) F(-3.21) W(-4.21)
Gap (2)
Pos 6 N(3.649) L(3.160) V(2.160) I(1.497) M(1.176) F(-0.78) S(-1.13) D(-1.31)   A(-1.71) Y(-1.71) C(-1.76) T(-1.85)
Q(-1.86) R(-1.86) K(-1.86) E(-2.13) G(-2.26) W(-2.79) H(-2.85) P(-3.34)
//

===============================
 SLIM 143
===============================
ID           Globin.clust.0.3.4
Center             1xxt_BC_0
AvSimToCtr 0.718
AvRMSDToCtr 0.406 A
Size         291
NumDistinct 16
FracDDI            1
FracPeptides       0
FracIntra    0
Species           HOMO SAPIENS (11), MUSTELUS GRISEUS (1), ONCORHYNCHUS MYKISS (1), TREMATOMUS NEWNESI (1),
TREMATOMUS BERNACCHII (1), THUNNUS THYNNUS (1)
Conservation      0.6875

Members
      1a00_BC_0   1a00_DA_0   1y45_BC_0   1y45_DA_0   1y4b_BC_0   1y4b_DA_0   1y46_BC_0   1y46_DA_0   1hba_BC_0   1hba_DA_0
      1a01_BC_0   1a01_DA_0   1a0u_BC_0   1y0t_BC_0   1y35_BC_0   1y7z_BC_0   1y4v_BC_0   1y22_BC_0   1y4r_BC_0   1y5f_BC_0
      1y4q_BC_0   1hbb_BC_0   1xy0_BC_0   1xzv_BC_0   1y85_BC_0   1y31_BC_0   1y5j_BC_0   1xz5_BC_0   1y0d_BC_0   1y0c_BC_0
      1y83_BC_0   1y2z_BC_0   1kd2_DA_0   1a0z_BC_0   1a0z_DA_0   1xz2_DA_0   1rq3_BC_0   1y0w_BC_0   1xz2_BC_0   1rq3_DA_0
      1y0w_DA_0   1a0u_DA_0   1xxt_DA_0   1hbb_DA_0   1xy0_DA_0   1xzv_DA_0   1y85_DA_0   1y0t_DA_0   1y35_DA_0   1y7z_DA_0
      1y4v_DA_0   1y22_DA_0   1y5f_DA_0   1y4r_DA_0   1y4q_DA_0   1y31_DA_0   1xz5_DA_0   1y0c_DA_0   1y83_DA_0   1y0d_DA_0
      1y2z_DA_0   1y5j_DA_0   1hda_BC_0   1hda_DA_0   1b86_BC_0   1hga_BC_0   1hgc_BC_0   1kd2_BC_0   2hbs_FG_0   1bab_DA_0
      1dxu_DA_0   1dxv_DA_0   1bz0_DA_0   1bz1_DA_0   1bzz_DA_0   1qsh_DA_0   1dxt_DA_0   1o1o_DA_0   2dn2_DA_0   1gbu_DA_0
      1g9v_DA_0   1k0y_DA_0   1vwt_DA_0   1hdb_DA_0   1cls_DA_0   1c7b_DA_0   1j7w_BC_0   1qi8_BC_0   1j7s_BC_0   2dxm_DA_0
      1o1k_BC_0   1o1k_DA_0   4hhb_DA_0   1y7g_BC_0   1y7g_DA_0   1j7s_DA_0   1a3n_DA_0   2w6v_BC_0   2d60_DA_0   2d5z_DA_0
      6hbw_DA_0   1bab_BC_0   1bz0_BC_0   1bz1_BC_0   1dxt_BC_0   1dxu_BC_0   1dxv_BC_0   1bzz_BC_0   1qsh_BC_0   1g9v_BC_0
      1k0y_BC_0   1o1o_BC_0   2dn2_BC_0   1vwt_BC_0   1gbu_BC_0   1qi8_DA_0   1hdb_BC_0   2dxm_BC_0   1coh_BC_0   2hhb_BC_0
      1gli_BC_0   1gli_DA_0   3hhb_BC_0   3hhb_DA_0   1coh_DA_0   2hhb_DA_0   4hhb_BC_0   1gbv_BC_0   2hbs_BC_0   2hbs_DA_0
      2hbs_HE_0   1a3n_BC_0   2w6v_DA_0   2d60_BC_0   1j7y_BC_0   2w72_BC_0   1thb_BC_0   3dut_DA_0   2hhe_DA_0   1c7b_BC_0
      1o1j_BA_0   1o1m_BA_0   1o1l_BA_0   1j3y_BC_0   1j3z_BC_0   1j3y_DA_0   1j3y_HE_0   1j3z_HE_0   1j3z_DA_0   1qsi_BC_0
      1qsi_DA_0   1j3y_FG_0   1j3z_FG_0   1thb_DA_0   1y0a_BC_0   1y0a_DA_0   1y09_BC_0   1y09_DA_0   1y5k_BC_0   1y5k_DA_0
      1b86_DA_0   1hga_DA_0   1hgc_DA_0   1hgb_DA_0   1gzx_BC_0   1hgb_BC_0   1ye2_BC_0   1yh9_BC_0   1yhe_BC_0   1ye2_DA_0
      1yhe_DA_0   1yh9_DA_0   1j7w_DA_0   1uiw_BC_0   1uiw_FG_0   1uiw_HE_0   1uiw_DA_0   6hbw_BC_0   1cls_BC_0   2hhd_BC_0
      1j7y_DA_0   2w72_DA_0   1r1y_BC_0   2hhe_BC_0   2hhd_DA_0   2yrs_BC_0   2yrs_OI_0   2yrs_DA_0   2yrs_KM_0   1bij_DA_0
      1y7c_BC_0   1y7d_BC_0   1y7c_DA_0   1y7d_DA_0   1yih_BC_0   1yih_DA_0   1gbv_DA_0   1dke_BC_0   1dke_DA_0   3dut_BC_0
      1j40_BC_0   1j41_BC_0   1j40_FG_0   1j41_FG_0   2d5z_BC_0   1rps_BC_0   1rq4_BC_0   1rps_DA_0   1rq4_DA_0   1nih_DA_0
      1nih_BC_0   1ygf_DA_0   1xzu_BC_0   1xzu_DA_0   1a3o_DA_0   1xye_BC_0   1xz4_BC_0   1xye_DA_0   1xz4_DA_0   1lfl_BC_0
      1lfl_SP_0   1lfl_DA_0   1lfl_QR_0   1fdh_GB_0   1fdh_HA_0   1gzx_DA_0   1ygf_BC_0   1y4f_BC_0   1y4f_DA_0   1y4g_BC_0
      1y4g_DA_0   1y4p_BC_0   1y4p_DA_0   1ye0_DA_0   1ye0_BC_0   1r1y_DA_0   1hbs_BC_0   1bij_BC_0   1hbs_HE_0   1hbs_FG_0
      1a3o_BC_0   1xz7_BC_0   1xz7_DA_0   1j40_DA_0   1j41_DA_0   1j40_HE_0   1j41_HE_0   1hbh_BC_0   1hbh_DA_0   2aa1_BC_0
      2aa1_DA_0   2h8d_BC_0   2h8d_DA_0   2h8f_BC_0   2h8f_DA_0   1v4w_BC_0   1v4w_DA_0   1v4x_DA_0   1v4x_BC_0   2r1h_BC_0
      3bom_BC_0   3bom_DA_0   2r1h_DA_0   1hbs_DA_0   1gcv_BC_0   1gcv_DA_0   1rqa_BC_0   1yeo_DA_0   1yev_BC_0   1yev_DA_0
      1yeu_DA_0   1yie_DA_0   1yeo_BC_0   1yeu_BC_0   1yie_BC_0   1rqa_DA_0   1yg5_BC_0   1yeq_BC_0   1yeq_DA_0   1ygd_BC_0
      1ygd_DA_0   1yhr_BC_0   1yhr_DA_0   1y8w_BC_0   1yen_DA_0   1yg5_DA_0   3d4x_BC_0   1y8w_DA_0   3d4x_DA_0   1fn3_BC_0
      1fn3_DA_0

Peptides

PartnerDomains
      Globin
(1xxt_BC_0,1xzv_BC_0,1xz5_BC_0,1y0c_BC_0,1vwt_DA_0,1gli_BC_0,1y0a_BC_0,1y09_BC_0,1r1y_BC_0,1a3o_DA_0,1hbh_BC_0,2aa1
_BC_0,1v4w_BC_0,2r1h_BC_0,1gcv_BC_0,1y8w_BC_0)
      BBE (2r1h_BC_0)

Dist Members Intf Alignment
        1xxt_BC_0   T     T     Y     P     L     R    V    D     P    V     N    Y     R
        1xzv_BC_0   T     T     Y     P     L     R    V    D     A    V     N    Y     R
        1xz5_BC_0   T     T     Y     P     A     R    V    D     P    V     N    Y     R
        1y0c_BC_0   T     T     Y     P     L     R    V    D     P    V     N    F     R
        1vwt_DA_0   T     T     Y     P     L     R    V    D     P    W     N    Y     R
        1gli_BC_0   W     T     Y     P     L     R    V    D     P    V     N    Y     R
        1y0a_BC_0   T     T     Y     P     L     R    V    D     P    V     N    A     R
        1y09_BC_0   T     T     Y     P     L     R    V    D     P    V     A    Y     R
        1r1y_BC_0   T     T     Y     P     L     R    V    A     P    V     N    Y     R
        1a3o_DA_0   T     T     H     P     L     R    V    D     P    V     N    Y     R
        1hbh_BC_0   Q     T     Y     S     L     R    V    D     P    A     N    Y     R
        2aa1_BC_0   Q     I     Y     S     L     R    V    D     P    S     N    Y     R
        1v4w_BC_0   Q     T     Y     S     M     R    V    D     P    S     N    Y     R
        2r1h_BC_0   Q     A     Y     S     L     R    V    D     P    T     N    Y     R
        1gcv_BC_0   G     S     Y           L     L    V    D     P    Q     N    Y     R
        1y8w_BC_0   T     T     Y     P     L     A         D          V     N    Y     R

Dist Members ResidueID Alignment
      1xxt_BC_0   38    41    42      44    91    92   93   94    95   96    97   140   141
      1xzv_BC_0   38    41    42      44    91    92   93   94    95   96    97   140   141
      1xz5_BC_0   38    41    42      44    91    92   93   94    95   96    97   140   141
      1y0c_BC_0   38    41    42      44    91    92   93   94    95   96    97   140   141
      1vwt_DA_0   38    41    42      44    91    92   93   94    95   96    97   140   141
      1gli_BC_0   38    41    42      44    91    92   93   94    95   96    97   140   141
      1y0a_BC_0   38    41    42      44    91    92   93   94    95   96    97   140   141
      1y09_BC_0   38    41    42      44    91    92   93   94    95   96    97   140   141
      1r1y_BC_0   38    41    42      44    91    92   93   94    95   96    97   140   141
      1a3o_DA_0   38    41    42      44    91    92   93   94    95   96    97   140   141
      1hbh_BC_0   38    41    42      44    92    93   94   95    96   97    98   141   142
      2aa1_BC_0   38    41    42      44    92    93   94   95    96   97    98   141   142
      1v4w_BC_0   39    42    43      45    93    94   95   96    97   98    99   142   143
      2r1h_BC_0   38    41    42      44    92    93   94   95    96   97    98   141   142
      1gcv_BC_0   38    41    42            91    92   93   94    95   96    97   139   140
      1y8w_BC_0   38    41    42      44    91    92        94         96    97   140   141

Alignment Occupancy       1     1     1     0.937 1    1    0.937 1    0.937 1    1     1     1
Gap in betw Columns       2     0     1     46,47 0    0    0     0    0     0    41,42 0

SLIM   RegEx        [LAM][RAL]V[DA][PA][VSAQTW][NA]
SLIM   Coverage           0.9375
SLIM   PSSM Match Cutoff 21.6590405020052
SLIM   I=181997 Im=5941 Id=43 Idm=2
SLIM   PSSM p-value 0.246824338734378

PSSM Listing
Pos 0 L(3.876) V(2.867) M(2.757) I(1.895) A(1.323) F(-0.05) C(-0.89) Y(-1.04) S(-1.16) Q(-1.59) T(-1.80) R(-1.80)
K(-1.80) W(-1.93) G(-2.50) P(-2.59) N(-2.59) E(-2.59) H(-2.80) D(-3.59)
Gap (0)
Pos 1 R(4.866) K(1.871) A(1.323) L(1.268) Q(0.879) V(0.268) N(-0.10) E(-0.10) H(-0.12) M(-0.21) I(-0.63) S(-0.69)
T(-1.04) G(-1.70) Y(-1.89) P(-1.93) C(-2.04) D(-2.05) F(-2.16) W(-2.89)
Gap (0)
Pos 2 V(3.935) I(2.935) M(0.935) L(0.935) A(-0.06) C(-1.06) F(-1.06) Y(-1.06) S(-2.06) T(-2.06) P(-2.06) E(-2.06)
Q(-2.06) K(-2.06) G(-3.06) N(-3.06) D(-3.06) H(-3.06) R(-3.06) W(-3.06)
Gap (0)
Pos 3 D(5.935) E(1.938) A(1.263) T(0.944) N(0.944) S(0.102) Q(-0.04) G(-0.89) P(-1) K(-1) H(-1.04) R(-1.89) C(-2.21)
M(-2.66) I(-2.66) V(-2.89) F(-2.89) Y(-2.89) L(-3.21) W(-3.89)
Gap (0)
Pos 4 P(6.866) A(1.317) T(0.876) S(-0.70) N(-1.06) E(-1.06) Q(-1.06) K(-1.06) D(-1.10) G(-1.70) R(-1.95) M(-1.95)
H(-2.06) V(-2.06) C(-2.24) I(-2.70) L(-2.70) Y(-2.95) F(-3.70) W(-3.95)
Gap (0)
Pos 5 W(8.227) V(3.531) I(2.534) Q(2.259) S(1.989) A(1.487) T(1.367) M(0.629) L(0.567) E(-0.27) Y(-0.28) N(-0.65)
K(-0.75) F(-0.82) G(-0.90) D(-0.92) C(-0.98) P(-1.05) R(-1.21) H(-1.51)
Gap (0)
Pos 6 N(5.935) A(1.263) S(1) D(0.938) G(0) T(-0.04) E(-0.04) Q(-0.04) R(-0.04) K(-0.04) H(-1.04) P(-1.89) M(-1.89)
Y(-2) C(-2.21) I(-2.66) L(-2.66) V(-2.89) F(-2.89) W(-3.89)
//

===============================
 SLIM 144
===============================
ID           Glutaredoxin.clust.0.15.1
Center             1nw2_HE_2
AvSimToCtr 0.451
AvRMSDToCtr 1.044 A
Size         17
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (1), CHLAMYDOMONAS REINHARDTII (1), SACCHAROMYCES CEREVISIAE (1), ALICYCLOBACILLUS
ACIDOCALDARIUS (1)
Conservation       0.25

Members
      1ep8_AB_1 1ep8_BA_1 1nsw_BD_1 1nsw_DB_1 1nw2_AD_2 1nw2_CB_2 1nw2_EH_2 1nw2_GF_2 1nw2_BC_2 1nw2_DA_2
      1nw2_FG_2 2hxk_AB_1 2ifq_AB_1 2hxk_BA_1 2ifq_BA_1 3ed3_AB_1 3ed3_BA_1

Peptides

PartnerDomains
        Thioredoxin (1nw2_HE_2,1ep8_AB_1,2hxk_AB_1,3ed3_AB_1)
        Glutaredoxin (1nw2_HE_2,1ep8_AB_1,2hxk_AB_1,3ed3_AB_1)

Dist Members Intf   Alignment
      1nw2_HE_2     A     W     P      R    V     D     P        T    S      I     M     S     I
      1ep8_AB_1     T     W     P      K    V     D     A        A    E      I     T     A     M
      2hxk_AB_1     T     W     P      K    V     D     Q        A    S      V     K     C     M
      3ed3_AB_1     W           H           C     D     K        C    A      V     N     G     F

Dist Members ResidueID Alignment
      1nw2_HE_2   27    28    31       33   57    58    61       64   65     69    70    71    72
      1ep8_AB_1   34    35    38       40   64    65    68       71   72     76    77    78    79
      2hxk_AB_1   30    31    34       36   59    60    63       66   67     71    72    73    74
      3ed3_AB_1   58          61            87    88    93       96   97     101   102   103   104

Alignment Occupancy       1     0.75   1    0.75 1      1        1    1      1     1     1     1     1
Gap in betw Columns       0     2      1    22,23 0     2,4      2    0      3     0     0     0

SLIM   RegEx        [VC]D.{2,4}[AQKP]..[ATC][SAE].{3}[IV][TMNK][ASCG][MFI]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 26.4683163677426
SLIM   I=181997 Im=5974 Id=43 Idm=2
SLIM   PSSM p-value 0.247663182204889

PSSM Listing
Pos 0 C(7.613) V(3.714) I(2.718) M(0.756) L(0.756) A(0) F(-1.17) Y(-1.17) S(-1.64) T(-1.64) P(-2.17) Q(-2.17) K(-
2.17) E(-2.24) W(-2.64) G(-3) N(-3) D(-3) H(-3) R(-3)
Gap (0)
Pos 1 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (2,4)
Pos 2 P(5.614) Q(3.636) K(3.636) A(2.633) E(0.997) R(0.975) S(0.240) T(0.240) N(-0.37) D(-0.75) M(-0.75) H(-0.89)
G(-1.04) C(-1.24) L(-1.75) Y(-1.75) I(-2.04) V(-2.17) F(-2.75) W(-2.75)
Gap (2)
Pos 3 C(7.613) A(3.319) T(2.633) S(0.756) G(0.175) P(-0.13) D(-0.27) N(-0.80) Q(-0.80) K(-0.80) E(-0.82) M(-1) H(-
1.10) I(-1.17) L(-1.17) R(-1.24) V(-1.64) F(-2) Y(-2) W(-2.64)
Gap (0)
Pos 4 E(3.629) S(3.340) A(2.714) Q(0.891) D(0.867) T(0.531) N(0.531) K(0.240) G(-0.24) R(-0.64) H(-0.75) C(-0.82)
P(-1) M(-1.17) I(-1.75) L(-1.75) Y(-2) V(-2.17) F(-2.17) W(-3)
Gap (3)
Pos 5 I(3.620) V(3.355) L(1.620) M(1) A(-0.37) F(-0.37) C(-1) Y(-1) S(-2) T(-2) P(-2.37) E(-2.37) Q(-2.37) K(-2.37)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.37)
Gap (0)
Pos 6 N(4.618) K(3.629) M(3.619) T(2.656) R(0.824) L(0.656) S(0.531) D(0.380) Q(0.357) E(0.193) G(-0.02) P(-0.17)
I(-0.30) H(-0.75) A(-1.17) F(-1.17) C(-1.56) Y(-1.64) W(-2.10) V(-2.37)
Gap (0)
Pos 7 C(7.613) G(4.618) A(2.696) S(2.685) T(0.433) N(-0.20) V(-0.89) D(-0.94) Q(-0.94) K(-0.94) E(-0.96) M(-1.24)
P(-1.46) R(-1.46) I(-1.50) L(-1.50) H(-1.75) F(-2.17) Y(-2.17) W(-2.37)
Gap (0)
Pos 8 F(4.621) M(4.319) I(2.725) L(1.756) Y(1.667) W(-0.13) V(-0.17) Q(-0.64) C(-1.17) A(-1.17) S(-1.37) T(-1.37)
R(-1.56) K(-1.56) H(-1.75) N(-2.37) E(-2.37) P(-2.46) D(-3) G(-3.17)
//

===============================
 SLIM 145
===============================
ID           Glyco_hydro_20b.clust.0.15.1
Center             1np0_AB_0
AvSimToCtr 0.587
AvRMSDToCtr 0.659 A
Size         17
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (4)
Conservation       1

Members
      1nou_AB_0 1now_AB_0 1nou_BA_0 1np0_BA_0 1now_BA_0 1o7a_AC_0 1o7a_BD_0 1o7a_CA_0 1o7a_DB_0 2gjx_BD_0
      2gjx_CA_0 2gjx_GE_0 2gjx_FH_0 2gjx_AC_0 2gjx_EG_0 2gjx_HF_0 2gjx_DB_0

Peptides

PartnerDomains
      Glyco_hydro_20 (1np0_AB_0,2gjx_BD_0,2gjx_CA_0,2gjx_FH_0)

Dist Members Intf   Alignment
      1np0_AB_0     Y     Q     I   P       S     L     S      V     Y     T      P     N     D     R
      2gjx_BD_0     Y     E     F   P       N                  I           T      A     Q     D
      2gjx_CA_0     Y     E     F   P       N                  I     Y     T      A     Q     D
      2gjx_FH_0     Y     E     F   P       N           T      I     Y     T      A     Q     D

Dist Members ResidueID Alignment
      1np0_AB_0   213   247   249   252     261   262   263    265   266   267    268   269   270   272
      2gjx_BD_0   180   214   216   219     228                233         235    236   237   238
      2gjx_CA_0   180   214   216   219     228                233   234   235    236   237   238
      2gjx_FH_0   180   214   216   219     228         231    233   234   235    236   237   238

Alignment Occupancy       1     1   1       1     1     0.25   0.5   1     0.75   1     1     1     1     0.25
Gap in betw Columns       33    1     2     8        1,2   1   0   0    0     0     0

SLIM   RegEx        [NS].{1,2}[ST].[IV]YT[AP][QN]D
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 21.4246246910136
SLIM   I=181997 Im=5035 Id=3 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 N(5.714) S(2.752) D(0.827) T(0.357) G(0) E(0) Q(0) K(0) R(-0.17) A(-0.24) H(-1) P(-1.64) M(-1.64) Y(-2) C(-
2.04) I(-2.64) L(-2.64) V(-2.64) F(-2.64) W(-3.64)
Gap (1,2)
Pos 1 S(2.662) T(2.662) G(-0.07) N(-0.07) D(-0.07) P(-0.25) A(-0.25) E(-0.69) Q(-0.69) K(-0.69) H(-1.07) C(-1.69)
R(-1.69) M(-1.69) I(-2.69) L(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
Gap (1)
Pos 2 I(3.827) V(2.752) L(1.827) M(1) F(-0.17) A(-0.64) C(-1) Y(-1) S(-2) T(-2) P(-2.64) E(-2.64) Q(-2.64) K(-2.64)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.64)
Gap (0)
Pos 3 Y(6.712) F(2.712) H(1.712) W(1.712) Q(-1.28) M(-1.28) I(-1.28) L(-1.28) V(-1.28) C(-2.28) S(-2.28) T(-2.28)
A(-2.28) N(-2.28) E(-2.28) R(-2.28) K(-2.28) P(-3.28) G(-3.28) D(-3.28)
Gap (0)
Pos 4 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 5 P(5.614) A(3.714) S(0.756) T(-0.04) G(-0.24) C(-0.27) N(-1) E(-1) Q(-1) K(-1) R(-1.17) M(-1.17) I(-1.24) L(-
1.24) D(-1.64) H(-2) V(-2) Y(-2.17) F(-2.24) W(-3.17)
Gap (0)
Pos 6 Q(4.714) N(4.621) E(1.756) R(0.827) K(0.827) S(0.357) D(0.357) T(0) H(-0.17) M(-0.24) G(-1.04) P(-1.17) A(-
1.17) Y(-1.17) L(-2.17) V(-2.17) W(-2.24) C(-3) I(-3) F(-3)
Gap (0)
Pos 7 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
//

===============================
 SLIM 146
===============================
ID           Glycos_trans_3N.clust.0.3.1
Center             1o17_AD_0
AvSimToCtr 0.576
AvRMSDToCtr 0.724 A
Size         31
NumDistinct 6
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species           THERMUS THERMOPHILUS HB8 (1), THERMUS THERMOPHILUS (1), MYCOBACTERIUM TUBERCULOSIS (1),
PECTOBACTERIUM CAROTOVORUM (1), SULFOLOBUS SOLFATARICUS (1)
Conservation      0.2

Members
      1kgz_AB_0 1kgz_BA_0 1khd_AD_0 1khd_DA_0 1khd_BC_0 1khd_CB_0 1zxy_AD_0 1zyk_AD_0 2gvq_AD_0 1o17_BC_0
      2gvq_BC_0 1zxy_BC_0 1zyk_BC_0 1o17_CB_0 1zxy_CB_0 1zyk_CB_0 2gvq_CB_0 1o17_DA_0 1zxy_DA_0 1zyk_DA_0
      2gvq_DA_0 1v8g_AB_0 2elc_BC_0 1v8g_BA_0 2elc_AD_0 2elc_DA_0 2elc_CB_0 1vqu_AB_0 1vqu_BA_0 2bpq_AB_0
      2bpq_BA_0

Peptides

PartnerDomains
      Glycos_trans_3N (1o17_AD_0,1kgz_AB_0,1vqu_AB_0)

Dist Members Intf   Alignment
      1o17_AD_0     L     I     N     K     E     I     L    S     A    V     A     R     M     K     D     N       V
      T     L       G     I
      1kgz_AB_0     L     F           S     D     S          A     A    I     S     K     M     R                   V
      Q     L       K     T
      1v8g_AB_0                             P     V          A     G    V     A           L                         V
      E     L       G     V
      2elc_BC_0                             P     V          A     G    V     A           L                 P       V
      E     L       G     V
      1vqu_AB_0     L     I                 P     E          G     A    T     A     N     F     K           T       L
      T     L       R     I
      2bpq_AB_0           L                 P     A          A     A    V     A     T     M     K                   V
      E     I       G     V

Dist Members ResidueID Alignment
      1o17_AD_0   10    11    12      13    35    36    37   39    40   43    44    46    47    48    83    162
      163   166   167   168   169
      1kgz_AB_0   20    21            23    45    46         49    50   53    54    56    57    58
      177   180   181   182   183
      1v8g_AB_0                             32    33         36    37   40    41          44
      163   166   167   168   169
      2elc_BC_0                             32    33         36    37   40    41          44                162
      163   166   167   168   169
      1vqu_AB_0   22    23                  47    48         51    52   55    56    58    59    60          187
      188   191   192   193   194
      2bpq_AB_0         34                  59    60         63    64   67    68    70    71    72
      192   195   196   197   198

Alignment Occupancy       0.5   0.666 0.166 0.333 1     1    0.166 1    1     1     1     0.666 1     0.666 0.166
      0.5   1     1       1     1     1
Gap in betw Columns       0     23,24 0     2     0     2     0     1    0    0     107,113     0     2     0        0
      0

SLIM   RegEx        [PDE][VASIE]..[ASG][AG]..[VTI][AS].[TNKR][MLF][KR]
SLIM   Coverage           0.833333333333333
SLIM   PSSM Match Cutoff 22.7806191940799
SLIM   I=181997 Im=6376 Id=9 Idm=1
SLIM   PSSM p-value 0.237050559887498

PSSM Listing
Pos 0 P(6.594) D(4.229) E(3.266) T(0.888) Q(0.496) N(-0.14) K(-0.27) S(-0.54) A(-1.11) H(-1.14) R(-1.27) G(-1.74)
M(-2.11) V(-2.23) Y(-2.74) I(-3) C(-3.11) L(-3.11) F(-3.54) W(-3.74)
Gap (0)
Pos 1 E(3.219) V(2.928) I(2.765) A(2.303) S(2.281) L(0.801) Q(0.414) M(0.408) D(0.368) T(-0.28) K(-0.30) N(-0.34)
C(-0.87) G(-0.97) F(-1.07) R(-1.15) H(-1.28) Y(-1.37) P(-1.43) W(-3)
Gap (2)
Pos 2 G(4.220) A(3.611) S(2.405) T(0.140) C(-0.30) N(-0.32) E(-0.83) Q(-0.83) K(-0.83) P(-1.11) R(-1.11) D(-1.14)
M(-1.15) V(-1.27) I(-1.30) L(-1.30) H(-1.74) F(-2.11) Y(-2.11) W(-2.74)
Gap (0)
Pos 3 G(4.906) A(3.603) S(0.763) T(0.140) C(-0.38) V(-0.85) P(-1.23) N(-1.23) E(-1.23) Q(-1.23) R(-1.23) K(-1.23)
M(-1.33) I(-1.38) L(-1.38) D(-1.54) H(-2) F(-2.23) Y(-2.23) W(-2.54)
Gap (2)
Pos 4 V(3.607) I(3.114) T(2.220) L(1.120) M(0.844) A(-0.23) S(-0.56) P(-0.59) D(-0.70) G(-0.71) F(-0.83) C(-1) Y(-
1.11) E(-1.32) Q(-1.32) K(-1.32) N(-1.56) H(-1.56) R(-2.27) W(-3)
Gap (0)
Pos 5 A(3.827) S(2.430) G(0) C(-0.11) T(-0.27) N(-0.27) E(-0.74) Q(-0.74) K(-0.74) P(-1) R(-1) M(-1) I(-1.11) L(-
1.11) D(-1.27) H(-1.74) V(-2) F(-2) Y(-2) W(-3)
Gap (1)
Pos 6 N(4.215) K(3.269) R(3.265) T(2.250) Q(0.214) S(0.125) D(-0.01) E(-0.04) G(-0.40) P(-0.58) H(-0.78) A(-1.57)
M(-1.57) Y(-2.40) C(-2.45) L(-2.57) I(-3.04) V(-3.04) F(-3.04) W(-3.57)
Gap (0)
Pos 7 M(4.341) F(4.220) L(3.093) V(1.920) I(1.383) Y(1.295) W(-0.38) Q(-0.59) C(-1.11) A(-1.11) S(-1.37) T(-1.37)
R(-1.43) K(-1.43) H(-1.92) N(-2.37) E(-2.37) P(-2.43) G(-3.23) D(-3.23)
Gap (0)
Pos 8 K(4.323) R(3.347) Q(0.594) E(0.422) N(-0.40) S(-0.57) T(-0.57) H(-1.04) A(-1.40) M(-1.40) P(-1.57) D(-1.57)
G(-2.40) L(-2.40) Y(-2.40) C(-3.40) I(-3.40) V(-3.40) F(-3.40) W(-3.40)
//

===============================
 SLIM 147
===============================
ID          Glycos_transf_3.clust.0.2.1
Center            2dsj_BA_1
AvSimToCtr 0.438
AvRMSDToCtr 1.397 A
Size         5
NumDistinct 5
FracDDI           1
FracPeptides      0
FracIntra    0
Species           THERMUS THERMOPHILUS HB8 (2), MYCOBACTERIUM TUBERCULOSIS (1), SULFOLOBUS SOLFATARICUS (1),
GEOBACILLUS STEAROTHERMOPHILUS (1)
Conservation      0.4

Members
      1brw_BA_1 2dsj_AB_1 1o17_DA_1 2elc_CB_1 2bpq_AB_1

Peptides

PartnerDomains
      Glycos_trans_3N (2dsj_BA_1,1brw_BA_1,1o17_DA_1,2elc_CB_1,2bpq_AB_1)

Dist Members Intf   Alignment
      2dsj_BA_1     V     I     R     R     Y        Q    A
      1brw_BA_1     V     I     A     R     Y        Q    A
      1o17_DA_1     N     L     K     I     I        L    A
      2elc_CB_1     K     I     L           V        R    G
      2bpq_AB_1     W     L     G     T     A        Q    A

Dist Members ResidueID Alignment
      2dsj_BA_1   4     7     8       11    36       37   40
      1brw_BA_1   4     7     8       11    36       37   40
      1o17_DA_1   4     7     8       11    36       37   40
      2elc_CB_1   5     8     9             33       34   37
      2bpq_AB_1   27    31    32      35    60       61   64

Alignment Occupancy       1     1     1     0.8      1    1    1
Gap in betw Columns       2,3   0     2     24       0    2

SLIM   RegEx        [VWNK].{2,3}[IL][AKRGL]..[RTI]
SLIM   Coverage           0.8
SLIM   PSSM Match Cutoff 19.1874499397788
SLIM   I=181997 Im=3500 Id=9 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 W(9.390) N(4.393) K(3.399) V(3.085) I(2.087) R(0.535) Y(0.518) M(0.232) L(0.140) Q(-0.19) S(-0.21) E(-0.21)
F(-0.34) D(-0.44) A(-0.67) T(-0.76) G(-1.29) C(-1.63) H(-1.63) P(-1.84)
Gap (2,3)
Pos 1 I(3.575) L(3.268) V(2.268) M(1.523) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2.47) R(-2.47) K(-2.47) W(-2.47)
P(-3) N(-3) E(-3) H(-3) D(-3.29) G(-4)
Gap (0)
Pos 2 G(4.393) R(3.443) K(3.443) A(2.428) L(2.402) V(1.450) M(0.535) I(0.454) Q(0.194) S(0.043) T(-0.08) E(-0.15)
N(-0.67) H(-1.08) C(-1.19) F(-1.35) P(-1.55) D(-1.58) Y(-1.80) W(-2.47)
Gap (2)
Pos 3 R(4.085) T(2.406) I(2.394) K(1.152) L(0.444) Q(0.260) M(-0.26) S(-0.33) N(-0.49) E(-0.49) H(-0.49) P(-0.49)
D(-0.49) G(-0.50) V(-0.52) A(-1.22) F(-1.39) C(-1.78) Y(-1.86) W(-3.22)
//

===============================
 SLIM 148
===============================
ID           Gp_dh_C.clust.0.15.2
Center             1u8f_OQ_1
AvSimToCtr 0.625
AvRMSDToCtr 0.449 A
Size         125
NumDistinct 7
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (1), ESCHERICHIA COLI (1), THERMUS AQUATICUS (1), LEISHMANIA MEXICANA (1),
TRYPANOSOMA CRUZI (1)
Conservation       0.2

Members
      1a7k_AC_2   1a7k_CA_2   1a7k_BD_2   1a7k_DB_2   1gyp_AC_2   1gyp_DB_2   1gyp_BD_2   1gyp_CA_2   1k3t_AC_1   1k3t_DB_1
      1i32_AC_2   1i33_AC_2   1k3t_BD_1   1ml3_BD_1   1k3t_CA_1   1qxs_CA_1   1ml3_DB_1   1qxs_AC_1   1qxs_DB_1   3ids_AC_1
      3ids_DB_1   3ids_BD_1   1qxs_BD_1   3dmt_AC_1   3dmt_BD_1   3dmt_CA_2   3dmt_DB_1   1dc5_AB_1   1dc5_BA_1   1dc6_AB_1
      1dc6_BA_1   2b4t_QO_1   2vyn_AB_1   2vyn_BA_1   2vyv_AB_1   2vyv_BA_1   2vyn_CD_1   2vyv_CD_1   1ihx_AB_2   1ihx_CD_2
      1ihy_AB_2   1ihy_DC_2   1ihy_BA_2   1j0x_OQ_2   1j0x_QO_2   1u8f_PR_1   1j0x_PR_2   1j0x_RP_2   1u8f_RP_1   1u8f_QO_1
      2vyn_DC_2   2vyv_DC_2   1vsu_AC_1   1vsu_CA_1   1vsu_DB_1   1vsv_AC_1   1vsu_BD_1   3cif_AC_1   3cif_CA_1   3cif_DB_1
      3cif_BD_1   1vsv_BD_1   1vsv_CA_1   3e5r_AO_1   3e5r_BC_1   3e5r_CB_1   3e5r_OA_1   1cer_AC_1   1cer_OQ_1   1cer_CA_1
      1cer_QO_1   1cer_DB_1   1cer_RP_1   2g82_AC_1   2g82_DB_1   2g82_OQ_1   2g82_PR_1   2g82_RP_1   2g82_BD_1   2g82_QO_1
      2g82_CA_1   3hja_AC_2   3hja_BD_2   3hja_CA_2   3hja_DB_2   3doc_AD_3   3doc_CB_3   3doc_BC_3   3doc_DA_3   1dbv_OQ_2
      3dbv_PR_2   1dbv_PR_2   4dbv_RP_2   1dbv_RP_2   4dbv_OQ_2   4dbv_QO_2   4dbv_PR_2   1dbv_QO_2   2dbv_PR_2   2dbv_RP_2
      1gd1_OQ_2   1gd1_QO_2   1gd1_PR_2   1gd1_RP_2   1npt_QO_2   1nq5_QO_2   1npt_RP_2   1nq5_OQ_2   1nqo_OQ_2   1nq5_AC_2
      1nqo_AC_2   3dbv_OQ_2   2dbv_QO_2   2gd1_OQ_2   2gd1_PR_2   2gd1_QO_2   2gd1_RP_2   3dbv_RP_2   3cmc_OQ_2   3cmc_PR_2
      3cmc_RP_2   3cmc_QO_2   2duu_OQ_1   2duu_RP_1   2duu_PR_1

Peptides

PartnerDomains
      Gp_dh_N (1u8f_OQ_1,1a7k_AC_2,1k3t_AC_1,1dc5_AB_1,3e5r_AO_1,1cer_AC_1,3doc_AD_3)
       Semialdhyde_dh (3doc_AD_3)
       F420_oxidored (3doc_AD_3)
       DapB_N (1a7k_AC_2)

Dist Members Intf   Alignment
      1u8f_OQ_1     Y     Q     Y    D      S
      1a7k_AC_2     Y     K     H    D      T
      1k3t_AC_1     Y     R     Y    D      T
      1dc5_AB_1     Y     K     Y    D      S
      3e5r_AO_1     Y     K     Y    D      T
      1cer_AC_1     H     K     Y    D      S
      3doc_AD_3     H     R     Y    D      S

Dist Members ResidueID Alignment
      1u8f_OQ_1   45    48    49     50     51
      1a7k_AC_2   48    51    52     53     54
      1k3t_AC_1   48    51    52     53     54
      1dc5_AB_1   42    45    46     47     48
      3e5r_AO_1   45    48    49     50     51
      1cer_AC_1   42    45    46     47     48
      3doc_AD_3   45    48    49     50     51

Alignment Occupancy       1     1    1      1     1
Gap in betw Columns       2     0    0      0

SLIM   RegEx        [YH]..[KRQ][YH]D[ST]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 19.4414717616854
SLIM   I=181997 Im=6335 Id=100 Idm=6
SLIM   PSSM p-value 0.0758655518982803

PSSM Listing
Pos 0 H(6.753) Y(6.666) F(2.670) W(1.670)   N(-0.13) D(-0.20) Q(-0.60) T(-0.96) E(-0.96) R(-0.96) M(-1.19) V(-1.19)
I(-1.28) L(-1.28) S(-1.60) K(-1.60) A(-2)   C(-2.19) P(-2.60) G(-2.60)
Gap (2)
Pos 1 K(4.469) R(3.850) Q(3.158) E(1.062)   N(0) S(-0.19) T(-0.19) H(-0.44) M(-0.78) D(-0.93) A(-1) P(-1.19) Y(-1.78)
G(-2) L(-2) V(-2.78) W(-2.78) C(-3) I(-3)   F(-3)
Gap (0)
Pos 2 Y(6.846) H(6.068) F(2.848) W(1.848)   N(-0.68) Q(-0.78) D(-0.84) M(-1.09) V(-1.09) I(-1.13) L(-1.13) T(-1.35)
E(-1.35) R(-1.35) S(-1.78) K(-1.78) A(-2)   C(-2.09) P(-2.78) G(-2.78)
Gap (0)
Pos 3 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1)   G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (0)
Pos 4 S(3.477) T(3.216) N(0.684) G(0.551) D(0.551) A(0.537) P(0.318) E(0) Q(0) K(0) H(-0.44) C(-1) R(-1) M(-1) I(-2)
L(-2) V(-2) F(-2) Y(-2) W(-3)
//

===============================
 SLIM 149
===============================
ID           Gp_dh_C.clust.0.15.4
Center             1cf2_OR_1
AvSimToCtr 0.725
AvRMSDToCtr 0.369 A
Size         7
NumDistinct 4
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            PYROCOCCUS HORIKOSHII (3), METHANOTHERMUS FERVIDUS (1)
Conservation       0.75

Members
      1cf2_PQ_1 1cf2_QP_1 1cf2_RO_1 2czc_AC_1 2czc_CA_1 2czc_BD_1 2czc_DB_1

Peptides

PartnerDomains
      Gp_dh_C (1cf2_OR_1,2czc_BD_1)
      Gp_dh_N (2czc_BD_1)

Dist Members Intf Alignment
      1cf2_OR_1   G     A     P       V      S     K     G     P     I      N     A     I     V     P      T     T
      2czc_AC_1         A     P       T      K     R     G     P     I      N     A                 P      T     T
      2czc_CA_1         A             T      K     R     G     P     I      N     A     K           P      T     T
      2czc_BD_1   A     A     P       T      K     R     G     P     I      N     A                 P      T     T

Dist Members ResidueID Alignment
      1cf2_OR_1   169   170   172     175    176   177   178   179   180    181   182   184   213   214    215   216
      2czc_AC_1         169   171     174    175   176   177   178   179    180   181               212    213   214
      2czc_CA_1         169           174    175   176   177   178   179    180   181   183         212    213   214
      2czc_BD_1   168   169   171     174    175   176   177   178   179    180   181               212    213   214

Alignment Occupancy     0.5   1       0.75   1     1     1     1     1      1     1     1     0.5   0.25   1     1     1
Gap in betw Columns     0     1       2      0     0     0     0     0      0     0     1     28,29 0      0

SLIM RegEx        [AG]A.P..[TV][KS][RK]GPINA.[KI]
SLIM Coverage           1
SLIM PSSM Match Cutoff 21.4904192263045
SLIM I=181997 Im=8098 Id=100 Idm=4
SLIM PSSM p-value 1

PSSM Listing
Pos 0 G(4.616) A(2.631) S(-0.07) T(-0.25) V(-1.25) C(-1.33) P(-2.07) N(-2.07) D(-2.07) E(-2.07) Q(-2.07) R(-2.07)
K(-2.07) M(-2.25) I(-2.33) L(-2.33) H(-2.69) F(-3.07) Y(-3.07) W(-3.07)
Gap (0)
Pos 1 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (1)
Pos 2 P(6.712) T(0.712) S(-1.28) A(-1.28) N(-1.28) D(-1.28) E(-1.28) Q(-1.28) K(-1.28) G(-2.28) H(-2.28) R(-2.28)
M(-2.28) V(-2.28) C(-3.28) I(-3.28) L(-3.28) Y(-3.28) F(-4.28) W(-4.28)
Gap (2)
Pos 3 T(3.713) V(2.621) I(1.633) S(0.728) P(0.728) G(0.718) D(0.718) M(-0.04) E(-0.24) Q(-0.24) K(-0.24) L(-0.24)
N(-0.27) H(-0.27) A(-0.64) C(-1) R(-1.24) F(-1.64) Y(-1.64) W(-3)
Gap (0)
Pos 4 K(4.714) S(2.667) R(1.728) E(0.827) Q(0.827) T(0.357) N(0.357) A(-0.04) D(-0.64) P(-1) H(-1) M(-1) G(-1.04)
L(-2) Y(-2) C(-2.04) I(-2.64) V(-2.64) F(-2.64) W(-3)
Gap (0)
Pos 5 R(4.728) K(3.752) Q(1) E(0.357) N(0) H(-0.17) S(-0.64) T(-0.64) A(-1) M(-1) P(-1.64) D(-1.64) G(-2) L(-2) Y(-
2) C(-3) I(-3) V(-3) F(-3) W(-3)
Gap (0)
Pos 6 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 7 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3) F(-
4) W(-4)
Gap (0)
Pos 8 I(4) L(2) M(1) V(1) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) P(-3) N(-3) D(-3) E(-3) Q(-3) H(-3) R(-3) K(-3) W(-3)
G(-4)
Gap (0)
Pos 9 N(6) S(1) D(1) T(0) G(0) E(0) Q(0) R(0) K(0) H(-1) P(-2) A(-2) M(-2) Y(-2) C(-3) I(-3) L(-3) V(-3) F(-3) W(-4)
Gap (0)
Pos 10 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (1)
Pos 11 K(3.614) I(2.614) L(0.631) R(0.620) M(-0.25) E(-0.36) Q(-0.36) V(-0.36) S(-1.25) T(-1.25) N(-1.33) F(-1.33)
A(-1.69) Y(-2.07) C(-2.25) P(-2.25) D(-2.25) H(-2.25) G(-3.25) W(-3.69)
//

===============================
 SLIM 150
===============================
ID          Gp_dh_N.clust.0.15.0
Center            1dbv_PQ_1
AvSimToCtr 0.550
AvRMSDToCtr 0.743 A
Size         201
NumDistinct 18
FracDDI           1
FracPeptides      0
FracIntra    0
Species           SPINACIA OLERACEA (2), CRYPTOSPORIDIUM PARVUM (2), LEISHMANIA MEXICANA (2), BACILLUS
STEAROTHERMOPHILUS (2), BURKHOLDERIA PSEUDOMALLEI 1710B (1), PLASMODIUM FALCIPARUM (1), PALINURUS VERSICOLOR (1),
BORRELIA BURGDORFERI B31 (1), THERMUS AQUATICUS (1)
Conservation      0.153846153846154

Members
      1a7k_AB_1   1a7k_CD_1   1a7k_BA_1   1a7k_DC_1   1gyp_AB_1   1gyp_BA_1   1gyp_CD_1   1gyp_DC_1   1ml3_DA_0   1qxs_DA_0
      3ids_DA_0   3dmt_CB_1   3dmt_AD_0   3dmt_BC_0   3dmt_DA_0   1i32_AB_1   1i32_DC_1   1i33_DC_1   1i32_BA_1   1i33_BA_1
      1i33_AB_1   1i32_CD_1   1i33_CD_1   1k3t_AD_0   1k3t_BC_0   1k3t_DA_0   1ml3_AD_0   1ml3_BC_0   3ids_AD_0   3ids_BC_0
      1ml3_CB_0   1qxs_AD_0   3ids_CB_0   1qxs_CB_0   1qxs_BC_0   1i32_EF_1   1i32_FE_1   1i33_EF_1   1i33_FE_1   1k3t_CB_0
      1crw_GR_1   1ihx_CA_1   1ihx_DB_1   1crw_RG_1   1ihy_AC_1   1ihy_BD_1   1ihy_CA_1   1ihy_DB_1   1ihx_AC_1   1ihx_BD_1
      1j0x_OR_1   1j0x_QP_1   1j0x_RO_1   1j0x_PQ_1   1dss_GR_1   1dss_RG_1   1szj_GR_1   1szj_RG_1   1u8f_OR_0   1u8f_RO_0
      1u8f_QP_0   1u8f_PQ_0   2vyn_DA_1   2vyv_DA_1   2vyn_AD_0   2vyn_BC_0   2vyv_BC_0   2vyv_AD_0   2vyn_CB_0   2vyv_CB_0
      1znq_OR_0   1znq_PQ_0   1znq_RO_0   1znq_QP_0   3e5r_AC_0   3e5r_BO_0   3e5r_CA_0   3e5r_OB_0   1vsu_AD_0   1vsu_BC_0
      1vsu_CB_0   1vsv_CB_0   1vsu_DA_0   1vsv_BC_0   1vsv_AD_0   1vsv_DA_0   3cif_AD_0   3cif_CB_0   3cif_BC_0   3cif_DA_0
      1ywg_OR_0   1ywg_QP_0   1ywg_PQ_0   1ywg_RO_0   2b4r_OR_0   2b4t_OR_0   2b4r_RO_0   2b4t_RO_0   2b4r_PQ_0   2b4t_PQ_0
      2b4r_QP_0   2b4t_QP_0   4gpd_12_1   4gpd_21_1   4gpd_34_1   4gpd_43_1   1cer_AD_0   1cer_OR_0   1cer_BC_0   1cer_PQ_0
      1cer_CB_0   1cer_QP_0   2g82_AD_0   2g82_OR_0   2g82_BC_0   2g82_RO_0   2g82_CB_0   2g82_PQ_0   2g82_QP_0   2g82_DA_0
      1cer_DA_0   1cer_RO_0   2d2i_OR_0   2d2i_RO_0   2d2i_PQ_0   2d2i_QP_0   1dbv_OR_1   1dbv_QP_1   2dbv_RO_1   2dbv_QP_1
      2dbv_PQ_1   1dbv_RO_1   2dbv_OR_1   3dbv_OR_1   4dbv_OR_1   4dbv_QP_1   4dbv_PQ_1   4dbv_RO_1   3dbv_PQ_1   3dbv_RO_1
      3dbv_QP_1   1gd1_OR_1   1gd1_PQ_1   1gd1_RO_1   1gd1_QP_1   3cmc_OR_1   3cmc_RO_1   3cmc_QP_1   3cmc_PQ_1   1npt_OR_1
      1npt_QP_1   1nqa_QP_1   1nqa_OR_1   1npt_RO_1   1nqa_RO_1   1npt_PQ_1   1nqa_PQ_1   3hja_AB_1   3hja_BA_1   3hja_CD_1
      3hja_DC_1   2gd1_OR_1   2gd1_PQ_1   2gd1_RO_1   2gd1_QP_1   1jn0_AB_0   1jn0_BA_0   1nbo_AB_0   1rm3_AB_0   1rm4_AB_0
      1rm4_BA_0   1rm3_BA_0   1rm5_AB_0   1rm5_BA_0   1nbo_BA_0   2pkr_CD_0   2pkr_OR_0   2pkr_RO_0   2pkr_DC_0   2pkr_IH_0
      2pkr_ML_0   2pkr_HI_0   2pkr_LM_0   2pkr_AB_0   2pkr_PQ_0   2pkr_BA_0   2pkr_QP_0   3doc_AB_0   3doc_BA_0   3doc_CD_0
      3doc_DC_0   3gnq_AB_0   3gnq_DC_0   3gnq_EF_0   3gnq_BA_0   3gnq_CD_0   3gnq_FE_0   3gnq_HG_0   3gnq_GH_0   1gpd_GR_1
      1gpd_RG_1

Peptides

PartnerDomains
      Gp_dh_C
(1dbv_PQ_1,1a7k_AB_1,1i33_BA_1,1crw_GR_1,3e5r_AC_0,1vsu_AD_0,1vsv_CB_0,1ywg_OR_0,4gpd_12_1,1cer_AD_0,2d2i_OR_0,2d2i
_RO_0,1gd1_OR_1,3hja_AB_1,1jn0_AB_0,1rm5_AB_0,3doc_AB_0,3gnq_AB_0)
      Gp_dh_N (2d2i_OR_0)
      F420_oxidored (3doc_AB_0)
Dist Members Intf   Alignment
      1dbv_PQ_1     L     D     A     S     H     L      A     R     A     E     S
      1a7k_AB_1     V     D     G     V     S     W            R     A     V     N
      1i33_BA_1     V     D     G     V     S     W      G     R     A     V     N
      1crw_GR_1     V     D     G     P     S     W            R     G     Q     N
      3e5r_AC_0     V     D     G     P     S     W            R     A     F     N
      1vsu_AD_0                                   W            R     C     N     N
      1vsv_CB_0     V     D     G     P     S     W            R     C     N     N
      1ywg_OR_0     V     D     G     P     S     W            R     C     S     N
      4gpd_12_1     V     D     G     P     S     W      G     R     G     Q     N
      1cer_AD_0     L     D     L     P     H     L      A     R     A     I     N
      2d2i_OR_0     L     D     A     S     H     L      A     R     A     V
      2d2i_RO_0     L     D     A     S     H     L      A     R     A     V     N
      1gd1_OR_1     L     D     L     P     H     L      A     R     A     E     S
      3hja_AB_1     L     D     L     P     H     L      A     R     A     L     S
      1jn0_AB_0     L     D     A     S     H     L      A     R     A     L     N
      1rm5_AB_0     L     D     A     A     H     L      A     R     A     L     N
      3doc_AB_0     L     D     T     M     H     L      A     R     A     L     S
      3gnq_AB_0     T     D     V     Y     H     L      A     R     S     H     S

Dist Members ResidueID Alignment
      1dbv_PQ_1   185   186   187     188   190   193    196   197   198   201   202
      1a7k_AB_1   203   204   205     206   207   211          215   216   219   220
      1i33_BA_1   203   204   205     206   207   211    214   215   216   219   220
      1crw_GR_1   185   186   187     188   189   193          197   198   201   202
      3e5r_AC_0   190   191   192     193   194   198          202   203   206   207
      1vsu_AD_0                                   199          203   204   207   208
      1vsv_CB_0   189   190   191     192   193   199          203   204   207   208
      1ywg_OR_0   189   190   191     192   193   199          203   204   207   208
      4gpd_12_1   184   185   186     187   188   192    195   196   197   200   201
      1cer_AD_0   185   186   187     188   190   193    196   197   198   201   202
      2d2i_OR_0   191   192   193     194   195   198    201   202   203   206
      2d2i_RO_0   191   192   193     194   195   198    201   202   203   206   207
      1gd1_OR_1   185   186   187     188   190   193    196   197   198   201   202
      3hja_AB_1   189   190   191     192   193   196    199   200   201   204   205
      1jn0_AB_0   185   186   187     188   190   193    196   197   198   201   202
      1rm5_AB_0   185   186   187     188   190   193    196   197   198   201   202
      3doc_AB_0   189   190   191     192   193   196    199   200   201   204   205
      3gnq_AB_0   190   191   192     193   194   197    200   201   202   205   206

Alignment Occupancy       0.944 0.944 0.944 0.944 0.944 1      0.666 1     1     1     0.944
Gap in betw Columns       0     0     0     0     2,5   2      0     0     2     0

SLIM RegEx          [LW]..[AG]R[ACGS]..[VLNEQSFHI][NS]
SLIM Coverage             0.833333333333333
SLIM PSSM Match Cutoff 21.4815207434368
SLIM I=181997 Im=5043 Id=100 Idm=5
SLIM PSSM p-value 0.0852067236389574

PSSM Listing
Pos 0 W(10.18) L(3.414) V(2.414) M(1.451) I(1.417) Y(1.249) F(0.567) C(-1.32)   A(-1.48) Q(-2) S(-2.32) T(-2.32) R(-
2.32) K(-2.32) H(-2.43) G(-2.65) E(-3) P(-3.32) N(-3.32) D(-4)
Gap (2)
Pos 1 G(3.815) A(3.415) S(0.483) C(-0.57) T(-0.68) P(-1.51) N(-1.51) E(-1.51)   Q(-1.51) R(-1.51) K(-1.51) M(-1.56)
I(-1.57) L(-1.57) V(-1.68) D(-2.15) H(-2.40) F(-2.51) Y(-2.51) W(-3.15)
Gap (0)
Pos 2 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2)   L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 3 C(7.208) G(3.818) A(3.606) S(1.613) T(-0.27) N(-0.86) M(-1.10) Q(-1.12)   K(-1.12) E(-1.14) I(-1.15) L(-1.15)
P(-1.24) R(-1.24) V(-1.30) D(-1.63) H(-2.00) F(-2.07) Y(-2.07) W(-2.60)
Gap (2)
Pos 4 H(5.111) N(3.815) F(3.127) Q(2.867) E(2.866) V(2.821) L(2.583) I(2.221)   S(1.295) M(0.963) Y(0.581) D(0.379)
K(-0.15) R(-0.43) T(-0.48) A(-0.53) W(-1.47) C(-1.47) G(-1.49) P(-1.77)
Gap (0)
Pos 5 N(5.597) S(2.831) D(0.737) T(0.351) G(-0.05) E(-0.05) Q(-0.05) K(-0.05)   A(-0.16) R(-0.26) H(-1.05) P(-1.64)
M(-1.64) C(-1.99) Y(-2.05) I(-2.64) L(-2.64) V(-2.64) F(-2.64) W(-3.64)
//

===============================
 SLIM 151
===============================
ID           Gp_dh_N.clust.0.15.2
Center             2vyv_AB_0
AvSimToCtr 0.647
AvRMSDToCtr 0.446 A
Size         50
NumDistinct 15
FracDDI            0.266666666666667
FracPeptides       0
FracIntra    0
Species            GEOBACILLUS STEAROTHERMOPHILUS (2), TRYPANOSOMA CRUZI (2), RATTUS NORVEGICUS (1), PALINURUS
VERSICOLOR (1), THERMOTOGA MARITIMA (1), ORYCTOLAGUS CUNICULUS (1), SYNECHOCOCCUS ELONGATUS PCC 7942 (1),
ESCHERICHIA COLI (1), THERMUS AQUATICUS (1)
Conservation       0.181818181818182

Members
      1cer_BD_0 1cer_PR_0 1cer_CA_0 1cer_QO_0 1dc5_AB_0 1dc5_BA_0 2vyn_AB_0 2vyn_BA_0 2vyv_BA_0 2vyn_DC_1
      2vyv_DC_1 2vyn_CD_0 2vyv_CD_0 3cif_AC_0 3cif_BD_0 3cif_DB_0 1vsu_CA_0 1vsv_BD_0 1ihx_AB_1 1ihx_BA_1
      1j0x_QO_1 3e5r_AO_0 3e5r_BC_0 3e5r_OA_0 1k3t_AC_0 3dmt_AC_0 3ids_BD_0 3ids_CA_0 3ids_DB_0 3dmt_BD_0
      3dmt_DB_0 3ids_AC_0 1k3t_DB_0 1hdg_OQ_0 1hdg_QO_0 1nq5_AC_1 3cmc_OQ_1 3cmc_RP_1 3cmc_QO_1 3cmc_PR_1
      4dbv_PR_1 4dbv_QO_1 4dbv_RP_1 2gd1_PR_1 3doc_AD_0 3doc_BC_0 3doc_CB_0 3doc_DA_0 2d2i_RP_0 2duu_RP_0

Peptides

PartnerDomains
      Gp_dh_C (2vyv_AB_0,2vyn_CD_0,1ihx_AB_1,1j0x_QO_1)

Dist Members Intf   Alignment
      2vyv_AB_0     T     D     D     V     V     T     D     F     E
      1cer_BD_0           D     E     I     V     Q     D           D
      2vyn_CD_0     T     D     Q     V     V     T     D     F
      1ihx_AB_1     T     D     D     V     V     C     D
      1j0x_QO_1     T     D     Q     V     V     C     D
      3e5r_AO_0           E     D     L     V     T     D
      1k3t_AC_0           E     E     L     V     A     D     F
      3dmt_AC_0           E     E     L     V     A     D     F     D
      1hdg_OQ_0           E     P     I     V     S     D
      1nq5_AC_1           E     P     L     V     R     D
      4dbv_PR_1           E     P     L     V     R     D     Y
      3doc_AD_0           E     K     L           H     D     F     D
      3doc_BC_0                       L     V     H     D     F
      2d2i_RP_0           L     P     L           S     D
      2duu_RP_0                       L     V     S     D

Dist Members ResidueID Alignment
      2vyv_AB_0   273   275   276     277   278   280   281   282   285
      1cer_BD_0         276   277     278   279   281   282         286
      2vyn_CD_0   274   276   277     278   279   281   282   283
      1ihx_AB_1   274   276   277     278   279   281   282
      1j0x_QO_1   274   276   277     278   279   281   282
      3e5r_AO_0         281   282     283   284   286   287
      1k3t_AC_0         294   295     296   297   299   300   301
      3dmt_AC_0         294   295     296   297   299   300   301   304
      1hdg_OQ_0         276   277     278   279   281   282
      1nq5_AC_1         276   277     278   279   281   282
      4dbv_PR_1         276   277     278   279   281   282   283
      3doc_AD_0         279   280     281         284   285   286   289
      3doc_BC_0                       281   282   284   285   286
      2d2i_RP_0         281   282     283         286   287
      2duu_RP_0                       283   284   286   287

Alignment Occupancy       0.266 0.866 0.866 1     0.866 1     1     0.466 0.266
Gap in betw Columns       0     0     0     1     0
SLIM   RegEx        [EDL][PDEQK][LVI]V.[STHACRQ]D
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 20.9938535806319
SLIM   I=181997 Im=7301 Id=100 Idm=5
SLIM   PSSM p-value 0.160033298114864

PSSM Listing
Pos 0 D(4.926) E(4.272) Q(1.332) L(1.299) K(0.336) T(0.323) V(0.321) N(0.319)   S(-0.21) H(-0.52) M(-0.55) I(-0.63)
R(-0.65) P(-1.21) A(-1.42) G(-1.67) F(-2.23) Y(-2.26) C(-3.00) W(-3.26)
Gap (0)
Pos 1 P(5.678) D(4.411) E(3.478) Q(3.079) K(2.395) T(0.511) R(0.111) N(0.040)   S(-0.35) H(-0.76) A(-1.30) M(-1.46)
G(-1.80) Y(-2.22) V(-2.55) L(-2.91) I(-3.14) W(-3.22) C(-3.30) F(-3.35)
Gap (0)
Pos 2 L(3.540) V(3.294) I(2.837) M(1.708) F(-0.18) A(-0.62) C(-1) Y(-1) S(-2)   T(-2) Q(-2.08) K(-2.08) R(-2.29) W(-
2.29) P(-2.62) E(-2.62) N(-3) H(-3) D(-3.47) G(-3.62)
Gap (0)
Pos 3 V(3.856) I(2.856) M(0.856) L(0.856) A(-0.14) C(-1.14) F(-1.14) Y(-1.14)   S(-2.14) T(-2.14) P(-2.14) E(-2.14)
Q(-2.14) K(-2.14) G(-3.14) N(-3.14) D(-3.14) H(-3.14) R(-3.14) W(-3.14)
Gap (1)
Pos 4 C(6.985) H(5.986) R(3.010) S(2.488) T(2.468) Q(2.383) A(2.094) K(0.513)   N(0.308) D(0.195) E(0.191) Y(0.111)
G(-0.07) P(-0.30) M(-0.97) L(-1.68) I(-1.77) V(-1.86) F(-1.90) W(-2.54)
Gap (0)
Pos 5 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3)   M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
//

===============================
 SLIM 152
===============================
ID           HATPase_c.clust.0.2.1
Center             1z5b_BA_0
AvSimToCtr 0.440
AvRMSDToCtr 0.911 A
Size         25
NumDistinct 6
FracDDI            0
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (2), ESCHERICHIA COLI (2), SULFOLOBUS SHIBATAE (1), SACCHAROMYCES CEREVISIAE (1)
Conservation       0.333333333333333

Members
      1ei1_AB_0 1ei1_BA_0 1s16_AB_0 1s16_BA_0 1pvg_AB_0 1qzr_AB_0 1pvg_BA_0 1qzr_BA_0 1zxm_AB_0 1zxm_BA_0
      1zxn_AB_0 1zxn_BA_0 1zxn_CD_0 1zxn_DC_0 1mx0_AB_0 1mx0_BA_0 1mx0_EF_0 1mx0_CD_0 1z5a_AB_0 1z5b_AB_0
      1z5c_AB_0 1z5a_BA_0 1z5c_BA_0 1mx0_DC_0 1mx0_FE_0
Peptides

PartnerDomains

Dist Members Intf   Alignment
      1z5b_BA_0     K     E     K     F      T      S      L      S     P     F      R     N     E    L     D     R     E
      K     I       E     E     T     R      V      E      K      K     E     V      E
      1ei1_AB_0     S           S     I      K      V      L      K           A      K     R          Y
                                                                                     S
        1s16_AB_0                     I      E      V      L                  P
        1pvg_AB_0               K     Y      Q      K      I      S     Q     H      K     R
        1zxm_AB_0               I     Y      Q      K      K      T     Q     H      L
        1zxn_CD_0               I     Y      Q      K      K      T     Q     H      L     R

Dist Members ResidueID Alignment
      1z5b_BA_0   4     5     6       7      8      9      10     11    12    15     18    19    21   22    237   238
      239   242   243   290   291     294    295    297    298    301   302   432    433   434
      1ei1_AB_0   404         409     410    411    412    413    414         418    421   422        426
                                                                                     743
        1s16_AB_0                     2010   2011   2012   2013               2018
        1pvg_AB_0               11    12     13     14     15     16    17    20     23    24
        1zxm_AB_0               33    34     35     36     37     38    39    42     45
        1zxn_CD_0               33    34     35     36     37     38    39    42     45    46

Alignment Occupancy     0.333 0.166 0.833 1     1     1     1     0.833 0.666 1     0.833 0.666 0.166 0.333 0.166
      0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.333
Gap in betw Columns     0     0     0     0     0     0     2     2     0

SLIM   RegEx        [IKS][YIF][QTKE][KVS][LKI][STK][QP]..[HAFP]..[KLR][RN]
SLIM   Coverage           0.833333333333333
SLIM   PSSM Match Cutoff 25.3888022124858
SLIM   I=181997 Im=9057 Id=707 Idm=36
SLIM   PSSM p-value 0.0675535031032316

PSSM Listing
Pos 0 K(3.905) I(2.903) S(2.248) R(0.932) L(0.928) M(0.086) E(0.085) Q(0.085) V(-0.05) T(-0.18) N(-0.21) A(-0.35)
F(-0.98) D(-1.18) G(-1.52) C(-1.60) P(-1.60) H(-1.60) Y(-1.65) W(-3.18)
Gap (0)
Pos 1 Y(6.313) F(4.351) I(2.920) W(1.426) H(1.327) L(1.034) M(0.228) V(0.140) C(-1.54) A(-1.54) Q(-1.56) S(-2) T(-2)
N(-2.37) E(-2.37) R(-2.37) K(-2.37) D(-3) P(-3.11) G(-3.23)
Gap (0)
Pos 2 Q(4.331) E(3.369) K(3.285) T(2.295) R(1.036) D(0.809) S(0.251) N(-1.11) H(-0.11) P(-0.27) M(-0.43) G(-0.56)
A(-1) Y(-1.37) L(-2.11) V(-2.23) C(-2.32) W(-2.37) I(-2.74) F(-2.74)
Gap (0)
Pos 3 K(4.309) V(2.903) S(2.266) I(1.908) R(1.327) E(0.451) Q(0.451) M(0.140)   T(-0.00) L(-0.00) A(-0.03) N(-0.03)
D(-1.00) P(-1.23) H(-1.33) G(-1.38) Y(-1.54) C(-1.56) F(-1.77) W(-3)
Gap (0)
Pos 4 K(3.902) L(3.352) I(2.550) V(2.352) M(1.451) R(0.931) Q(-0.01) E(-0.06)   F(-0.38) S(-0.85) T(-0.85) A(-1) N(-
1.00) Y(-1.23) C(-1.33) P(-1.85) H(-1.85) D(-1.96) W(-2.37) G(-2.85)
Gap (0)
Pos 5 K(3.234) S(2.958) T(2.958) R(0.389) N(0.340) D(0.262) G(0.232) E(0.113)   Q(0.113) P(0.086) A(0.086) H(-0.65)
M(-1.18) C(-1.37) L(-2.18) Y(-2.18) I(-2.31) V(-2.31) F(-2.31) W(-3.18)
Gap (0)
Pos 6 P(5.209) Q(4.307) E(1.323) K(0.350) R(0.323) T(-0.04) S(-0.57) N(-0.57)   D(-0.57) H(-0.64) M(-0.64) A(-1.40)
Y(-1.64) G(-2.40) V(-2.40) L(-2.57) W(-2.64) C(-3.40) I(-3.40) F(-3.57)
Gap (2)
Pos 7 H(7.306) P(5.208) F(4.211) A(2.224) Y(1.956) N(0.398) D(0.372) T(0.036)   S(-0.32) E(-0.46) Q(-0.46) R(-0.52)
W(-0.63) M(-1.14) K(-1.15) G(-1.32) I(-1.34) L(-1.34) C(-1.50) V(-1.74)
Gap (2)
Pos 8 K(3.926) R(3.304) L(2.905) V(1.905) M(0.973) I(0.911) Q(0.339) E(0.085)   N(-0.66) S(-0.82) T(-0.82) F(-1.02)
A(-1.18) H(-1.18) Y(-1.65) P(-1.82) D(-1.88) C(-1.91) G(-2.60) W(-2.65)
Gap (0)
Pos 9 R(4.309) N(4.215) K(1.350) Q(0.422) E(-0.40) S(-0.45) H(-0.57) D(-0.65)   T(-1.04) G(-1.45) A(-1.57) M(-1.57)
P(-2.40) Y(-2.40) L(-2.57) C(-3.40) I(-3.40) V(-3.40) F(-3.40) W(-3.57)
//

===============================
 SLIM 153
===============================
ID           HATPase_c.clust.0.2.9
Center             1til_CD_0
AvSimToCtr 0.606
AvRMSDToCtr 0.514 A
Size         7
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            BACILLUS STEAROTHERMOPHILUS (2), GEOBACILLUS STEAROTHERMOPHILUS (2)
Conservation       0.5

Members
      1th8_AB_0 1thn_AB_0 1thn_CD_0 1tid_AB_0 1tid_CD_0 1til_AB_0 1til_EF_0

Peptides

PartnerDomains
      STAS (1til_CD_0,1th8_AB_0,1thn_AB_0,1thn_CD_0)
Dist Members Intf   Alignment
      1til_CD_0     D     H      E      R     F    M    D    A    S    L     G     V     G     R     A      R      L
      M     S       L     F
      1th8_AB_0     D     H             R     F    M    D    S    S    L     G     V     G                  R      L
      1thn_AB_0           H      E      R     F    M    D    S    S    L     G     V     G     R     A      R      L
      1thn_CD_0     D     H             R     F    M    D    S    S    L     G     V     G     R     A      R      L

Dist Members ResidueID Alignment
      1til_CD_0   23    24    28        31    55   56   57   58   59   61    62    63    66    67    86     89
      90    93    94    96    97
      1th8_AB_0   23    24              31    55   56   57   58   59   61    62    63    66                 89
      90
      1thn_AB_0         24    28        31    55   56   57   58   59   61    62    63    66    67    86     89
      90
      1thn_CD_0   23    24              31    55   56   57   58   59   61    62    63    66    67    86     89
      90

Alignment Occupancy       0.75   1      0.5   1    1    1    1    1    1     1     1     1     1     0.75   0.75   1
      1     0.25 0.25     0.25   0.25
Gap in betw Columns       0      3      2     23   0    0    0    0    1     0     0     2     0     18     2      0

SLIM   RegEx        FMD[SA]S.LGV..GR
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 20.4410953409607
SLIM   I=181997 Im=4020 Id=707 Idm=23
SLIM   PSSM p-value 0.017618168619226

PSSM Listing
Pos 0 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 1 M(5) L(2) I(1) Q(0) F(0) C(-1) S(-1) T(-1) A(-1) R(-1) K(-1) Y(-1) W(-1) P(-2) N(-2) E(-2) H(-2) V(-2) G(-3)
D(-3)
Gap (0)
Pos 2 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (0)
Pos 3 S(3.728) A(2.752) T(0.756) N(0.756) G(0) E(-0.17) Q(-0.17) K(-0.17) D(-0.24) C(-0.64) P(-1) R(-1) M(-1) H(-
1.17) I(-1.64) L(-1.64) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 4 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (1)
Pos 5 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 6 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 7 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (2)
Pos 8 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 9 R(4.712) K(1.712) Q(0.712) N(-0.28) E(-0.28) H(-0.28) S(-1.28) T(-1.28) A(-1.28) M(-1.28) P(-2.28) G(-2.28)
D(-2.28) L(-2.28) Y(-2.28) C(-3.28) I(-3.28) V(-3.28) F(-3.28) W(-3.28)
//

===============================
 SLIM 154
===============================
ID           HIM.clust.0.2.0
Center             1s7m_FE_0
AvSimToCtr 0.435
AvRMSDToCtr 2.198 A
Size         11
NumDistinct 5
FracDDI            0.6
FracPeptides       0
FracIntra    0
Species            HAEMOPHILUS INFLUENZAE (4), BARTONELLA HENSELAE (1)
Conservation       0.8

Members
      1s7m_AC_0 1s7m_ED_0 1s7m_BA_0 1s7m_CB_0 1s7m_DF_0 3d9x_AC_0 3d9x_BA_0 3d9x_CB_0 3emo_AB_0 3emo_BC_0
      3emo_CA_0

Peptides

PartnerDomains
      HIM (3emo_AB_0,3emo_BC_0,3emo_CA_0)

Dist Members Intf Alignment
      1s7m_FE_0   N     A     K     D       G   I     S     A     G      G    Q     S     V     V     L     R        A
      3d9x_AC_0               A     S       G   I     N     A     G      S    Q     K     I     F     L
      3emo_AB_0               V             V   I     D     V                 N     G     S     L
      3emo_BC_0                     V       V   I     D     N     V      A    N     S     L     Y
      3emo_CA_0                     V       V   I     D     N     V      A    G     S     L     Y

Dist Members ResidueID Alignment
        1s7m_FE_0   570   571   578   579   580   581   582    583   584    585   586   587    588   647   650   651
        676
        3d9x_AC_0               460   461   462   463   464    465   466    467   468   469    470   485   488
        3emo_AB_0               973         974   975   976    978                992   993    994   996
        3emo_BC_0                     973   974   975   976    977   978    979   992   994    996   997
        3emo_CA_0                     973   974   975   976    977   978    979   993   994    996   997

Alignment Occupancy       0.2   0.2   0.6   0.8   1     1      1     1      0.8   0.8   1      1     1     1     0.4
      0.2   0.2
Gap in betw Columns       0     0     0     0     0,1   0      0     0,13   0,1   0,1   0,58

SLIM   RegEx        [AKV][VSD][VG]I[DSN].{0,1}[ANV][GV][ASG]
SLIM   Coverage           0.6
SLIM   PSSM Match Cutoff 22.8997714515285
SLIM   I=181997 Im=8221 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 K(3.393) A(2.415) V(2.393) I(1.411) R(0.445) S(-0.26) M(-0.36) E(-0.43) Q(-0.43) L(-0.43) T(-1.20) C(-1.26)
N(-1.26) G(-1.43) P(-1.74) Y(-2.05) D(-2.20) H(-2.20) F(-2.20) W(-3.51)
Gap (0)
Pos 1 D(4.393) V(3.085) S(2.413) I(2.088) E(0.549) M(0.157) T(0.132) L(0.111) N(0.101) A(-0.02) Q(-0.78) K(-1.11)
G(-1.22) C(-1.46) P(-1.60) F(-1.69) Y(-1.69) H(-1.78) R(-2.11) W(-3.39)
Gap (0)
Pos 2 G(5.083) V(3.501) I(2.489) M(0.501) L(0.493) T(0.155) A(0) S(-0.73) C(-1.42) F(-1.42) Y(-1.42) D(-1.73) P(-2)
E(-2) Q(-2) K(-2) N(-2.47) H(-2.47) R(-2.47) W(-2.47)
Gap (0)
Pos 3 I(4) L(2) M(1) V(1) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) P(-3) N(-3) D(-3) E(-3) Q(-3) H(-3) R(-3) K(-3) W(-3)
G(-4)
Gap (0)
Pos 4 D(5.492) N(4.417) S(2.490) E(1.575) T(0.864) Q(0) A(-0.42) G(-0.47) K(-0.47) H(-1) R(-1.03) P(-1.13) M(-2.03)
C(-2.17) Y(-2.47) I(-2.70) V(-2.70) F(-2.70) L(-3.03) W(-3.70)
Gap (0,1)
Pos 5 N(5.084) A(3.095) V(2.397) I(1.431) S(0.789) D(0.140) G(-0.21) M(-0.29) L(-0.34) T(-0.55) E(-0.55) Q(-0.55)
K(-0.55) R(-0.58) C(-0.70) P(-1.47) H(-1.55) Y(-1.70) F(-1.91) W(-3.29)
Gap (0)
Pos 6 G(5.083) V(3.101) I(2.084) T(0.132) M(0.101) L(0.090) A(-0.22) S(-0.78) C(-1.78) D(-1.78) F(-1.78) Y(-1.78)
P(-2.22) E(-2.22) Q(-2.22) K(-2.22) N(-2.60) H(-2.60) R(-2.60) W(-2.60)
Gap (0)
Pos 7 G(4.397) A(3.117) S(2.502) T(0.210) N(-0.33) C(-0.72) E(-0.98) Q(-0.98) K(-0.98) D(-1.11) V(-1.26) P(-1.39)
R(-1.39) M(-1.46) I(-1.72) L(-1.72) H(-1.86) F(-2.39) Y(-2.39) W(-2.86)
//

===============================
 SLIM 155
===============================
ID           HLH.clust.0.25.0
Center             1nlw_ED_0
AvSimToCtr 0.494
AvRMSDToCtr 0.966 A
Size         29
NumDistinct 19
FracDDI            0.842105263157895
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (11), MUS MUSCULUS (6), SACCHAROMYCES CEREVISIAE (2)
Conservation       0.578947368421053

Members
      1a0a_AB_0 1a0a_BA_0 1am9_AB_0 1am9_CD_0 1am9_BA_0 1am9_DC_0 1ukl_CD_0 1ukl_EF_0 1ukl_DC_0 1ukl_FE_0
      1hlo_AB_0 1nkp_AB_0 1nkp_DE_0 1nkp_BA_0 1nkp_ED_0 1nlw_BA_0 1nlw_AB_0 1nlw_DE_0 2ql2_BA_0 2ql2_DC_0
      1hlo_BA_0 2ql2_AB_0 2ql2_CD_0 1mdy_AB_0 1mdy_CD_0 1mdy_BA_0 1mdy_DC_0 1r05_AB_0 1r05_BA_0

Peptides

PartnerDomains
      HLH
(1nlw_ED_0,1a0a_BA_0,1am9_AB_0,1ukl_CD_0,1ukl_EF_0,1ukl_DC_0,1ukl_FE_0,1hlo_AB_0,1nkp_BA_0,1nkp_ED_0,2ql2_BA_0,2ql2
_AB_0,2ql2_CD_0,1mdy_AB_0,1mdy_BA_0,1r05_AB_0)

Dist Members Intf   Alignment
      1nlw_ED_0     H     L     S   L     K     L     L     V     T     L     L        T   A    K     H     I     K
      L     E       D
      1a0a_AB_0     R     L     A   L     E     L     L           K     A     V        E   A    C     Y     I     R
      L     Q
      1a0a_BA_0     R     L     A   L     E     L     L     I     A     T     V        E   A    C     Y     I     R
      L     Q
      1am9_AB_0                 K   I     E     L     L     V     K     S     L        R   A    I     Y     I     R
      L     Q       N
      1am9_BA_0           I     K   I     E     L     L           K     S     L        R   A    I     Y     I     R
      L     Q       N
      1ukl_CD_0                     I     E     L     L     V     K     S     L        R   A    I     Y     I     K
      L     Q       N
      1ukl_EF_0                 K   I     E     L     L     V     K     S     L        R   A    I     Y     I     K
      L     Q       N
      1ukl_DC_0           I     K   I     E     L     L     V                 L            A    I     Y     I     K
      L     Q       N
      1ukl_FE_0           I     K   I     E     L     L     V                 L        R   A    I     Y     I     K
      L     Q       N
      1hlo_AB_0   H     I     S     F     S     L     S     V     R     A     L     D     A     T     Y     I     Q
      M     R     N
      1nkp_BA_0         L     S     F     A     L     Q     I     K     V     L     K     A     T     Y     I     L
      V     Q     E
      1nkp_ED_0   E     L     S     F     A     L     Q     I     K     V     L     K     A     T     Y     I     L
      V     Q     E
      2ql2_BA_0   D     I     A     F     E     L     M     C     K     L     L     Q     A     V     V     I     L
      L     E     V
      2ql2_AB_0         L     A     L     N     L     V     V     K     I     L     R     A     K     Y     I     W
      L     S
      2ql2_CD_0   G     L     A     L     N     L     V     V     K     I     L     R     A     K     Y     I     W
      L     S     L
      1mdy_AB_0   K     V     A     F     T     L     S     T           V     L           A     I     Y     I
      L
      1mdy_CD_0         V     A     F     T     L     S                 V     L     R     A     I     Y     I
      L     Q     L
      1mdy_BA_0   K     V     A     F     T     L     S     T     K     V     L     R     A     I     Y     I
      L     Q     L
      1r05_AB_0         I     S     F     S     L     S     V     R           L     D     A     T     Y     I     Q
      M     R     V

Dist Members ResidueID Alignment
      1nlw_ED_0   516   517   520   521   523   524   527   528   539   540   543   544   546   547   549   550
      551   553   554   557
      1a0a_AB_0   15    16    19    20    22    23    26          42    43    46    47    49    50    52    53
      54    56    57
      1a0a_BA_0   15    16    19    20    22    23    26    27    43    44    46    47    49    50    52    53
      54    56    57
      1am9_AB_0               342   343   345   346   349   350   359   360   363   364   366   367   369   370
      371   373   374   377
      1am9_BA_0         339   342   343   345   346   349         359   360   363   364   366   367   369   370
      371   373   374   377
      1ukl_CD_0                     350   352   353   356   357   366   367   370   371   373   374   376   377
      378   380   381   384
      1ukl_EF_0               349   350   352   353   356   357   366   367   370   371   373   374   376   377
      378   380   381   384
      1ukl_DC_0         346   349   350   352   353   356   357               370         373   374   376   377
      378   380   381   384
      1ukl_FE_0         346   349   350   352   353   356   357               370   371   373   374   376   377
      378   380   381   384
      1hlo_AB_0   28    29    32    33    35    36    39    40    50    51    54    55    57    58    60    61
      62    64    65    68
      1nkp_BA_0         917   920   921   923   924   927   928   939   940   943   944   946   947   949   950
      951   953   954   957
        1nkp_ED_0   516   517   520   521   523   524   527   528    539   540   543   544   546   547   549   550
        551   553   554   557
        2ql2_BA_0   557   558   561   562   564   565   568   569    581   582   585   586   588   589   591   592
        593   595   596   599
        2ql2_AB_0         117   120   121   123   124   127   128    139   140   143   144   146   147   149   150
        151   153   154
        2ql2_CD_0   116   117   120   121   123   124   127   128    139   140   143   144   146   147   149   150
        151   153   154   157
        1mdy_AB_0   124   125   128   129   131   132   135   136          147   150         153   154   156   157
        160
        1mdy_CD_0         125   128   129   131   132   135                147   150   151   153   154   156   157
        160   161   164
        1mdy_BA_0   124   125   128   129   131   132   135   136    146   147   150   151   153   154   156   157
        160   161   164
        1r05_AB_0         19    22    23    25    26    29    30     40          44    45    47    48    50    51
        52    54    55    58

Alignment Occupancy     0.473 0.842 0.947 1       1     1     1      0.842 0.789 0.842 1     0.894 1     1     1     1
      0.842 1     0.947 0.789
Gap in betw Columns     2     0     1     0       2     0     8,15   0     1,2   0     1     0     1     0     0     1
      0     2

SLIM   RegEx        [KRAT][VSAILT].{1,2}[LV][RDKEQT].A[ITKCV].[YHV]I[KRLQW].[LMV][QSRE]..[NLEVD]
SLIM   Coverage           0.947368421052632
SLIM   PSSM Match Cutoff 27.6901242221251
SLIM   I=181997 Im=6077 Id=835 Idm=53
SLIM   PSSM p-value 4.81987915504901e-06

PSSM Listing
Pos 0 K(4.463) R(2.992) T(1.255) A(1.145) Q(0.658) E(0.560) S(-0.10) N(-0.27) P(-0.94) H(-0.97) D(-0.97) M(-1.23)
G(-1.24) L(-2.12) Y(-2.23) C(-2.24) I(-2.80) V(-3.03) F(-3.03) W(-3.23)
Gap (0)
Pos 1 V(2.822) S(2.483) I(2.475) L(1.989) A(1.899) T(1.266) M(0.649) N(-0.37) G(-0.74) D(-0.94) C(-0.97) F(-1.02)
Q(-1.03) K(-1.03) E(-1.05) P(-1.18) Y(-1.49) R(-1.78) H(-1.78) W(-2.97)
Gap (1,2)
Pos 2 L(3.894) V(3.166) I(2.166) M(1.931) F(-0.06) A(-0.83) C(-1) Y(-1) S(-2) T(-2) Q(-2) K(-2) R(-2.06) W(-2.06)
P(-2.83) E(-2.83) N(-3) H(-3) G(-3.83) D(-3.83)
Gap (0)
Pos 3 R(4.267) D(3.773) K(2.977) E(2.867) Q(2.334) T(1.280) N(0.072) H(-0.27) S(-0.37) P(-1.07) A(-1.18) M(-1.18)
G(-1.26) Y(-2.08) L(-2.30) C(-2.84) V(-2.92) I(-3.01) F(-3.01) W(-3.08)
Gap (1)
Pos 4 A(4) S(1) C(0) G(0) T(-1) P(-1) N(-1) E(-1) Q(-1) R(-1) K(-1) M(-1) I(-1) L(-1) D(-2) H(-2) V(-2) F(-2) Y(-2)
W(-3)
Gap (0)
Pos 5 C(6.749) I(3.295) K(3.164) T(2.464) V(1.443) L(1.316) M(0.473) R(0.243) S(-0.17) Q(-0.39) E(-0.39) P(-0.40)
D(-0.41) G(-0.49) F(-0.60) A(-0.75) N(-0.91) H(-1.20) Y(-1.35) W(-2.83)
Gap (1)
Pos 6 Y(6.889) H(5.096) F(2.890) W(1.890) V(1.166) I(0.328) M(-0.73) L(-0.74) Q(-0.94) N(-1.32) D(-1.65) T(-1.71)
A(-1.71) E(-1.71) R(-1.73) S(-1.91) K(-1.91) C(-1.94) P(-2.83) G(-2.91)
Gap (0)
Pos 7 I(4) L(2) M(1) V(1) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) P(-3) N(-3) D(-3) E(-3) Q(-3) H(-3) R(-3) K(-3) W(-3)
G(-4)
Gap (0)
Pos 8 W(8.748) K(3.711) R(3.511) Q(2.830) L(2.164) V(1.167) E(0.540) M(0.395) I(0.182) Y(-0.06) N(-0.52) F(-0.74)
S(-0.74) T(-0.74) H(-0.83) A(-1.28) D(-1.44) P(-1.74) C(-2.29) G(-2.34)
Gap (1)
Pos 9 L(3.787) M(3.079) V(3.073) I(2.108) F(-0.06) A(-0.83) C(-1) Y(-1) Q(-1.48) S(-1.83) T(-1.83) K(-1.83) R(-1.89)
W(-1.89) P(-2.69) E(-2.69) N(-2.83) H(-2.83) G(-3.69) D(-3.69)
Gap (0)
Pos 10 Q(4.552) E(3.020) R(2.861) S(1.875) K(1.059) D(0.424) N(0.120) T(0.059) H(-0.12) M(-0.32) A(-0.51) P(-1.12)
Y(-1.29) G(-1.51) L(-2.12) V(-2.20) W(-2.29) C(-2.55) I(-2.87) F(-2.87)
Gap (2)
Pos 11 N(5.003) D(3.136) E(2.797) V(2.191) L(2.189) I(1.196) M(0.418) Q(0.210) S(0.178) K(-0.34) T(-0.42) R(-0.67)
G(-0.89) H(-1.29) A(-1.35) F(-1.50) Y(-1.81) P(-2.03) C(-2.12) W(-3.22)
//

===============================
 SLIM 156
===============================
ID           HMA.clust.0.2.0
Center             1fee_AB_0
AvSimToCtr 0.462
AvRMSDToCtr 1.240 A
Size         11
NumDistinct 6
FracDDI            0.666666666666667
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (4), SACCHAROMYCES CEREVISIAE (2)
Conservation       0.666666666666667

Members
      1fe0_AB_0 1fe4_AB_0 1fe0_BA_0 1fee_BA_0 1fe4_BA_0 2ggp_AB_0 3cjk_AB_0 2k1r_BA_0 2ggp_BA_0 3cjk_BA_0
      2k1r_AB_0

Peptides

PartnerDomains
      HMA (1fee_AB_0,3cjk_AB_0,2k1r_BA_0,2k1r_AB_0)
Dist Members Intf   Alignment
      1fee_AB_0     D     T     C     G     C     E     A     R     V     K     T     G     K     T
      2ggp_AB_0                             C           T                       C     G
      3cjk_AB_0     G     T     C     S     C     W     T           Q     D     M     G     F     D
      2k1r_BA_0     G     T     N     S     C     W     T     Q     Q     D     M     G     F     D
      2ggp_BA_0           T     C     G     C     G     A     K     V     K     T     G     K
      2k1r_AB_0     D     T     G     G     C     E     A     R     V     K     T     G     K     T

Dist Members ResidueID Alignment
      1fee_AB_0   9     11    12      14    15    17    18    21    22    57    58    59    60    61
      2ggp_AB_0                             16          19                      62    63
      3cjk_AB_0   12    14    15      17    18    20    21          25    64    65    66    67    68
      2k1r_BA_0   12    14    16      17    18    20    21    24    25    64    65    66    67    68
      2ggp_BA_0         14    15      17    18    20    21    24    25    62    63    64    65
      2k1r_AB_0   82    84    86      87    88    90    91    94    95    130   131   132   133   134

Alignment Occupancy       0.666 0.833 0.833 0.833 1     0.833 1     0.666 0.833 0.833 1     1     0.833 0.666
Gap in betw Columns       1     0,1   0,1   0     1     0     2     0     34,38 0     0     0     0

SLIM   RegEx        [DG].T.{0,1}[CNG].{0,1}[GS]C.[WEG][AT]..[RQK][VQ]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 25.5571392869383
SLIM   I=181997 Im=6928 Id=30 Idm=14
SLIM   PSSM p-value 1.03656312372755e-12

PSSM Listing
Pos 0 G(4.902) D(4.902) E(0.919) T(0.594) N(-0.05) S(-0.40) A(-0.97) Q(-0.97) V(-1.05) P(-1.78) H(-1.78) K(-1.78)
R(-2.40) W(-2.97) C(-3.40) M(-3.40) F(-3.40) Y(-3.40) I(-3.78) L(-4.40)
Gap (1)
Pos 1 T(3.817) S(0.817) P(0.817) G(0.817) D(0.817) N(-0.18) E(-0.18) Q(-0.18) H(-0.18) K(-0.18) C(-1.18) A(-1.18)
R(-1.18) M(-1.18) I(-2.18) L(-2.18) V(-2.18) F(-2.18) Y(-2.18) W(-3.18)
Gap (0,1)
Pos 2 C(8.306) G(4.211) N(4.208) S(-0.21) T(-0.21) A(-0.37) D(-0.61) V(-1.02) M(-1.53) Q(-1.54) R(-1.54) K(-1.54)
E(-1.61) I(-1.63) L(-1.63) H(-2.21) Y(-2.31) W(-2.37) F(-2.47) P(-2.65)
Gap (0,1)
Pos 3 G(5.308) S(2.928) T(0.817) A(0.340) N(-0.02) V(-0.60) D(-0.65) E(-0.91) Q(-0.91) K(-0.91) P(-1.65) H(-1.65)
R(-1.65) C(-1.91) M(-1.91) W(-2.47) F(-2.65) Y(-2.65) I(-2.91) L(-2.91)
Gap (0)
Pos 4 C(9) A(0) S(-1) T(-1) M(-1) I(-1) L(-1) V(-1) F(-2) Y(-2) W(-2) P(-3) G(-3) N(-3) D(-3) Q(-3) H(-3) R(-3) K(-
3) E(-4)
Gap (1)
Pos 5 W(9.901) G(4.209) E(3.902) Q(0.928) D(0.928) Y(0.922) K(-0.05) F(-0.07) T(-0.21) S(-0.66) H(-0.91) R(-0.98)
N(-1.01) A(-1.18) V(-1.61) M(-1.73) P(-1.88) L(-2.73) C(-2.82) I(-3.31)
Gap (0)
Pos 6 T(3.313) A(3.313) S(1) G(0.620) P(0.433) D(0.355) C(-0.37) N(-0.37) E(-0.37) Q(-0.37) K(-0.37) H(-0.56) R(-1)
M(-1) I(-1.37) L(-1.37) V(-2) F(-2) Y(-2) W(-3)
Gap (2)
Pos 7 R(3.934) K(3.319) Q(3.261) E(0.702) N(-0.40) H(-0.57) S(-0.78) T(-0.78) M(-1.04) D(-1.29) A(-1.40) P(-1.78)
Y(-2.04) G(-2.40) L(-2.40) V(-3.04) W(-3.04) C(-3.40) I(-3.40) F(-3.40)
Gap (0)
Pos 8 Q(3.902) V(3.308) I(2.308) E(0.928) M(0.526) L(0.339) K(-0.02) R(-0.07) A(-0.47) S(-0.91) T(-0.91) N(-1.02)
D(-1.02) H(-1.02) Y(-1.18) C(-1.60) F(-1.60) P(-1.65) G(-2.65) W(-2.65)
//

===============================
 SLIM 157
===============================
ID           HNH.clust.0.2.1
Center             2vln_BA_0
AvSimToCtr 0.544
AvRMSDToCtr 0.915 A
Size         18
NumDistinct 10
FracDDI            1
FracPeptides       0
FracIntra    0
Species            ESCHERICHIA COLI (7), ESCHERICHIA COLI K12 (3)
Conservation       0.7

Members
      1bxi_BA_0 1emv_BA_0 2vlq_BA_0 2vlp_BA_0 2gze_BA_0 2gzg_BA_0 2gzi_BA_0 2vlo_BA_0 1fr2_BA_0 2gyk_FE_0
      2gzj_FE_0 2k5x_BA_0 1mz8_BA_0 1mz8_DC_0 2jaz_BA_0 2jaz_DC_0 7cei_BA_0 2erh_BA_0

Peptides

PartnerDomains
      Colicin_Pyocin
(2vln_BA_0,2gze_BA_0,2gzg_BA_0,2gzi_BA_0,2gyk_FE_0,1mz8_BA_0,1mz8_DC_0,2jaz_DC_0,7cei_BA_0,2erh_BA_0)

Dist Members Intf   Alignment
      2vln_BA_0     E     V     V   T     E     P     S     G       S   D     Y
      2gze_BA_0     E     V     V   T     E     P     S     G       S   D     A
      2gzg_BA_0     E     V     V   T     E     P     S     G       S   D     F
      2gzi_BA_0     E     A     V   T     E     P     S     G       S   D     Y
      2gyk_FE_0     E     V     V   T     E     P     S     G       S   A     Y
      1mz8_BA_0                                 P     D     G       T   D     Y
      1mz8_DC_0           D         D     L           G     T           D     Y
      2jaz_DC_0           D     L   D     L           G     T                 Y
      7cei_BA_0           D     L   D     L     G           T           Y     Y
        2erh_BA_0         D           Y     L                  Q                Y

Dist Members ResidueID Alignment
      2vln_BA_0   30    34    37      38    41    47     48    49    50   51    55
      2gze_BA_0   30    34    37      38    41    47     48    49    50   51    55
      2gzg_BA_0   30    34    37      38    41    47     48    49    50   51    55
      2gzi_BA_0   30    34    37      38    41    47     48    49    50   51    55
      2gyk_FE_0   30    34    37      38    41    47     48    49    50   51    55
      1mz8_BA_0                                   48     49    50    51   52    56
      1mz8_DC_0         31            35    38           50    51         52    56
      2jaz_DC_0         31    34      35    38           50    51               56
      7cei_BA_0         31    34      35    38    50           51         55    56
      2erh_BA_0         31            35    38                 51               56

Alignment Occupancy       0.5   0.9   0.7   0.9   0.9    0.7   0.8   1    0.6   0.8   1
Gap in betw Columns       3     2     0     2     5,11   0     0     0    0     0,3

SLIM   RegEx        [PG][SGD][GTQ][ST][DAY].{0,3}[YFA]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 22.8471551687491
SLIM   I=181997 Im=8525 Id=1 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 P(6.489) G(3.699) T(0.643) S(-1.13) A(-1.13) D(-1.35) N(-1.45) E(-1.45)   Q(-1.45) K(-1.45) V(-1.70) H(-2.35)
R(-2.35) M(-2.45) C(-3.35) Y(-3.35) I(-3.45) L(-3.45) W(-3.70) F(-4.13)
Gap (0)
Pos 1 G(4.397) D(3.711) S(3.317) T(0.776) N(0.505) A(0.452) E(0.235) Q(-0.46)   K(-0.57) V(-1.29) P(-1.39) H(-1.39)
R(-1.49) C(-1.61) M(-1.61) F(-2.49) Y(-2.49) I(-2.57) L(-2.61) W(-2.92)
Gap (0)
Pos 2 G(5.492) T(2.896) Q(2.722) S(0.415) D(0.127) E(0.113) P(-0.06) A(-0.29)   V(-0.42) K(-0.42) N(-0.73) H(-0.73)
R(-0.76) M(-1.42) C(-1.92) W(-2.21) Y(-2.23) F(-2.58) L(-2.73) I(-2.87)
Gap (0)
Pos 3 S(3.316) T(1.919) N(0.377) A(0.333) G(-0.25) D(-0.25) E(-0.51) Q(-0.51)   K(-0.51) P(-0.78) H(-1.25) C(-1.51)
R(-1.51) M(-1.51) I(-2.51) L(-2.51) V(-2.51) F(-2.51) Y(-2.51) W(-3.51)
Gap (0)
Pos 4 D(5.489) Y(4.697) A(1.714) E(1.500) F(0.718) T(0.519) N(0.519) H(-0.02)   S(-0.12) W(-0.28) Q(-0.39) G(-1.12)
K(-1.30) P(-1.33) C(-1.94) R(-2.02) M(-2.26) I(-2.26) L(-2.47) V(-2.52)
Gap (0,3)
Pos 5 Y(6.779) F(4.032) W(1.822) H(1.785) A(1.719) M(-0.84) I(-0.84) L(-0.84)   S(-0.93) V(-1.06) Q(-1.09) C(-1.50)
T(-1.84) N(-1.89) E(-1.89) R(-1.89) K(-1.89) G(-1.93) P(-2.54) D(-2.84)
//

===============================
 SLIM 158
===============================
ID           HRM.clust.0.15.0
Center             3c59_AB_0
AvSimToCtr 0.395
AvRMSDToCtr 1.254 A
Size         5
NumDistinct 4
FracDDI            0
FracPeptides       0.25
FracIntra    0
Species            NONE
Conservation       UNDEFINED

Members
      2qkh_AB_0 3c5t_AB_0 3c4m_AC_1 3c4m_BD_1 3h3g_AB_1

Peptides
      3c4m-C

PartnerDomains

Dist Members Intf Alignment
      3c59_AB_0   E     V       R     I     L     K     N     G      G     P      S
      2qkh_AB_0         Q       Q     V     L     L     A     Q
      3c4m_AC_1   S     R       V     L     K     L
      3h3g_AB_1         R       R     L     L     I     E

Dist Members ResidueID Alignment
      3c59_AB_0   16    19    20      23    26    27    28    29     30    31     32
      2qkh_AB_0         19    20      23    26    27    28    29
      3c4m_AC_1   17    20    21      24    27    28
      3h3g_AB_1         20    21      24    27    28    30

Alignment Occupancy       0.5   1     1     1     1     1     0.75   0.5   0.25   0.25   0.25
Gap in betw Columns       2     0     2     2     0     0,1   0

SLIM   RegEx        [SE]..[RQV][RQV]..[LIV]..[LK][LIK].{0,1}[ANE][QG]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 22.2712797091741
SLIM   I=181997 Im=7404 Id=2 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(3.620) S(2.631) D(0.740) Q(0.740) T(-0.07) N(-0.07) K(-0.07) A(-0.25) H(-1.07) R(-1.07) G(-1.25) P(-1.69)
M(-2.07) C(-2.33) Y(-2.69) I(-3.07) L(-3.07) V(-3.07) F(-3.07) W(-3.69)
Gap (2)
Pos 1 R(4.316) Q(3.650) V(2.617) I(1.621) K(1.483) E(0.867) M(0.107) L(-0.24)   N(-0.27) H(-0.27) A(-0.64) S(-0.75)
T(-0.75) D(-1.10) Y(-1.37) P(-1.64) C(-2.04) F(-2.04) G(-2.17) W(-2.64)
Gap (0)
Pos 2 R(4.316) Q(3.650) V(2.617) I(1.621) K(1.483) E(0.867) M(0.107) L(-0.24)   N(-0.27) H(-0.27) A(-0.64) S(-0.75)
T(-0.75) D(-1.10) Y(-1.37) P(-1.64) C(-2.04) F(-2.04) G(-2.17) W(-2.64)
Gap (2)
Pos 3 L(3.395) V(3.193) I(3.107) M(1.620) F(-0.17) A(-0.64) C(-1) Y(-1) S(-2)   T(-2) Q(-2.17) K(-2.17) R(-2.37) W(-
2.37) P(-2.64) E(-2.64) N(-3) H(-3) D(-3.37) G(-3.64)
Gap (2)
Pos 4 L(3.713) K(3.616) V(2.713) M(1.728) I(1.714) R(0.667) Q(-0.24) F(-0.27)   E(-0.33) A(-1) S(-1.04) T(-1.04) Y(-
1.17) C(-1.24) N(-1.24) P(-2.04) H(-2.04) W(-2.17) D(-2.24) G(-3.04)
Gap (0)
Pos 5 K(3.615) L(3.373) I(2.853) V(2.373) M(1.496) R(0.656) F(-0.27) Q(-0.27)   E(-0.33) A(-1) S(-1.04) T(-1.04) Y(-
1.17) C(-1.24) N(-1.24) P(-2.04) H(-2.04) D(-2.17) W(-2.37) G(-3.04)
Gap (0,1)
Pos 6 N(4.617) E(3.622) A(2.622) D(0.940) Q(0.783) S(0.475) K(0.021) T(-0.52)   R(-0.52) G(-0.62) H(-0.97) C(-1.32)
P(-1.52) M(-1.83) I(-2.14) L(-2.14) Y(-2.28) V(-2.83) F(-2.83) W(-3.52)
Gap (0)
Pos 7 G(4.614) Q(3.614) E(0.631) T(-0.07) R(-0.33) K(-0.33) S(-0.69) A(-1.07)   D(-1.07) N(-1.25) H(-1.25) V(-1.25)
M(-1.33) P(-2.07) Y(-2.25) W(-2.69) L(-3.25) C(-3.69) F(-3.69) I(-4.07)
//

===============================
 SLIM 159
===============================
ID           HTH_11.clust.0.2.0
Center             2vc0_AB_0
AvSimToCtr 0.601
AvRMSDToCtr 0.640 A
Size         19
NumDistinct 4
FracDDI            0.5
FracPeptides       0
FracIntra    0
Species            MYCOBACTERIUM TUBERCULOSIS (2), ESCHERICHIA COLI (1), PYROCOCCUS HORIKOSHII (1)
Conservation       0.5

Members
      2cg4_AB_1 2cg4_BA_1 2dbb_AB_0 2dbb_BA_0 2ivm_AB_0 2vby_AB_0 2vbz_AB_0 2vc1_AB_0 2vbx_AB_0 2ivm_BA_0
      2vc0_BA_0 2vc1_BA_0 2vbx_BA_0 2vby_BA_0 2vbz_BA_0 2vbw_AB_0 2vbw_BA_0 2qz8_AD_0 2qz8_DA_0

Peptides

PartnerDomains
        HTH_11 (2cg4_AB_1,2dbb_AB_0)
        HTH_8 (2cg4_AB_1)

Dist Members Intf   Alignment
      2vc0_AB_0     L     A     A      D    G     R     A      T      L      G      Y    S    A    R    I    N    P
      A     V       Q
      2cg4_AB_1     L     M     G      N    A                                G      A    R    I    D    V    S
      2dbb_AB_0     L     S     E      N    S     R     L      T      Y      K      F    T    I    I    P    D
      K     L       I
      2ivm_AB_0     L     A     A      D    G     R     G      T      L      G      Y    S    A    R    I    N    P
      A     V       Q

Dist Members ResidueID Alignment
      2vc0_AB_0   16    17    18       19   20    21    22     23     24     53     54   55   56   57   58   59
      60    62    63    147
      2cg4_AB_1   17    18    19       20   21                               54     55   56   57   58   59   60
      2dbb_AB_0   18    19    20       21   22    23    24     25     26     55     56   57   58   59   60   61
      64    65    151
      2ivm_AB_0   16    17    18       19   20    21    22     23     24     53     54   55   56   57   58   59
      60    62    63    147

Alignment Occupancy     1       1      1    1     1     0.75   0.75   0.75   0.75   1    1    1    1    1    1    1
      0.5   0.75 0.75 0.75
Gap in betw Columns     0       0      0    0     0     0      0      0      28     0    0    0    0    0    0    0
      1     0     83,85

SLIM   RegEx        [GK][YFA][STR][AI][RDI][IPV][NSD]P.[AK][VL]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 24.0134084638876
SLIM   I=181997 Im=5385 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 G(5.712) K(3.616) T(0.827) R(0.667) S(0) A(-0.17) E(-0.24) Q(-0.24) V(-0.27) D(-1) N(-1.04) P(-1.64) H(-1.64)
M(-2.04) W(-2.17) Y(-2.64) C(-3) F(-3) L(-3.04) I(-3.64)
Gap (0)
Pos 1 Y(6.316) F(4.708) A(2.621) W(1.478) H(1.340) S(-0.24) M(-0.64) I(-0.64) L(-0.64) C(-1.04) V(-1.17) Q(-1.24)
G(-1.24) T(-1.64) N(-1.75) E(-1.75) R(-1.75) K(-1.75) P(-2.10) D(-2.64)
Gap (0)
Pos 2 R(3.621) S(3.334) T(2.714) K(0.954) N(0.620) A(0.433) Q(0.357) G(0.193) D(0.193) E(0) P(-0.10) H(-0.37) M(-1)
C(-1.24) L(-2) Y(-2) I(-2.17) V(-2.17) F(-2.17) W(-3)
Gap (0)
Pos 3 A(3.313) I(3.313) L(1.355) M(0.433) S(0.355) V(0.355) C(-0.37) F(-0.56) G(-0.67) T(-1.37) Y(-1.37) P(-1.56)
N(-1.56) E(-1.56) Q(-1.56) R(-1.56) K(-1.56) D(-2.37) H(-2.37) W(-3)
Gap (0)
Pos 4 D(4.614) R(4.307) I(2.616) K(1.334) E(0.858) L(0.652) Q(0.483) N(0.175) T(-0.10) M(-0.13) V(-0.33) H(-0.50)
S(-0.75) A(-1.17) F(-1.24) P(-1.75) Y(-1.75) G(-1.80) C(-2.04) W(-3.17)
Gap (0)
Pos 5 P(5.613) I(3.476) V(2.710) L(1.478) M(0.728) T(-0.24) F(-0.51) A(-0.64) C(-1.24) Y(-1.24) S(-1.64) E(-1.89)
Q(-1.89) K(-1.89) N(-2.04) D(-2.04) H(-2.64) R(-2.64) G(-2.89) W(-3.17)
Gap (0)
Pos 6 N(5.313) D(4.629) S(2.725) E(0.954) T(0.620) Q(0) G(-0.17) K(-0.17) A(-0.24) R(-0.46) H(-1) P(-1.37) M(-1.75)
C(-2.04) Y(-2.17) I(-2.64) V(-2.64) F(-2.64) L(-2.75) W(-3.64)
Gap (0)
Pos 7 P(6.306) T(0.306) S(-1.69) A(-1.69) N(-1.69) D(-1.69) E(-1.69) Q(-1.69) K(-1.69) G(-2.69) H(-2.69) R(-2.69)
M(-2.69) V(-2.69) C(-3.69) I(-3.69) L(-3.69) Y(-3.69) F(-4.69) W(-4.69)
Gap (1)
Pos 8 K(3.618) A(3.310) R(0.708) S(0.475) E(-0.14) Q(-0.14) G(-0.62) C(-0.66) T(-0.83) N(-0.83) P(-1.28) M(-1.28)
L(-1.52) I(-1.62) D(-1.83) H(-1.83) Y(-2.28) V(-2.52) F(-2.52) W(-3.28)
Gap (0)
Pos 9 V(3.475) L(2.708) I(2.475) M(1.165) A(-0.52) F(-0.83) C(-1.28) Y(-1.28) S(-2.28) T(-2.28) Q(-2.28) K(-2.28)
P(-2.52) E(-2.52) R(-2.83) W(-2.83) N(-3.28) H(-3.28) G(-3.52) D(-3.52)
//

===============================
 SLIM 160
===============================
ID           HTH_3.clust.0.2.2
Center             2r1j_LR_0
AvSimToCtr 0.303
AvRMSDToCtr 1.795 A
Size         9
NumDistinct 8
FracDDI            0.75
FracPeptides       0
FracIntra    0
Species            ENTEROCOCCUS FAECALIS (4), BACTERIOPHAGE 434 (2), ENTEROBACTERIA PHAGE P22 (1), PHAGE 434 (1)
Conservation       0.5

Members
      1per_LR_0 2or1_RL_0 3cro_LR_0 3cro_RL_0 1utx_AB_0 1utx_BA_0 2gzu_AB_0 2gzu_BA_0 2r1j_RL_0

Peptides

PartnerDomains
      HTH_3 (2r1j_LR_0,1per_LR_0,2or1_RL_0,1utx_AB_0,1utx_BA_0,2gzu_BA_0)

Dist Members Intf Alignment
      2r1j_LR_0   E     P     N     G     E     L     L     K     P     D     L
      1per_LR_0   R           R                 L     P           V
        2or1_RL_0   K                                     P           V            L
        3cro_LR_0                R                 L      F           P      V     Q
        1utx_AB_0   N     P      S     L           A                         Q
        1utx_BA_0   N     P      S     L           A      L     Y     L      E     F
        2gzu_AB_0         P      S     L                              F      W
        2gzu_BA_0   N     P      S     L     L                        W      Q

Dist Members ResidueID Alignment
      2r1j_LR_0   44    45    46       47    48    50     51    55    61     62    65
      1per_LR_0   41          43                   45     46          56
      2or1_RL_0   40                                      46          56           60
      3cro_LR_0               43                   45     46          56     57    60
      1utx_AB_0   40    41    42       43          46                        62
      1utx_BA_0   40    41    42       43          46     47    51    57     58    61
      2gzu_AB_0         107   108      109                            127    129
      2gzu_BA_0   40    41    42       43    47                       63     64

Alignment Occupancy       0.75   0.625 0.875 0.625 0.25   0.625 0.625 0.25   0.875 0.75   0.5
Gap in betw Columns       0      0     0     2     0      9     0,1   2

SLIM   RegEx        [NKRE]P[SRN][LG]..[LA][PLF]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 20.1240282763294
SLIM   I=181997 Im=5726 Id=32 Idm=3
SLIM   PSSM p-value 0.0611197106311167

PSSM Listing
Pos 0 N(5.021) K(3.005) R(2.994) E(2.964) D(0.696) Q(0.682) S(0.274) T(-0.39)      H(-0.83) G(-0.85) A(-1.66) P(-1.83)
M(-1.83) Y(-2.28) L(-2.83) I(-3.28) V(-3.28) F(-3.28) C(-3.39) W(-3.66)
Gap (0)
Pos 1 P(6.529) T(0.529) S(-1.47) A(-1.47) N(-1.47) D(-1.47) E(-1.47) Q(-1.47)      K(-1.47) G(-2.47) H(-2.47) R(-2.47)
M(-2.47) V(-2.47) C(-3.47) I(-3.47) L(-3.47) Y(-3.47) F(-4.47) W(-4.47)
Gap (0)
Pos 2 N(3.951) R(3.621) S(3.322) K(0.905) T(0.454) A(0.383) Q(0.265) E(-0.13)      D(-0.13) G(-0.41) H(-0.73) M(-1.22)
P(-1.44) C(-1.59) Y(-2.13) L(-2.22) I(-2.44) V(-2.44) F(-2.44) W(-3.22)
Gap (0)
Pos 3 G(3.920) L(3.306) V(2.319) M(1.308) I(1.307) F(-0.68) T(-0.89) A(-1.17)      S(-1.64) C(-1.65) Y(-1.65) Q(-2.47)
R(-2.47) K(-2.47) W(-2.47) D(-2.89) P(-3.17) N(-3.17) E(-3.17) H(-3.17)
Gap (2)
Pos 4 L(3.023) A(2.623) V(2.023) M(1.051) I(1.051) S(-0.31) F(-0.89) C(-0.94)      G(-1.35) Y(-1.76) T(-1.94) Q(-1.94)
R(-1.94) K(-1.94) P(-2.20) N(-2.20) E(-2.20) W(-2.76) H(-2.94) D(-3.20)
Gap (0)
Pos 5 P(5.613) F(3.925) L(2.623) V(1.629) Y(0.961) M(0.696) I(0.685) T(-0.31)      W(-0.97) A(-1.60) S(-1.94) Q(-2.02)
K(-2.02) C(-2.10) N(-2.20) E(-2.20) D(-2.27) H(-2.38) R(-2.60) G(-3.10)
//
===============================
 SLIM 161
===============================
ID           HTH_8.clust.0.2.0
Center             1etv_BA_0
AvSimToCtr 0.606
AvRMSDToCtr 0.672 A
Size         31
NumDistinct 6
FracDDI            0
FracPeptides       0
FracIntra    0
Species            AQUIFEX AEOLICUS (3), ESCHERICHIA COLI (2), SALMONELLA TYPHIMURIUM (1)
Conservation       0.5

Members
      1etk_AB_0 1etx_AB_0 1etv_AB_0 1ety_AB_0 1etw_AB_0 1etk_BA_0 1etx_BA_0 1ety_BA_0 1etw_BA_0 1fia_BA_0
      1fia_AB_0 1eto_AB_0 1etq_BA_0 1etq_CD_0 3fis_BA_0 4fis_BA_0 1fip_AB_0 1fip_BA_0 3fis_AB_0 4fis_AB_0
      1etq_DC_0 1etq_AB_0 1eto_BA_0 1f36_AB_0 1f36_BA_0 3e7l_AB_0 3e7l_DC_0 3e7l_CD_0 3e7l_BA_0 1ntc_AB_0
      1ntc_BA_0

Peptides

PartnerDomains

Dist Members Intf Alignment
      1etv_BA_0   L     P     L     R     V     K     L     K     F     L     V     N       D    L    Y     E    V
      L     V
      1f36_AB_0   L     P     L     R     V     K     L     E     F           V     N       D    L    Y     E    V
      L     V
      3e7l_AB_0                                       L                                               L          A
      K     F
      3e7l_DC_0                                       L                                               L     K    A
      K     F
      3e7l_BA_0                                       L                                          E    L     K    A
      K     E
      1ntc_AB_0                                                         R     H     Q       N    L    L     S    A
      Q     L

Dist Members ResidueID Alignment
      1etv_BA_0   11    26    27    28    31    32    35    36    39    42    47    48      49   50   51    52
      54    55    58
      1f36_AB_0   11    26    27    28    31    32    35    36    39          47    48      49   50   51    52
      54    55    58
        3e7l_AB_0                                       23                                              28
        31    32    35
        3e7l_DC_0                                       23                                              28    29
        31    32    35
        3e7l_BA_0                                       23                                        27    28    29
        31    32    36
        1ntc_AB_0                                                         415   418   419   420   421   422   423
        425   426   429

Alignment Occupancy       0.333 0.333 0.333 0.333 0.333 0.333 0.833 0.333 0.333 0.333 0.5   0.5   0.5   0.666 1
      0.833 1     1       1
Gap in betw Columns       7,11 0      0     0     0     0     1     0     2,3

SLIM   RegEx        [VH][NQ][DN][LE][LY][KES].[AV][KLQ].{2,3}[FVLE]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 23.435704009021
SLIM   I=181997 Im=8826 Id=7 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 H(6.208) V(2.902) I(1.902) Y(0.303) M(-0.07) L(-0.08) N(-0.75) D(-0.75)   A(-1.03) T(-1.55) E(-1.55) Q(-1.55)
F(-1.69) R(-1.69) C(-2.03) S(-2.24) K(-2.24) P(-2.69) G(-3.24) W(-3.24)
Gap (0)
Pos 1 N(4.902) Q(3.221) E(0.447) S(0.070) D(0.070) R(-0.24) K(-0.24) T(-0.69)   G(-1.03) H(-1.24) M(-1.55) P(-2.24)
A(-2.24) Y(-2.24) L(-3.24) V(-3.24) W(-3.55) C(-3.69) I(-3.69) F(-3.69)
Gap (0)
Pos 2 D(4.904) N(4.221) E(0.966) T(0.070) S(-0.24) Q(-0.69) G(-1.24) K(-1.24)   R(-1.55) H(-1.69) P(-1.92) A(-2.69)
M(-3.24) Y(-3.24) C(-3.69) I(-3.69) V(-3.69) F(-3.69) L(-4.24) W(-4.69)
Gap (0)
Pos 3 L(3.307) E(3.209) V(2.307) M(1.312) I(1.309) Q(0.261) D(0.215) K(-0.65)   F(-0.67) A(-1.40) S(-1.45) T(-1.45)
R(-1.45) Y(-1.57) N(-1.65) H(-1.65) C(-1.67) P(-2.45) W(-2.57) G(-3.45)
Gap (0)
Pos 4 Y(5.902) L(3.597) V(2.603) F(1.996) M(1.619) I(1.619) W(0.937) H(0.914)   C(-1.23) A(-1.23) Q(-1.54) S(-2) T(-2)
R(-2) K(-2) N(-2.54) E(-2.54) P(-3) G(-3.54) D(-3.54)
Gap (0)
Pos 5 E(3.922) K(3.922) S(2.278) Q(1.262) R(1.050) D(1.012) T(0.113) N(0.113)   A(-0.35) H(-0.65) P(-1.18) G(-1.35)
M(-1.47) Y(-2.18) L(-2.47) C(-2.47) I(-2.88) V(-2.88) F(-2.88) W(-3.18)
Gap (1)
Pos 6 A(3.603) V(2.906) I(1.937) S(0.619) M(0.140) L(0.140) C(-0.23) G(-0.38)   T(-1.23) P(-1.23) E(-1.23) Q(-1.23)
K(-1.23) N(-1.33) R(-1.33) F(-1.54) Y(-1.54) D(-2.23) H(-2.23) W(-3)
Gap (0)
Pos 7 K(4.313) Q(3.263) L(2.906) V(1.908) R(1.433) M(1.034) E(0.958) I(0.914)   S(-0.33) T(-0.33) N(-0.38) A(-1) H(-
1.00) F(-1.00) D(-1.03) P(-1.33) Y(-1.37) C(-1.85) G(-2.33) W(-2.37)
Gap (2,3)
Pos 8 F(4.903) E(3.211) V(3.076) L(2.336) I(2.112) Y(1.931) M(0.913) Q(0.274) D(0.237) W(-0.04) K(-0.62) A(-0.69)
H(-1.15) S(-1.27) T(-1.27) C(-1.46) R(-1.50) N(-1.56) P(-2.11) G(-2.83)
//

===============================
 SLIM 162
===============================
ID           Hemagglutinin.clust.0.15.5
Center             1hgj_ED_0
AvSimToCtr 0.504
AvRMSDToCtr 1.176 A
Size         72
NumDistinct 8
FracDDI            1
FracPeptides       0
FracIntra    0
Species            INFLUENZA A VIRUS (3), INFLUENZA VIRUS (1)
Conservation       0.75

Members
      1hgd_AF_0   1hge_AF_0   1hgj_AF_0   1hgd_ED_0   1hge_ED_0   1hgi_AF_0   1hgi_ED_0   1hgd_CB_0   1hge_CB_0   1hgj_CB_0
      1hgi_CB_0   1hgf_AF_0   1hgf_ED_0   1hgf_CB_0   1hgg_AF_0   1hgg_ED_0   1hgg_CB_0   1hgh_AF_0   1hgh_ED_0   1hgh_CB_0
      2hmg_AF_0   2hmg_ED_0   2hmg_CB_0   3hmg_AF_0   3hmg_ED_0   3hmg_CB_0   4hmg_AF_0   4hmg_ED_0   4hmg_CB_0   1mql_AH_0
      1mqm_AH_0   1mql_GE_0   1mqm_DB_0   1mqm_GE_0   1mql_DB_0   3eym_AF_0   3eym_CB_0   3eym_ED_0   1rd8_AD_0   1rd8_CF_0
      1rd8_EB_0   1ru7_AF_0   1ru7_GL_0   1ru7_CB_0   1ru7_IH_0   1ru7_ED_0   1rvz_ED_0   1rvz_IH_0   1ru7_KJ_0   1rvx_AF_0
      1rvx_GL_0   1rvz_AF_0   1rvz_KJ_0   1rvx_CB_0   1rvx_IH_0   1rvz_GL_0   1rvz_CB_0   1rvx_ED_0   1rvx_KJ_0   1ruy_HM_0
      1ruy_JI_0   1ruy_LK_0   1rvt_HM_0   1rvt_LK_0   1rv0_JI_0   1rvt_JI_0   2fk0_AD_0   2fk0_EB_0   2fk0_GJ_0   2fk0_CF_0
      2fk0_IL_0   2fk0_KH_0

Peptides

PartnerDomains
      Hemagglutinin (1hgj_ED_0,1rd8_AD_0,1rd8_CF_0,1ru7_AF_0,1ruy_HM_0,1ruy_JI_0,1rvt_JI_0,2fk0_AD_0)
      Val_tRNA-synt_C (1hgj_ED_0)

Dist Members Intf Alignment
      1hgj_ED_0   S     E         V       E     G       R     I       D       Y
      1rd8_AD_0                                 R       R     I       N       Y
      1rd8_CF_0         N                 E                   R       N       Y
      1ru7_AF_0                                 K       R     M       N       Y
      1ruy_HM_0         K                 E                   R       N
      1ruy_JI_0         K                 E     K       R     I       N
      1rvt_JI_0         N                 E     R       R
      2fk0_AD_0         N                 E     R       R     I       N       Y
Dist Members ResidueID Alignment
      1hgj_ED_0   71    72    73       74    75     76     77     79    94
      1rd8_AD_0                              75     76     77     79    94
      1rd8_CF_0         72             74                  76     79    94
      1ru7_AF_0                              575    576    577    579   594
      1ruy_HM_0         572            574                 576    579
      1ruy_JI_0         572            574   575    576    577    579
      1rvt_JI_0         572            574   575    576
      2fk0_AD_0         72             74    75     76     77     79    94

Alignment Occupancy       0.125 0.75   0.125 0.75   0.75   0.75   0.875 0.875 0.625
Gap in betw Columns       1     0      0     0      1,2    14

SLIM   RegEx        [NKE].E[RKG]R[IRM].{1,2}[ND]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 19.5822548819642
SLIM   I=181997 Im=9884 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 N(5.021) K(3.632) E(2.975) R(0.853) D(0.710) Q(0.682) S(0.332) T(-0.28)         G(-0.85) H(-1.03) P(-1.66) A(-1.66)
M(-1.83) Y(-2.28) L(-2.83) I(-3.28) V(-3.28) F(-3.28) C(-3.39) W(-3.66)
Gap (1)
Pos 1 E(4.712) D(1.712) Q(1.712) K(0.712) S(-0.28) T(-0.28) N(-0.28) H(-0.28)         R(-0.28) P(-1.28) A(-1.28) G(-2.28)
M(-2.28) Y(-2.28) I(-3.28) L(-3.28) V(-3.28) F(-3.28) W(-3.28) C(-4.28)
Gap (0)
Pos 2 R(4.052) G(3.922) K(3.686) Q(0.539) E(0.069) T(-0.31) N(-0.44) S(-0.66)         H(-0.72) A(-1.03) M(-1.44) D(-1.66)
P(-1.83) V(-1.85) Y(-2.39) L(-2.44) W(-3.03) C(-3.28) F(-3.28) I(-3.39)
Gap (0)
Pos 3 R(4.712) K(1.712) Q(0.712) N(-0.28) E(-0.28) H(-0.28) S(-1.28) T(-1.28)         A(-1.28) M(-1.28) P(-2.28) G(-2.28)
D(-2.28) L(-2.28) Y(-2.28) C(-3.28) I(-3.28) V(-3.28) F(-3.28) W(-3.28)
Gap (0)
Pos 4 R(3.615) I(3.319) M(2.995) L(1.537) K(0.651) V(0.328) Q(-0.18) F(-0.45)         A(-1.13) N(-1.23) E(-1.23) H(-1.23)
Y(-1.33) C(-1.41) S(-1.58) T(-1.58) W(-2.48) P(-2.58) D(-2.73) G(-3.01)
Gap (1,2)
Pos 5 N(5.713) D(3.960) S(0.771) E(0.514) T(0.085) Q(-0.13) G(-0.22) K(-0.22)         R(-0.26) H(-1.13) P(-1.91) A(-2.13)
M(-2.22) Y(-2.22) C(-3.13) I(-3.13) V(-3.13) F(-3.13) L(-3.22) W(-4.13)
//

===============================
 SLIM 163
===============================
ID          Hemagglutinin.clust.0.15.6
Center            1hgd_BC_0
AvSimToCtr 0.505
AvRMSDToCtr 1.041   A
Size         66
NumDistinct 6
FracDDI             1
FracPeptides        0
FracIntra    0
Species             INFLUENZA A VIRUS (3), INFLUENZA VIRUS (1)
Conservation        0.75

Members
      1hge_BC_0   1hgj_BC_0   1hgf_BC_0   1hgi_BC_0   1hgh_BC_0   1hgd_DE_0   1hge_DE_0   1hgj_DE_0   1hgf_DE_0   1hgi_DE_0
      1hgh_DE_0   1hgd_FA_0   1hge_FA_0   1hgj_FA_0   1hgi_FA_0   1hgh_FA_0   1hgf_FA_0   1hgg_BC_0   1hgg_DE_0   1hgg_FA_0
      1mql_BD_0   1mql_EG_0   1mqm_BD_0   1mqm_EG_0   1mql_HA_0   1mqm_HA_0   3eym_FA_0   3eym_BC_0   3eym_DE_0   2hmg_BC_0
      2hmg_DE_0   2hmg_FA_0   3hmg_BC_0   3hmg_FA_0   3hmg_DE_0   4hmg_BC_0   4hmg_DE_0   4hmg_FA_0   1rd8_BE_0   1rd8_DA_0
      1rd8_FC_0   1ru7_BC_0   1ru7_HI_0   1ru7_FA_0   1ru7_LG_0   1ru7_DE_0   1rvz_DE_0   1rvz_HI_0   1ru7_JK_0   1rvx_FA_0
      1rvx_LG_0   1rvz_FA_0   1rvz_JK_0   1rvx_BC_0   1rvx_HI_0   1rvz_LG_0   1rvz_BC_0   1rvx_DE_0   1rvx_JK_0   2ibx_FC_0
      2fk0_BE_0   2fk0_JG_0   2fk0_DA_0   2fk0_FC_0   2fk0_HK_0   2fk0_LI_0

Peptides

PartnerDomains
      Hemagglutinin (1hgd_BC_0,1rd8_BE_0,1rd8_FC_0,2ibx_FC_0,2fk0_BE_0,2fk0_HK_0)

Dist Members Intf   Alignment
      1hgd_BC_0     D     A       S       S     L       R     W       I       K     M       K
      1rd8_BE_0     D     E       E       E     Q                                           K
      1rd8_FC_0     D     E       E       E     Q       K     W                             K
      2ibx_FC_0     D     E       E       H     L
      2fk0_BE_0     D     E       E       H     L             W                             K
      2fk0_HK_0     D     E       E       H     L             W                     K       K

Dist Members ResidueID Alignment
      1hgd_BC_0   104   106   107         110   111     208   234     236     238   260     307
      1rd8_BE_0   104   106   107         110   111                                         307
      1rd8_FC_0   104   106   107         110   111     208   234                           307
      2ibx_FC_0   101   103   104         107   108
      2fk0_BE_0   104   106   107         110   111           234                           307
      2fk0_HK_0   104   106   107         110   111           234                   262     307

Alignment Occupancy       1       1       1     1       1     0.333 0.666 0.166 0.166 0.333 0.833
Gap in betw Columns       1       0       2     0       122   72

SLIM RegEx        D.[EA][ES]..[HES][LQ]
SLIM Coverage           0.666666666666667
SLIM PSSM Match Cutoff 19.363828554884
SLIM I=181997 Im=12289 Id=0 Idm=0
SLIM PSSM p-value 1

PSSM Listing
Pos 0 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3)               M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (1)
Pos 1 E(4.818) A(2.241) Q(1.827) D(1.821) K(0.844) S(0.251) T(-0.11) N(-0.11)               R(-0.11) H(-0.15) P(-1) G(-1.27) C(-
1.70) M(-1.74) Y(-2) I(-2.27) L(-2.27) V(-2.74) F(-2.74) W(-3)
Gap (0)
Pos 2 E(4.819) S(2.295) D(1.844) Q(1.844) K(0.888) T(0.251) N(0.251) H(-0.11)               R(-0.11) A(-0.27) P(-1) G(-1.27) M(-
1.74) Y(-2) C(-2.56) I(-2.74) L(-2.74) V(-2.74) F(-2.74) W(-3)
Gap (2)
Pos 3 H(7.307) E(3.914) S(2.263) D(1.383) Y(1.325) Q(1.140) N(0.763) T(0.251)              K(0.228) R(-0.11) A(-0.44) G(-1.27)
P(-1.37) F(-1.50) M(-1.74) V(-2.23) W(-2.37) C(-2.38) I(-2.74) L(-2.74)
Gap (0)
Pos 4 Q(3.903) L(3.595) V(2.597) M(1.660) I(1.597) E(0.914) R(-0.00) K(-0.00)               F(-0.38) S(-0.85) T(-0.85) A(-1) Y(-1)
N(-1.00) H(-1.00) D(-1.06) C(-1.33) P(-1.85) W(-2) G(-2.85)
//

===============================
 SLIM 164
===============================
ID           Hemagglutinin.clust.0.2.0
Center             1rvx_BE_0
AvSimToCtr 0.539
AvRMSDToCtr 0.912 A
Size         80
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            INFLUENZA A VIRUS (3), INFLUENZA VIRUS (1)
Conservation       0.75

Members
      1hgd_BE_0   1hgd_DA_0   1hgd_FC_0   1hge_BE_0   1hge_DA_0   1hge_FC_0   1hgj_BE_0   1hgj_DA_0   1hgj_FC_0   1hgi_BE_0
      1hgi_DA_0   1hgi_FC_0   1hgh_BE_0   1hgh_DA_0   1hgh_FC_0   1hgg_BE_0   1hgg_DA_0   1hgg_FC_0   1hgf_BE_0   1hgf_DA_0
      1hgf_FC_0   2hmg_BE_0   2hmg_DA_0   2hmg_FC_0   3hmg_BE_0   3hmg_DA_0   3hmg_FC_0   3eym_BE_0   3eym_DA_0   3eym_FC_0
      4hmg_BE_0   4hmg_DA_0   4hmg_FC_0   1mql_BG_0   1mql_EA_0   1mqm_BG_0   1mqm_EA_0   1mql_HD_0   1mqm_HD_0   1rd8_BC_0
      1rd8_DE_0   1rd8_FA_0   1ru7_BE_0   1ru7_HK_0   1rvx_HK_0   1rvz_HK_0   1rvz_LI_0   1rvx_DA_0   1rvz_DA_0   1rvz_BE_0
      1ru7_FC_0   1ru7_LI_0   1rvx_FC_0   1rvx_LI_0   1rvz_FC_0   1rvz_JG_0   1ru7_DA_0   1ru7_JG_0   1rvx_JG_0   1ruy_IL_0
      1ruy_KH_0   1ruy_MJ_0   1rv0_IL_0   1rv0_MJ_0   1rvt_IL_0   1rvt_KH_0   1rvt_MJ_0   1rv0_KH_0   1ruz_IL_0   1ruz_MJ_0
      1ruz_KH_0   2ibx_BC_0   2ibx_FA_0   2ibx_DE_0   2fk0_BC_0   2fk0_FA_0   2fk0_HI_0   2fk0_DE_0   2fk0_JK_0   2fk0_LG_0
Peptides

PartnerDomains
      Hemagglutinin (1rvx_BE_0,1hgd_BE_0,2ibx_BC_0,2ibx_DE_0)

Dist Members Intf   Alignment
      1rvx_BE_0     T     V     L    E      K
      1hgd_BE_0     T     I     T    D      D
      2ibx_BC_0     T     I     M    E
      2ibx_DE_0     T     I     M    E      K

Dist Members ResidueID Alignment
      1rvx_BE_0   22    23    24     25     26
      1hgd_BE_0   28    29    30     31     32
      2ibx_BC_0   22    23    24     25
      2ibx_DE_0   22    23    24     25     26

Alignment Occupancy       1     1    1      1    0.75
Gap in betw Columns       0     0    0      0

SLIM   RegEx        T[IV][MTL][ED][KD]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 16.6663532363861
SLIM   I=181997 Im=6320 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 1 I(3.827) V(2.752) L(1.827) M(1) F(-0.17) A(-0.64) C(-1) Y(-1) S(-2) T(-2) P(-2.64) E(-2.64) Q(-2.64) K(-2.64)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.64)
Gap (0)
Pos 2 M(4.332) L(2.855) T(2.629) V(1.633) I(1.175) S(-0.10) Q(-0.24) F(-0.24) P(-0.27) G(-0.34) D(-0.34) K(-0.75)
C(-1) A(-1) N(-1.10) E(-1.10) H(-1.10) R(-1.17) Y(-1.17) W(-1.46)
Gap (0)
Pos 3 E(4.728) D(4.667) Q(1.756) K(0.756) T(0.357) N(0.357) S(0) H(-0.17) R(-0.24) P(-1) A(-1.17) G(-1.64) M(-2.17)
Y(-2.17) I(-3) V(-3) F(-3) L(-3.17) W(-3.17) C(-3.64)
Gap (0)
Pos 4 D(4.615) K(4.308) R(1.315) E(1.165) Q(0.475) T(0.165) N(0.165) S(-0.28) P(-1.28) H(-1.28) A(-1.52) M(-1.62)
G(-1.83) Y(-2.52) L(-2.62) C(-3.28) I(-3.28) V(-3.28) F(-3.28) W(-3.52)
//

===============================
 SLIM 165
===============================
ID           Hemagglutinin.clust.0.2.2
Center             1hge_CE_0
AvSimToCtr 0.539
AvRMSDToCtr 0.980 A
Size         80
NumDistinct 12
FracDDI            0.333333333333333
FracPeptides       0
FracIntra    0
Species            INFLUENZA A VIRUS (7), INFLUENZA VIRUS (2)
Conservation       0.777777777777778

Members
      1hgd_AC_0   1hge_AC_0   1hgj_AC_0   1hgh_AC_0   1hgi_AC_0   1hgg_AC_0   1hgd_CE_0   1hgj_CE_0   1hgd_EA_0   1hge_EA_0
      1hgj_EA_0   1hgg_CE_0   1hgg_EA_0   1hgh_CE_0   1hgh_EA_0   1hgi_CE_0   1hgi_EA_0   1hgf_AC_0   1hgf_CE_0   1hgf_EA_0
      4hmg_AC_0   4hmg_CE_0   4hmg_EA_0   2hmg_AC_0   2hmg_CE_0   2hmg_EA_0   3hmg_AC_0   3hmg_CE_0   3hmg_EA_0   3eym_EA_0
      1mql_AD_0   1mqm_AD_0   1mql_DG_0   1mql_GA_0   1mqm_GA_0   1mqm_DG_0   3eym_AC_0   3eym_CE_0   1rd8_AE_0   1rd8_CA_0
      1rd8_EC_0   1ru7_AC_0   1ru7_GI_0   1ru7_EA_0   1ru7_KG_0   1rvx_AC_0   1rvx_GI_0   1rvx_EA_0   1rvx_KG_0   1rvx_IK_0
      1rvz_AC_0   1rvz_EA_0   1rvz_IK_0   1rvx_CE_0   1rvz_CE_0   1rvz_GI_0   1rvz_KG_0   1ru7_CE_0   1ru7_IK_0   1ruy_HJ_0
      1rv0_HJ_0   1rvt_LH_0   1rvt_HJ_0   1ruy_LH_0   1rv0_LH_0   1rv0_JL_0   1rvt_JL_0   1ruy_JL_0   1ruz_HJ_0   1ruz_JL_0
      1ruz_LH_0   2fk0_AE_0   2fk0_IG_0   2fk0_EC_0   2fk0_GK_0   2fk0_CA_0   2fk0_KI_0   2ibx_AE_0   2ibx_CA_0   2ibx_EC_0

Peptides

PartnerDomains
      Hemagglutinin (1hge_CE_0,1rd8_AE_0,1rvx_AC_0,1rvz_GI_0)

Dist Members Intf   Alignment
      1hge_CE_0     N     R       T       S     T       R     R       S       Q     T       I     V       V       N
      1rd8_AE_0     S     Y       S       G     S       S     K               N     R             T       T       E
      1ru7_AC_0                   S       V     T       S                     N     R             T       I
      1rvx_AC_0     K             S       V     T       S                     N     R             T       I       E
      1rvz_AC_0                   S       V     T       S     N               N     R             T       I       E
      1rvz_GI_0     K             S       V     T       S     N               N     R             T       I       E
      1rv0_HJ_0                   S       G     S       S                     D     R             T       T
      1rvt_LH_0                   S       G     S       S                     D     R             T       T       E
      2fk0_AE_0                   S       G     T       S             T       N     R             D
      2fk0_IG_0                   S       G     T       S     T       L       N     R             A       N       E
      2fk0_GK_0                   S       G     T       S     T       L       N     R             D
      2ibx_EC_0                   S       G     T       S     T       L       N     R             D       N       E

Dist Members ResidueID Alignment
      1hge_CE_0   165   201   203         205   206     207   208     209     210   212     214   242     244     246
      1rd8_AE_0   165   201   203         205   206     207   208             210   212           242     244     246
      1ru7_AC_0               203         205   206     207                   210   212           242     244
        1rvx_AC_0   165         203   205   206   207                 210   212       242   244   246
        1rvz_AC_0               203   205   206   207     208         210   212       242   244   246
        1rvz_GI_0   165         203   205   206   207     208         210   212       242   244   246
        1rv0_HJ_0               203   205   206   207                 210   212       242   244
        1rvt_LH_0               203   205   206   207                 210   212       242   244   246
        2fk0_AE_0               203   205   206   207           208   210   212       241
        2fk0_IG_0               203   205   206   207     208   209   210   212       242   244   246
        2fk0_GK_0               203   205   206   207     208   209   210   212       241
        2ibx_EC_0               203   205   206   207     208   209   210   212       241   244   246

Alignment Occupancy       0.333 0.166 1     1     1       1     0.583 0.416 1     1   0.083 1     0.833 0.666
Gap in betw Columns       1     0     0     0     1       1     28,29 1,2   1

SLIM   RegEx        [ST].[GVS][TS][SR][TNKR].[NDQ].[RT]
SLIM   Coverage           0.916666666666667
SLIM   PSSM Match Cutoff 19.5586025241765
SLIM   I=181997 Im=14136 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 S(3.917) T(1.951) N(0.945) A(0.925) G(0.133) D(0.133) E(0) Q(0) K(0) P(-0.57) H(-0.86) C(-1) R(-1) M(-1) I(-2)
L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (1)
Pos 1 G(5.461) V(2.933) I(1.904) S(1.644) T(0.619) A(0.133) M(-0.03) L(-0.07) N(-1.13) D(-1.15) E(-1.57) Q(-1.57)
K(-1.57) C(-1.70) F(-1.81) Y(-1.81) P(-1.86) H(-2.06) R(-2.06) W(-2.30)
Gap (0)
Pos 2 T(3.728) S(2.752) G(0.827) D(0.827) P(0.756) N(0.357) E(0) Q(0) K(0) A(-0.04) H(-0.17) C(-1) R(-1) M(-1) I(-2)
L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 3 S(3.913) R(2.541) N(0.945) T(0.925) A(0.925) K(0.426) Q(0.133) E(0) G(-0.07) D(-0.07) H(-0.86) M(-1) P(-1.05)
C(-1.07) L(-2) Y(-2) I(-2.05) V(-2.05) F(-2.05) W(-3)
Gap (0)
Pos 4 N(4.214) T(2.634) K(2.595) R(2.583) S(0.220) D(0.160) Q(-0.13) G(-0.14) P(-0.29) E(-0.31) H(-0.85) A(-1.73)
M(-1.73) C(-2.22) Y(-2.53) L(-2.73) I(-2.98) V(-2.98) F(-2.98) W(-3.73)
Gap (1)
Pos 5 N(5.714) D(4.239) Q(2.586) E(0.954) S(0.827) T(0.251) K(0.037) R(-0.00) G(-0.19) H(-0.86) P(-1.64) M(-1.64)
A(-1.86) Y(-1.96) V(-2.86) L(-2.96) C(-3) I(-3) F(-3) W(-3.57)
Gap (1)
Pos 6 R(4.913) K(1.925) T(1.586) Q(0.945) N(0) E(0) H(0) S(-0.57) A(-1) M(-1) P(-1.04) G(-1.04) D(-1.04) L(-2) Y(-2)
C(-2.57) I(-2.86) V(-2.86) F(-2.86) W(-3)
//

===============================
 SLIM 166
===============================
ID           Hemagglutinin.clust.0.2.3
Center             1hge_EC_0
AvSimToCtr 0.545
AvRMSDToCtr 0.965 A
Size         80
NumDistinct 8
FracDDI            0.125
FracPeptides       0
FracIntra    0
Species            INFLUENZA A VIRUS (5), INFLUENZA VIRUS (1)
Conservation       0.833333333333333

Members
      1hgd_AE_0   1hge_AE_0   1hgj_AE_0   1hgd_EC_0   1hgj_EC_0   1hgi_AE_0   1hgi_EC_0   1hgg_AE_0   1hgg_EC_0   1hgh_AE_0
      1hgh_EC_0   1hgd_CA_0   1hge_CA_0   1hgj_CA_0   1hgh_CA_0   1hgi_CA_0   1hgg_CA_0   1hgf_AE_0   1hgf_EC_0   1hgf_CA_0
      4hmg_AE_0   4hmg_EC_0   4hmg_CA_0   2hmg_AE_0   2hmg_EC_0   2hmg_CA_0   3hmg_AE_0   3hmg_EC_0   3hmg_CA_0   3eym_AE_0
      1mql_AG_0   1mqm_AG_0   1mql_GD_0   1mql_DA_0   1mqm_DA_0   1mqm_GD_0   3eym_CA_0   3eym_EC_0   1rd8_AC_0   1rd8_EA_0
      1rd8_CE_0   1ru7_AE_0   1ru7_GK_0   1ru7_CA_0   1ru7_IG_0   1rvx_AE_0   1rvx_GK_0   1rvx_KI_0   1rvz_AE_0   1rvz_KI_0
      1rvz_CA_0   1rvx_CA_0   1rvx_IG_0   1rvx_EC_0   1rvz_EC_0   1rvz_IG_0   1rvz_GK_0   1ru7_EC_0   1ru7_KI_0   1ruy_HL_0
      1ruy_JH_0   1rv0_HL_0   1rv0_JH_0   1rvt_HL_0   1rvt_JH_0   1rv0_LJ_0   1rvt_LJ_0   1ruy_LJ_0   1ruz_HL_0   1ruz_LJ_0
      1ruz_JH_0   2fk0_AC_0   2fk0_IK_0   2fk0_CE_0   2fk0_KG_0   2fk0_EA_0   2fk0_GI_0   2ibx_AC_0   2ibx_CE_0   2ibx_EA_0

Peptides

PartnerDomains
      Hemagglutinin (1hge_EC_0)

Dist Members Intf   Alignment
      1hge_EC_0     D     H       N       I     N       I     G       S       R     P       W     V       R       S
      1rd8_AC_0     D     H                     E       I     A       A       R     P       K     V       R
      1ru7_AE_0                                 E       I     A       E       R     P       K     V       R       N
      1rvz_CA_0     D                           E       I     A       E       R     P       K     V       R       N
      1ruy_HL_0                                 E       I     A       A       R     P       K     V       R       N
      2fk0_AC_0     D     H                     R       I     A       T       R     S             V       R
      2ibx_AC_0     D     H                     R       I             T       R     S             V       R       E
      2ibx_CE_0     D     H                     R       I     A       T       R     S             V       R       E

Dist Members ResidueID Alignment
      1hge_EC_0   101   184   188         214   216     217   218     219     220   221     222   223     229     231
      1rd8_AC_0   101   184                     216     217   218     219     220   221     222   223     229
      1ru7_AE_0                                 216     217   218     219     220   221     222   223     229     231
      1rvz_CA_0   98                            216     217   218     219     220   221     222   223     229     231
      1ruy_HL_0                                 216     217   218     219     220   221     222   223     229     231
      2fk0_AC_0   101   184                     216     217   218     219     220   221           223     229
      2ibx_AC_0   98    184                     216     217           219     220   221           223     229     231
        2ibx_CE_0   98    184               216   217   218   219   220   221       223   229   231

Alignment Occupancy       0.75 0.625 0.125 0.125 1      1     0.875 1     1     1   0.625 1     1     0.75
Gap in betw Columns       82,85 31   0     0     0      0     0     0     0     5   1

SLIM   RegEx        [ERN]I[AG][TAES]R[PS][KW]V
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 21.3805017957786
SLIM   I=181997 Im=3888 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(4.313) R(4.030) N(3.937) Q(1.576) K(1.448) D(1.407) S(-0.02) H(-0.08) T(-0.27) A(-1.08) P(-1.37) G(-1.41)
M(-1.50) Y(-2) L(-2.50) I(-3) V(-3) F(-3) W(-3.08) C(-3.37)
Gap (0)
Pos 1 I(4) L(2) M(1) V(1) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) P(-3) N(-3) D(-3) E(-3) Q(-3) H(-3) R(-3) K(-3) W(-3)
G(-4)
Gap (0)
Pos 2 G(3.935) A(3.715) S(0.771) C(-0.27) T(-0.48) P(-1.22) N(-1.22) E(-1.22) Q(-1.22) R(-1.22) K(-1.22) M(-1.26)
I(-1.27) L(-1.27) V(-1.48) D(-1.91) H(-2.13) F(-2.22) Y(-2.22) W(-2.91)
Gap (0)
Pos 3 E(3.629) T(3.051) A(2.654) S(2.171) D(1.107) Q(0.891) G(0.356) K(0.240) P(0.222) N(0.055) H(-0.34) R(-0.64)
C(-0.82) M(-1.17) I(-1.75) L(-1.75) Y(-2) V(-2.17) F(-2.17) W(-3)
Gap (0)
Pos 4 R(5) K(2) Q(1) N(0) E(0) H(0) S(-1) T(-1) A(-1) M(-1) P(-2) G(-2) D(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 5 P(6.530) S(3.030) T(1) A(0.222) N(0.222) D(-0.50) E(-0.50) Q(-0.50) K(-0.50) G(-0.77) H(-1.50) R(-1.50) M(-
1.50) C(-1.77) V(-2) I(-2.50) L(-2.50) Y(-2.50) F(-2.77) W(-3.50)
Gap (0)
Pos 6 W(8.920) K(4.306) R(1.308) Q(0.319) E(0.311) Y(-0.00) S(-0.68) T(-0.68) N(-0.68) F(-1.00) M(-1.47) H(-1.60)
A(-1.65) P(-1.68) D(-1.68) G(-2.47) L(-2.47) C(-3.17) I(-3.47) V(-3.47)
Gap (0)
Pos 7 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
//

===============================
 SLIM 167
===============================
ID          Histone.clust.0.2.0
Center            1kx5_EA_0
AvSimToCtr 0.461
AvRMSDToCtr 1.280 A
Size        191
NumDistinct 13
FracDDI             1
FracPeptides        0
FracIntra    0
Species             XENOPUS LAEVIS (8), GALLUS GALLUS (3), MUS MUSCULUS (2)
Conservation        0.615384615384615

Members
      1aoi_AE_0   1aoi_EA_0   1eqz_CG_0   1kx3_AE_0   1kx5_AE_0   1s32_AE_0   1kx3_EA_0   1s32_EA_0   1m19_AE_0   1m19_EA_0
      1p3l_EA_0   2nqb_EA_0   1p3l_AE_0   2nqb_AE_0   1m18_AE_0   3c1b_AE_0   1m18_EA_0   1m1a_EA_0   1m1a_AE_0   2nzd_AE_0
      2pyo_AE_0   2nzd_EA_0   2pyo_EA_0   3c1b_EA_0   1kx4_AE_0   1kx4_EA_0   2cv5_AE_0   2cv5_EA_0   1p3b_AE_0   1p3f_AE_0
      1p3m_AE_0   1p3g_AE_0   1p3k_AE_0   1p3p_AE_0   1p3o_AE_0   1p3i_AE_0   1f66_AE_0   1hq3_GC_0   1tzy_CG_0   1tzy_GC_0
      2aro_CG_0   2aro_GC_0   1f66_EA_0   1hq3_CG_0   1eqz_GC_0   1p3b_EA_0   1p3f_EA_0   1p3m_EA_0   1p3g_EA_0   1p3k_EA_0
      1p3o_EA_0   1p3i_EA_0   1p3p_EA_0   1zla_EA_0   2f8n_EA_0   1zla_AE_0   2f8n_AE_0   1u35_AE_0   1u35_EA_0   1p34_AE_0
      1p34_EA_0   1p3a_EA_0   1p3a_AE_0   1aoi_BD_0   1aoi_FH_0   1kx3_FH_0   1p3l_FH_0   1s32_FH_0   3c1b_FH_0   1p3i_FH_0
      2nzd_FH_0   1p3g_FH_0   1p3o_FH_0   1p3p_FH_0   1m18_FH_0   1p34_FH_0   1p3k_FH_0   1p3a_FH_0   1p3m_FH_0   1zla_FH_0
      1p3b_FH_0   1p3f_FH_0   1m1a_FH_0   1f66_BD_0   2cv5_FH_0   1f66_FH_0   2nqb_FH_0   2f8n_FH_0   1eqz_DB_0   1m18_BD_0
      1p3i_BD_0   1p3g_BD_0   1p3o_BD_0   1p34_BD_0   1p3p_BD_0   1p3b_BD_0   1p3a_BD_0   1p3f_BD_0   1p3m_BD_0   1eqz_HF_0
      2pyo_BD_0   2pyo_FH_0   1kx3_BD_0   1kx5_BD_0   1s32_BD_0   1p3l_BD_0   3c1b_BD_0   1zla_BD_0   2nzd_BD_0   1p3k_BD_0
      1kx5_FH_0   1m19_FH_0   1m19_BD_0   2nqb_BD_0   1m1a_BD_0   1kx4_BD_0   1kx4_FH_0   2cv5_BD_0   2f8n_BD_0   1hq3_DB_0
      1tzy_DB_0   2aro_DB_0   1hq3_HF_0   1tzy_HF_0   2aro_HF_0   1u35_BD_0   1u35_FH_0   1aoi_DB_0   1aoi_HF_0   1kx3_HF_0
      1p3l_HF_0   1s32_HF_0   3c1b_HF_0   1p3i_HF_0   1p3g_HF_0   1p3o_HF_0   1p3p_HF_0   1zla_HF_0   1m18_HF_0   1p34_HF_0
      1p3k_HF_0   1p3a_HF_0   1p3b_HF_0   1p3f_HF_0   1p3m_HF_0   1m1a_HF_0   1f66_HF_0   2nqb_HF_0   2cv5_HF_0   2f8n_HF_0
      1eqz_BD_0   1f66_DB_0   2nzd_HF_0   1m18_DB_0   1p3i_DB_0   1p3g_DB_0   1p3o_DB_0   1p34_DB_0   1p3p_DB_0   1p3a_DB_0
      1p3b_DB_0   1p3f_DB_0   1p3m_DB_0   1eqz_FH_0   1kx5_HF_0   1m19_HF_0   1m19_DB_0   2nqb_DB_0   1kx3_DB_0   1s32_DB_0
      1kx5_DB_0   1p3l_DB_0   3c1b_DB_0   1zla_DB_0   1p3k_DB_0   2nzd_DB_0   2pyo_DB_0   2pyo_HF_0   1m1a_DB_0   1kx4_DB_0
      1kx4_HF_0   2cv5_DB_0   1u35_DB_0   2f8n_DB_0   1hq3_BD_0   1tzy_BD_0   2aro_BD_0   1hq3_FH_0   1tzy_FH_0   2aro_FH_0
      1u35_HF_0

Peptides

PartnerDomains
      Histone
(1kx5_EA_0,1p3a_AE_0,1aoi_BD_0,1hq3_DB_0,1tzy_DB_0,1u35_BD_0,1aoi_DB_0,1kx3_HF_0,1s32_HF_0,1p3p_HF_0,1kx5_DB_0,1u35
_DB_0,1hq3_FH_0)

Dist Members Intf   Alignment
      1kx5_EA_0     D     L       C       A     H       A     K       R       K     D       L     A       R       I     R
      1p3a_AE_0     D     L       C       A     H       A             H       K     D       L     A       R       I     R
      1aoi_BD_0     E             L             Y       N             R       R     E       T             R       L     L
      1hq3_DB_0     E     R       L             Y       N                     R     E       T             R       L     L
      1tzy_DB_0     E     R       L             Y       N             R       R     E       T             R       L     L
      1u35_BD_0     E     R       L       A     Y       N                     R     E       T             R       L     L
      1aoi_DB_0     D     T       Y             H       A     K                             Y
      1kx3_HF_0     D     T       Y             H       A     K       R                     Y
        1s32_HF_0   D     T     Y            H      A      K     R                   Y            K      R
        1p3p_HF_0   D     T     Y            H      A      K     R                   Y            K             R
        1kx5_DB_0   D     T     Y            H      A                                Y            R
        1u35_DB_0   D     T     Y            H      A      K     R     M      D
        1hq3_FH_0   D     T     Y            H      A      K     R     M      D      Y

Dist Members ResidueID Alignment
      1kx5_EA_0   106   109   110     111    113    114    115   116   122    123    126    127   129    130    131
      1p3a_AE_0   706   709   710     711    713    714          716   722    723    726    727   729    730    731
      1aoi_BD_0   73          77             80     81           83    89     90     93           96     97     98
      1hq3_DB_0   76    79    80             83     84                 92     93     96           99     100    101
      1tzy_DB_0   76    79    80             83     84           86    92     93     96           99     100    101
      1u35_BD_0   1273 1276 1277      1278   1280   1281               1289   1290   1293         1296   1297   1298
      1aoi_DB_0   68    71    72             75     76     77                        88
      1kx3_HF_0   68    71    72             75     76     77    78                  88
      1s32_HF_0   268   271   272            275    276    277   278                 288          291    292
      1p3p_HF_0   268   271   272            275    276    277   278                 288          291           292
      1kx5_DB_0   68    71    72             75     76                               88           92
      1u35_DB_0   68    71    72             75     76     77    78    84     85
      1hq3_FH_0   68    71    72             75     76     77    78    84     85     88

Alignment Occupancy       1     0.923 1      0.230 1       1     0.538 0.692 0.615 0.615 0.923 0.153 0.692 0.538 0.538
Gap in betw Columns       2     0     2      0     0       0     5     0     2     2,3   0     0

SLIM   RegEx        [DE]..[TRL][YLC]..[HY][AN]K[RH]
SLIM   Coverage           0.846153846153846
SLIM   PSSM Match Cutoff 21.6221446515879
SLIM   I=181997 Im=8598 Id=712 Idm=71
SLIM   PSSM p-value 2.499735277463e-09

PSSM Listing
Pos 0 D(5.640) E(3.927) Q(1.087) T(0.783) N(0.783) K(0.087) S(0) H(-0.57) R(-0.91) P(-1) G(-1.21) A(-1.57) M(-2.57)
Y(-2.57) I(-3) V(-3) F(-3) C(-3.21) L(-3.57) W(-3.57)
Gap (2)
Pos 1 R(3.540) T(3.384) L(2.140) V(1.155) K(0.817) S(0.450) P(0.407) G(0.403) D(0.403) M(0.350) I(0.199) Q(0.171)
N(-0.25) E(-0.25) H(-0.25) A(-1.08) C(-1.32) F(-1.43) Y(-1.82) W(-2.82)
Gap (0)
Pos 2 C(7.128) Y(6.381) L(2.836) F(2.410) V(1.861) W(1.396) H(1.386) M(0.927) I(0.927) A(-1.07) Q(-1.39) S(-1.76)
T(-1.76) R(-2.10) K(-2.10) N(-2.34) E(-2.39) P(-3) G(-3.21) D(-3.21)
Gap (2)
Pos 3 H(7.633) Y(5.836) F(1.861) W(0.861) N(0.654) D(0.640) Q(-0.21) T(-0.30) E(-0.30) R(-0.30) S(-1.21) K(-1.21)
M(-1.57) V(-1.57) I(-1.91) L(-1.91) A(-2) P(-2.21) G(-2.21) C(-2.57)
Gap (0)
Pos 4 N(4.823) A(3.633) S(1) G(0) D(-0.07) C(-0.34) T(-0.57) E(-0.57) Q(-0.57) R(-0.57) K(-0.57) P(-1.21) M(-1.21)
I(-1.30) L(-1.30) H(-1.57) Y(-2) V(-2.21) F(-2.21) W(-3.21)
Gap (0)
Pos 5 K(4.380) R(1.380) E(0.380) Q(0.380) S(-0.61) T(-0.61) N(-0.61) P(-1.61) A(-1.61) D(-1.61) H(-1.61) M(-1.61)
G(-2.61) L(-2.61) Y(-2.61) C(-3.61) I(-3.61) V(-3.61) F(-3.61) W(-3.61)
Gap (0)
Pos 6 H(5.437) R(4.515) K(1.520) Q(0.559) N(-0.19) E(-0.36) Y(-0.42) T(-1.19) D(-1.22) S(-1.36) A(-1.44) M(-1.44)
P(-2.36) G(-2.36) L(-2.44) F(-2.83) V(-3.19) W(-3.19) C(-3.36) I(-3.36)
//

===============================
 SLIM 168
===============================
ID           Histone.clust.0.25.0
Center             1kx5_EA_0
AvSimToCtr 0.549
AvRMSDToCtr 1.035 A
Size         127
NumDistinct 6
FracDDI            1
FracPeptides       0
FracIntra    0
Species            XENOPUS LAEVIS (3), GALLUS GALLUS (2), MUS MUSCULUS (1)
Conservation       0.5

Members
      1aoi_AE_0   1aoi_EA_0   1eqz_CG_0   1kx3_AE_0   1kx5_AE_0   1s32_AE_0   1kx3_EA_0   1s32_EA_0   1m19_AE_0   1m19_EA_0
      1p3l_EA_0   2nqb_EA_0   1p3l_AE_0   2nqb_AE_0   1m18_AE_0   3c1b_AE_0   1m18_EA_0   1m1a_EA_0   1m1a_AE_0   2nzd_AE_0
      2pyo_AE_0   2nzd_EA_0   2pyo_EA_0   3c1b_EA_0   1kx4_AE_0   1kx4_EA_0   2cv5_AE_0   2cv5_EA_0   1p3b_AE_0   1p3f_AE_0
      1p3m_AE_0   1p3g_AE_0   1p3k_AE_0   1p3p_AE_0   1p3o_AE_0   1p3i_AE_0   1f66_AE_0   1hq3_GC_0   1tzy_CG_0   1tzy_GC_0
      2aro_CG_0   2aro_GC_0   1f66_EA_0   1hq3_CG_0   1eqz_GC_0   1p3b_EA_0   1p3f_EA_0   1p3m_EA_0   1p3g_EA_0   1p3k_EA_0
      1p3o_EA_0   1p3i_EA_0   1p3p_EA_0   1zla_EA_0   2f8n_EA_0   1zla_AE_0   2f8n_AE_0   1u35_AE_0   1u35_EA_0   1p34_AE_0
      1p34_EA_0   1p3a_EA_0   1p3a_AE_0   1aoi_BD_0   1aoi_FH_0   1kx3_FH_0   1p3l_FH_0   1s32_FH_0   3c1b_FH_0   1p3i_FH_0
      2nzd_FH_0   1p3g_FH_0   1p3o_FH_0   1p3p_FH_0   1m18_FH_0   1p34_FH_0   1p3k_FH_0   1p3a_FH_0   1p3m_FH_0   1zla_FH_0
      1p3b_FH_0   1p3f_FH_0   1m1a_FH_0   1f66_BD_0   2cv5_FH_0   1f66_FH_0   2nqb_FH_0   2f8n_FH_0   1eqz_DB_0   1m18_BD_0
      1p3i_BD_0   1p3g_BD_0   1p3o_BD_0   1p34_BD_0   1p3p_BD_0   1p3b_BD_0   1p3a_BD_0   1p3f_BD_0   1p3m_BD_0   1eqz_HF_0
      2pyo_BD_0   2pyo_FH_0   1kx3_BD_0   1kx5_BD_0   1s32_BD_0   1p3l_BD_0   3c1b_BD_0   1zla_BD_0   2nzd_BD_0   1p3k_BD_0
      1kx5_FH_0   1m19_FH_0   1m19_BD_0   2nqb_BD_0   1m1a_BD_0   1kx4_BD_0   1kx4_FH_0   2cv5_BD_0   2f8n_BD_0   1hq3_DB_0
      1tzy_DB_0   2aro_DB_0   1hq3_HF_0   1tzy_HF_0   2aro_HF_0   1u35_BD_0   1u35_FH_0

Peptides

PartnerDomains
      Histone (1kx5_EA_0,1p3a_AE_0,1aoi_BD_0,1hq3_DB_0,1tzy_DB_0,1u35_BD_0)

Dist Members Intf Alignment
      1kx5_EA_0   D     L         C       A     H       A     K       R       K     D       L     A       R       I     R
        1p3a_AE_0   D     L     C     A      H      A            H     K      D      L      A     R      I      R
        1aoi_BD_0   E           L            Y      N            R     R      E      T            R      L      L
        1hq3_DB_0   E     R     L            Y      N                  R      E      T            R      L      L
        1tzy_DB_0   E     R     L            Y      N            R     R      E      T            R      L      L
        1u35_BD_0   E     R     L     A      Y      N                  R      E      T            R      L      L

Dist Members ResidueID Alignment
      1kx5_EA_0   106   109   110     111    113    114    115   116   122    123    126    127   129    130    131
      1p3a_AE_0   706   709   710     711    713    714          716   722    723    726    727   729    730    731
      1aoi_BD_0   73          77             80     81           83    89     90     93           96     97     98
      1hq3_DB_0   76    79    80             83     84                 92     93     96           99     100    101
      1tzy_DB_0   76    79    80             83     84           86    92     93     96           99     100    101
      1u35_BD_0   1273 1276 1277      1278   1280   1281               1289   1290   1293         1296   1297   1298

Alignment Occupancy       1     0.833 1      0.5    1      1     0.166 0.666 1       1      1     0.333 1       1      1
Gap in betw Columns       2     0     0      1      0      1     5     0     2       2      0     0

SLIM   RegEx        [ED]..[RL][LC]A.[YH][NA].[RH]
SLIM   Coverage           0.666666666666667
SLIM   PSSM Match Cutoff 20.7410673098357
SLIM   I=181997 Im=6110 Id=712 Idm=32
SLIM   PSSM p-value 0.019830030838349

PSSM Listing
Pos 0 D(4.937) E(4.619) Q(1.660) K(0.660) T(0.452) N(0.452) S(0) H(-0.23) R(-0.33) P(-1) A(-1.23) G(-1.54) M(-2.23)
Y(-2.23) I(-3) V(-3) F(-3) L(-3.23) W(-3.23) C(-3.54)
Gap (2)
Pos 1 R(4.307) L(2.905) V(1.905) K(1.318) M(0.973) I(0.911) Q(0.339) N(-0.66) E(-0.66) H(-0.66) F(-1.02) A(-1.18)
S(-1.47) T(-1.47) Y(-1.65) C(-1.91) P(-2.47) G(-2.60) D(-2.60) W(-2.65)
Gap (0)
Pos 2 C(7.901) L(3.597) V(2.603) M(1.619) I(1.619) F(-0.33) A(-0.54) Y(-1.23) S(-1.54) T(-1.54) W(-2) Q(-2.23) R(-
2.23) K(-2.23) P(-3) N(-3) H(-3) E(-3.23) G(-3.54) D(-3.54)
Gap (0)
Pos 3 A(3.306) S(0.306) C(-0.69) G(-0.69) T(-1.69) P(-1.69) N(-1.69) E(-1.69) Q(-1.69) R(-1.69) K(-1.69) M(-1.69)
I(-1.69) L(-1.69) D(-2.69) H(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
Gap (1)
Pos 4 H(6.906) Y(6.597) F(2.603) W(1.603) N(-0.00) D(-0.06) Q(-0.54) T(-0.85) E(-0.85) R(-0.85) M(-1.23) V(-1.23)
I(-1.33) L(-1.33) S(-1.54) K(-1.54) A(-2) C(-2.23) P(-2.54) G(-2.54)
Gap (0)
Pos 5 N(5.594) A(2.906) S(1) D(0.619) G(0) T(-0.23) E(-0.23) Q(-0.23) R(-0.23) K(-0.23) C(-1.00) H(-1.23) P(-1.54)
M(-1.54) I(-1.85) L(-1.85) Y(-2) V(-2.54) F(-2.54) W(-3.54)
Gap (1)
Pos 6 H(6.209) R(4.309) K(1.323) Q(0.422) Y(0.261) N(-0.04) E(-0.40) D(-0.65) T(-1.04) S(-1.40) A(-1.57) M(-1.57)
P(-2.40) G(-2.40) F(-2.45) L(-2.57) V(-3.04) W(-3.04) C(-3.40) I(-3.40)
//
===============================
 SLIM 169
===============================
ID           Hormone_recep.clust.0.25.2
Center             1gwr_BD_0
AvSimToCtr 0.488
AvRMSDToCtr 0.890 A
Size         259
NumDistinct 62
FracDDI            0.032258064516129
FracPeptides       0.919354838709677
FracIntra    0
Species            HOMO SAPIENS (7), RATTUS NORVEGICUS (1)
Conservation       0.875

Members
      1fm6_AB_0   1fm9_AB_0   1k74_AB_0   1fm6_UV_0   1rdt_AB_0   1mv9_AB_0   2p1t_AB_0   3e94_AB_0   2p1u_AB_0   3fug_AB_0
      2p1v_AB_0   1mvc_AB_0   2zxz_AB_0   2zy0_AB_0   1mzn_AB_0   1mzn_EF_0   1mzn_CD_0   1mzn_GH_0   1uhl_AC_0   2zy0_CD_0
      1xiu_BF_0   1xv9_AE_0   1xvp_AE_0   1xv9_CG_0   1xvp_CG_0   1xls_AI_0   1xls_DL_0   1xls_BJ_0   1xls_CK_0   1xdk_AC_0
      1xdk_EG_0   1m2z_AB_0   3cld_AH_0   3cld_BC_0   1m2z_DE_0   3e7c_AH_0   3e7c_BD_0   1xiu_AE_0   1gwq_AC_0   1gwq_BD_0
      1x7r_AB_0   1l2i_AC_0   3erd_AC_0   1gwr_AC_0   1kv6_AC_0   1tfc_AC_0   1kv6_BD_0   1tfc_BD_0   2gpo_AC_0   2gpp_BD_0
      1pcg_AE_0   1pcg_BF_0   1l2i_BD_0   3erd_BD_0   2fai_BD_0   1x7e_AC_0   1x7e_BD_0   2gpp_AC_0   1xb7_AP_0   3d24_AB_0
      3d24_CD_0   1zky_AC_0   2b1v_AC_0   2b1z_AC_0   2qab_AC_0   2qgw_AC_0   2b23_AC_0   1zky_BD_0   2b1v_BD_0   2b1z_BD_0
      2qab_BD_0   2qgw_BD_0   2qa8_AC_0   2qa8_BD_0   2qgt_BD_0   2b23_BD_0   2fai_AC_0   2g44_AC_0   2g5o_AC_0   2p15_AC_0
      2qzo_AC_0   2qr9_AC_0   2qse_AC_0   2qa6_AC_0   2qxm_AC_0   2g44_BD_0   2qh6_AC_0   2g5o_BD_0   2qgt_AC_0   2qr9_BD_0
      2qse_BD_0   2qxm_BD_0   2p15_BD_0   2qa6_BD_0   2qzo_BD_0   2q6j_BD_0   2q6j_AC_0   2qh6_BD_0   2ocf_AD_0   1u3r_AC_0
      1u3s_AC_0   1x78_AC_0   1x7b_AC_0   1x7j_AC_0   1yy4_AC_0   1u9e_AC_0   1x76_AC_0   1zaf_AC_0   1yye_AC_0   2nv7_AC_0
      1u3r_BD_0   1u3s_BD_0   1zaf_BD_0   1u9e_BD_0   1x76_BD_0   1x7j_BD_0   1yy4_BD_0   1x78_BD_0   1x7b_BD_0   1yye_BD_0
      2nv7_BD_0   2j7x_AB_0   2j7y_AB_0   2a3i_AB_0   2zfx_AC_0   2q3y_AB_0   3bqd_AB_0   1fm6_DE_0   1fm9_DE_0   1k74_DE_0
      1fm6_XY_0   1wm0_XY_1   2prg_BC_1   1zgy_AB_0   3cs8_AB_1   2gtk_AB_1   3g9e_AB_1   2fvj_AB_1   3fur_AH_1   3h0a_DE_1
      2prg_AC_0   1k7l_AB_1   1k7l_CD_1   1k7l_EF_1   2npa_AB_1   2npa_CD_0   2hfp_AB_0   3g8i_AZ_1   3cwd_BD_0   2p54_AB_1
      3et3_AP_1   3et1_AP_0   3et1_BQ_1   3bej_BF_0   1k7l_GH_1   3cwd_AC_1   1p8d_AC_0   1p8d_BD_0   1k4w_AB_0   1n4h_AB_0
      1nq7_AB_0   1osv_AC_0   1ot7_AC_0   1nrl_AC_0   1nrl_BD_0   2o9i_BD_0   2o9i_AC_0   1xdk_BD_0   1xdk_FH_0   1osv_BD_0
      1ot7_BD_0   3fxv_AB_0   1rjk_AC_0   2o4r_AC_0   1rk3_AC_0   2o4j_AC_0   1rkh_AC_0   1rkg_AC_0   2zxn_AC_0   2zl9_AC_0
      2zlc_AC_0   2zla_AC_0   2zmj_AC_0   2zmh_AC_0   2zmi_AC_0   2hbh_AB_0   2hc4_AB_0   2hcd_AB_0   3dr1_AB_0   3dct_AB_0
      3dcu_AB_0   3hc5_AB_0   3bej_AE_0   1xls_EM_0   1xls_HP_0   1xls_FN_0   1xls_GO_0   1uhl_BD_0   1ymt_AB_0   1yp0_AB_0
      3f7d_AB_0   1yuc_AC_0   1yuc_BD_0   1zdu_AP_0   1zh7_AC_0   1zh7_BD_0   2iz2_AB_0   1yok_AB_0   1zdt_BQ_0   1zdt_AP_0
      3gyt_AB_0   3gyu_AB_0   1xv9_BF_0   1xvp_BF_0   1xv9_DH_0   1xvp_DH_0   1t63_AB_0   2ao6_AB_0   2q7j_AB_0   2q7l_AB_0
      2qpy_AB_0   1t7f_AB_0   2z4j_AB_0   1xj7_AB_0   1pzl_AB_0   1yow_AB_0   1g1u_BD_0   1g5y_BD_0   1g1u_CA_0   1g5y_CA_0
      1g1u_AC_0   1g5y_AC_0   1g1u_DB_0   1g5y_DB_0   1t5z_AB_0   1xow_AB_0   2q7i_AB_0   2q7k_AB_0   1t7r_AB_0   1t7m_AB_0
      1kkq_AE_1   1kkq_BF_1   1kkq_DH_1   1kkq_CG_1   2gpv_AG_0   2gpv_CI_0   2gpv_BH_0   2ovh_AB_0   2ovm_AB_0   2gpv_DB_0
      2gpv_EA_0   2jfa_AP_0   2jfa_BQ_0   2jf9_AP_0   2jf9_CR_0   2jf9_BQ_0   1t73_AB_0   1t79_AB_0   1t74_AB_0

Peptides
      1gwr-D   1fm6-B   1fm9-B   1fm6-V   1mv9-B   1mzn-B   1xls-I       1xdk-C   3e7c-D   1xiu-E
      2gpo-C   1pcg-E   2gpp-C   1xb7-P   3d24-B   3d24-D   2qzo-C       2qa6-C   1u3r-C   1u3s-C
      1x7b-C   2j7x-B   2j7y-B   2a3i-B   2q3y-B   1fm6-E   1fm9-E       1zgy-B   3cs8-B   3g8i-Z
      3cwd-D   3fxv-B   3dct-B   1ymt-B   1yp0-B   1yuc-C   1yuc-D       2iz2-B   2ao6-B   1t7f-B
      1xj7-B   1yow-B   1t5z-B   1xow-B   1t7r-B   1t7m-B   1kkq-E       1kkq-F   1kkq-G   2gpv-I
      2gpv-H   2ovm-B   2jfa-P   2jf9-P   1t73-B   1t79-B   1t74-B

PartnerDomains
      SRC-1 (2prg_AC_0)
      fn3 (2ocf_AD_0)

Dist Members Intf   Alignment
      1gwr_BD_0     N     A         L       L       Y       L        L        D
      1fm6_AB_0           I         L       H       L       L
      1fm9_AB_0           I         L       H       L       L        Q
      1fm6_UV_0           I         L       H       L       L        Q        E
      1mv9_AB_0           I         L       H       L       L        Q
      1mzn_AB_0           I         L       H       L       L        Q        D
      1xls_AI_0     A     L         L       R       L       L        D
      1xdk_AC_0     P     M         L       M       L       L        K
      1m2z_AB_0     A     L         L       R       L       L        D
      3e7c_BD_0     A     L         L       R       L       L        D        K
      1xiu_AE_0           I         L       H       L       L        Q        E
      2gpo_AC_0           L         L       L       L       L        K        S
      1pcg_AE_0           I         L       C       L       L        Q
      2gpp_AC_0     S     L         L       L       L       L        K        S
      1xb7_AP_0           E         L       L       Y       L        T        T
      3d24_AB_0                     L       L       Y       L        T        T
      3d24_CD_0             E       L       L       Y       L        T        T
      2qzo_AC_0     K       I       L       H       L       L        Q
      2qa6_AC_0     K       I       L       H       L       L        Q        D
      2ocf_AD_0                     L       R       M       L
      1u3r_AC_0                     L       V       L       L        T        T
      1u3s_AC_0             K       L       V       L       L        T        T
      1x7b_AC_0     H       K       L       V       L       L        T        T
      2j7x_AB_0                     L       I       L       L        A
      2j7y_AB_0                     L       I       L       L        A        D
      2a3i_AB_0     S       L       L       Q       L       L        T        E
      2q3y_AB_0             I       L       Y       L       L
      1fm6_DE_0     K       I       L       H       L       L        Q
      1fm9_DE_0     K       I       L       H       L       L        Q        E
      1zgy_AB_0             I       L       K       I       L        L        E
      3cs8_AB_1     S       L       L       K       L       L        L        A
      2prg_AC_0     H       K       L       V       L       L        T        T
      3g8i_AZ_1     Q       L       L       R       L       L
      3cwd_BD_0   K     I     L     H     L     L     Q     E
      3fxv_AB_0   Q     L     L     R     L     L     D     K
      3dct_AB_0   Q     L     L     R     L     L
      1ymt_AB_0         I     L     Y     L     L     S
      1yp0_AB_0   T     I     L     Y     L     L     S
      1yuc_AC_0   A     I     L     Y     L     L     S
      1yuc_BD_0   A     I     L     Y     L     L     S     S
      2iz2_AB_0   S     T     L     R     L     L     T
      2ao6_AB_0   A     A     L     R     L     L     G     A
      1t7f_AB_0   G     L     L     W     L     L     T
      1xj7_AB_0         K     L     L     L     L     T
      1yow_AB_0   Q     A     L     A           L
      1g1u_BD_0         F     L     M     M     L     E     A
      1t5z_AB_0   E     K     F     K     L     F     Q
      1xow_AB_0   G     A     F     Q     L     F     Q
      1t7r_AB_0   S     R     F     E     L     F     A     G
      1t7m_AB_0   P     R     F     K     Y     F     M     Q
      1kkq_AE_1               I     R     A     L     M
      1kkq_BF_1         I     I     R     A     L     M
      1kkq_CG_1         I     I     R     A     L     M     G
      2gpv_CI_0               I           A     L           G
      2gpv_BH_0               I     R     A     L           G
      2ovm_AB_0         I     I     R     A     L     M     G
      2gpv_DB_0         L     F     L     M     L     E
      2jfa_AP_0               I     L     G     L     Q     D
      2jf9_AP_0         W     F     K     M     L     S
      1t73_AB_0   S     R     F     A     F
      1t79_AB_0   S     K     F     A     L
      1t74_AB_0   S     R     W     Q     L     F

Dist Members ResidueID Alignment
      1gwr_BD_0   742   743   744   745   747   748   749   750
      1fm6_AB_0         632   633   634   636   637
      1fm9_AB_0         632   633   634   636   637   638
      1fm6_UV_0         632   633   634   636   637   638   639
      1mv9_AB_0         474   475   476   478   479   480
      1mzn_AB_0         474   475   476   478   479   480   481
      1xls_AI_0   743   744   745   746   748   749   750
      1xdk_AC_0   643   644   645   646   648   649   650
      1m2z_AB_0   743   744   745   746   748   749   750
      3e7c_BD_0   743   744   745   746   748   749   750   751
      1xiu_AE_0         689   690   691   693   694   695   696
      2gpo_AC_0         379   380   381   383   384   385   386
      1pcg_AE_0         3     4     5     7     8     9
      2gpp_AC_0   378   379   380   381   383   384   385   386
1xb7_AP_0          209    210    211    213    214    215    216
3d24_AB_0                 210    211    213    214    215    216
3d24_CD_0          209    210    211    213    214    215    216
2qzo_AC_0   688    689    690    691    693    694    695
2qa6_AC_0   688    689    690    691    693    694    695    696
2ocf_AD_0                 78     79     81     82
1u3r_AC_0                 606    607    609    610    611    612
1u3s_AC_0          605    606    607    609    610    611    612
1x7b_AC_0   604    605    606    607    609    610    611    612
2j7x_AB_0                 345    346    348    349    350
2j7y_AB_0                 345    346    348    349    350    351
2a3i_AB_0   1433   1434   1435   1436   1438   1439   1440   1441
2q3y_AB_0          20     21     22     24     25
1fm6_DE_0   688    689    690    691    693    694    695
1fm9_DE_0   688    689    690    691    693    694    695    696
1zgy_AB_0          120    121    122    124    125    126    127
3cs8_AB_1   142    143    144    145    147    148    149    150
2prg_AC_0   631    632    633    634    636    637    638    639
3g8i_AZ_1   747    748    749    750    752    753
3cwd_BD_0   688    689    690    691    693    694    695    696
3fxv_AB_0   747    748    749    750    752    753    754    755
3dct_AB_0   747    748    749    750    752    753
1ymt_AB_0          20     21     22     24     25     26
1yp0_AB_0   19     20     21     22     24     25     26
1yuc_AC_0   19     20     21     22     24     25     26
1yuc_BD_0   19     20     21     22     24     25     26     27
2iz2_AB_0   107    108    109    110    112    113    114
2ao6_AB_0   743    744    745    746    748    749    750    751
1t7f_AB_0   99     100    101    102    104    105    106
1xj7_AB_0          922    923    924    926    927    928
1yow_AB_0   599    600    601    602           605
1g1u_BD_0          450    451    452    454    455    456    457
1t5z_AB_0   921    922    923    924    926    927    928
1xow_AB_0   21     22     23     24     26     27     28
1t7r_AB_0   99     100    101    102    104    105    106    107
1t7m_AB_0   99     100    101    102    104    105    106    107
1kkq_AE_1                 689    690    692    693    694
1kkq_BF_1          688    689    690    692    693    694
1kkq_CG_1          688    689    690    692    693    694    695
2gpv_CI_0                 1324          1327   1328          1330
2gpv_BH_0                 1324   1325   1327   1328          1330
2ovm_AB_0          2266   2267   2268   2270   2271   2272   2273
2gpv_DB_0          449    450    451    453    454    455
2jfa_AP_0                 9      10     12     13     14     15
2jf9_AP_0          7      8      9      11     12     13
        1t73_AB_0   99    100   101   102   104
        1t79_AB_0   99    100   101   102   104
        1t74_AB_0   99    100   101   102   104   105

Alignment Occupancy       0.516 0.854 1     0.983 0.983 0.967 0.822 0.516
Gap in betw Columns       0     0     0     1     0     0     0

SLIM   RegEx        [SAKQHPGTNE][ILKAREFWTM][LFIW][RHLKYVAQMIWEC].[LAYMFIG][LF][QTSMDAKLEG][TEDGASKQ]
SLIM   Coverage           0.951612903225806
SLIM   PSSM Match Cutoff 21.9358955841652
SLIM   I=181997 Im=6371 Id=499 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 H(4.568) P(3.571) G(2.590) K(2.518) Q(2.318) S(2.029) N(1.970) A(1.749)   E(1.204) T(0.501) R(-0.06) D(-0.58)
Y(-1.16) M(-1.62) C(-1.81) V(-2.42) L(-2.52) I(-2.68) F(-2.88) W(-3.34)
Gap (0)
Pos 1 W(6.872) I(2.996) K(2.709) L(2.584) R(2.342) F(1.962) E(1.645) M(1.581)   V(1.576) A(1.336) T(0.129) Q(-0.24)
Y(-0.38) S(-0.79) D(-1.02) C(-1.25) N(-1.33) H(-1.63) P(-1.87) G(-1.90)
Gap (0)
Pos 2 W(6.873) F(3.969) L(3.725) V(2.725) I(2.466) M(1.779) Y(1.107) C(-1.09)   A(-1.10) S(-2.01) T(-2.01) Q(-2.16)
R(-2.17) K(-2.17) H(-2.38) E(-3) N(-3.01) P(-3.09) D(-3.65) G(-3.71)
Gap (0)
Pos 3 W(6.873) H(6.272) C(4.874) Y(4.500) R(3.540) K(2.635) L(2.162) Q(2.131)   V(1.890) M(1.851) I(1.458) E(1.231)
A(1.089) F(0.687) N(-0.10) D(-0.31) S(-0.71) T(-0.72) P(-1.87) G(-1.98)
Gap (1)
Pos 4 Y(4.489) L(3.651) M(2.696) V(2.642) F(2.187) G(1.890) I(1.834) A(1.722)   W(-0.26) H(-0.41) S(-0.88) C(-0.92)
Q(-1.48) T(-1.54) R(-1.78) K(-1.78) N(-2.36) E(-2.36) P(-2.45) D(-3.20)
Gap (0)
Pos 5 L(3.881) F(3.509) V(2.881) M(1.892) I(1.892) Y(0.665) W(-1.08) C(-1.08)   A(-1.08) S(-2.03) T(-2.03) Q(-2.08)
R(-2.08) K(-2.08) H(-2.60) N(-3.03) E(-3.03) P(-3.08) G(-3.89) D(-3.89)
Gap (0)
Pos 6 Q(3.535) D(3.299) M(2.540) T(2.350) K(2.106) E(1.995) G(1.972) S(1.693)   L(1.203) A(1.135) R(0.151) V(0.075)
N(-0.09) P(-0.38) I(-0.43) H(-0.63) C(-1.56) F(-1.66) Y(-1.67) W(-2.41)
Gap (0)
Pos 7 D(3.516) G(3.496) E(2.731) T(1.931) K(1.670) Q(1.243) S(1.219) A(1.085)   N(-0.45) R(-0.73) P(-0.82) H(-1.19)
M(-2.06) V(-2.10) C(-2.12) Y(-2.81) L(-2.91) I(-2.94) F(-3.13) W(-3.45)
//

===============================
 SLIM 170
===============================
ID          Hormone_recep.clust.0.3.13
Center            2jfa_BQ_0
AvSimToCtr 0.472
AvRMSDToCtr 0.955   A
Size         15
NumDistinct 6
FracDDI             0.166666666666667
FracPeptides        0.833333333333333
FracIntra    0
Species             HOMO SAPIENS (1)
Conservation        1

Members
      1kkq_AE_1 1kkq_BF_1 1kkq_DH_1 1kkq_CG_1 2gpv_AG_0 2gpv_CI_0 2gpv_BH_0 2ovh_AB_0 2ovm_AB_0 2gpv_DB_0
      2gpv_EA_0 2jfa_AP_0 2jf9_AP_0 2jf9_CR_0 2jf9_BQ_0

Peptides
      2jfa-Q 1kkq-E 2gpv-G 2ovm-B 2jf9-P

PartnerDomains
      Hormone_recep (2gpv_DB_0)

Dist Members Intf   Alignment
      2jfa_BQ_0     L     R     L       I      L      G      L      Q      D
      1kkq_AE_1     L     E     I       I      R      A      L      M      G
      2gpv_AG_0     L     E     I       I      R      A      L             G
      2ovm_AB_0     L     E     I       I      R      A      L      M
      2gpv_DB_0     M     H     L       F      L      M      L      E
      2jf9_AP_0     S     R     W       F      K      M      L      S

Dist Members ResidueID Alignment
      2jfa_BQ_0   5     6     8         9      10     12     13     14     15
      1kkq_AE_1   685   686   688       689    690    692    693    694    695
      2gpv_AG_0   1320 1321 1323        1324   1325   1327   1328          1330
      2ovm_AB_0   2263 2264 2266        2267   2268   2270   2271   2272
      2gpv_DB_0   446   447   449       450    451    453    454    455
      2jf9_AP_0   4     5     7         8      9      11     12     13

Alignment Occupancy       1     1       1      1      1      1      1      0.833 0.5
Gap in betw Columns       0     1       0      0      1      0      0      0

SLIM   RegEx        [LSM][ERH].[ILW][IF][RLK].[AMG]L[MSQE][GD]
SLIM   Coverage           0.833333333333333
SLIM   PSSM Match Cutoff 23.154772896623
SLIM   I=181997 Im=3543 Id=499 Idm=5
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 L(3.628) M(3.391) V(2.597) S(2.224) I(1.686) F(-0.15) A(-0.27) T(-0.50) N(-0.67) Q(-0.85) C(-1) Y(-1.11) K(-
1.14) E(-1.50) R(-1.54) G(-1.67) D(-1.67) W(-1.83) P(-2.14) H(-2.14)
Gap (0)
Pos 1 H(6.209) E(4.313) R(3.914) Q(1.561) D(1.433) K(1.356) Y(0.295) N(0.251) T(-0.23) S(-0.37) A(-1.11) P(-1.37)
M(-1.54) G(-2) F(-2.27) L(-2.54) V(-2.74) W(-2.74) I(-3) C(-3.37)
Gap (1)
Pos 2 W(9.208) I(3.393) L(3.087) V(2.087) M(1.356) Y(0.430) F(0.251) C(-1.11) A(-1.15) S(-2.11) T(-2.11) Q(-2.37)
R(-2.54) K(-2.54) H(-2.74) E(-3) P(-3.11) N(-3.11) G(-3.27) D(-3.37)
Gap (0)
Pos 3 F(4.906) I(3.603) Y(1.937) L(1.660) M(0.763) V(0.660) W(-0.06) C(-1.23) A(-1.23) H(-1.85) S(-2) T(-2) N(-3)
D(-3) E(-3) Q(-3) R(-3) K(-3) P(-3.23) G(-3.54)
Gap (0)
Pos 4 R(4.323) K(3.349) L(2.906) V(1.906) M(0.996) I(0.914) Q(0.619) E(-0.03) N(-0.38) H(-0.54) S(-0.92) T(-0.92)
A(-1) F(-1.00) Y(-1.54) C(-1.85) P(-1.92) D(-2.00) G(-2.33) W(-2.54)
Gap (1)
Pos 5 G(4.215) M(3.905) A(3.317) L(0.974) S(0.499) I(0.089) T(-0.27) C(-0.46) Q(-0.61) F(-0.89) R(-1.11) K(-1.11)
V(-1.27) P(-1.37) N(-1.37) E(-1.37) Y(-1.61) W(-1.77) D(-1.92) H(-2)
Gap (0)
Pos 6 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 7 M(3.906) Q(3.275) E(3.264) S(2.257) L(0.922) D(0.458) K(0.178) I(-0.05) T(-0.09) N(-0.18) R(-0.21) A(-0.35)
H(-0.82) F(-0.98) P(-1.47) Y(-1.47) G(-1.47) C(-1.63) W(-1.82) V(-2.31)
Gap (0)
Pos 8 G(4.901) D(4.210) T(0.306) E(0.244) S(-0.69) N(-0.69) A(-1.03) V(-1.07) Q(-1.55) P(-2.24) H(-2.24) K(-2.24)
R(-2.69) W(-3.03) C(-3.69) M(-3.69) F(-3.69) Y(-3.69) I(-4.24) L(-4.69)
//

===============================
 SLIM 171
===============================
ID           Hydrolase.clust.0.15.5
Center             1swv_BA_0
AvSimToCtr 0.508
AvRMSDToCtr 1.441 A
Size         23
NumDistinct 5
FracDDI            0.6
FracPeptides       0
FracIntra    0
Species            METHANOCALDOCOCCUS JANNASCHII (2), BACILLUS CEREUS (1), METHANOCOCCUS JANNASCHII (1),
ARCHAEOGLOBUS FULGIDUS (1)
Conservation       0.4

Members
        1f5s_AB_1 1l7m_BA_1 1j97_AB_1 1l7n_BA_1 1l7p_BA_1 2b8e_BA_0 1fez_AB_0 1fez_CD_0 1rdf_BD_0 1fez_BA_0
        1fez_DC_0 1rdf_DB_0 1rql_AB_0 1rqn_AB_0 1swv_AB_0 1sww_AB_0 1sww_BA_0 1rql_BA_0 1rqn_BA_0 2iof_AK_0
        2ioh_AB_0 2ioh_BA_0 2iof_KA_0

Peptides

PartnerDomains
      Hydrolase (1swv_BA_0,1l7p_BA_1)
      DUF1104 (1f5s_AB_1,1l7p_BA_1)

Dist Members Intf Alignment
      1swv_BA_0   V     P       Y     P     W     Y     K     A      M     E      G     V     Y     P     M     R     N
      1f5s_AB_1         L       E           Q     R     K            S                                    D
      1j97_AB_1         L             E     Q     R     K            S
      1l7p_BA_1   L             E     Q     R     K                  S
      2b8e_BA_0                 L           D     I     V     L      I            R     D                 A

Dist Members ResidueID Alignment
      1swv_BA_0   156   157   162     163   164   167   168   170    171   172    174   175   176   177   178   195
      196
      1f5s_AB_1         547   550           551   554   555          558                                  633
      1j97_AB_1         547           550   551   554   555          558
      1l7p_BA_1   47          50      51    54    55                 58
      2b8e_BA_0               412           647   648   649   650    651          652   657               661

Alignment Occupancy       0.4   0.6   0.8   0.6   1     1     0.8    0.4   1      0.2   0.4   0.4   0.2   0.2   0.6
      0.2   0.2
Gap in betw Columns       2,4   0     0,2   0,2   0     1,2   6,74

SLIM   RegEx        [LP].{2,4}[ELY][QPE].{0,2}[QWDR].{0,2}[RIKY][KV].{1,2}[SMI]
SLIM   Coverage           0.8
SLIM   PSSM Match Cutoff 28.7369398399638
SLIM   I=181997 Im=4585 Id=309 Idm=3
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 P(5.390) L(3.084) V(2.087) M(1.092) I(1.087) T(-0.51) F(-0.90) A(-1.51) C(-1.85) Y(-1.85) S(-2.05) Q(-2.05)
K(-2.05) N(-2.36) E(-2.36) R(-2.51) D(-2.51) W(-2.85) H(-3.05) G(-3.36)
Gap (2,4)
Pos 1 Y(5.391) E(4.084) L(2.399) F(1.443) V(1.413) Q(1.117) D(1.088) H(0.635) M(0.473) I(0.451) W(0.421) K(0.132)
S(-0.78) T(-0.78) R(-0.78) N(-0.82) A(-1.39) P(-1.78) C(-2.22) G(-2.69)
Gap (0)
Pos 2 P(5.391) E(3.441) Q(3.441) D(0.560) K(0.149) T(-0.05) R(-0.26) S(-0.74) N(-0.74) H(-0.85) M(-1.36) A(-1.51)
Y(-2.20) G(-2.51) V(-2.74) L(-3.05) W(-3.20) I(-3.51) C(-3.74) F(-3.74)
Gap (0,2)
Pos 3 W(9.390) D(4.395) Q(4.096) R(3.427) E(1.535) K(0.974) Y(0.508) N(0.137)   T(0.026) H(-0.35) S(-0.38) F(-0.53)
M(-0.58) A(-1.35) P(-1.38) G(-1.70) L(-2.18) V(-2.47) C(-2.70) I(-3)
Gap (0,2)
Pos 4 Y(5.391) R(4.108) K(3.486) I(2.399) F(1.446) H(0.673) Q(0.539) L(0.490)   W(0.417) E(-0.01) M(-0.17) V(-0.43)
N(-0.45) S(-0.91) T(-0.91) A(-1.13) P(-1.91) D(-1.91) C(-2.03) G(-2.35)
Gap (0)
Pos 5 K(4.489) V(2.393) R(1.491) I(1.397) E(0.505) Q(0.505) M(-0.26) S(-0.46)   T(-0.46) L(-0.47) N(-0.49) A(-0.86)
P(-1.39) D(-1.46) H(-1.46) Y(-1.86) C(-2.26) F(-2.26) G(-2.39) W(-3.22)
Gap (1,2)
Pos 6 S(3.492) M(3.415) I(2.446) L(1.110) A(0.575) T(0.549) N(0.511) Q(-0.21)   K(-0.38) V(-0.42) E(-0.45) D(-0.47)
G(-0.48) F(-0.73) C(-1) R(-1.18) P(-1.35) H(-1.35) Y(-1.47) W(-2.17)
//

===============================
 SLIM 172
===============================
ID           I-set.clust.0.15.4
Center             2f8v_CY_2
AvSimToCtr 0.537
AvRMSDToCtr 0.698 A
Size         11
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (4)
Conservation       1

Members
      1ya5_AT_0 2f8v_AT_0 2f8v_CY_0 1ya5_BT_0 2f8v_BT_0 2f8v_DY_0 1ya5_AT_2 2f8v_AT_2 2f8v_BT_2 2f8v_DY_2
      1ya5_BT_2

Peptides

PartnerDomains
      Telethonin (2f8v_CY_2,1ya5_AT_0,1ya5_BT_0,2f8v_BT_2)

Dist Members Intf Alignment
      2f8v_CY_2   E     E     R       H    E    T     Y      H    Q     Q       G     Q
      1ya5_AT_0                            S    E     V      S    E     E       N
      1ya5_BT_0                            S    S     L      H    E     E       D
      2f8v_BT_2         E     R       R    E    A     F      W    A     E       W     K

Dist Members ResidueID Alignment
      2f8v_CY_2   35    42    47      48   49   50    51     52   53    54      55    56
        1ya5_AT_0                            8     9    10    11    12   13   14
        1ya5_BT_0                            38    39   40    41    42   43   44
        2f8v_BT_2         12     17    18    19    20   21    22    23   24   25   26

Alignment Occupancy       0.25   0.5   0.5   0.5   1    1     1     1    1    1    1     0.5
Gap in betw Columns       4      0     0     0     0    0     0     0    0    0

SLIM   RegEx        E.{4}R[HR][SE][ASTE][FLYV][HSW][EAQ][EQ][WDNG][QK]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 24.5335444362242
SLIM   I=181997 Im=9089 Id=294 Idm=17
SLIM   PSSM p-value 0.0826054158080705

PSSM Listing
Pos 0 E(4.306) D(1.306) Q(1.306) K(0.306) S(-0.69) T(-0.69) N(-0.69) H(-0.69) R(-0.69) P(-1.69) A(-1.69) G(-2.69)
M(-2.69) Y(-2.69) I(-3.69) L(-3.69) V(-3.69) F(-3.69) W(-3.69) C(-4.69)
Gap (4)
Pos 1 R(4.306) K(1.306) Q(0.306) N(-0.69) E(-0.69) H(-0.69) S(-1.69) T(-1.69) A(-1.69) M(-1.69) P(-2.69) G(-2.69)
D(-2.69) L(-2.69) Y(-2.69) C(-3.69) I(-3.69) V(-3.69) F(-3.69) W(-3.69)
Gap (0)
Pos 2 H(6.614) R(3.620) K(0.662) Y(0.631) N(-0.07) Q(-0.07) D(-0.33) E(-0.69) T(-1.07) S(-1.69) A(-2.07) M(-2.07)
F(-2.25) P(-2.69) G(-2.69) L(-3.07) V(-3.07) W(-3.07) C(-3.69) I(-3.69)
Gap (0)
Pos 3 E(4.313) S(3.325) D(1.433) Q(1.433) T(0.620) N(0.620) K(0.620) A(0.433) H(-0.37) R(-0.37) G(-0.56) P(-1) M(-
1.37) C(-1.64) Y(-2) I(-2.37) L(-2.37) V(-2.37) F(-2.37) W(-3)
Gap (0)
Pos 4 E(3.629) S(2.725) T(2.685) A(2.675) D(1.033) Q(0.891) N(0.240) K(0.240) G(0.193) P(-0.04) H(-0.46) R(-0.64)
C(-0.82) M(-1.17) I(-1.75) L(-1.75) Y(-2) V(-2.17) F(-2.17) W(-3)
Gap (0)
Pos 5 Y(5.632) F(4.665) V(2.936) L(2.685) I(1.975) M(1.053) W(0.945) H(0.675) A(-0.89) C(-1.37) Q(-1.75) S(-2) T(-2)
K(-2.17) E(-2.37) R(-2.37) N(-2.64) P(-2.75) G(-3.17) D(-3.17)
Gap (0)
Pos 6 W(9.613) H(7.306) S(2.627) Y(1.718) N(0.714) D(0.478) T(0.175) F(-0.10) Q(-0.24) E(-0.27) A(-0.27) R(-0.50)
K(-0.80) G(-1.04) M(-1.37) P(-1.80) C(-1.89) V(-2.17) L(-2.37) I(-2.64)
Gap (0)
Pos 7 E(4.332) Q(3.710) A(2.633) D(1.380) K(0.756) S(0.357) R(0.240) T(-0.17) N(-0.17) H(-0.24) M(-0.89) P(-1) G(-
1.04) C(-1.30) Y(-1.64) L(-1.89) I(-2.04) V(-2.37) F(-2.64) W(-2.64)
Gap (0)
Pos 8 E(4.728) Q(3.752) D(1.756) K(1) R(0.357) S(0) T(0) N(0) H(0) P(-1) A(-1) M(-1.04) Y(-1.64) G(-2) L(-2.64) V(-
2.64) W(-2.64) I(-3) F(-3) C(-3.64)
Gap (0)
Pos 9 W(9.613) D(4.621) N(4.620) G(4.617) E(0.762) Y(0.645) T(0.483) S(0.175) F(-0.33) Q(-0.56) K(-0.94) A(-1.10)
R(-1.10) V(-1.24) H(-1.37) P(-1.80) M(-1.89) C(-2.64) L(-2.89) I(-3.17)
Gap (0)
Pos 10 Q(3.631) K(3.631) E(0.926) R(0.926) S(-0.69) T(-0.69) N(-0.69) D(-1.07) H(-1.07) M(-1.07) P(-1.69) A(-1.69)
Y(-2.07) G(-2.69) L(-2.69) V(-3.07) W(-3.07) C(-3.69) I(-3.69) F(-3.69)
//

===============================
 SLIM 173
===============================
ID           IL10Ra-bind.clust.0.25.0
Center             1y6k_RL_0
AvSimToCtr 0.580
AvRMSDToCtr 0.689 A
Size         5
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HUMAN CYTOMEGALOVIRUS (2), HOMO SAPIENS (1)
Conservation       0.666666666666667

Members
      1j7v_RL_0 1y6n_RL_0 1y6m_RL_0 1lqs_RL_0 1lqs_SM_0

Peptides

PartnerDomains
      IL10 (1y6k_RL_0,1y6n_RL_0,1lqs_RL_0,1lqs_SM_0)

Dist Members Intf   Alignment
      1y6k_RL_0     P     N     L     R     R     D      K    T    Q    M     D      L     D    N     L     L
      1y6n_RL_0     P     Q     L     R     R     D      K    T    Q    T     D      V     D    N     L     L
      1lqs_RL_0     A     T     L     Q     R     V      K    P    Q                 D     Y    S     V
      1lqs_SM_0     A     T     L     Q     R     V      K    P    Q    R            D     Y    S     V

Dist Members ResidueID Alignment
      1y6k_RL_0   20    21    23      24    27    28     34   35   38   39    41     43    44   45    46    47
      1y6n_RL_0   20    21    23      24    27    28     34   35   38   39    41     43    44   45    46    47
      1lqs_RL_0   20    21    23      24    27    28     34   35   38                43    44   45    46
      1lqs_SM_0   20    21    23      24    27    28     34   35   38   40           43    44   45    46

Alignment Occupancy       1     1     1     1     1      1    1    1    1     0.75   0.5   1    1     1     1
      0.5
Gap in betw Columns       0     1     0     2     0      5    0    2    0     1      1     0    0     0     0

SLIM RegEx          K[TP]..Q[TMR].D.[DLV][DY][SN][LV]L
SLIM Coverage             0.5
SLIM PSSM Match Cutoff 22.745560158658
SLIM I=181997 Im=8163 Id=0 Idm=0
SLIM PSSM p-value 1

PSSM Listing
Pos 0 K(5) R(2) E(1) Q(1) S(0) T(0) N(0) P(-1) A(-1) D(-1) H(-1) M(-1) G(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 1 P(6.309) T(3.355) S(0.433) D(0.433) G(0.355) N(-0.37) E(-0.37) Q(-0.37) K(-0.37) H(-0.56) A(-1) R(-1.37) M(-
1.37) C(-1.56) V(-2) I(-2.37) L(-2.37) Y(-2.37) F(-2.56) W(-3.37)
Gap (2)
Pos 2 Q(5) E(2) R(1) K(1) S(0) T(0) N(0) D(0) H(0) M(0) P(-1) A(-1) Y(-1) G(-2) L(-2) V(-2) W(-2) C(-3) I(-3) F(-3)
Gap (0)
Pos 3 R(3.618) M(3.618) T(2.627) K(0.783) L(0.649) Q(0.165) S(-0.14) P(-0.29) G(-0.32) D(-0.32) I(-0.32) N(-0.62)
E(-0.62) H(-0.62) F(-1.21) A(-1.28) C(-1.62) Y(-1.83) W(-2.14) V(-2.52)
Gap (1)
Pos 4 D(5.306) E(1.306) T(0.306) N(0.306) S(-0.69) Q(-0.69) P(-1.69) G(-1.69) H(-1.69) K(-1.69) A(-2.69) R(-2.69)
C(-3.69) M(-3.69) I(-3.69) V(-3.69) F(-3.69) Y(-3.69) L(-4.69) W(-4.69)
Gap (1)
Pos 5 D(5.306) V(2.928) L(2.662) I(1.930) E(1.319) M(0.936) T(0.355) N(0.325) S(-0.56) Q(-0.56) A(-0.89) F(-1.00)
K(-1.37) P(-1.46) C(-1.56) H(-1.56) Y(-1.56) G(-1.60) R(-2.17) W(-2.89)
Gap (0)
Pos 6 Y(6.306) D(5.306) F(2.309) H(1.355) E(1.325) W(1.309) T(0.355) N(0.355) Q(-0.37) S(-0.56) K(-1.37) P(-1.56)
G(-1.56) M(-1.56) I(-1.56) V(-1.56) L(-1.64) A(-2) R(-2) C(-2.37)
Gap (0)
Pos 7 N(5.313) S(3.355) T(0.620) D(0.620) A(0.355) G(0) E(0) Q(0) K(0) R(-0.37) H(-1) P(-1.37) M(-1.37) C(-1.56)
Y(-2) I(-2.37) L(-2.37) V(-2.37) F(-2.37) W(-3.37)
Gap (0)
Pos 8 V(3.620) L(3.355) I(2.620) M(1.620) A(-0.37) F(-0.37) C(-1) Y(-1) S(-2) T(-2) Q(-2) K(-2) P(-2.37) E(-2.37)
R(-2.37) W(-2.37) N(-3) H(-3) G(-3.37) D(-3.37)
Gap (0)
Pos 9 L(3.306) V(2.306) M(1.306) I(1.306) F(-0.69) C(-1.69) A(-1.69) Y(-1.69) S(-2.69) T(-2.69) Q(-2.69) R(-2.69)
K(-2.69) W(-2.69) P(-3.69) N(-3.69) E(-3.69) H(-3.69) G(-4.69) D(-4.69)
//

===============================
 SLIM 174
===============================
ID          IL8.clust.0.15.3
Center            1f9r_AD_0
AvSimToCtr 0.432
AvRMSDToCtr 1.279 A
Size        15
NumDistinct 7
FracDDI           1
FracPeptides        0
FracIntra    0
Species             HOMO SAPIENS (4)
Conservation        1

Members
      1f9q_AD_0 1f9s_AD_0 1f9q_DA_0 1f9r_DA_0 1f9s_DA_0 1plf_BD_0 1plf_DB_0 1rhp_BD_0 1rhp_DB_0 1o7y_AC_0
      1o7y_CA_0 1nap_BD_0 1tvx_BD_0 1tvx_DB_0 1nap_DB_0

Peptides

PartnerDomains
      IL8 (1f9r_AD_0,1plf_BD_0,1o7y_AC_0,1o7y_CA_0,1nap_BD_0,1tvx_DB_0,1nap_DB_0)

Dist Members Intf   Alignment
      1f9r_AD_0     G     D     L      Q     C     L     C     V     K     T     T     I     K     I     C
      1plf_BD_0           D     L      Q     C     V     C     L     K     T     T     I     K     I     C
      1o7y_AC_0                 V      R     C     T     C     I     S     I           I     K     R     C
      1o7y_CA_0     R     T     V      R
      1nap_BD_0     A     E     L                  L     C     K     T     T           I     K     I     C
      1tvx_DB_0           E     L                  L     C           K     T     T     I     K     I     C
      1nap_DB_0           A                        L     C           K     T     T     I     K     I     C

Dist Members ResidueID Alignment
      1f9r_AD_0   306   307   308      309   310   311   312   313   314   315   316   342   350   351   352
      1plf_BD_0         22    23       24    25    26    27    28    29    30    31    57    65    66    67
      1o7y_AC_0               7        8     9     10    11    12    13    14          42    51    52    53
      1o7y_CA_0   5     6     7        8
      1nap_BD_0   21    22    23                   26    27    29    30    31          57    65    66    67
      1tvx_DB_0         22    23                   26    27          29    30    31    57    65    66    67
      1nap_DB_0         21                         26    27          29    30    31    57    65    66    67

Alignment Occupancy       0.428 0.857 0.857 0.571 0.428 0.857 0.857 0.571 0.857 0.857 0.571 0.857 0.857 0.857 0.857
Gap in betw Columns       0     0     1     0     0,1   0     0     0     25    7,8   0     0

SLIM   RegEx        [DEAT][LV][QR].[LTV]C.{0,1}[KILV][KST][TI]T
SLIM   Coverage           0.857142857142857
SLIM   PSSM Match Cutoff 21.0507023198586
SLIM   I=181997 Im=6538 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 D(4.768) E(3.800) T(2.187) A(2.078) Q(0.952) S(0.298) N(0.229) K(0.074) G(-0.39) P(-0.42) H(-0.59) R(-0.84)
C(-1.53) M(-1.84) I(-2.29) Y(-2.39) L(-2.39) V(-2.70) F(-2.70) W(-3.39)
Gap (0)
Pos 1 L(3.464) V(3.298) I(2.298) M(1.609) F(-0.39) A(-0.70) C(-1.15) Y(-1.15)               S(-2.15) T(-2.15) Q(-2.15) K(-2.15)
R(-2.39) W(-2.39) P(-2.70) E(-2.70) N(-3.15) H(-3.15) G(-3.70) D(-3.70)
Gap (0)
Pos 2 Q(3.765) R(3.765) K(1.060) E(0.874) N(-0.55) H(-0.55) S(-0.93) T(-0.93)               M(-0.93) D(-1.12) A(-1.55) P(-1.93)
Y(-1.93) G(-2.55) L(-2.55) V(-2.93) W(-2.93) C(-3.55) I(-3.55) F(-3.55)
Gap (1)
Pos 3 L(3.453) V(2.959) T(2.066) I(1.961) M(1.539) F(-0.44) S(-0.72) P(-0.82)               G(-0.90) D(-0.90) A(-0.90) C(-1.15)
Y(-1.26) Q(-1.42) K(-1.42) E(-1.65) N(-1.72) H(-1.72) R(-1.98) W(-2.39)
Gap (0)
Pos 4 C(8.845) A(-0.15) S(-1.15) T(-1.15) M(-1.15) I(-1.15) L(-1.15) V(-1.15)               F(-2.15) Y(-2.15) W(-2.15) P(-3.15)
G(-3.15) N(-3.15) D(-3.15) Q(-3.15) H(-3.15) R(-3.15) K(-3.15) E(-4.15)
Gap (0,1)
Pos 5 K(3.056) I(2.462) V(2.403) L(2.226) M(0.633) R(0.085) Q(-0.83) E(-0.86)               F(-1.06) A(-1.20) S(-1.60) T(-1.60)
Y(-1.73) C(-1.80) N(-1.80) P(-2.45) H(-2.60) D(-2.66) W(-3.20) G(-3.45)
Gap (0)
Pos 6 K(4.443) S(2.170) T(2.170) R(1.464) E(0.609) Q(0.609) N(0.097) D(-0.29)               P(-0.42) A(-0.42) G(-0.49) H(-0.90)
M(-1.15) C(-2.01) L(-2.15) Y(-2.15) I(-2.70) V(-2.70) F(-2.70) W(-3.15)
Gap (0)
Pos 7 T(3.664) I(2.066) S(0.673) P(0.667) D(0.667) G(0.664) L(0.141) N(-0.32)               E(-0.32) Q(-0.32) H(-0.32) K(-0.32)
M(-0.42) V(-0.72) C(-1.15) A(-1.15) R(-1.30) F(-1.42) Y(-1.90) W(-3.15)
Gap (0)
Pos 8 T(3.440) S(0.440) P(0.440) G(0.440) D(0.440) N(-0.55) E(-0.55) Q(-0.55)               H(-0.55) K(-0.55) C(-1.55) A(-1.55)
R(-1.55) M(-1.55) I(-2.55) L(-2.55) V(-2.55) F(-2.55) Y(-2.55) W(-3.55)
//

===============================
 SLIM 175
===============================
ID           IL8.clust.0.2.1
Center             1u4m_BA_0
AvSimToCtr 0.368
AvRMSDToCtr 1.411 A
Size         61
NumDistinct 20
FracDDI            0.8
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (14), HUMAN HERPESVIRUS 8 (3), MURID HERPESVIRUS 4 (1)
Conservation       0.777777777777778

Members
      1b3a_AB_0   1eqt_AB_0   1u4l_AB_0   1u4m_AB_0   1u4p_AB_0   1u4p_BA_0   1b3a_BA_0   1eqt_BA_0   1u4l_BA_0   2vxw_AB_0
      2vxw_BA_0   2q8r_EH_0   2q8r_GF_0   2q8r_FG_0   2q8r_HE_0   2q8t_AB_0   2q8t_DC_0   2q8t_BA_0   2q8t_CD_0   2ra4_AB_0
      2ra4_BA_0   1u4r_AB_0   1u4r_CD_0   1u4r_BA_0   1u4r_DC_0   1cm9_AB_0   1cm9_BA_0   2fj2_AB_0   2fj2_CD_0   2fj2_BA_0
      2fj2_DC_0   1ml0_DA_0   2nz1_DA_0   2nz1_YX_0   2nz1_EB_0   2nyz_DA_0   2nyz_EB_0   1hrj_AB_0   1hrj_BA_0   1dok_AB_0
      1dok_BA_0 1zxt_AB_0 1zxt_BA_0 1zxt_CD_0 1zxt_DC_0 1hum_AB_0 1hum_BA_0 1hun_AB_0 1hun_BA_0 1b50_AB_0
      1b50_BA_0 1b53_AB_0 1b53_BA_0 1rtn_AB_0 1rtn_BA_0 1rto_AB_0 1rto_BA_0 1dom_AB_0 1dom_BA_0 1don_AB_0
      1don_BA_0

Peptides

PartnerDomains
      IL8
(1u4m_BA_0,2q8r_EH_0,2q8t_CD_0,2ra4_AB_0,1cm9_AB_0,1hrj_AB_0,1zxt_AB_0,1zxt_BA_0,1hum_AB_0,1hun_AB_0,1b50_AB_0,1b50
_BA_0,1b53_AB_0,1b53_BA_0,1dom_AB_0,1don_AB_0)

Dist Members Intf   Alignment
      1u4m_BA_0     Y     S     S   D     T     T     P     C     C     F     A     Y     I     K     C     S     V
      Q     V       C
      2vxw_AB_0           S     S   Q     S     S     A     C     C     F     A           I     K     C           V
            V       C
      2vxw_BA_0                 S   Q     S     S     A     C     C     F     A     Y     I     K     C           V
            V       C
      2q8r_EH_0                 Y   H     P     S     E     C     C     F     T     Y     T     Q     C           V
      S     V       C
      2q8t_CD_0           P     Y   H     P     S     E     C     C     F     T     Y     T     Q     C           V
      S     V       C
      2ra4_AB_0                     V     P     S     T     C     C     F     T     F     S     R     C     P     I
      E     I       C
      1cm9_AB_0                 H   R     P     D     K     C     C     L     G     Y     Q     L     C     S     I
      Q     V       C
      1ml0_DA_0           S     V   S     P     L     P     A                                   P
      1hrj_AB_0           Y     S   D     T     T     P     C     C     F     A     Y     I     K     C     S     V
      Q     V       C
      1dok_AB_0                 N   A     P     V     T     C     C     Y     N     F     T     K     C     P     I
      E     I       C
      1zxt_AB_0                 Y   T     P     N     S     C     C     Y           F     Q                       I
            I       C
      1zxt_BA_0                 Y   T     P     N     S     C     C     Y     G     F     Q     A     C     P     I
      Q     I       C
      1hum_AB_0                 D   P     P     T     A     C     C     F     S     Y     T                       V
      Q     V       C
      1hun_AB_0                 D   P     P     T     A     C     C     F     S     Y     T           C           V
      Q     V       C
      1b50_AB_0                           P     T     A     C     C     F                       Q     C           I
      Q     V       C
      1b50_BA_0                           P     T     A     C     C     F                 T     Q     C
      Q     V       C
      1b53_AB_0                     T     P     T     A     C     C     F     S     Y     T     S                 I
      Q     V       C
      1b53_BA_0               A     T     P     T     A     C     C    F    S    Y    T    S               I
      Q     V     C
      1dom_AB_0         I     N     A     P     V     T     C     C              F    T
                  C
      1don_AB_0         I     N     A     P     V     T     C     C    Y    N    F    T
                  C

Dist Members ResidueID Alignment
      1u4m_BA_0   3     4     5     6     7     8     9     10    11   12   13   14   15   33    34   35
      40    48    49    50
      2vxw_AB_0         4     5     6     7     8     9     10    11   12   13        15   33    34
      40          49    50
      2vxw_BA_0               5     6     7     8     9     10    11   12   13   14   15   33    34
      40          49    50
      2q8r_EH_0               3     4     5     6     7     8     9    10   11   12   13   31    32
      38    46    47    48
      2q8t_CD_0         10    11    12    13    14    15    16    17   18   19   20   21   39    40
      46    54    55    56
      2ra4_AB_0                     7     8     9     10    11    12   13   14   15   16   34    35   36
      41    49    50    51
      1cm9_AB_0               9     10    11    12    13    14    15   16   17   18   19   37    38   39
      44    52    53    54
      1ml0_DA_0         269   270   271   272   273   274   275                            356
      1hrj_AB_0         3     5     6     7     8     9     10    11   12   13   14   15   33    34   35
      40    48    49    50
      1dok_AB_0               6     7     8     9     10    11    12   13   14   15   16   35    36   37
      42    50    51    52
      1zxt_AB_0               7     8     9     10    11    12    13   14        16   17
      42          51    52
      1zxt_BA_0               7     8     9     10    11    12    13   14   15   16   17   35    36   37
      42    50    51    52
      1hum_AB_0               6     7     8     9     10    11    12   13   14   15   16
      41    49    50    51
      1hun_AB_0               6     7     8     9     10    11    12   13   14   15   16         35
      41    49    50    51
      1b50_AB_0                           7     8     9     10    11   12                  33    34
      40    48    49    50
      1b50_BA_0                           7     8     9     10    11   12             15   33    34
      48    49    50
      1b53_AB_0                     6     7     8     9     10    11   12   13   14   15   32
      40    48    49    50
      1b53_BA_0               4     6     7     8     9     10    11   12   13   14   15   32
      40    48    49    50
      1dom_AB_0         5     6     7     8     9     10    11    12             15   16
                  52
        1don_AB_0         5      6      7     8     9   10    11    12    13     14    15     16
                    52

Alignment Occupancy       0.05   0.35   0.8   0.9   1   1     1     1     0.95   0.9   0.75   0.8   0.9   0.75   0.65
      0.3   0.8   0.7     0.85   0.95
Gap in betw Columns       0,1    0      0     0     0   0     0     0     0      0     16,18 0      5     7      0      0

SLIM   RegEx        [SYNDAHV].{0,1}[TAPHQDSVR][PST][TSVNDL][ATPSEK][CA]C[FYL][SATNG][YF][TIQS]
SLIM   Coverage           0.6
SLIM   PSSM Match Cutoff 28.8011085253954
SLIM   I=181997 Im=4210 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Y(5.392) H(5.015) N(4.119) D(3.716) S(2.452) F(1.411) A(1.221) V(1.049)    W(0.408) E(0.174) I(0.129) T(0.065)
Q(-0.51) K(-0.78) G(-0.78) R(-1.09) M(-1.09) L(-1.32) C(-1.69) P(-1.75)
Gap (0,1)
Pos 1 H(5.698) P(4.703) D(3.722) Q(2.742) T(2.474) A(2.148) R(2.075) S(1.381)    V(1.041) E(0.681) N(0.116) I(0.109)
K(0.061) Y(-0.14) G(-0.18) M(-0.83) C(-1.26) L(-1.35) F(-2.09) W(-2.88)
Gap (0)
Pos 2 P(6.777) T(2.067) S(1.796) N(-0.40) D(-0.40) A(-0.50) E(-0.70) Q(-0.70)    K(-0.70) G(-0.73) H(-1.40) R(-1.70)
M(-1.70) V(-2) C(-2.17) I(-2.70) L(-2.70) Y(-2.70) F(-3.17) W(-3.70)
Gap (0)
Pos 3 N(3.727) T(3.125) D(3.081) S(2.713) V(2.228) I(1.246) L(1.172) G(0.381)    P(0.210) E(0.132) M(0.031) A(0.015)
Q(-0.18) K(-0.22) H(-0.58) R(-1.02) C(-1.13) F(-1.60) Y(-1.72) W(-3.00)
Gap (0)
Pos 4 P(5.107) A(3.104) E(2.739) T(2.476) K(2.103) S(1.987) D(0.412) Q(0.320)    G(0.080) N(-0.19) R(-0.29) C(-0.64)
H(-0.84) M(-1.17) L(-1.57) I(-1.59) V(-2.09) Y(-2.09) F(-2.25) W(-3.09)
Gap (0)
Pos 5 C(8.948) A(1.302) S(-0.72) T(-1) M(-1) I(-1) L(-1) V(-1.03) F(-2) Y(-2)    W(-2.03) G(-2.32) P(-2.72) N(-2.72)
Q(-2.72) R(-2.72) K(-2.72) D(-2.91) H(-2.91) E(-3.32)
Gap (0)
Pos 6 C(8.948) A(-0.05) S(-1.05) T(-1.05) M(-1.05) I(-1.05) L(-1.05) V(-1.05)    F(-2.05) Y(-2.05) W(-2.05) P(-3.05)
G(-3.05) N(-3.05) D(-3.05) Q(-3.05) H(-3.05) R(-3.05) K(-3.05) E(-4.05)
Gap (0)
Pos 7 F(5.584) Y(5.448) L(1.239) W(1.179) H(0.541) V(0.275) M(0.088) I(0.088)    C(-2.01) A(-2.01) S(-2.10) T(-2.10)
Q(-2.18) R(-2.71) K(-2.71) N(-2.78) E(-2.78) G(-3.14) D(-3.14) P(-3.71)
Gap (0)
Pos 8 G(3.719) N(3.716) S(2.504) A(2.453) T(2.216) D(-0.05) P(-0.54) E(-0.62)    Q(-0.62) K(-0.62) C(-1.08) R(-1.15)
H(-1.20) M(-1.51) V(-1.71) I(-2.05) L(-2.05) Y(-2.37) F(-2.47) W(-3.15)
Gap (0)
Pos 9 Y(6.317) F(4.875) W(1.506) H(1.336) M(-0.72) I(-0.72) L(-0.72) V(-1.22)    Q(-1.61) C(-2.22) S(-2.22) T(-2.22)
A(-2.22) N(-2.49) E(-2.49) R(-2.49) K(-2.49) G(-3.22) D(-3.22) P(-3.49)
Gap (0)
Pos 10 T(3.318) Q(3.127) I(2.398) S(1.450) E(0.511) L(0.452) D(0.450) P(0.366) G(0.359) K(-0.03) M(-0.10) N(-0.22)
H(-0.38) V(-0.44) R(-0.47) A(-0.80) C(-1.26) F(-1.26) Y(-1.59) W(-2.85)
//

===============================
 SLIM 176
===============================
ID           IL8.clust.0.2.4
Center             1f9r_AD_0
AvSimToCtr 0.517
AvRMSDToCtr 0.784 A
Size         11
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (1)
Conservation       1

Members
      1f9q_AD_0 1f9s_AD_0 1f9q_DA_0 1f9r_DA_0 1f9s_DA_0 1plf_BD_0 1plf_DB_0 1rhp_BD_0 1rhp_DB_0 1o7y_AC_0
      1o7y_CA_0

Peptides

PartnerDomains
      IL8 (1f9r_AD_0,1plf_BD_0,1o7y_AC_0,1o7y_CA_0)

Dist Members Intf Alignment
      1f9r_AD_0   G     D     L       Q     C     L      C      V      K      T      T      I     K      I      C
      1plf_BD_0         D     L       Q     C     V      C      L      K      T      T      I     K      I      C
      1o7y_AC_0               V       R     C     T      C      I      S      I             I     K      R      C
      1o7y_CA_0   R     T     V       R

Dist Members ResidueID Alignment
      1f9r_AD_0   306   307   308     309   310   311    312    313    314    315    316    342   350    351    352
      1plf_BD_0         22    23      24    25    26     27     28     29     30     31     57    65     66     67
      1o7y_AC_0               7       8     9     10     11     12     13     14            42    51     52     53
      1o7y_CA_0   5     6     7       8

Alignment Occupancy     0.5   0.75    1     1     0.75   0.75   0.75   0.75   0.75   0.75   0.5   0.75   0.75   0.75   0.75
Gap in betw Columns     0     0       0     0     0      0      0      0      0      0      25    7,8    0      0

SLIM RegEx        [RG][DT][LV][QR]C[TLV]C[ILV][KS][TI]T
SLIM Coverage           1
SLIM PSSM Match Cutoff 19.4539031373384
SLIM I=181997 Im=5568 Id=0 Idm=0
SLIM PSSM p-value 1

PSSM Listing
Pos 0 G(4.614) R(3.614) K(0.631) T(-0.25) Q(-0.33) S(-1.07) A(-1.07) N(-1.25) E(-1.25) H(-1.25) V(-1.33) D(-2.07)
M(-2.25) P(-2.69) Y(-3.07) W(-3.07) L(-3.25) C(-3.69) F(-3.69) I(-4.07)
Gap (0)
Pos 1 D(5.310) T(2.708) E(1.372) N(0.475) S(0.165) P(-0.14) G(-0.14) Q(-0.28) H(-0.83) K(-0.83) A(-1.83) R(-1.83)
C(-2.14) M(-2.14) I(-2.83) V(-2.83) F(-2.83) Y(-2.83) L(-3.14) W(-3.83)
Gap (0)
Pos 2 V(3.620) L(3.355) I(2.620) M(1.620) A(-0.37) F(-0.37) C(-1) Y(-1) S(-2) T(-2) Q(-2) K(-2) P(-2.37) E(-2.37)
R(-2.37) W(-2.37) N(-3) H(-3) G(-3.37) D(-3.37)
Gap (0)
Pos 3 Q(4.325) R(4.325) K(1.620) E(1.433) N(0) H(0) S(-0.37) T(-0.37) M(-0.37) D(-0.56) A(-1) P(-1.37) Y(-1.37) G(-
2) L(-2) V(-2.37) W(-2.37) C(-3) I(-3) F(-3)
Gap (0)
Pos 4 C(8.712) A(-0.28) S(-1.28) T(-1.28) M(-1.28) I(-1.28) L(-1.28) V(-1.28) F(-2.28) Y(-2.28) W(-2.28) P(-3.28)
G(-3.28) N(-3.28) D(-3.28) Q(-3.28) H(-3.28) R(-3.28) K(-3.28) E(-4.28)
Gap (0)
Pos 5 V(2.928) L(2.664) T(2.618) I(1.931) M(0.962) S(-0.29) P(-0.32) G(-0.36) D(-0.36) A(-0.83) F(-0.97) Q(-1.14)
K(-1.14) E(-1.21) C(-1.28) N(-1.29) H(-1.29) Y(-1.52) R(-1.97) W(-2.83)
Gap (0)
Pos 6 C(8.712) A(-0.28) S(-1.28) T(-1.28) M(-1.28) I(-1.28) L(-1.28) V(-1.28) F(-2.28) Y(-2.28) W(-2.28) P(-3.28)
G(-3.28) N(-3.28) D(-3.28) Q(-3.28) H(-3.28) R(-3.28) K(-3.28) E(-4.28)
Gap (0)
Pos 7 I(3.021) V(2.962) L(2.783) M(1.165) F(-0.52) A(-0.83) C(-1.28) Y(-1.28) S(-2.28) T(-2.28) Q(-2.52) K(-2.52)
P(-2.83) E(-2.83) R(-2.83) W(-2.83) N(-3.28) H(-3.28) D(-3.52) G(-3.83)
Gap (0)
Pos 8 K(4.310) S(2.649) R(1.331) E(0.475) Q(0.475) T(0.165) N(0.165) A(-0.14) D(-0.83) G(-1.14) P(-1.28) H(-1.28)
M(-1.28) C(-2.14) L(-2.28) Y(-2.28) I(-2.83) V(-2.83) F(-2.83) W(-3.28)
Gap (0)
Pos 9 T(3.308) I(2.618) L(0.649) S(0.331) P(0.315) D(0.315) G(0.310) M(-0.14) V(-0.29) N(-0.66) E(-0.66) Q(-0.66)
H(-0.66) K(-0.66) F(-1.14) C(-1.28) A(-1.28) R(-1.62) Y(-1.83) W(-3.28)
Gap (0)
Pos 10 T(3.306) S(0.306) P(0.306) G(0.306) D(0.306) N(-0.69) E(-0.69) Q(-0.69) H(-0.69) K(-0.69) C(-1.69) A(-1.69)
R(-1.69) M(-1.69) I(-2.69) L(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
//

===============================
 SLIM 177
===============================
ID          IL8.clust.0.25.0
Center            1f9s_DC_0
AvSimToCtr 0.371
AvRMSDToCtr 1.170   A
Size         67
NumDistinct 16
FracDDI             1
FracPeptides        0
FracIntra    0
Species             HOMO SAPIENS (9), MUS MUSCULUS (2)
Conservation        0.818181818181818

Members
      1f9q_AB_0   1f9q_BA_0   1f9r_AB_0   1f9r_BA_0   1f9q_DC_0   1f9s_AB_0   1f9r_DC_0   1f9s_BA_0   1f9q_CD_0   1f9s_CD_0
      1f9r_CD_0   1rhp_CD_0   1plf_AB_0   1plf_BA_0   1plf_CD_0   1plf_DC_0   1rhp_DC_0   1rhp_BA_0   1rhp_AB_0   1pfm_AB_0
      1pfm_BA_0   1pfm_CD_0   1pfm_DC_0   1pfn_AB_0   1pfn_CD_0   1pfn_DC_0   1pfn_BA_0   1nap_AB_0   1nap_CD_0   1tvx_AB_0
      1tvx_CD_0   1nap_BA_0   1nap_DC_0   1tvx_BA_0   1tvx_DC_0   1o7y_AB_0   1o7y_DC_0   1o7y_BA_0   1o7y_CD_0   1o7z_AB_0
      1o80_AB_0   1o7z_BA_0   1o80_BA_0   1qnk_AB_0   1qnk_BA_0   2r3z_AD_0   2r3z_BC_0   2r3z_CB_0   2r3z_DA_0   1icw_AB_0
      1qe6_AB_0   1qe6_BA_0   1qe6_CD_0   1qe6_DC_0   1icw_BA_0   1il8_AB_0   1il8_BA_0   1ilp_BA_0   1ilq_BA_0   1ilp_AB_0
      1ilq_AB_0   2il8_AB_0   2il8_BA_0   1mgs_AB_0   1mgs_BA_0   1mi2_AB_0   1mi2_BA_0

Peptides

PartnerDomains
      IL8
(1f9s_DC_0,1f9r_AB_0,1plf_AB_0,1nap_AB_0,1nap_CD_0,1nap_BA_0,1nap_DC_0,1o7y_AB_0,1o7z_AB_0,1o80_AB_0,1o80_BA_0,1qnk
_AB_0,2r3z_AD_0,1icw_AB_0,1mgs_AB_0,1mi2_AB_0)

Dist Members Intf   Alignment
      1f9s_DC_0     I     T       S       L     E       V     I       K       A     A       I     K       L       L     S
      1f9r_AB_0     I     T       S       L     E       V     I       K       A     P       I     K       L       L     S
      1plf_AB_0           S       S       L     E       V     I               A     P       I             L       L
      1nap_AB_0           Q       S       L     E       V     I                     V
      1nap_CD_0           Q       S       L     E       V     I       G       K     V
      1nap_BA_0           Q       S       L     E       V     I                             V             K
      1nap_DC_0           Q       S       L     E       V     I       G             V       V             K
      1o7y_AB_0     L     E       K       L     E       I     I       P             V       L             V       S
      1o7z_AB_0     L     E       K       L     E       I     I       P       A     V
      1o80_AB_0     L     E       K       L     E       I     I       P                     L             V       S     E
      1o80_BA_0     L     E       K       L     E       I     I       P             V       V                     M
      1qnk_AB_0           Q       S       V     K       V     K       S       P     T
      2r3z_AD_0     I     G       K       L     E       I     I
      1icw_AB_0     I     K       E       L     R       V     I       E       S             L     R       A       E     S
      1mgs_AB_0           Q       S       V     N       V     K       S       P     T
      1mi2_AB_0     I     Q       S       L     S       V     T       P       P     T

Dist Members ResidueID Alignment
      1f9s_DC_0   224   225   226         227   228     229   230     231     232   239     264   266     267     268   270
        1f9r_AB_0   124   125   126   127   128   129   130   131   132    139   164   166   167   168   170
        1plf_AB_0         40    41    42    43    44    45          47     54    79          82    83
        1nap_AB_0         40    41    42    43    44    45                 54
        1nap_CD_0         40    41    42    43    44    45    46    47     54
        1nap_BA_0         40    41    42    43    44    45                       79          82
        1nap_DC_0         40    41    42    43    44    45    46           54    79          82
        1o7y_AB_0   24    25    26    27    28    29    30    31           39    65          68    69
        1o7z_AB_0   24    25    26    27    28    29    30    31    32     39
        1o80_AB_0   24    25    26    27    28    29    30    31                 65          68    69    71
        1o80_BA_0   24    25    26    27    28    29    30    31           39    68                72
        1qnk_AB_0         24    25    26    27    28    29    30    31     38
        2r3z_AD_0   24    25    26    27    28    29    30
        1icw_AB_0   22    23    24    25    26    27    28    29    30           66    68    69    70    72
        1mgs_AB_0         24    25    26    27    28    29    30    31     38
        1mi2_AB_0   23    24    25    26    27    28    29    30    31     38

Alignment Occupancy       0.562 1     1     1     1     1     1     0.75   0.562 0.75 0.562 0.187 0.5    0.437 0.25
Gap in betw Columns       0     0     0     0     0     0     0     0      6     24,28 2

SLIM   RegEx        [IL][QETSKG][SKE][LV][ESNRK][VI][IKT][PSKGE][APSK]
SLIM   Coverage           0.625
SLIM   PSSM Match Cutoff 23.0648891012651
SLIM   I=181997 Im=5019 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 I(2.939) L(2.769) V(1.769) M(0.992) F(-0.57) C(-1.57) A(-1.57) Y(-1.57) S(-2.57) T(-2.57) Q(-3.00) R(-3.00)
K(-3.00) W(-3.00) P(-3.57) N(-3.57) E(-3.57) H(-3.57) D(-3.90) G(-4.57)
Gap (0)
Pos 1 Q(4.206) E(3.706) G(3.247) K(2.428) T(2.068) S(1.518) D(1.005) R(0.682) N(0.051) H(-0.14) P(-0.43) M(-0.56)
A(-0.59) Y(-1.46) V(-1.81) L(-2.23) C(-2.28) W(-2.37) F(-2.72) I(-2.75)
Gap (0)
Pos 2 K(3.853) S(3.540) E(2.374) R(0.956) T(0.729) N(0.729) Q(0.660) A(0.608) D(0.183) G(-0.39) H(-0.89) P(-1) M(-
1.04) C(-1.39) Y(-2) L(-2.04) I(-2.27) V(-2.27) F(-2.27) W(-3)
Gap (0)
Pos 3 L(3.873) V(3.194) I(2.194) M(1.917) F(-0.08) A(-0.80) C(-1) Y(-1) S(-2) T(-2) Q(-2) K(-2) R(-2.08) W(-2.08)
P(-2.80) E(-2.80) N(-3) H(-3) G(-3.80) D(-3.80)
Gap (0)
Pos 4 E(4.715) N(3.268) K(2.476) R(2.358) Q(1.792) D(1.758) S(1.485) T(0.065) H(-0.12) A(-0.69) P(-1.08) G(-1.41)
M(-1.72) Y(-2) L(-2.72) I(-2.89) V(-2.89) F(-2.89) W(-3.04) C(-3.07)
Gap (0)
Pos 5 V(3.647) I(3.429) L(1.429) M(1) A(-0.22) F(-0.57) C(-1) Y(-1) S(-2) T(-2) P(-2.22) E(-2.22) Q(-2.22) K(-2.22)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.22)
Gap (0)
Pos 6 I(3.792) K(2.926) L(1.796) T(1.293) M(0.823) V(0.798) R(-0.01) F(-0.18) E(-0.81) Q(-0.81) S(-0.90) A(-1) C(-
1.11) Y(-1.12) P(-1.36) D(-1.36) N(-1.47) G(-1.60) H(-1.90) W(-3)
Gap (0)
Pos 7 P(5.837) G(3.924) K(2.943) E(2.289) S(1.981) T(0.540) R(0.087) Q(0.056) D(-0.23) N(-0.41) A(-0.43) H(-1.54)
V(-1.64) M(-1.90) C(-2.58) Y(-2.74) L(-2.90) I(-3.12) F(-3.26) W(-3.26)
Gap (0)
Pos 8 P(5.326) A(2.632) K(2.251) S(1.440) T(-0.18) R(-0.50) E(-0.93) Q(-0.93) N(-0.93) G(-1.06) C(-1.25) D(-1.66)
M(-1.81) L(-2.13) I(-2.18) H(-2.25) V(-2.64) Y(-2.81) F(-3.01) W(-3.81)
//

===============================
 SLIM 178
===============================
ID           IL8.clust.0.25.5
Center             1hum_AB_0
AvSimToCtr 0.433
AvRMSDToCtr 1.508 A
Size         9
NumDistinct 6
FracDDI            0.666666666666667
FracPeptides       0
FracIntra    0
Species            HUMAN HERPESVIRUS 8 (3), HOMO SAPIENS (2)
Conservation       0.6

Members
      1dok_AB_0 1dok_BA_0 1zxt_AB_0 1zxt_BA_0 1zxt_CD_0 1zxt_DC_0 1hum_BA_0 1hun_AB_0 1hun_BA_0

Peptides

PartnerDomains
      IL8 (1hum_AB_0,1zxt_AB_0,1zxt_BA_0,1zxt_CD_0)

Dist Members Intf Alignment
      1hum_AB_0   P     M     G     S     D     P     P        T   A    C     C     F     S       Y   T     L        F
      Y     T     L     C     S     Q     V     T     R        S   K    Q     V     C
      1dok_AB_0                           N     A     P        V   T    C     C     Y     N       F   T
                  K     C           P     I                        K    E     I     C
      1dok_BA_0                     D     N     A     P        V   T    C     C     Y     N       F   T
      R           K     C           P     I                        K    E     I     C
      1zxt_AB_0                     V     Y     T     P        N   S    C     C     Y     G       F   Q
                  A     C           P     I                        R    Q     I     C
      1zxt_BA_0                           Y     T     P        N   S    C     C     Y     G       F   Q
            T     A                 P     I                        R    Q     I     C
        1zxt_CD_0                           Y     T     P     N     S     C     C     Y    G     F    Q
                    A           P           I                             Q     I     C

Dist Members ResidueID Alignment
      1hum_AB_0   2     3     4       5     6     7     8     9     10    11    12    13   14    15   16    20
      24    29    31    34    35      36    37    41    44    46    47    48    49    50   51
      1dok_AB_0                             6     7     8     9     10    11    12    13   14    15   16
                  35    36            37    42                      49    50    51    52
      1dok_BA_0                       3     6     7     8     9     10    11    12    13   14    15   16
      29          35    36            37    42                      49    50    51    52
      1zxt_AB_0                       5     7     8     9     10    11    12    13    14   15    16   17
                  35    36            37    42                      49    50    51    52
      1zxt_BA_0                             7     8     9     10    11    12    13    14   15    16   17
            32    35                  37    42                      49    50    51    52
      1zxt_CD_0                             7     8     9     10    11    12    13    14   15    16   17
                  35          37            42                            50    51    52

Alignment Occupancy     0.166 0.166 0.166 0.5   1     1       1     1     1     1     1    1     1    1     1
      0.166 0.166 0.333 0.333 1     0.666 0.333 0.833 1       0.166 0.166 0.166 0.833 1    1     1
Gap in betw Columns     0,2   0     0     0     0     0       0     0     0     0     0    17,18 0    0,1   3,4   6
      0     0     0

SLIM   RegEx        [SDV].{0,2}[YND][TAP]P[NVT][STA]CC[YF][GNS][FY][QT]
SLIM   Coverage           0.833333333333333
SLIM   PSSM Match Cutoff 28.0042272875055
SLIM   I=181997 Im=2917 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 D(4.210) S(2.228) V(2.211) I(1.217) E(0.351) T(-0.07) N(-0.08) A(-0.44) M(-0.64) L(-0.73) Q(-1.03) K(-1.38)
G(-1.44) P(-1.92) C(-2.03) H(-2.03) R(-2.38) F(-2.38) Y(-2.38) W(-3.92)
Gap (0,2)
Pos 1 Y(6.306) N(4.905) D(4.221) F(2.309) H(1.355) W(1.309) E(0.490) S(0.131) T(-0.15) Q(-0.37) K(-0.77) R(-0.85)
G(-0.86) M(-1.43) I(-1.56) V(-1.56) L(-1.59) A(-2) P(-2.03) C(-2.37)
Gap (0)
Pos 2 P(5.216) T(3.327) A(2.914) S(0.844) G(0.539) D(0.382) N(-0.37) E(-0.37) Q(-0.37) K(-0.37) H(-0.56) C(-0.64)
R(-1.11) M(-1.11) I(-1.61) L(-1.61) V(-2) Y(-2.11) F(-2.15) W(-3.11)
Gap (0)
Pos 3 P(7) T(1) S(-1) A(-1) N(-1) D(-1) E(-1) Q(-1) K(-1) G(-2) H(-2) R(-2) M(-2) V(-2) C(-3) I(-3) L(-3) Y(-3) F(-
4) W(-4)
Gap (0)
Pos 4 N(5.307) V(2.903) T(2.266) I(1.908) S(0.619) D(0.603) M(0.034) G(-0.03) L(-0.04) E(-0.33) Q(-0.33) K(-0.33)
R(-0.54) P(-0.56) A(-0.77) H(-1.00) Y(-1.54) C(-1.56) F(-1.77) W(-3.37)
Gap (0)
Pos 5 S(3.355) T(2.976) A(2.359) N(0.561) G(0.452) D(0.356) P(0.140) E(-0.11) Q(-0.11) K(-0.11) H(-0.61) C(-0.74)
R(-1) M(-1) I(-1.74) L(-1.74) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 6 C(9) A(0) S(-1) T(-1) M(-1) I(-1) L(-1) V(-1) F(-2) Y(-2) W(-2) P(-3) G(-3) N(-3) D(-3) Q(-3) H(-3) R(-3) K(-
3) E(-4)
Gap (0)
Pos 7 C(9) A(0) S(-1) T(-1) M(-1) I(-1) L(-1) V(-1) F(-2) Y(-2) W(-2) P(-3) G(-3) N(-3) D(-3) Q(-3) H(-3) R(-3) K(-
3) E(-4)
Gap (0)
Pos 8 Y(6.821) F(4.430) W(1.888) H(1.827) M(-0.74) I(-0.74) L(-0.74) V(-1) Q(-1.15) C(-2) S(-2) T(-2) A(-2) N(-2.11)
E(-2.11) R(-2.11) K(-2.11) G(-3) D(-3) P(-3.11)
Gap (0)
Pos 9 G(5.309) N(4.905) S(2.351) T(0.763) D(0.228) A(-0.00) E(-0.56) Q(-0.56) K(-0.56) V(-0.61) R(-0.77) H(-1.37)
P(-1.74) M(-2.03) C(-2.27) Y(-2.37) W(-2.50) F(-2.74) I(-3.03) L(-3.03)
Gap (0)
Pos 10 F(5.827) Y(5.295) W(1.251) H(0.430) M(-0.11) I(-0.11) L(-0.11) V(-1) C(-2) S(-2) T(-2) A(-2) Q(-2.27) N(-
2.74) E(-2.74) R(-2.74) K(-2.74) G(-3) D(-3) P(-3.74)
Gap (0)
Pos 11 Q(4.313) T(3.325) E(1.433) S(0.620) D(0.620) K(0.620) P(0.433) R(0.433) G(0.355) N(0) H(0) M(-0.37) A(-1)
Y(-1.37) C(-1.56) L(-2) V(-2) I(-2.37) F(-2.37) W(-2.37)
//

===============================
 SLIM 179
===============================
ID           IRS.clust.0.15.0
Center             1y19_BC_1
AvSimToCtr 0.451
AvRMSDToCtr 1.259 A
Size         19
NumDistinct 10
FracDDI            0.1
FracPeptides       0.7
FracIntra    0.1
Species            HOMO SAPIENS (3), MUS MUSCULUS (1)
Conservation       0.75

Members
      1irs_AB_0 1uef_AC_0 1uef_BD_0 1mk7_BC_1 1mk9_BC_1 1mk9_FG_1 1mk9_DA_1 1y19_HE_1 1y19_JK_1 1y19_DA_1
      1y19_FG_1 1y19_LI_1 2k00_AB_0 2g35_AB_0 2h7d_AB_0 2h7e_AB_0 1xr0_BA_0 2ys5_AB_0 2yt2_AA_0

Peptides
      1y19-C 1irs-B 1uef-C 1mk7-C 1mk9-G 2k00-B 2ys5-B

PartnerDomains
        Integrin_b_cyt (2h7d_AB_0)

Dist Members Intf Alignment
      1y19_BC_1   S     W       V     Y     S     P     L     H
      1irs_AB_0         I       A     G     N     P
      1uef_AC_0         W       I     E     N           L     Y
      1mk7_BC_1         W       D     T     A
      1mk9_FG_1         W       D     T     A                 N
      2k00_AB_0         W       V     E     N           I
      2h7d_AB_0         W       V     Y     S     P     L     H
      1xr0_BA_0         L       R     Q     V     T     V     S
      2ys5_AB_0   N     V       N     Y                 Y
      2yt2_AA_0         C       N     V     N     Y     Y     Q

Dist Members ResidueID Alignment
      1y19_BC_1   641   642   643     644   645   646   647   648
      1irs_AB_0         491   492     493   494   495
      1uef_AC_0         3     4       5     6           8     9
      1mk7_BC_1         739   740     741   742
      1mk9_FG_1         739   740     741   742               744
      2k00_AB_0         374   375     376   377         379
      2h7d_AB_0         739   740     741   742   743   744   745
      1xr0_BA_0         423   425     426   427   428   429   430
      2ys5_AB_0   11    12    13      14                16
      2yt2_AA_0         143   145     146   147   148   150   151

Alignment Occupancy       0.2   1     1     1     0.9   0.5   0.7   0.6
Gap in betw Columns       0,1   0     0     0     0,1   0

SLIM   RegEx        [WCILV].{0,1}[VNDARI][YTEQGV][NASV][PTY].{0,1}[LYIV][HSQNY]
SLIM   Coverage           0.6
SLIM   PSSM Match Cutoff 27.4930963998068
SLIM   I=181997 Im=4934 Id=9 Idm=1
SLIM   PSSM p-value 0.195840886446061

PSSM Listing
Pos 0 W(10.48) C(6.697) I(2.113) V(2.055) L(1.885) Y(1.516) F(0.631) M(0.431) A(-1.19) Q(-2.13) S(-2.23) T(-2.23)
H(-2.29) G(-2.35) K(-2.70) R(-2.84) E(-2.89) P(-3.23) N(-3.47) D(-3.58)
Gap (0,1)
Pos 1 N(4.399) D(4.397) V(2.814) R(2.716) I(2.446) A(1.772) E(0.620) L(0.481) M(0.180) S(0.101) K(0.090) T(-0.13)
Q(-0.28) G(-0.90) H(-1.27) C(-1.30) F(-1.39) Y(-1.55) P(-1.62) W(-3.29)
Gap (0)
Pos 2 Y(5.796) G(3.712) E(3.423) Q(2.812) T(2.446) F(1.809) V(1.744) H(1.006) W(0.819) D(0.778) I(0.771) K(0.079)
S(-0.00) P(-0.36) R(-0.50) M(-0.53) N(-0.58) L(-0.83) A(-0.85) C(-1.80)
Gap (0)
Pos 3 N(5.087) S(2.530) A(2.452) V(1.710) I(0.755) D(0.277) T(0.030) G(-0.21)   E(-0.37) Q(-0.37) K(-0.37) R(-0.59)
M(-0.74) L(-0.93) C(-1.10) H(-1.37) P(-1.53) Y(-1.93) F(-2.19) W(-3.43)
Gap (0)
Pos 4 P(5.796) Y(4.697) T(1.838) F(0.706) H(-0.12) W(-0.28) S(-0.92) D(-0.94)   G(-1.14) Q(-1.39) N(-1.49) E(-1.49)
K(-1.49) A(-1.82) M(-2.17) R(-2.39) V(-2.39) C(-2.72) I(-2.72) L(-2.72)
Gap (0,1)
Pos 5 Y(5.391) L(2.860) V(2.470) I(2.278) F(1.493) M(1.041) W(0.424) H(0.407)   A(-1.29) C(-1.55) Q(-2.01) S(-2.35)
T(-2.35) K(-2.45) R(-2.55) E(-2.80) N(-2.95) P(-3.13) D(-3.67) G(-3.80)
Gap (0)
Pos 6 H(6.392) Y(4.711) N(3.720) Q(2.726) S(1.778) F(0.744) E(0.141) D(0.020)   W(-0.24) T(-0.37) R(-0.47) K(-0.58)
A(-1.01) G(-1.40) M(-1.54) P(-2.12) V(-2.34) L(-2.54) I(-2.65) C(-2.65)
//

===============================
 SLIM 180
===============================
ID           IU_nuc_hydro.clust.0.15.1
Center             1q8f_AC_0
AvSimToCtr 0.503
AvRMSDToCtr 1.009 A
Size         17
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            CRITHIDIA FASCICULATA (2), ESCHERICHIA COLI (1), LEISHMANIA MAJOR (1)
Conservation       0.5

Members
      1ezr_AB_0 1ezr_CD_0 1ezr_BA_0 1ezr_DC_0 1mas_AB_0 1mas_BA_0 2mas_AD_0 2mas_DA_0 2mas_BC_0 2mas_CB_0
      1q8f_CA_0 1q8f_BD_0 1q8f_DB_0 3b9x_AC_0 3b9x_CA_0 3b9x_BD_0 3b9x_DB_0

Peptides

PartnerDomains
      IU_nuc_hydro (1q8f_AC_0,1ezr_AB_0,1mas_AB_0,2mas_AD_0)

Dist Members Intf   Alignment
      1q8f_AC_0     Y     G     T   G     N     F     T        P   S    N       Y     E     V     D     N     S       G
      P     C       R     V     C   D     E     L     V        L
      1ezr_AB_0           H         G     N     A     S        P   V                  D     I     E     N             A
      L     T       M     V     A   D
      1mas_AB_0           H         G     N     A     T        S   V                  D     I     E     T             K
      L     T       M     V     A   D
        2mas_AD_0         H           G      N     A     T      S     V     R           D      I     E     T           K
        L     T     M     V      A    D            R

Dist Members ResidueID Alignment
      1q8f_AC_0   154   155   156     157    158   159   160    161   162   230   231   261    262   263   265   266
      267   268   269   272   274     275    276   277   278    280   281
      1ezr_AB_0         157           159    160   161   162    163   164               262    263   264   266
      268   269   270   273   275     276    277
      1mas_AB_0         157           159    160   161   162    163   164               263    264   265   267
      269   270   271   274   276     277    278
      2mas_AD_0         157           159    160   161   162    163   164   233         263    264   265   267
      269   270   271   274   276     277    278         280

Alignment Occupancy       0.25   1    0.25   1     1     1      1     1     1     0.5   0.25   1     1     1     1
      0.25 1      1       1      1    1      1     1     0.25   0.5   0.25 0.25
Gap in betw Columns       1      0    0      0     0     0      67,68 29,30 0     0     1      1     0     0     2     1
      0     0     1

SLIM   RegEx        [DE][IV][ED].[TN].[KAG][LP][TC]..[MR].V[AC]D.[RL]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 24.6108856693357
SLIM   I=181997 Im=6498 Id=6 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 D(5.718) E(3.752) Q(0.954) T(0.827) N(0.827) S(0) K(-0.04) H(-0.64) P(-1) R(-1.04) G(-1.17) A(-1.64) M(-2.64)
Y(-2.64) I(-3) V(-3) F(-3) C(-3.17) L(-3.64) W(-3.64)
Gap (0)
Pos 1 I(3.827) V(2.752) L(1.827) M(1) F(-0.17) A(-0.64) C(-1) Y(-1) S(-2) T(-2) P(-2.64) E(-2.64) Q(-2.64) K(-2.64)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.64)
Gap (0)
Pos 2 E(4.728) D(4.667) Q(1.756) K(0.756) T(0.357) N(0.357) S(0) H(-0.17) R(-0.24) P(-1) A(-1.17) G(-1.64) M(-2.17)
Y(-2.17) I(-3) V(-3) F(-3) L(-3.17) W(-3.17) C(-3.64)
Gap (1)
Pos 3 N(5.309) T(3.325) S(1) D(1) G(0.620) P(0.355) E(0) Q(0) K(0) H(-0.37) R(-0.37) A(-1.37) M(-1.37) C(-1.56) Y(-
2) I(-2.37) L(-2.37) V(-2.37) F(-2.37) W(-3.37)
Gap (1)
Pos 4 G(4.616) K(4.308) A(2.645) R(1.340) E(0.395) Q(0.395) S(0.357) T(0.240) N(-0.46) P(-1.17) D(-1.17) V(-1.17)
M(-1.24) C(-1.24) H(-1.37) L(-1.80) I(-2.10) Y(-2.17) F(-2.64) W(-2.64)
Gap (0)
Pos 5 P(5.613) L(3.712) V(2.714) M(1.718) I(1.714) T(-0.24) F(-0.28) A(-1) C(-1.24) Y(-1.24) S(-1.64) Q(-1.64) K(-
1.64) R(-2) N(-2.04) E(-2.04) W(-2.24) D(-2.24) H(-2.64) G(-3.04)
Gap (0)
Pos 6 C(7.613) T(3.714) S(0.756) P(0.718) G(0.718) D(0.718) N(-0.27) Q(-0.27) H(-0.27) K(-0.27) E(-0.28) A(-0.64)
M(-1) R(-1.24) I(-1.64) L(-1.64) V(-1.64) F(-2) Y(-2) W(-2.64)
Gap (2)
Pos 7 M(4.713) R(3.621) L(1.718) K(0.752) I(0.718) Q(0.357) F(-0.27) S(-1) T(-1) A(-1) N(-1.04) E(-1.04) H(-1.04)
Y(-1.17) C(-1.24) W(-1.24) P(-2) V(-2.17) G(-2.64) D(-2.64)
Gap (1)
Pos 8 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (0)
Pos 9 C(7.614) A(3.718) S(0.756) G(-0.27) T(-1) M(-1) I(-1) L(-1) P(-1.24) N(-1.24) Q(-1.24) R(-1.24) K(-1.24) E(-
1.27) V(-1.64) F(-2) Y(-2) D(-2.17) H(-2.17) W(-2.64)
Gap (0)
Pos 10 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (1)
Pos 11 R(3.614) L(2.616) V(1.616) M(0.662) K(0.631) I(0.620) Q(-0.33) N(-1.33) E(-1.33) H(-1.33) F(-1.33) A(-1.69)
S(-2.07) T(-2.07) Y(-2.07) C(-2.25) P(-3.07) W(-3.07) G(-3.25) D(-3.25)
//

===============================
 SLIM 181
===============================
ID           IgG_binding_B.clust.0.2.3
Center             1uwx_AH_0
AvSimToCtr 0.384
AvRMSDToCtr 1.026 A
Size         9
NumDistinct 6
FracDDI            0
FracPeptides       0
FracIntra    0
Species            MUS MUSCULUS (3), PEPTOSTREPTOCOCCUS MAGNUS (1)
Conservation       0.75

Members
      1igc_AH_0 1qkz_AH_0 1uwx_BM_0 2rmm_AB_0 2rmm_BA_0 3fil_AB_0 3fil_BA_0 1mi0_AB_0 1mi0_BA_0

Peptides

PartnerDomains

Dist Members Intf   Alignment
      1uwx_AH_0     A     P     S   V     Y     S     S     T        K   V    D     K     K       E
      1igc_AH_0     P     P     S   V     Y     S     S     T        K   V    D     K     K       V
      1qkz_AH_0     A     P     S   V     Y     S     S     T        K   V    D     K     K       V
      2rmm_AB_0                                             G        E   T    T
      3fil_AB_0                                             G        V   L    T
        1mi0_AB_0                                       T     T     F     T     Y     T     T     E

Dist Members ResidueID Alignment
      1uwx_AH_0   118   119   120     121   122   202   203   204   205   206   207   208   209   211
      1igc_AH_0   125   126   127     128   129   209   210   211   212   213   214   215   216   218
      1qkz_AH_0   118   119   120     121   122   202   203   204   205   206   207   208   209   211
      2rmm_AB_0                                               14    15    16    17
      3fil_AB_0                                               14    15    16    17
      1mi0_AB_0                                         18    19    20    21    22    23    24    25

Alignment Occupancy       0.5   0.5   0.5   0.5   0.5   0.5   0.666 1     1     1     1     0.666 0.666 0.666
Gap in betw Columns       0     0     0     0     73,79 0     0     0     0     0     0     0     0,1

SLIM   RegEx        S[ST][TG][KFEV][VTL][DTY][KT][KT].{0,1}[EV]
SLIM   Coverage           0.833333333333333
SLIM   PSSM Match Cutoff 21.7098262894405
SLIM   I=181997 Im=8490 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 S(3.306) T(0.306) A(0.306) N(0.306) G(-0.69) D(-0.69) E(-0.69) Q(-0.69)   K(-0.69) C(-1.69) P(-1.69) H(-1.69)
R(-1.69) M(-1.69) I(-2.69) L(-2.69) V(-2.69) F(-2.69) Y(-2.69) W(-3.69)
Gap (0)
Pos 1 S(3.323) T(2.347) N(0.422) A(0.350) G(-0.04) D(-0.04) E(-0.40) Q(-0.40)   K(-0.40) P(-0.45) H(-1.04) C(-1.40)
R(-1.40) M(-1.40) I(-2.40) L(-2.40) V(-2.40) F(-2.40) Y(-2.40) W(-3.40)
Gap (0)
Pos 2 G(4.914) T(3.619) S(0.763) D(0.660) P(0.619) N(-0.33) E(-0.33) Q(-0.33)   H(-0.33) K(-0.33) A(-0.54) V(-0.85)
R(-1.23) C(-1.33) M(-1.33) F(-2.23) Y(-2.23) I(-2.33) L(-2.33) W(-2.54)
Gap (0)
Pos 3 K(4.313) F(4.209) E(3.262) V(2.218) R(1.355) I(1.266) Y(1.252) Q(0.963)   D(0.359) M(-0.19) S(-0.33) T(-0.33)
L(-0.36) N(-0.38) W(-0.70) A(-0.83) H(-0.86) P(-1.30) C(-2.19) G(-2.23)
Gap (0)
Pos 4 V(3.423) T(2.906) I(2.426) L(2.351) M(0.998) S(-0.00) P(-0.01) G(-0.06)   D(-0.06) A(-0.37) Q(-0.85) K(-0.85)
E(-0.89) F(-0.92) C(-1) N(-1.00) H(-1.00) Y(-1.23) R(-1.77) W(-2.74)
Gap (0)
Pos 5 D(5.311) Y(5.208) T(2.974) E(1.398) F(1.228) H(0.558) N(0.539) S(0.356)   W(0.228) P(0.093) G(0.093) Q(-0.11)
K(-0.61) A(-1.54) R(-1.54) M(-1.56) C(-1.77) I(-2.03) V(-2.03) L(-2.15)
Gap (0)
Pos 6 K(4.309) T(2.261) R(1.323) E(0.422) Q(0.422) S(-0.04) N(-0.40) P(-0.45)   D(-0.45) G(-0.65) H(-1.04) A(-1.40)
M(-1.40) L(-2.40) Y(-2.40) C(-2.45) I(-3.04) V(-3.04) F(-3.04) W(-3.40)
Gap (0)
Pos 7 K(4.309) T(2.261) R(1.323) E(0.422) Q(0.422) S(-0.04) N(-0.40) P(-0.45)   D(-0.45) G(-0.65) H(-1.04) A(-1.40)
M(-1.40) L(-2.40) Y(-2.40) C(-2.45) I(-3.04) V(-3.04) F(-3.04) W(-3.40)
Gap (0,1)
Pos 8 E(3.902) V(2.902) I(1.903) Q(0.919) D(0.908) K(-0.05) M(-0.05) L(-0.08) A(-0.78) S(-0.97) T(-0.97) N(-1.05)
H(-1.05) R(-1.05) P(-1.78) Y(-1.78) F(-1.97) C(-2.05) G(-2.78) W(-3.40)
//

===============================
 SLIM 182
===============================
ID           Ion_trans_2.clust.0.25.2
Center             1j95_CB_0
AvSimToCtr 0.583
AvRMSDToCtr 0.748 A
Size         13
NumDistinct 4
FracDDI            0.75
FracPeptides       0
FracIntra    0
Species            STREPTOMYCES LIVIDANS (2), MAGNETOSPIRILLUM MAGNETOTACTICUM (2)
Conservation       0.5

Members
      1j95_AD_0 1j95_BA_0 1j95_DC_0 1jvm_AD_0 1jvm_DC_0 1jvm_BA_0 1jvm_CB_0 2a9h_AD_0 2a9h_BA_0 2a9h_DC_0
      2a9h_CB_0 1xl4_AB_1 1xl6_AB_1

Peptides

PartnerDomains
      Ion_trans_2 (1j95_CB_0,2a9h_AD_0)
      IRK (1xl4_AB_1)

Dist Members Intf Alignment
      1j95_CB_0   P     W     V     E     T     T     V     G     Y     G     D      F     T     L     A     F      V
      E
      2a9h_AD_0   P     W     V     E     T     T     V     G     Y     G     D      Y     F     V     A     F      V
      1xl4_AB_1         F     V     Q     A     T     I     G     Y           K
      1xl6_AB_1         F     V     Q     A     T     I     G     Y           K                  I     Y     F

Dist Members ResidueID Alignment
      1j95_CB_0   63    67    70    71    74    75    76    77    78    79    80     103   107   110   111   114
      115   118
      2a9h_AD_0   63    67    70    71    74    75    76    77    78    79    80     103   107   110   111   114
      115
      1xl4_AB_1         88    91    92    95    96    97    98    99          101
      1xl6_AB_1         88    91    92    95    96    97    98    99          101                131   132   135
Alignment Occupancy       0.5   1     1     1     1      1   1    1     1     0.5   1     0.5   0.5   0.75   0.75
      0.75 0.5    0.25
Gap in betw Columns       3     2     0     2     0      0   0    0     0     0     22    3     2     0      2      0

SLIM   RegEx        P.{3}[FW]..V[QE]..[AT]T[IV]GYG[DK]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 21.583808314127
SLIM   I=181997 Im=4378 Id=15 Idm=2
SLIM   PSSM p-value 0.044269077970378

PSSM Listing
Pos 0 P(6.306) T(0.306) S(-1.69) A(-1.69) N(-1.69) D(-1.69) E(-1.69) Q(-1.69) K(-1.69) G(-2.69) H(-2.69) R(-2.69)
M(-2.69) V(-2.69) C(-3.69) I(-3.69) L(-3.69) Y(-3.69) F(-4.69) W(-4.69)
Gap (3)
Pos 1 W(10.30) F(5.313) Y(2.620) M(-0.37) L(-0.56) I(-0.64) H(-1.37) V(-1.56) C(-2) S(-2.37) T(-2.37) A(-2.37) G(-
2.37) Q(-2.37) E(-3) R(-3) K(-3) N(-3.37) D(-3.37) P(-4)
Gap (2)
Pos 2 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (0)
Pos 3 E(4.355) Q(4.355) D(1.433) K(1) R(0.620) S(0) T(0) N(0) H(0) M(-0.56) P(-1) A(-1) Y(-1.37) G(-2) L(-2.37) V(-
2.37) W(-2.37) I(-3) F(-3) C(-3.37)
Gap (2)
Pos 4 T(3.313) A(3.313) S(1) G(0.620) P(0.433) D(0.355) C(-0.37) N(-0.37) E(-0.37) Q(-0.37) K(-0.37) H(-0.56) R(-1)
M(-1) I(-1.37) L(-1.37) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 5 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 6 I(3.620) V(3.355) L(1.620) M(1) A(-0.37) F(-0.37) C(-1) Y(-1) S(-2) T(-2) P(-2.37) E(-2.37) Q(-2.37) K(-2.37)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.37)
Gap (0)
Pos 7 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 8 Y(7) F(3) H(2) W(2) Q(-1) M(-1) I(-1) L(-1) V(-1) C(-2) S(-2) T(-2) A(-2) N(-2) E(-2) R(-2) K(-2) P(-3) G(-3)
D(-3)
Gap (0)
Pos 9 G(5.306) T(0.306) S(-0.69) A(-0.69) V(-0.69) D(-1.69) P(-2.69) N(-2.69) E(-2.69) Q(-2.69) H(-2.69) R(-2.69)
K(-2.69) W(-2.69) C(-3.69) M(-3.69) F(-3.69) Y(-3.69) I(-4.69) L(-4.69)
Gap (0)
Pos 10 D(5.307) K(4.309) E(1.620) R(1.325) T(0.620) N(0.620) Q(0.620) S(0) P(-1) H(-1) A(-1.37) G(-1.37) M(-1.56)
Y(-2.37) L(-2.56) C(-3) I(-3) V(-3) F(-3) W(-3.37)
//

===============================
 SLIM 183
===============================
ID           Jacalin.clust.0.15.1
Center             1xxq_CD_0
AvSimToCtr 0.659
AvRMSDToCtr 0.481 A
Size         81
NumDistinct 9
FracDDI            0.222222222222222
FracPeptides       0.444444444444444
FracIntra    0
Species            ARTOCARPUS INTEGER (5), ARTOCARPUS HIRSUTA (1), ARTOCARPUS INTEGRIFOLIA (1), MORUS NIGRA (1)
Conservation       0.625

Members
      1j4s_AC_0   1j4s_BD_0   1j4s_CA_0   1j4s_DB_0   1j4t_AC_0   1j4t_EG_0   1j4t_GE_0   1j4u_AC_0   1j4u_DB_0   1j4u_BD_0
      1j4u_CA_0   1vbo_AC_0   1vbo_BD_0   1vbo_EG_0   1vbo_GE_0   1vbo_CA_0   1vbo_HF_0   1vbo_DB_0   1vbo_FH_0   1kuj_EA_0
      1toq_AE_0   1toq_EA_0   1toq_GC_0   1ugw_EA_0   1ws4_EA_0   1ws5_EA_0   1ugy_EA_0   1ugy_GC_0   1ws4_AE_0   1tp8_AE_0
      1tp8_EA_0   1tp8_CG_0   1tp8_GC_0   1j4t_BD_0   1xxq_AB_0   1xxr_AB_0   1xxr_CD_0   1xxq_BA_0   1xxr_BA_0   1xxq_DC_0
      1xxr_DC_0   1j4t_CA_0   1j4t_DB_0   1j4t_HF_0   1j4t_FH_0   1ku8_AF_0   1kuj_AF_0   1ku8_GD_0   1kuj_CH_0   1kuj_GD_0
      1ugw_CH_0   1ugy_CH_0   1ws4_CH_0   1ws5_CH_0   1m26_AF_0   1m26_GD_0   1ugw_AF_0   1ws4_AF_0   1ws5_AF_0   1ugy_AF_0
      1ugw_GD_0   1ugy_GD_0   1ws4_GD_0   1ws5_GD_0   1toq_CH_0   1ku8_CH_0   1kuj_EB_0   1ugw_EB_0   1ugy_EB_0   1ws4_EB_0
      1ws5_EB_0   1ku8_EB_0   1m26_EB_0   1toq_EB_0   1toq_GD_0   1m26_CH_0   1toq_AF_0   1tp8_AF_0   1tp8_EB_0   1tp8_CH_0
      1tp8_GD_0

Peptides
      1ku8-F 1ugw-H 1ugy-H 1toq-H

PartnerDomains
      Jacalin (1kuj_EA_0,1toq_AE_0)

Dist Members Intf Alignment
      1xxq_CD_0   T     Q         T       T     G       T     S       Q       D     G       S     Y       T       L     N     F
      1j4s_AC_0                                         A     S       Q       E     G       S     Y               L     N     F
      1j4t_AC_0                                               S       Q       E     G       S     Y       T       L     N     F
      1kuj_EA_0                                                               D     G       A     F               L     N     Y
      1toq_AE_0                                                               D     G       A     F       T       L     N     Y
      1ku8_AF_0                           S     G       I     S       Q
      1ugw_CH_0                           S     G       I     S       Q
      1ugy_CH_0                   Q       S     G       I     S       Q
      1toq_CH_0                           S     G       K     S       Q

Dist Members ResidueID Alignment
      1xxq_CD_0   8     9     10          11    12      13    14      15      32    33      34    35      36      58    59    63
      1j4s_AC_0                                         1     2       3       20    21      22    23              46    47    51
        1j4t_AC_0                                       2     3     20    21    22    23    24    46    47    51
        1kuj_EA_0                                                   6     7     8     9           34    35    39
        1toq_AE_0                                                   6     7     8     9     10    34    35    39
        1ku8_AF_0                     4       5   6     7     8
        1ugw_CH_0                     4       5   6     7     8
        1ugy_CH_0               3     4       5   6     7     8
        1toq_CH_0                     4       5   6     7     8

Alignment Occupancy       0.111 0.111 0.222 0.555 0.555 0.666 0.777 0.777 0.555 0.555 0.555 0.555 0.333 0.555 0.555
      0.555
Gap in betw Columns       0     0     0       0   16    0     0     0     22,24 0     3

SLIM   RegEx        [ST]G[IATK]SQ
SLIM   Coverage           0.888888888888889
SLIM   PSSM Match Cutoff 14.7987296523785
SLIM   I=181997 Im=8716 Id=3 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 S(3.201) T(1.984) N(0.277) A(0.222) G(-0.29) D(-0.29) E(-0.58) Q(-0.58)   K(-0.58) P(-0.76) H(-1.29) C(-1.58)
R(-1.58) M(-1.58) I(-2.58) L(-2.58) V(-2.58) F(-2.58) Y(-2.58) W(-3.58)
Gap (0)
Pos 1 G(5.412) T(0.412) S(-0.58) A(-0.58) V(-0.58) D(-1.58) P(-2.58) N(-2.58)   E(-2.58) Q(-2.58) H(-2.58) R(-2.58)
K(-2.58) W(-2.58) C(-3.58) M(-3.58) F(-3.58) Y(-3.58) I(-4.58) L(-4.58)
Gap (0)
Pos 2 I(2.904) K(2.812) A(1.835) T(1.834) L(0.929) M(0.028) V(-0.06) R(-0.08)   S(-0.27) E(-0.75) Q(-0.75) G(-0.83)
P(-0.91) D(-0.98) F(-0.99) C(-1.27) N(-1.27) H(-1.69) Y(-1.78) W(-3.40)
Gap (0)
Pos 3 S(3.748) T(0.748) A(0.748) N(0.748) G(-0.25) D(-0.25) E(-0.25) Q(-0.25)   K(-0.25) C(-1.25) P(-1.25) H(-1.25)
R(-1.25) M(-1.25) I(-2.25) L(-2.25) V(-2.25) F(-2.25) Y(-2.25) W(-3.25)
Gap (0)
Pos 4 Q(4.748) E(1.748) R(0.748) K(0.748) S(-0.25) T(-0.25) N(-0.25) D(-0.25)   H(-0.25) M(-0.25) P(-1.25) A(-1.25)
Y(-1.25) G(-2.25) L(-2.25) V(-2.25) W(-2.25) C(-3.25) I(-3.25) F(-3.25)
//

===============================
 SLIM 184
===============================
ID          Jacalin.clust.0.2.0
Center            1ws5_AD_0
AvSimToCtr 0.698
AvRMSDToCtr 0.482 A
Size        85
NumDistinct 9
FracDDI           0
FracPeptides      0.333333333333333
FracIntra    0
Species           ARTOCARPUS INTEGER (3), PARKIA PLATYCEPHALA (2), MUSA ACUMINATA (1), ARTOCARPUS INTEGRIFOLIA (1),
MORUS NIGRA (1), ARTOCARPUS HETEROPHYLLUS (1)
Conservation      0.333333333333333

Members
      1j4s_AB_0   1j4t_EF_0   1j4s_CD_0   1j4s_DC_0   1j4t_AB_0   1vbo_AB_0   1vbo_BA_0   1vbo_EF_0   1vbo_FE_0   1vbo_CD_0
      1vbo_DC_0   1vbo_GH_0   1vbo_HG_0   1j4t_BA_0   1j4t_FE_0   1j4t_CD_0   1j4t_GH_0   1j4u_AB_0   1j4u_BA_0   1j4u_CD_0
      1j4u_DC_0   1j4t_DC_0   1j4t_HG_0   1j4s_BA_0   1jac_AD_0   1jac_GF_0   1jac_CB_0   1jac_EH_0   1ku8_AD_0   1kuj_AD_0
      1ku8_GF_0   1kuj_GF_0   1m26_AD_0   1ugw_CB_0   1ws4_CB_0   1ws5_CB_0   1ugy_CB_0   1m26_CB_0   1toq_AD_0   1toq_CB_0
      1ugw_AD_0   1ws4_AD_0   1ugy_AD_0   1ugw_EH_0   1ugy_EH_0   1ws4_EH_0   1ws5_EH_0   1toq_EH_0   1toq_GF_0   1ugw_GF_0
      1ws4_GF_0   1ws5_GF_0   1ugy_GF_0   1uh0_AD_0   1uh0_GF_0   1uh0_CB_0   1uh1_AD_0   1uh1_CB_0   1uh1_GF_0   1uh0_EH_0
      1uh1_EH_0   1ku8_CB_0   1ku8_EH_0   1kuj_CB_0   1kuj_EH_0   1tp8_AD_0   1tp8_CB_0   1tp8_EH_0   1tp8_GF_0   1m26_EH_0
      1m26_GF_0   1xxq_AD_0   1xxr_AD_0   1xxq_CB_0   1xxr_CB_0   1xxq_BC_0   1xxr_BC_0   1xxq_DA_0   1xxr_DA_0   1x1v_AB_0
      1x1v_BA_0   1zgr_AB_2   1zgr_BA_2   1zgs_AB_2   1zgs_BA_2

Peptides
      1ws5-D 1jac-H 1ku8-D

PartnerDomains

Dist Members Intf   Alignment
      1ws5_AD_0     Q     T       V       I     V       G     P       W
      1j4s_AB_0     Q     T       I       T     V       G     S       W
      1vbo_AB_0     Q     T       I       T     V       G     P       W
      1jac_EH_0     Q     T       V       I     V       G     S       W
      1ku8_AD_0     Q     T       V       I     V       G     P       W
      1xxq_AD_0     Q     T       I       E     V       G     L       W
      1x1v_AB_0                   I       K     V       G     A       W
      1zgr_AB_2     G     S       I       S     I       G             W
      1zgr_BA_2     G     S       I       S     I       G     P       W

Dist Members ResidueID Alignment
      1ws5_AD_0   8     9     10          11    12      13    14      15
      1j4s_AB_0   3     4     5           6     7       8     9       10
      1vbo_AB_0   3     4     5           6     7       8     9       10
      1jac_EH_0   8     9     10          11    12      13    14      15
      1ku8_AD_0   8     9     10          11    12      13    14      15
      1xxq_AD_0   15    16    17          18    19      20    21      22
      1x1v_AB_0               5           6     7       8     9       10
      1zgr_AB_2   299   300   301         302   303     304           306
      1zgr_BA_2   299   300   301         302   303     304   305     306

Alignment Occupancy       0.888 0.888 1         1       1     1       0.888 1
Gap in betw Columns       0     0     0     0     0   0     0

SLIM   RegEx        [QG][TS][IV][ISTKE][VI]G[PSAL]W
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 22.956229921957
SLIM   I=181997 Im=3742 Id=3 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(4.594) G(4.496) E(1.600) R(0.610) K(0.610) T(0.239) S(-0.11) D(-0.28) N(-0.36) H(-0.36) M(-0.38) A(-0.76)
V(-1.16) P(-1.28) Y(-1.36) W(-2.11) L(-2.36) C(-3.11) F(-3.11) I(-3.28)
Gap (0)
Pos 1 T(3.610) S(2.635) G(0.710) D(0.710) P(0.638) N(0.239) E(-0.11) Q(-0.11) K(-0.11) A(-0.16) H(-0.28) C(-1.11)
R(-1.11) M(-1.11) I(-2.11) L(-2.11) V(-2.11) F(-2.11) Y(-2.11) W(-3.11)
Gap (0)
Pos 2 I(3.763) V(2.996) L(1.763) M(1) F(-0.23) A(-0.54) C(-1) Y(-1) S(-2) T(-2) P(-2.54) E(-2.54) Q(-2.54) K(-2.54)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.54)
Gap (0)
Pos 3 I(2.905) E(2.848) K(2.848) S(2.565) T(2.565) L(0.933) D(0.533) Q(0.460) M(0.118) R(0.106) N(0.063) V(-0.02)
A(-0.11) G(-0.14) P(-0.24) H(-0.74) F(-0.90) C(-1.22) Y(-1.54) W(-3)
Gap (0)
Pos 4 V(3.762) I(3.323) L(1.323) M(1) A(-0.15) F(-0.67) C(-1) Y(-1) S(-2) T(-2) P(-2.15) E(-2.15) Q(-2.15) K(-2.15)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.15)
Gap (0)
Pos 5 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 6 P(6.189) S(2.534) A(1.927) L(1.818) V(0.848) T(0.624) M(0.003) I(-0.08) N(-0.20) Q(-0.81) K(-0.81) E(-0.83)
D(-0.90) G(-0.92) C(-1.36) R(-1.62) F(-1.80) H(-1.81) Y(-2.22) W(-3.22)
Gap (0)
Pos 7 W(11) Y(2) F(1) M(-1) C(-2) G(-2) Q(-2) H(-2) L(-2) S(-3) T(-3) A(-3) E(-3) R(-3) K(-3) I(-3) V(-3) P(-4) N(-
4) D(-4)
//

===============================
 SLIM 185
===============================
ID           Jacalin.clust.0.2.1
Center             1ugw_AB_0
AvSimToCtr 0.797
AvRMSDToCtr 0.236 A
Size         50
NumDistinct 4
FracDDI            0
FracPeptides       1
FracIntra    0
Species             ARTOCARPUS INTEGER (2), MACLURA POMIFERA (1), ARTOCARPUS HETEROPHYLLUS (1)
Conservation        0.5

Members
      1jac_AB_0   1jac_EF_0   1jac_CD_0   1jac_GH_0   1jot_AB_0   1ku8_AB_0   1ku8_EF_0   1m26_CD_0   1kuj_AB_0   1kuj_GH_0
      1pxd_AB_0   1ws4_AB_0   1ws5_AB_0   1ugx_AB_0   1ugw_GH_0   1ws4_GH_0   1ws5_GH_0   1ugy_AB_0   1ugw_CD_0   1ws4_CD_0
      1ws5_CD_0   1ugy_CD_0   1ugy_GH_0   1uh0_AB_0   1uh0_CD_0   1uh0_EF_0   1uh0_GH_0   1uh1_AB_0   1uh1_CD_0   1uh1_EF_0
      1uh1_GH_0   1toq_AB_0   1toq_CD_0   1toq_EF_0   1toq_GH_0   1ku8_GH_0   1ugw_EF_0   1ws4_EF_0   1ugy_EF_0   1ws5_EF_0
      1kuj_CD_0   1kuj_EF_0   1m26_AB_0   1m26_EF_0   1m26_GH_0   1tp8_AB_0   1tp8_EF_0   1tp8_CD_0   1tp8_GH_0   1ku8_CD_0

Peptides
      1ugw-B 1jac-H 1jot-B 1ku8-B

PartnerDomains

Dist Members Intf   Alignment
      1ugw_AB_0     T     V       I       V     G       P     W       G       A
      1jac_GH_0     T     V       I       V     G       S     W       G       A
      1jot_AB_0           I       I       V     G       P     W       G
      1ku8_AB_0     T     V       I       V     G       P     W       G       A

Dist Members ResidueID Alignment
      1ugw_AB_0   9     10    11          12    13      14    15      16      17
      1jac_GH_0   9     10    11          12    13      14    15      16      17
      1jot_AB_0         10    11          12    13      14    15      16
      1ku8_AB_0   9     10    11          12    13      14    15      16      17

Alignment Occupancy       0.75    1       1     1       1     1       1       1     0.75
Gap in betw Columns       0       0       0     0       0     0       0       0

SLIM   RegEx        T[VI]IVG[PS]WGA
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 20.1370655972691
SLIM   I=181997 Im=3783 Id=3 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 T(3.712) S(0.712) P(0.712) G(0.712) D(0.712) N(-0.28) E(-0.28) Q(-0.28) H(-0.28) K(-0.28) C(-1.28) A(-1.28)
R(-1.28) M(-1.28) I(-2.28) L(-2.28) V(-2.28) F(-2.28) Y(-2.28) W(-3.28)
Gap (0)
Pos 1 V(3.728) I(3.357) L(1.357) M(1) A(-0.17) F(-0.64) C(-1) Y(-1) S(-2) T(-2) P(-2.17) E(-2.17) Q(-2.17) K(-2.17)
N(-3) D(-3) H(-3) R(-3) W(-3) G(-3.17)
Gap (0)
Pos 2 I(4) L(2) M(1) V(1) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) P(-3) N(-3) D(-3) E(-3) Q(-3) H(-3) R(-3) K(-3) W(-3)
G(-4)
Gap (0)
Pos 3 V(4) I(3) M(1) L(1) A(0) C(-1) F(-1) Y(-1) S(-2) T(-2) P(-2) E(-2) Q(-2) K(-2) G(-3) N(-3) D(-3) H(-3) R(-3)
W(-3)
Gap (0)
Pos 4 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 5 P(6.712) S(2.633) T(1) A(-0.04) N(-0.04) D(-0.64) E(-0.64) Q(-0.64) K(-0.64) G(-1.04) H(-1.64) R(-1.64) M(-
1.64) V(-2) C(-2.04) I(-2.64) L(-2.64) Y(-2.64) F(-3.04) W(-3.64)
Gap (0)
Pos 6 W(11) Y(2) F(1) M(-1) C(-2) G(-2) Q(-2) H(-2) L(-2) S(-3) T(-3) A(-3) E(-3) R(-3) K(-3) I(-3) V(-3) P(-4) N(-
4) D(-4)
Gap (0)
Pos 7 G(6) T(1) S(0) A(0) V(0) D(-1) P(-2) N(-2) E(-2) Q(-2) H(-2) R(-2) K(-2) W(-2) C(-3) M(-3) F(-3) Y(-3) I(-4)
L(-4)
Gap (0)
Pos 8 A(3.712) S(0.712) C(-0.28) G(-0.28) T(-1.28) P(-1.28) N(-1.28) E(-1.28) Q(-1.28) R(-1.28) K(-1.28) M(-1.28)
I(-1.28) L(-1.28) D(-2.28) H(-2.28) V(-2.28) F(-2.28) Y(-2.28) W(-3.28)
//

===============================
 SLIM 186
===============================
ID           KH_1.clust.0.15.0
Center             2pqu_BA_0
AvSimToCtr 0.460
AvRMSDToCtr 1.171 A
Size         20
NumDistinct 8
FracDDI            0.25
FracPeptides       0
FracIntra    0.5
Species            HOMO SAPIENS (8)
Conservation       1

Members
      1dtj_AB_0 1dtj_CD_0 1dtj_BA_0 2ann_AA_0 2anr_AA_0 2ann_AA_1 2anr_AA_1 2axy_AB_0 2axy_CD_0 2axy_BA_0
      2axy_DC_0 2pqu_AB_0 2py9_AB_0 2py9_BA_0 2pqu_CD_0 2py9_CD_0 2pqu_DC_0 2py9_DC_0 2jzx_AA_1 2jzx_AA_0

Peptides

PartnerDomains
      KH_1 (2pqu_BA_0,2jzx_AA_0)
Dist Members Intf   Alignment
      2pqu_BA_0     T     I     R     L      L     H      E      E     I      I     F      F     A     I     D     L      E
      1dtj_AB_0           M           E                                                    P           Q           Q
      1dtj_CD_0     K     E     L     V      E                                      P      Q           Q
      1dtj_BA_0                                                                            P     A     Q           Q
      2ann_AA_0           V     K     I      I                         V            R      V     E     I           I      Q
      2anr_AA_0           V     K     I      I                         V            R      V     E     I     Q     I      Q
      2ann_AA_1           L     K     V      L                         V                   H                       I      R
      2jzx_AA_0     T     L     R     L      V     P             E     A      I     I      V     K     C

Dist Members ResidueID Alignment
      2pqu_BA_0   15    16    17      18     19    21     24     56    58     68    69     72    73    76    77    79
      80
      1dtj_AB_0         4             6                                                    62          66          69
      1dtj_CD_0   5     6     7       8      9                                      62     66          69
      1dtj_BA_0                                                                            62    63    66          69
      2ann_AA_0         106   107     108    109                       152          163    166   167   170         173
      174
      2anr_AA_0         106   107     108    109                       152          163    166   167   170   171   173
      174
      2ann_AA_1         8     9       10     11                        55                  69                      76
      77
      2jzx_AA_0   99    100   101     102    103   105           143   145    155   156    159   160   163

Alignment Occupancy       0.375 0.875 0.75   0.875 0.75   0.25   0.125 0.25   0.625 0.25   0.625 1     0.625 0.875 0.25
      0.75 0.5
Gap in betw Columns       0     0     0      34,43 10     2,3    0     2      2     0

SLIM   RegEx        [RFIP].{2,3}[VPHFQ][AEK]..[QIC]..[IQL][QRE]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 20.2872802409367
SLIM   I=181997 Im=9538 Id=1301 Idm=73
SLIM   PSSM p-value 0.0403694753737537

PSSM Listing
Pos 0 P(4.920) F(3.923) R(3.614) I(1.941) Y(0.954) K(0.644) L(0.084) Q(-0.30) M(-0.55) T(-0.76) V(-0.87) W(-1.01)
H(-1.14) N(-1.17) E(-1.17) A(-1.60) S(-1.76) D(-2.38) C(-2.50) G(-2.82)
Gap (2,3)
Pos 1 H(5.921) P(5.614) F(3.924) V(3.024) Q(2.935) I(2.038) Y(1.289) M(0.277) E(0.180) L(0.165) T(-0.00) N(-0.54)
D(-0.54) A(-0.60) K(-0.62) R(-0.64) W(-0.92) S(-1.10) C(-1.71) G(-2.37)
Gap (0)
Pos 2 E(3.625) K(2.961) A(2.623) Q(0.823) D(0.656) R(0.235) S(0.053) T(-0.76) N(-0.76) H(-1.10) G(-1.20) C(-1.34)
P(-1.47) M(-1.76) L(-2.10) I(-2.20) Y(-2.47) V(-2.94) F(-2.94) W(-3.47)
Gap (2)
Pos 3 C(6.920) Q(4.019) I(3.022) L(1.053) E(1.026) M(0.364) V(0.109) R(0.043) K(0.043) S(-0.75) T(-0.75) F(-0.89)
A(-0.91) N(-0.91) D(-0.91) H(-0.91) Y(-1.22) P(-1.81) W(-2.44) G(-2.75)
Gap (2)
Pos 4 Q(3.614) I(3.063) L(2.264) V(1.270) M(0.785) E(0.627) R(-0.33) K(-0.33) F(-0.66) S(-1.14) T(-1.14) A(-1.28)
Y(-1.28) N(-1.29) H(-1.29) D(-1.30) C(-1.62) P(-2.14) W(-2.66) G(-3.14)
Gap (0)
Pos 5 Q(3.647) E(3.021) R(2.963) K(0.664) D(0.174) N(-0.69) H(-0.69) S(-0.86) T(-0.86) M(-1.16) A(-1.69) P(-1.86)
Y(-2.07) G(-2.69) L(-2.86) V(-3.07) W(-3.07) I(-3.69) F(-3.69) C(-3.86)
//

===============================
 SLIM 187
===============================
ID           KR.clust.0.2.2
Center             1i3k_AB_2
AvSimToCtr 0.608
AvRMSDToCtr 0.663 A
Size         23
NumDistinct 4
FracDDI            0.75
FracPeptides       0
FracIntra    0
Species            HOMO SAPIENS (1), ESCHERICHIA COLI (1), HELICOBACTER PYLORI (1), TRYPANOSOMA BRUCEI (1)
Conservation       0.25

Members
      1ek6_AB_2 1hzj_AB_2 1ek6_BA_2 1hzj_BA_2 1i3l_AB_2 1i3m_AB_2 1i3n_AB_2 1i3k_BA_2 1i3l_BA_2 1i3m_BA_2
      1i3n_BA_2 1gy8_AB_2 1gy8_CD_2 1gy8_DC_2 1gy8_BA_2 2cnb_AB_2 2cnb_BA_2 2cnb_DC_2 2cnb_CD_2 2udp_AB_2
      2udp_BA_2 2gn8_AB_2 2gn8_BA_2

Peptides

PartnerDomains
      KR (1i3k_AB_2,1gy8_AB_2,2udp_AB_2)
      adh_short (1i3k_AB_2,1gy8_AB_2,2udp_AB_2)
      Epimerase (1i3k_AB_2,1gy8_AB_2,2udp_AB_2)
      NAD_binding_4 (1i3k_AB_2,1gy8_AB_2)
      3Beta_HSD (2udp_AB_2)

Dist Members Intf   Alignment
      1i3k_AB_2     L     D     Y   R     L       T   I     L     E     K     E     M     D     L     A
      1gy8_AB_2     L           Y   D     V       V   L     L     Q     L     R     M     D     C     A
      2udp_AB_2     L           Y   D     V       N   L     I     S     R     Q     I     D     L     A
      2gn8_AB_2                 L         I                                         C     K     L     S
Dist Members ResidueID Alignment
      1i3k_AB_2   102   103   105       106   109    110   113    116    117    120   166   167    170   171   174
      1gy8_AB_2   112         115       116   119    120   123    126    127    130   182   183    186   187   190
      2udp_AB_2   94          97        98    101    102   105    108    109    112   158   159    162   163   166
      2gn8_AB_2               101             104                                           147    150   151   154

Alignment Occupancy       0.75   0.25   1     0.75   1     0.75   0.75   0.75   0.75 0.75   0.75   1     1     1     1
Gap in betw Columns       2      0      2     0      2     2      0      2      45,47 0     2      0     2

SLIM   RegEx        L..[YL][DR]..[VIL][TNV]..[LI]..[LI][SQE]..[RKL]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 21.7540316611757
SLIM   I=181997 Im=7102 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 L(3.712) V(2.712) M(1.712) I(1.712) F(-0.28) C(-1.28) A(-1.28) Y(-1.28)         S(-2.28) T(-2.28) Q(-2.28) R(-2.28)
K(-2.28) W(-2.28) P(-3.28) N(-3.28) E(-3.28) H(-3.28) G(-4.28) D(-4.28)
Gap (2)
Pos 1 Y(6.712) F(2.728) L(2.633) W(1.718) H(1.714) V(1.667) M(0.752) I(0.752)         Q(-1.17) C(-1.64) A(-1.64) S(-2) T(-2)
R(-2) K(-2) N(-2.17) E(-2.17) P(-3) G(-3.17) D(-3.17)
Gap (0)
Pos 2 D(5.307) R(3.615) E(1.372) K(0.708) N(0.475) T(0.372) Q(0.165) S(-0.52)         H(-0.83) P(-1.52) G(-1.52) A(-1.83)
M(-2.14) Y(-2.83) L(-3.14) C(-3.28) I(-3.28) V(-3.28) F(-3.28) W(-3.83)
Gap (2)
Pos 3 V(3.496) I(3.240) L(2.824) M(1.357) A(-0.37) F(-0.37) C(-1) Y(-1) S(-2)         T(-2) Q(-2.17) K(-2.17) P(-2.37) E(-
2.37) R(-2.64) W(-2.64) N(-3) H(-3) D(-3.17) G(-3.37)
Gap (0)
Pos 4 N(4.616) T(2.634) V(2.617) I(1.622) S(0.331) D(0.315) G(-0.05) M(-0.21)         P(-0.29) L(-0.32) E(-0.62) Q(-0.62)
K(-0.62) A(-0.97) H(-1.03) R(-1.03) C(-1.62) Y(-1.83) F(-1.97) W(-3.52)
Gap (2)
Pos 5 L(3.372) I(2.853) V(2.372) M(1.475) F(-0.28) C(-1.28) A(-1.28) Y(-1.28)         S(-2.28) T(-2.28) Q(-2.52) R(-2.52)
K(-2.52) W(-2.52) P(-3.28) N(-3.28) E(-3.28) H(-3.28) D(-3.83) G(-4.28)
Gap (2)
Pos 6 L(3.372) I(2.853) V(2.372) M(1.475) F(-0.28) C(-1.28) A(-1.28) Y(-1.28)         S(-2.28) T(-2.28) Q(-2.52) R(-2.52)
K(-2.52) W(-2.52) P(-3.28) N(-3.28) E(-3.28) H(-3.28) D(-3.83) G(-4.28)
Gap (0)
Pos 7 E(3.668) Q(3.668) S(2.649) D(0.853) K(0.475) T(0.165) N(0.165) R(0.021)         A(-0.14) H(-0.52) M(-0.97) G(-1.14)
P(-1.28) Y(-1.83) C(-2.21) L(-2.52) V(-2.52) I(-2.83) F(-2.83) W(-2.83)
Gap (2)
Pos 8 R(3.663) K(3.663) L(2.618) V(1.618) M(0.708) I(0.627) Q(0.331) E(-0.05)         N(-0.66) S(-0.97) T(-0.97) H(-1.03)
A(-1.28) F(-1.29) Y(-1.83) P(-1.97) D(-2.03) C(-2.14) G(-2.62) W(-2.83)
//

===============================
 SLIM 188
===============================
ID           KR.clust.0.2.4
Center             2pzl_BA_2
AvSimToCtr 0.510
AvRMSDToCtr 0.826 A
Size         11
NumDistinct 4
FracDDI            0.75
FracPeptides       0
FracIntra    0
Species            PSEUDOMONAS AERUGINOSA (2), BORDETELLA BRONCHISEPTICA (2)
Conservation       0.5

Members
      1rpn_AB_2 1rpn_BA_2 1rpn_CD_2 1rpn_DC_2 2pzk_AB_2 2pzl_AB_2 2pzm_AB_2 2pzk_BA_2 2pzm_BA_2 2q1w_BC_3
      2q1w_CB_3

Peptides

PartnerDomains
      KR (2pzl_BA_2,1rpn_AB_2,2q1w_BC_3)
      adh_short (2pzl_BA_2,1rpn_AB_2,2q1w_BC_3)
      Epimerase (2pzl_BA_2,1rpn_AB_2,2q1w_BC_3)
      NAD_binding_4 (2pzl_BA_2,2q1w_BC_3)
      RmlD_sub_bind (1rpn_AB_2,2q1w_BC_3)

Dist Members Intf   Alignment
      2pzl_BA_2     D     W      A   A    A       V    Q     I     A     K       P     T      F      M     S
      1rpn_AB_2     W     P      V   G    V            L     T           E
      1rpn_CD_2           P      V   G    V            L     T           E                           N     Y
      2q1w_BC_3     D     W      Y   T    L       C    V     S     V     Q                    Y      Y     S

Dist Members ResidueID Alignment
      2pzl_BA_2   83    85    86     89   90      93   94    97    100   101     133   134    150    153   154
      1rpn_AB_2   91    94    95     98   99           103   106         110
      1rpn_CD_2         94    95     98   99           103   106         110                         163   164
      2q1w_BC_3   84    86    87     90   91      94   95    98    101   102                  153    156   157

Alignment Occupancy       0.75   1   1    1       1    0.5   1     1     0.5     1     0.25   0.25   0.5   0.75   0.75
Gap in betw Columns       1,2    0   2    0       2    0     2     2     0       48,50 2      0

SLIM RegEx        [DW].{1,2}[WP][VAY]..[GAT][VAL]..[CV][LQV]..[TSI]..[AV][EQK]
SLIM Coverage           1
SLIM PSSM Match Cutoff 26.9265450425306
SLIM I=181997 Im=3684 Id=0 Idm=0
SLIM PSSM p-value 1

PSSM Listing
Pos 0 W(9.613) D(5.306) E(1.310) Y(0.627) T(0.315) N(0.310) F(-0.35) Q(-0.62) S(-0.66) G(-1.52)   H(-1.52) K(-1.62)
P(-1.66) M(-2.14) A(-2.52) R(-2.52) C(-2.83) L(-3.14) I(-3.28) V(-3.28)
Gap (1,2)
Pos 1 W(10.30) P(6.306) Y(1.313) T(0.325) F(0.313) Q(-1.37) M(-1.37) S(-1.56) A(-1.56) E(-1.56)   K(-1.56) N(-1.64)
D(-1.64) G(-2) H(-2) C(-2.37) R(-2.37) L(-2.37) V(-2.37) I(-3)
Gap (0)
Pos 2 Y(5.614) V(3.311) A(2.652) I(2.325) F(1.656) H(0.645) W(0.633) M(0.433) L(0.433) S(-0.24)   C(-0.75) G(-1.24)
Q(-1.37) T(-1.64) E(-1.64) K(-1.64) P(-1.75) N(-1.89) R(-1.89) D(-2.64)
Gap (2)
Pos 3 G(5.311) T(2.714) A(2.656) S(0.620) D(-0.10) P(-0.17) V(-0.56) N(-0.89) E(-0.89) Q(-0.89)   K(-0.89) C(-1.00)
H(-1.04) R(-1.37) M(-1.56) I(-2.00) L(-2.00) F(-2.37) Y(-2.37) W(-2.37)
Gap (0)
Pos 4 V(3.476) L(2.714) A(2.656) I(2.483) M(1.193) S(-0.24) C(-0.64) F(-0.75) Y(-1.17) G(-1.27)   T(-1.64) Q(-1.64)
K(-1.64) P(-1.75) E(-1.75) R(-1.89) N(-2.04) H(-2.64) W(-2.64) D(-2.75)
Gap (2)
Pos 5 C(7.613) V(2.620) I(1.631) M(-0.25) L(-0.25) A(-0.69) S(-2.07) T(-2.07) F(-2.07) Y(-2.07)   P(-3.07) Q(-3.07)
K(-3.07) W(-3.07) E(-3.25) G(-3.69) N(-3.69) D(-3.69) H(-3.69) R(-3.69)
Gap (0)
Pos 6 Q(3.616) L(3.332) V(3.166) I(2.166) M(1.531) E(0.645) K(-0.24) R(-0.27) F(-0.50) A(-0.64)   Y(-1) S(-1.04) T(-
1.04) C(-1.24) N(-1.24) H(-1.24) D(-1.30) P(-1.89) W(-2.17) G(-2.89)
Gap (2)
Pos 7 T(3.332) S(2.710) I(2.621) L(0.667) D(0.483) G(0.478) P(0.380) N(0.175) A(-0.04) M(-0.04)   V(-0.24) E(-0.27)
Q(-0.27) K(-0.27) H(-0.50) C(-1) F(-1.04) R(-1.24) Y(-1.64) W(-3)
Gap (2)
Pos 8 A(2.631) V(2.616) I(1.631) M(-0.25) L(-0.25) S(-0.33) C(-1.07) G(-1.33) T(-2.07) P(-2.07)   E(-2.07) Q(-2.07)
K(-2.07) F(-2.07) Y(-2.07) N(-2.25) R(-2.25) D(-3.07) H(-3.07) W(-3.69)
Gap (0)
Pos 9 E(4.340) Q(3.725) K(3.667) D(1.395) R(1.107) S(0) T(0) N(0) H(-0.17) M(-0.89) P(-1) A(-1)   Y(-1.64) G(-2) L(-
2.37) V(-2.64) W(-2.64) I(-3) F(-3) C(-3.37)
//

===============================
 SLIM 189
===============================
ID          KaiC.clust.0.15.1
Center            2gbl_EF_1
AvSimToCtr 0.555
AvRMSDToCtr 1.021 A
Size        29
NumDistinct 7
FracDDI           0
FracPeptides        0
FracIntra    0
Species             PYROCOCCUS HORIKOSHII (6)
Conservation        1

Members
      1tf7_AB_1 1u9i_AB_1 2gbl_AB_1 3dvl_AB_1 1tf7_CD_1 1u9i_CD_1 2gbl_CD_1 3dvl_CD_1 1tf7_EF_1 1u9i_EF_1
      3dvl_EF_1 1tf7_BC_1 1u9i_BC_1 2gbl_BC_1 3dvl_BC_1 1tf7_DE_1 1u9i_DE_1 2gbl_DE_1 3dvl_DE_1 2gbl_FA_1
      3dvl_FA_1 1tf7_FA_1 1u9i_FA_1 2dr3_AB_0 2dr3_FA_0 2dr3_BC_0 2dr3_DE_0 2dr3_CD_0 2dr3_EF_0

Peptides

PartnerDomains

Dist Members Intf   Alignment
      2gbl_EF_1     A     I     R     S     S     V     R     R     F     R     A     R     K     Q     V     F       V
      D     R       G     T
      2dr3_AB_0           T     R                 A     R     S     L     Q                 K     R                   G
      D     R
      2dr3_FA_0                                                     R     S     L     Q     K
      2dr3_BC_0                                                     R     S     L     Q     K     R                   G
      2dr3_DE_0                       A                 R     S     L           Q           K     R           P
      R             G
      2dr3_CD_0                                         A           S           L     Q     K     R           P
      2dr3_EF_0                                               A     R     S     L     Q     K     R
      D     R             G

Dist Members ResidueID Alignment
      2gbl_EF_1   17    18    40      157   158   159   161   162   165   166   169   170   172   173   196   199
      200   202   226   227   228
      2dr3_AB_0         2     23                  146   149   150   153   154               156   157
      183   189   213
      2dr3_FA_0                                                     149   150   153   154   156
      2dr3_BC_0                                                     149   150   153   154   156   157
      183
      2dr3_DE_0                       146               149   150   153         154         156   157         182
      213         214
      2dr3_CD_0                                         146         150         153   154   156   157         182
      2dr3_EF_0                                               146   149   150   153   154   156   157
      189   213         214

Alignment Occupancy     0.142 0.285 0.285 0.285 0.142 0.285 0.571 0.571 1       0.714 0.857 0.714 1     0.857 0.142
      0.428 0.428 0.571 0.428 0.285 0.285
Gap in betw Columns     0     2     0     2     0     1     0     26,49
SLIM   RegEx        [RA][SAR]..[RLSF][SQR]..[LAQ][QR].K[RQ]
SLIM   Coverage           0.857142857142857
SLIM   PSSM Match Cutoff 19.0281463466082
SLIM   I=181997 Im=15206 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 R(4.153) A(2.074) K(1.169) Q(0.196) S(-0.60) N(-0.73) E(-0.73) H(-0.80) T(-1.55) M(-1.55) G(-1.60) C(-1.80)
P(-2.20) L(-2.20) D(-2.55) Y(-2.55) I(-2.60) V(-3.20) F(-3.20) W(-3.55)
Gap (0)
Pos 1 R(3.061) S(2.775) A(2.155) K(0.332) N(-0.02) T(-0.12) Q(-0.31) E(-0.73) G(-0.80) D(-1.12) H(-1.31) C(-1.36)
M(-1.55) P(-1.73) L(-2.20) I(-2.31) Y(-2.55) V(-2.73) F(-2.73) W(-3.55)
Gap (2)
Pos 2 R(4.154) F(4.059) L(2.761) S(2.081) V(1.763) K(1.210) Y(1.115) M(0.901) I(0.830) Q(0.302) N(-0.17) A(-0.39)
T(-0.50) E(-0.52) H(-0.60) W(-0.78) G(-1.54) D(-1.54) C(-1.61) P(-2.06)
Gap (0)
Pos 3 S(3.161) Q(3.091) R(3.079) K(0.627) E(0.486) N(0.372) T(0.307) A(0.239) D(-0.52) G(-0.76) H(-0.81) M(-1.04)
P(-1.47) C(-1.76) Y(-2.04) L(-2.33) V(-2.47) I(-2.62) F(-2.62) W(-3.04)
Gap (2)
Pos 4 L(3.442) Q(3.060) V(2.443) A(2.087) M(1.485) I(1.454) E(0.128) S(-0.49) F(-0.51) R(-0.65) K(-0.65) C(-1.02)
Y(-1.26) T(-1.29) N(-1.49) H(-1.65) G(-1.75) D(-1.75) P(-2.01) W(-2.26)
Gap (0)
Pos 5 Q(4.444) R(3.124) E(1.473) K(0.958) N(-0.33) H(-0.33) S(-0.47) T(-0.47) M(-0.47) D(-0.52) A(-1.33) P(-1.47)
Y(-1.47) G(-2.33) L(-2.33) V(-2.47) W(-2.47) C(-3.33) I(-3.33) F(-3.33)
Gap (1)
Pos 6 K(5) R(2) E(1) Q(1) S(0) T(0) N(0) P(-1) A(-1) D(-1) H(-1) M(-1) G(-2) L(-2) Y(-2) C(-3) I(-3) V(-3) F(-3)
W(-3)
Gap (0)
Pos 7 R(4.667) Q(3.141) K(1.734) E(0.570) N(-0.15) H(-0.15) S(-0.90) T(-0.90) M(-0.90) A(-1.15) D(-1.42) P(-1.90)
Y(-1.90) G(-2.15) L(-2.15) V(-2.90) W(-2.90) C(-3.15) I(-3.15) F(-3.15)
//

===============================
 SLIM 190
===============================
ID           Ketoacyl-synt_C.clust.0.3.0
Center             2byw_CD_1
AvSimToCtr 0.622
AvRMSDToCtr 0.690 A
Size         127
NumDistinct 12
FracDDI            0.916666666666667
FracPeptides       0
FracIntra    0
Species           HOMO SAPIENS (2), STAPHYLOCOCCUS AUREUS (2), MYCOBACTERIUM TUBERCULOSIS (2), THERMUS THERMOPHILUS
(1), STREPTOMYCES COELICOLOR (1), ARABIDOPSIS THALIANA (1), BARTONELLA HENSELAE (1), ESCHERICHIA COLI (1),
STREPTOCOCCUS PNEUMONIAE (1)
Conservation      0.166666666666667

Members
      1dd8_AB_1   1dd8_CD_1   1dd8_DC_1   1dd8_BA_1   1ek4_AB_1   1ek4_DC_1   1ek4_BA_1   1ek4_CD_1   1f91_AB_1   1f91_DC_1
      1f91_BA_1   1f91_CD_1   2bui_AB_1   2bui_BA_1   2byx_AB_1   2byx_CD_1   2byx_BA_1   2byz_AB_1   2bz3_AB_1   2byz_BA_1
      2bz3_BA_1   2byz_CD_1   2bz3_CD_1   2byw_AB_1   2byw_BA_1   2byy_BA_1   2byy_AB_1   2bui_DC_1   2byx_DC_1   2bz3_DC_1
      2byz_DC_1   2vb8_AB_1   2byw_DC_1   2bui_CD_1   2byy_DC_1   2byy_CD_1   1h4f_AB_1   2vb9_DC_1   2vb7_BA_1   2vba_BA_1
      2vb7_CD_1   2vba_CD_1   2vba_DC_1   2vb7_DC_1   2aq7_DC_1   2aqb_DC_1   2vb9_CD_1   2vb8_BA_1   2vb8_DC_1   2vb8_CD_1
      1h4f_BA_1   2buh_AB_1   2buh_BA_1   2buh_DC_1   2bz4_AB_1   2bz4_BA_1   2aq7_AB_1   2aqb_AB_1   2aq7_BA_1   2aqb_BA_1
      1fj8_AB_1   1fj8_CD_1   1fj8_BA_1   1fj8_DC_1   1fj4_AB_1   1fj4_CD_1   1fj4_BA_1   1fj4_DC_1   1g5x_AB_1   1g5x_CD_1
      1g5x_BA_1   1g5x_DC_1   2vb9_BA_1   1h4f_CD_1   1h4f_DC_1   2buh_CD_1   2aq7_CD_1   2aqb_CD_1   2bz4_DC_1   2vb7_AB_1
      2vba_AB_1   2vb9_AB_1   2bz4_CD_1   1j3n_AB_2   1j3n_BA_2   1w0i_AB_2   2ix4_AB_2   1w0i_BA_2   2ix4_BA_2   2gqd_AB_1
      2gqd_BA_1   3e60_AB_3   3e60_BA_3   2iwy_AB_1   2iwy_BA_1   2iwz_BA_1   2iwz_AB_1   1oxh_AB_2   1oxh_CD_2   1oxh_BA_2
      1oxh_DC_2   2rjt_AB_2   2rjt_BA_2   2rjt_CD_2   2rjt_DC_2   1tqy_AB_1   1tqy_GH_1   1tqy_EF_1   1tqy_CD_1   2gp6_AB_1
      2gp6_BA_1   2wgf_AB_2   2wgf_HG_2   2wgf_FE_2   2wgf_BA_2   2wgg_AB_2   2wgg_BA_2   2wgg_DC_2   2wgg_GH_2   2wgg_EF_2
      2wgg_HG_2   2wgg_CD_2   2wgg_FE_2   2wgf_CD_2   2wgf_DC_2   2wgf_EF_2   2wgf_GH_2

Peptides

PartnerDomains
      ketoacyl-synt
(2byw_CD_1,1j3n_AB_2,1w0i_AB_2,2gqd_AB_1,2gqd_BA_1,3e60_AB_3,2iwy_AB_1,2iwy_BA_1,1oxh_AB_2,1tqy_AB_1,2wgf_AB_2)
      Thiolase_N (2wgf_AB_2)
      Mit_gmP (3e60_AB_3)

Dist Members Intf Alignment
      2byw_CD_1   F     N         P       T     A       C     A       T       K     I       H     G       V       N     Y     K
      1j3n_AB_2                   E                     H     A       M       G     F       T     G       P       S     S     E
      1w0i_AB_2   A               E       P             H     S       M       G     F       Q     G       P       N     H     D
      2gqd_AB_1                   D       P     G       Q     S       I       G     A       K     G       P       N
      2gqd_BA_1                   D       P             Q     S       I       G     A       K     G       P       N           D
      3e60_AB_3                   I       P             Y     S       I       G     L       R     G       P       N     H     D
      2iwy_AB_1                   V       P             Q     S       I       K     L       K     G       P       N     H     D
      2iwy_BA_1                   V             G       Q     S       I       K     L       K     G       P       N     H     D
      1oxh_AB_2                   D                     N     A       M       G     A       N     G       V       C     K     F
      1tqy_AB_1         D         Y       F     G       Q     S       I       G     M       R     G       P       S
      2gp6_AB_1                           Q                   G       L       H     A       K     A               V     M
      2wgf_AB_2                   D             A       V     G       L       G     A       R     A               V     M     D

Dist Members ResidueID Alignment
      2byw_CD_1   67    95    97          135   144     145   147     148     151   152     153   154     155     156   157   181
      1j3n_AB_2               96                        143   145     146     149   150     151   152     153     154   155   179
        1w0i_AB_2   114         144   181         191   193   194   197   198   199   200   201   202   203   227
        2gqd_AB_1               100   137   146   147   149   150   153   154   155   156   157   158
        2gqd_BA_1               100   137         147   149   150   153   154   155   156   157   158         183
        3e60_AB_3               105   142         152   154   155   158   159   160   161   162   163   164   188
        2iwy_AB_1               144   181         191   193   194   197   198   199   200   201   202   203   227
        2iwy_BA_1               144         190   191   193   194   197   198   199   200   201   202   203   227
        1oxh_AB_2               99                146   148   149   152   153   154   155   156   157   158   182
        1tqy_AB_1         95    96    133   142   143   145   146   149   150   151   152   153   154
        2gp6_AB_1                     142               154   155   158   159   160   161         163   164
        2wgf_AB_2               106         152   153   155   156   159   160   161   162         164   165   189

Alignment Occupancy       0.166 0.166 0.916 0.666 0.416 0.916 1     1     1     1     1     1     0.833 1     0.75
      0.75
Gap in betw Columns       36,37 9     1     0     2     0     0     0     0     0     0     23

SLIM   RegEx        [QHNCYV].[SAG][IMLT]..[GKH][ALFMI][KRHQTN][GA][PV][NSVC][HMSKY]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 27.7226182438036
SLIM   I=181997 Im=6171 Id=19 Idm=1
SLIM   PSSM p-value 0.346269836907105

PSSM Listing
Pos 0 C(6.515) H(6.210) Y(4.530) Q(4.129) N(3.541) V(1.546) E(1.209) F(0.588)   I(0.570) R(0.338) K(0.265) D(0.103)
S(-0.27) M(-0.30) T(-0.32) W(-0.34) A(-1.00) L(-1.03) P(-1.57) G(-1.74)
Gap (1)
Pos 1 G(4.220) S(3.487) A(2.734) T(0.756) N(0.530) E(-0.35) Q(-0.35) K(-0.35)   D(-0.38) C(-0.74) P(-1.11) R(-1.11)
M(-1.15) V(-1.27) H(-1.30) I(-1.74) L(-1.74) F(-2.11) Y(-2.11) W(-2.74)
Gap (0)
Pos 2 M(3.681) I(3.374) L(2.684) V(1.558) T(1.554) F(-0.07) S(-0.89) Q(-0.96)   C(-1) A(-1) Y(-1.05) P(-1.22) D(-1.32)
G(-1.38) K(-1.50) R(-1.77) N(-1.89) E(-1.89) H(-1.89) W(-1.94)
Gap (2)
Pos 3 G(5.594) H(5.515) K(3.616) T(0.763) R(0.703) S(-0.05) E(-0.15) Q(-0.15)   A(-0.26) V(-0.37) Y(-0.38) N(-0.56)
D(-0.57) P(-1.64) M(-1.99) W(-2.17) F(-2.57) L(-2.99) C(-3) I(-3.54)
Gap (0)
Pos 4 F(4.215) A(3.132) L(2.721) M(2.692) I(1.937) V(1.682) Y(1.268) S(0.207)   C(-0.52) W(-0.61) G(-0.83) Q(-1.26)
T(-1.37) R(-1.46) K(-1.46) N(-1.66) E(-1.66) P(-1.69) H(-1.92) D(-2.55)
Gap (0)
Pos 5 H(5.517) K(4.160) R(3.703) N(3.546) Q(2.669) T(1.669) E(0.810) S(0.072)   D(-0.05) Y(-0.27) P(-0.76) G(-0.86)
M(-0.96) A(-1.11) L(-2.11) F(-2.48) C(-2.57) V(-2.64) W(-2.78) I(-2.86)
Gap (0)
Pos 6 G(5.818) A(2.295) T(0.844) S(0.251) V(-0.15) D(-1.11) C(-1.56) P(-1.74)   N(-1.74) E(-1.74) Q(-1.74) R(-1.74)
K(-1.74) H(-2) W(-2.11) M(-2.27) I(-2.56) L(-2.56) F(-2.74) Y(-2.74)
Gap (0)
Pos 7 P(6.594) V(2.218) I(1.218) T(0.606) M(-0.61) L(-0.72) A(-0.88) S(-1.31)   E(-1.31) Q(-1.31) K(-1.31) N(-1.37)
D(-1.37) G(-2.31) H(-2.31) R(-2.31) C(-2.35) Y(-2.35) F(-2.61) W(-3.88)
Gap (0)
Pos 8 C(6.515) N(5.462) S(2.373) V(2.217) I(1.232) D(0.568) T(0.085) A(-0.24) Q(-0.25) K(-0.25) E(-0.25) G(-0.27)
R(-0.41) M(-0.47) L(-0.62) H(-1.24) Y(-1.74) P(-1.78) F(-2.08) W(-3.25)
Gap (0)
Pos 9 H(6.902) Y(4.542) M(3.213) K(2.537) S(1.574) F(0.682) L(0.263) N(0.222) R(0.051) D(0.032) Q(-0.17) W(-0.31)
T(-0.33) E(-0.39) I(-0.66) A(-0.98) G(-1.88) P(-2.01) C(-2.08) V(-2.17)
//

===============================
 SLIM 191
===============================
ID           LSM.clust.0.3.0
Center             1h64_IJ_0
AvSimToCtr 0.521
AvRMSDToCtr 0.750 A
Size         204
NumDistinct 22
FracDDI            0.818181818181818
FracPeptides       0
FracIntra    0
Species            SULFOLOBUS SOLFATARICUS (5), SACCHAROMYCES CEREVISIAE (4), HOMO SAPIENS (3), PYROBACULUM
AEROPHILUM (2), CRYPTOSPORIDIUM PARVUM (1), ARCHAEOGLOBUS FULGIDUS (1), PYROCOCCUS ABYSSI (1), METHANOBACTERIUM
THERMOAUTOTROPHICUM (1)
Conservation       0.277777777777778

Members
      1b34_AB_0   1h64_12_0   1h64_MN_0   1h64_WX_0   1h64_YZ_0   1h64_KL_0   1h64_EF_0   1h64_ST_0   1h64_2V_0   1h64_NH_0
      1h64_AB_0   1h64_OP_0   1h64_BC_0   1h64_PQ_0   1h64_UO_0   1h64_DE_0   1h64_JK_0   1h64_RS_0   1h64_GA_0   1h64_VW_0
      1h64_CD_0   1h64_QR_0   1h64_LM_0   1h64_FG_0   1h64_TU_0   1h64_HI_0   1h64_XY_0   1h64_Z1_0   1m8v_AB_0   1m8v_NH_0
      1m8v_GA_0   1m8v_JK_0   1m8v_BC_0   1m8v_HI_0   1m8v_KL_0   1m8v_DE_0   1m8v_LM_0   1m8v_IJ_0   1m8v_MN_0   1m8v_FG_0
      1m8v_CD_0   1m8v_EF_0   1i81_AB_0   1mgq_AB_0   1i81_FG_0   1mgq_FG_0   1i81_CD_0   1mgq_CD_0   1i81_BC_0   1mgq_BC_0
      1i81_DE_0   1mgq_DE_0   1i81_EF_0   1mgq_EF_0   1i81_GA_0   1mgq_GA_0   1jbm_BC_0   1jbm_EF_0   1jbm_CD_0   1jri_CD_0
      1jri_EF_0   1jri_JK_0   1jri_NH_0   1jri_GA_0   1jri_LM_0   1jri_HI_0   1jbm_AB_0   1jbm_DE_0   1jbm_FG_0   1loj_AB_0
      1loj_DE_0   1loj_LM_0   1loj_EF_0   1loj_MN_0   1loj_KL_0   1loj_BC_0   1loj_IJ_0   1loj_CD_0   1loj_HI_0   1loj_JK_0
      1loj_FG_0   1loj_GA_0   1loj_NH_0   1jri_AB_0   1jri_FG_0   1jri_BC_0   1jri_DE_0   1jri_KL_0   1jri_MN_0   1jri_IJ_0
      1jbm_GA_0   1i4k_12_0   1i4k_2V_0   1i4k_NH_0   1i4k_UO_0   1i4k_BC_0   1i4k_QR_0   1i4k_EF_0   1i4k_GA_0   1i4k_LM_0
      1i4k_IJ_0   1i4k_PQ_0   1i4k_XY_0   1i4k_HI_0   1i4k_Z1_0   1i5l_AB_0   1i5l_EF_0   1i5l_LM_0   1i5l_BC_0   1i5l_DE_0
      1i5l_GA_0   1i5l_FG_0   1i5l_HI_0   1i5l_JK_0   1i5l_MN_0   1i5l_KL_0   1i5l_NH_0   1i5l_IJ_0   1i5l_CD_0   1i4k_AB_0
      1i4k_FG_0   1i4k_VW_0   1i4k_JK_0   1i4k_KL_0   1i4k_CD_0   1i4k_DE_0   1i4k_MN_0   1i4k_WX_0   1i4k_OP_0   1i4k_RS_0
      1i4k_YZ_0   1i4k_ST_0   1i4k_TU_0   1th7_AB_0   1th7_KL_0   1th7_DE_0   1th7_NH_0   1th7_GA_0   1th7_BC_0   1th7_HI_0
      1th7_IJ_0   1th7_CD_0   1th7_JK_0   1th7_EF_0   1th7_LM_0   1th7_FG_0   1th7_MN_0   1i8f_AB_0   1i8f_EF_0   1lnx_AB_0
      1lnx_CD_0   1lnx_EF_0   1lnx_GA_0   1lnx_BC_0   1lnx_DE_0   1lnx_FG_0   1i8f_BC_0   1i8f_FG_0   1i8f_CD_0   1i8f_DE_0
      1i8f_GA_0   1d3b_AB_0   1d3b_EF_0   1d3b_GH_0   1d3b_CD_0   1d3b_IJ_0   1d3b_KL_0   1n9r_AB_0   1n9r_GA_0   1n9r_CD_0
      1n9r_DE_0   1n9r_FG_0   1n9r_BC_0   1n9r_EF_0   2fwk_BA_0   3bw1_BA_0   1m5q_1Z_0   1m5q_ML_0   1m5q_NM_0   1m5q_WV_0
      1m5q_21_0   1m5q_V2_0   1m5q_IH_0   1m5q_XW_0   1m5q_HN_0   1m5q_LK_0   1m5q_JI_0   1m5q_KJ_0   1m5q_YX_0   1m5q_ZY_0
      1m5q_AG_0 1m5q_GF_0 1m5q_ED_0 1m5q_UT_0 1m5q_DC_0 1m5q_QP_0 1m5q_RQ_0 1m5q_CB_0 1m5q_OU_0 1m5q_FE_0
      1m5q_SR_0 1m5q_TS_0 1m5q_BA_0 1m5q_PO_0

Peptides

PartnerDomains
      LSM
(1h64_IJ_0,1b34_AB_0,1i81_AB_0,1loj_NH_0,1i4k_12_0,1i4k_2V_0,1i4k_EF_0,1th7_KL_0,1th7_GA_0,1th7_CD_0,1i8f_AB_0,1i8f
_EF_0,1d3b_AB_0,1d3b_GH_0,1n9r_AB_0,1n9r_GA_0,1n9r_FG_0,3bw1_BA_0)

Dist Members Intf   Alignment
      1h64_IJ_0     L     F     F   N     V     M     Y     K     I     V     I     R     D     N
      1b34_AB_0                 L   N     V     E     I     K     M     F     L     R     D     S
      1i81_AB_0     L           F   N     V     E     L     T     V     L     I     R     D     N
      1loj_NH_0     L     R     F   N     V     E     L     T     V     L     I     R     D     N
      1i4k_12_0     L           F   N     V     E     V     S     V     V     I     R           T
      1i4k_2V_0     L           F   N     V     E     V     S     V     V     I     R     D     T
      1i4k_EF_0     L     R     F   N     V     E     V     S     V     V     I     R     D     T
      1th7_AB_0     L               N     V                 T     I     V     I     R           N
      1th7_KL_0     L               N     V     E           T     I     V     I     R     D     N
      1th7_DE_0     L           V   N     V           L     T     I     V     I     R     D     N
      1th7_GA_0     L           V   N     V     E           T     I     V     I     R     D     N
      1th7_CD_0     L           V   N     V     E     L     T     I     V     I     R     D     N
      1i8f_AB_0     L           I         L     E     R     T     M     V     V     R           N
      1i8f_EF_0     L           I         L     E     R     T     M     V     V     R     E     N
      1d3b_AB_0     L           F   N     I     E           L     V     L     L     R     E     N
      1d3b_GH_0     L     R     F   N     I     E           L     V     L     L     R     E     N
      1n9r_AB_0     L           Y   N                 L     E     I     F     I     R           N
      1n9r_GA_0     L           Y   N           E     L     E     I     F     I     R     N     N
      1n9r_FG_0     L           Y   N     Q     E     L     E     I     F     I     R     N     N
      2fwk_BA_0                 F         V           L     T     I     L     L     S           N
      3bw1_BA_0     L     R     L         V     E     C     M     V     F     I     R           T
      1m5q_1Z_0                     N     V           F     R           F                 R     Y

Dist Members ResidueID Alignment
      1h64_IJ_0   21    25    27    39    41    47    57    59    60    61    62    63    65    66
      1b34_AB_0               52    64    66    72    96    98    99    100   101   102   104   105
      1i81_AB_0   30          36    48    50    56    66    68    69    70    71    72    74    75
      1loj_NH_0   30    34    36    48    50    56    66    68    69    70    71    72    74    75
      1i4k_12_0   21          27    39    41    47    57    59    60    61    62    63          66
      1i4k_2V_0   21          27    39    41    47    57    59    60    61    62    63    65    66
      1i4k_EF_0   21    25    27    39    41    47    57    59    60    61    62    63    65    66
      1th7_AB_0   26                44    46                64    65    66    67    68          71
      1th7_KL_0   26                44    46    52          64    65    66    67    68    70    71
      1th7_DE_0   26          32    44    46          62    64    65    66    67    68    70    71
        1th7_GA_0   26          32    44    46    52          64    65    66    67    68    70    71
        1th7_CD_0   26          32    44    46    52    62    64    65    66    67    68    70    71
        1i8f_AB_0   28          34          48    54    63    65    66    67    68    69          72
        1i8f_EF_0   28          34          48    54    63    65    66    67    68    69    71    72
        1d3b_AB_0   21          27    39    41    47          69    70    71    72    73    75    76
        1d3b_GH_0   21    25    27    39    41    47          69    70    71    72    73    75    76
        1n9r_AB_0   31          38    50                68    70    71    72    73    74          77
        1n9r_GA_0   31          38    50          58    68    70    71    72    73    74    76    77
        1n9r_FG_0   31          38    50    52    58    68    70    71    72    73    74    76    77
        2fwk_BA_0               51          65          96    98    99    100   101   102         105
        3bw1_BA_0   20    24    26          40    46    63    65    66    67    68    69          72
        1m5q_1Z_0                     46    48          60    62          64                68    69

Alignment Occupancy       0.863 0.227 0.863 0.818 0.909 0.772 0.772 1     0.954 1     0.954 0.954 0.727 1
Gap in betw Columns       5,6   11    1     5     4,16 1      0     0     0     0     1     0

SLIM   RegEx        [LVRFCIY].[TSEKLMR][IVM][VFL][ILV][RS].[DENR][NTSY]
SLIM   Coverage           0.636363636363636
SLIM   PSSM Match Cutoff 22.1337458022186
SLIM   I=181997 Im=5060 Id=1427 Idm=138
SLIM   PSSM p-value 3.70544891893774e-36

PSSM Listing
Pos 0 C(5.909) Y(3.931) L(3.027) F(2.981) V(2.703) R(2.607) I(2.078) M(1.191)   K(-0.28) W(-0.63) H(-0.74) A(-0.97)
Q(-1.08) E(-1.97) S(-1.99) T(-1.99) N(-2.04) P(-2.87) D(-3.35) G(-3.39)
Gap (1)
Pos 1 T(3.237) E(3.050) K(2.695) S(2.192) R(2.054) M(2.041) L(1.687) D(0.885)   Q(0.706) V(0.655) G(0.345) P(0.326)
N(0.103) I(-0.11) H(-0.31) A(-0.37) C(-1.28) F(-1.47) Y(-1.78) W(-2.63)
Gap (0)
Pos 2 I(3.480) M(3.111) V(3.049) L(1.677) F(-0.32) A(-0.54) C(-1.04) Y(-1.04)   Q(-1.56) S(-1.82) T(-1.82) K(-2.10)
R(-2.39) W(-2.39) P(-2.40) E(-2.40) N(-2.82) H(-2.82) D(-3.04) G(-3.40)
Gap (0)
Pos 3 F(4.704) V(3.464) L(2.641) I(2.484) Y(1.748) M(1.197) W(-0.22) A(-0.47)   C(-1.18) H(-1.99) S(-2) T(-2) Q(-2.18)
K(-2.18) E(-2.37) P(-2.47) R(-2.67) N(-3) G(-3.15) D(-3.15)
Gap (0)
Pos 4 I(3.698) L(2.722) V(2.348) M(1.236) F(-0.10) A(-0.89) C(-1.04) Y(-1.04)   S(-2.04) T(-2.04) Q(-2.64) K(-2.64)
R(-2.76) W(-2.76) P(-2.89) E(-2.89) N(-3.04) H(-3.04) D(-3.17) G(-3.89)
Gap (0)
Pos 5 R(4.904) K(1.911) S(1.035) Q(0.922) N(0.032) E(-0.04) H(-0.07) T(-0.78)   A(-0.78) M(-1.04) G(-1.78) D(-1.78)
P(-1.96) L(-2.04) Y(-2.04) C(-2.78) I(-2.96) V(-2.96) F(-2.96) W(-3.04)
Gap (1)
Pos 6 D(5.218) N(3.640) E(3.166) R(1.950) Q(0.516) T(0.391) K(-0.03) S(-0.15)   H(-0.96) G(-1.26) P(-1.44) A(-1.96)
M(-2.65) Y(-2.82) I(-3.31) V(-3.31) F(-3.31) C(-3.44) L(-3.65) W(-3.96)
Gap (0)
Pos 7 N(5.682) Y(3.911) T(2.378) S(1.601) D(0.923) G(0.238) F(-0.02) Q(-0.02) E(-0.04) K(-0.04) R(-0.20) H(-0.22)
P(-0.49) W(-1.02) A(-1.22) M(-1.61) C(-2.07) I(-2.48) L(-2.48) V(-2.48)
//

===============================
 SLIM 192
===============================
ID           Laminin_G_2.clust.0.15.2
Center             1qu0_BA_0
AvSimToCtr 0.488
AvRMSDToCtr 1.671 A
Size         6
NumDistinct 4
FracDDI            0.25
FracPeptides       0
FracIntra    0
Species            RATTUS NORVEGICUS (3), MUS MUSCULUS (1)
Conservation       0.75

Members
      1c4r_EB_0 2r1d_EB_0 2r1d_AF_0 1qu0_AB_0 1qu0_CD_0 1qu0_DC_0

Peptides

PartnerDomains
      Laminin_G_2 (1qu0_BA_0)

Dist Members Intf Alignment
      1qu0_BA_0   T     I       D      K      M      H      R      T      I      D      D      A      Q      S      P      L      T
      T
      1c4r_EB_0                                                    E      R                    Y             P      A
      2r1d_EB_0                                                                  S      E      R      Y      P      A
      2r1d_AF_0                                      A                                         R      Y      P      A

Dist Members ResidueID Alignment
      1qu0_BA_0   2970 2989 2990       2992   2994   2996   3003   3005   3007   3009   3043   3044   3045   3046   3047   3074
      3075 3076
      1c4r_EB_0                                                    196    197                  198           199    200
      2r1d_EB_0                                                                  118    150    151    152    153    154
      2r1d_AF_0                                      114                                       151    152    153    154

Alignment Occupancy     0.25    0.25   0.25   0.25   0.25   0.5    0.25   0.5    0.5    0.5    0.5    1      0.75   1      1
      0.25 0.25 0.25
Gap in betw Columns     8       0,1    1      31,33 0       0      0      0
SLIM   RegEx        [DE][RAY][YQ][PS][AP]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 19.7467317260458
SLIM   I=181997 Im=6473 Id=43 Idm=3
SLIM   PSSM p-value 0.130433516217606

PSSM Listing
Pos 0 D(4.631) E(3.662) Q(0.740) T(-0.07) N(-0.07) K(-0.25) S(-0.69) H(-1.07) R(-1.25) P(-1.69) A(-2.07) G(-2.07)
M(-3.07) Y(-3.07) I(-3.69) V(-3.69) F(-3.69) C(-4.07) L(-4.07) W(-4.07)
Gap (0)
Pos 1 Y(5.614) R(4.308) A(2.629) F(1.625) K(1.340) H(0.867) W(0.633) Q(0.433) S(-0.10) N(-0.46) E(-0.46) M(-1) G(-
1.10) T(-1.17) C(-1.17) L(-1.37) I(-1.56) P(-1.75) V(-1.89) D(-2.17)
Gap (0)
Pos 2 Y(6.307) Q(3.618) F(2.308) H(1.372) W(1.315) E(0.649) R(-0.29) K(-0.29) M(-0.83) S(-1.14) T(-1.14) N(-1.14)
D(-1.29) L(-1.52) V(-1.52) I(-1.62) A(-1.83) P(-2.14) C(-2.52) G(-2.83)
Gap (0)
Pos 3 P(6.712) S(2.633) T(1) A(-0.04) N(-0.04) D(-0.64) E(-0.64) Q(-0.64) K(-0.64) G(-1.04) H(-1.64) R(-1.64) M(-
1.64) V(-2) C(-2.04) I(-2.64) L(-2.64) Y(-2.64) F(-3.04) W(-3.64)
Gap (0)
Pos 4 P(5.614) A(3.714) S(0.756) T(-0.04) G(-0.24) C(-0.27) N(-1) E(-1) Q(-1) K(-1) R(-1.17) M(-1.17) I(-1.24) L(-
1.24) D(-1.64) H(-2) V(-2) Y(-2.17) F(-2.24) W(-3.17)
//

===============================
 SLIM 193
===============================
ID           Ldh_1_C.clust.0.15.3
Center             1pzh_BA_2
AvSimToCtr 0.543
AvRMSDToCtr 1.441 A
Size         22
NumDistinct 5
FracDDI            0
FracPeptides       0
FracIntra    0
Species            TOXOPLASMA GONDII (2), PLASMODIUM VIVAX (1), GEOBACILLUS STEAROTHERMOPHILUS (1)
Conservation       0.5

Members
      1ldb_AB_5 1ldb_BA_5 1ldb_CD_5 1ldb_DC_5 2ldb_AB_5 2ldb_BA_5 2ldb_CD_5 2ldb_DC_5 1pzf_AB_2 1pzf_BA_2
      1pzf_DC_2 1pzh_DC_2 1pzg_BA_2 1pzg_AB_2 1pzg_CD_2 1pzh_AB_2 1pzf_CD_2 1pzh_CD_2 1pzg_DC_2 1sov_AB_1
      1sov_BA_1 2aa3_DA_2

Peptides
PartnerDomains

Dist Members Intf Alignment
      1pzh_BA_2   P     A       L     V     Q      R     E    N
      1ldb_AB_5         M       N                  D     P
      2ldb_AB_5   M     K       N     N     G      D          K
      1sov_AB_1                       V     S      R     E    N
      2aa3_DA_2                             T      K     N    N

Dist Members ResidueID Alignment
      1pzh_BA_2   14    15    16      17    18     20    44   75
      1ldb_AB_5         15    18                   46    73
      2ldb_AB_5   15    16    17      18    20     46         74
      1sov_AB_1                       17    18     20    44   75
      2aa3_DA_2                             18     20    44   75

Alignment Occupancy       0.4   0.6   0.6   0.6    0.8   1    0.8   0.8
Gap in betw Columns       0,2   0     0,1   1,25   22,26 29

SLIM   RegEx        [AMK].{0,2}[NL][VN].{0,1}[SQTG]
SLIM   Coverage           0.8
SLIM   PSSM Match Cutoff 16.2785967530623
SLIM   I=181997 Im=7800 Id=70 Idm=7
SLIM   PSSM p-value 0.0201460727208951

PSSM Listing
Pos 0 K(3.395) M(3.395) A(2.403) R(0.485) L(0.456) S(-0.20) Q(-0.20) E(-0.43)   I(-0.46) T(-1.05) N(-1.20) C(-1.26)
G(-1.43) F(-1.43) P(-1.74) H(-2.05) Y(-2.05) D(-2.20) W(-2.36) V(-2.74)
Gap (0,2)
Pos 1 N(5.083) L(2.392) V(1.395) M(0.426) I(0.403) S(0.108) D(0.087) T(-0.85)   Q(-0.85) R(-0.85) K(-0.85) E(-0.89)
G(-0.90) F(-1.51) H(-1.85) A(-2.05) Y(-2.05) C(-2.36) P(-2.74) W(-3.36)
Gap (0)
Pos 2 N(4.390) V(3.084) I(2.084) M(0.108) L(0.092) S(-0.51) D(-0.57) A(-0.85)   T(-1.36) E(-1.36) Q(-1.36) K(-1.36)
G(-1.51) R(-1.51) Y(-1.74) C(-1.85) F(-1.85) H(-2.36) P(-2.51) W(-3.74)
Gap (0,1)
Pos 3 G(4.400) Q(3.404) T(2.502) S(2.473) E(0.644) D(0.017) N(-0.02) K(-0.02)   A(-0.11) R(-0.33) P(-0.33) H(-0.69)
M(-1.02) V(-1.26) C(-1.78) Y(-1.98) L(-2.46) F(-2.60) W(-2.60) I(-2.69)
//

===============================
 SLIM 194
===============================
ID          Ldh_1_C.clust.0.25.0
Center            2ewd_AB_1
AvSimToCtr 0.396
AvRMSDToCtr 1.247 A
Size         217
NumDistinct 46
FracDDI           0.434782608695652
FracPeptides      0
FracIntra    0
Species           THERMUS THERMOPHILUS (6), HOMO SAPIENS (6), CITRULLUS LANATUS (5), BURKHOLDERIA PSEUDOMALLEI
1710B (2), ESCHERICHIA COLI (2), TOXOPLASMA GONDII (2), CRYPTOSPORIDIUM PARVUM (2), SUS SCROFA (2), WEISSELLA
CONFUSA (2), SORGHUM BICOLOR (1), GEOBACILLUS STEAROTHERMOPHILUS (1), CHLOROFLEXUS AURANTIACUS (1), PLASMODIUM
VIVAX (1), HALOARCULA MARISMORTUI (1), LACTOBACILLUS PENTOSUS (1), PORPHYROMONAS GINGIVALIS ATCC 33277 (1),
CHLOROBIUM VIBRIOFORME (1), AEROPYRUM PERNIX (1)
Conservation      0.157894736842105

Members
      1bdm_AB_1   1bmd_AB_1   1bdm_BA_1   1bmd_BA_1   1iz9_AB_1   1iz9_BA_1   1wze_AB_1   1wze_BA_1   1wzi_AB_1   1wzi_BA_1
      1y7t_AB_1   2cvq_AB_1   1y7t_BA_1   2cvq_BA_1   3d5t_AB_1   3d5t_BA_1   3d5t_CD_1   3d5t_DC_1   7mdh_AB_1   7mdh_CD_1
      7mdh_BA_1   7mdh_DC_1   4mdh_AB_1   5mdh_AB_1   4mdh_BA_1   5mdh_BA_1   3fi9_AB_1   3fi9_BA_1   1ez4_AB_3   1ez4_CD_3
      1ez4_BA_3   1ez4_DC_3   1ldb_AC_5   1ldb_BD_5   1ldb_CA_5   1ldb_DB_5   2ldb_AC_5   2ldb_BD_5   2ldb_CA_5   2ldb_DB_5
      1ldn_AD_5   1ldn_GF_5   1ldn_FG_5   1ldn_EH_5   1ldn_CB_5   1ldn_DA_5   1ldn_HE_5   1ldn_BC_5   1i0z_AB_1   1t2f_AB_1
      1t2f_DC_1   1t2f_CD_1   1i0z_BA_1   1t2f_BA_1   1i10_AB_2   1i10_BA_2   1i10_FE_2   1i10_CD_2   1i10_HG_2   1i10_DC_2
      1i10_EF_2   9ldb_AB_1   9ldt_AB_1   9ldb_BA_1   9ldt_BA_1   1i10_GH_1   2ldx_AC_3   2ldx_BD_3   2ldx_CA_3   2ldx_DB_3
      1hyh_AC_2   1hyh_BD_2   1hyh_CA_2   1hyh_DB_2   1guz_AD_2   1guz_CB_2   1guz_BC_2   1guz_DA_2   1gv0_BA_4   1gv0_AB_2
      1gv1_AD_1   1gv1_BC_1   1gv1_DA_1   1gv1_CB_1   1uxg_AB_1   1uxh_AB_1   1uxg_BA_1   1uxh_BA_1   1uxi_AB_1   1uxi_BA_1
      3gvh_AB_3   3gvh_BA_4   3gvh_DC_4   3gvi_AD_4   3gvi_CB_4   3gvi_DA_4   3gvi_BC_4   3gvh_CD_4   2fm3_AB_1   2fn7_AB_1
      2ewd_BA_1   2fm3_BA_1   2fn7_BA_1   2fnz_BA_1   2frm_AB_1   2frm_BA_1   2frm_CD_1   2frm_DC_1   2fnz_AB_1   2hjr_AD_4
      2hjr_CB_4   2hjr_FH_4   2hjr_IL_4   2hjr_KJ_4   2hjr_GE_4   2hjr_BC_4   2hjr_DA_4   2hjr_EG_4   2hjr_LI_4   2hjr_HF_4
      2hjr_JK_4   1pzf_AC_2   1pzg_AC_2   1pzh_AC_2   1pzf_BD_2   1pzg_BD_2   1pzh_BD_2   1pzf_CA_2   1pzg_CA_2   1pzh_CA_2
      1pzf_DB_2   1pzg_DB_2   1pzh_DB_2   2a92_AC_2   2aa3_AC_2   2a92_CA_2   2aa3_CA_2   2a92_BD_2   2a92_DB_2   2aa3_BD_2
      2aa3_DB_2   2d4a_AD_4   2d4a_BC_3   2d4a_CB_3   2d4a_DA_3   2e37_AB_6   2e37_CD_6   2e37_GH_6   2e37_EF_5   2e37_BA_5
      2e37_DC_5   2e37_FE_6   2e37_HG_6   2v6m_AB_5   2v6m_BA_7   2v6m_CD_5   2v6m_DC_5   2v7p_AB_5   2v7p_BA_6   2v7p_DC_6
      2v7p_CD_5   2v6b_AB_3   2v6b_DC_1   2v6b_BA_1   2v6b_CD_1   1d3a_AB_1   1d3a_BA_1   2hlp_AB_1   2hlp_BA_1   1o6z_AB_1
      1o6z_BA_1   1o6z_CD_1   1o6z_DC_1   2j5k_CD_1   2j5q_CD_1   2j5r_CD_1   2j5k_BA_1   2j5q_BA_1   2j5r_BA_1   2j5k_DC_1
      2j5q_DC_1   2j5r_DC_1   2j5k_AB_1   2j5q_AB_1   2j5r_AB_1   1gt2_AB_1   1gt2_BA_1   1ib6_AB_4   1ib6_CD_4   1ib6_DC_4
      1ie3_AB_4   1ib6_BA_4   2pwz_CA_5   2pwz_EG_4   2pwz_GE_4   1ie3_BA_4   1ie3_CD_4   1ie3_DC_4   2pwz_AC_4   1mld_AB_1
      1mld_BA_1   1mld_CD_1   1mld_DC_1   2dfd_AB_2   2dfd_CD_2   2dfd_BA_2   2dfd_DC_2   1sev_AB_2   1sev_BA_2   1smk_BA_2
      1smk_EF_2   1smk_DC_2   1smk_GH_2   1smk_AB_2   1smk_FE_2   1smk_HG_2   1smk_CD_2

Peptides

PartnerDomains
      Ldh_1_N
(2ewd_AB_1,1guz_AD_2,1gv1_AD_1,1uxg_AB_1,3gvh_AB_3,2hjr_AD_4,1pzf_AC_2,1pzh_AC_2,2a92_AC_2,2d4a_AD_4,2e37_AB_6,2v7p
_AB_5,2v7p_BA_6,2v6b_AB_3,2v6b_BA_1,2v6b_CD_1,1d3a_AB_1,1ib6_AB_4,1ib6_DC_4,1mld_AB_1)
      F420_oxidored (1guz_AD_2,3gvh_AB_3,2hjr_AD_4,2d4a_AD_4)
      Pyr_redox (1pzf_AC_2,1pzh_AC_2,2a92_AC_2)
      3HCDH_N (2hjr_AD_4,2d4a_AD_4)
      DapB_N (1ib6_AB_4,1ib6_DC_4)
      Semialdhyde_dh (3gvh_AB_3)
      Glyco_hydro_4 (3gvh_AB_3)
      UDPG_MGDP_dh_N (2hjr_AD_4)
      ThiF (2v7p_AB_5)

Dist Members Intf   Alignment
      2ewd_AB_1     G     N     Y     E   G   I   Q   G   K   L   D   I   T   H   S   V   M
      S     T
      1bdm_AB_1                           K   A   E   G   V   M   E       E   D   C   A
      1wze_AB_1                 F         Q   A   E   G   V   M   E       E   D   C   A
      2cvq_AB_1                 F         K   A   E   G   V   M   E       E   D   C   A
      3d5t_AB_1                 F         A   A       G   V   M   E       D   D   C   A
      3d5t_BA_1                 F         A   A   K   G   V   M   E       D   D   C   A
      7mdh_AB_1                           Q   A   E   G   V   M   E   L   E   D   S   L
      4mdh_AB_1                           G   V   D   G   V   M   E   L   Q   D   C   A
      5mdh_BA_1                           G   V   D   G   V   M   E       Q   D   C
            P
      3fi9_AB_1     S     N     Q         V   G   E   G   V   E   E   I   R   H   C   G
      1ez4_AB_3     S     S     F         D   R   K   G   D   L   D   L   E   D   A   A   F
      A     P
      1ldb_AC_5     A     S     F         S   K   I   G   D   M   D   F   N   H       V   F
      2ldb_AC_5     A     S     F         S   K   I   G   D   M   D   F   N   H   G   V   F
      1i0z_AB_1     M           I         D   K   K   G   E   M   D   L   Q   H   G   L   F
      1t2f_AB_1     M     A     I         D   K   K   G   E   M   D   L   Q   H   G   L   F
      1i10_AB_2     M                     D   K   K   G   E   M   D   L   Q   H   G   L   F
            P
      1i10_BA_2     M     A     I         D   K   K   G   E   M   D   L   Q   H   G   L   F
            P
      2ldx_AC_3     M           I         D   K   R   G   E   L   D   L   Q   H       L
      1hyh_AC_2     A                     A   K       A   D   I   D   F   Q   D   A   A   N
      1hyh_CA_2     A                     A   K   K   A   D   I   D   F   Q   D   A   A   N
      1guz_AD_2     A     T     F     E   G   I   Q   G   K   L   D   M   Y   E   S   P   V
      F     D
      1gv1_AD_1     A     T     F     E   G   I   Q   G   K   L   D   M   Y   E   T   P   V
      F     D
      1uxg_AB_1     S     T     H     E   G   V   Q   G   K   L   D   L   Y   E   A   P   I
      F     D
      3gvh_AB_3     G     T     H     E   G   T   Q   G   K   L   D   I   A   E   S   P   V
      F     D
      2hjr_AD_4     S     T     L     E   G   V   Q   G   K   L   D   L   N   H   C       L
      S     P
      1pzf_AC_2     G     T     Y     K   G   M   E   G   K   L   D   L   S   H   V       V
      T     N
      1pzh_AC_2   G     T     Y    K    G    M    E    G    K    L    D    L    S    H    V    S    V
      T     N
      2a92_AC_2               T    K    N    M    Q    G    K    L    D    T    S    H    S    V    M
      S     N
      2d4a_AD_4   M           V    P    G    K    Q    G    E    L    D    L    A    H    A    A    E
      V     D
      2e37_AB_6   S     A     Y         K    L         A    H    E    D    I    L    H    A    P    F
      2v7p_AB_5   S     A     Y         K    L         A    H    E    D    I    L    H    A    P    F
            P
      2v7p_BA_6   S     A     Y         K    L         A    H    E    D    I    L    H    A    P    F
      H     P
      2v6b_AB_3   S     T     F                        A    E         D    I    A    H    A
      2v6b_BA_1   S     T     F                             E    E    D    I    A
      2v6b_CD_1   S     T     F                             E    E    D    I    A    H    A
      1d3a_AB_1   A     A     Y         D    D    V    G    Q    A    D    T    N    H    G    A
      S     N
      1ib6_AB_4                                        G    V    V    D    L    S    H         P
            A
      1ib6_DC_4               L                   P    G    V    V    D    L    S    H    I    P
            A
      1mld_AB_1   Q     P     L              H    P    G    V    A    D    L    S    H    I    E
            R
      2dfd_AB_2   Q           L              H    P    G    V    A    D    L    S    H    I    E
            K
      2dfd_DC_2   Q     P     L              H    P    G    V    A    D    L    S    H    I    E
            K
      1sev_AB_2                                   P    G    V    A    D    I    S    H         D
            G
      1sev_BA_2               M                   P    G    V    A    D    I    S    H         D
            G
      1smk_BA_2               M                   P    G    V    A    D    I    S    H    M    D
            G
      1smk_EF_2               M              N    P    G    V    A    D    I    S    H    M    D
            G
      1smk_CD_2   Q           M              N    P    G    V    A    D    I    S    H    M    D
            G

Dist Members ResidueID Alignment
      2ewd_AB_1   33    35    38   56   57   58   60   61   62   64   65   66   67   68   69   71
      72    74    75
      1bdm_AB_1                         47   48   50   51   52   54   55        57   58   59   60
      1wze_AB_1               21        47   48   50   51   52   54   55        57   58   59   60
      2cvq_AB_1               21        47   48   50   51   52   54   55        57   58   59   60
      3d5t_AB_1               23        49   50        53   54   56   57        59   60   61   62
      3d5t_BA_1               23        49   50   52   53   54   56   57        59   60   61   62
7mdh_AB_1                             90     91     93     94     95     97     98     99     100    101    102    103
4mdh_AB_1                             47     48     50     51     52     54     55     56     57     58     59     60
5mdh_BA_1                             47     48     50     51     52     54     55            57     58     59
      62
3fi9_AB_1   20     21   24            43     44     46     47     48     50     51     52     53     54     55     56
1ez4_AB_3   33     34   37            56     57     59     60     61     63     64     65     66     67     68     70
71    73    75
1ldb_AC_5   33     34   37            56     57     59     60     61     63     64     65     66     67            70
71
2ldb_AC_5   33     34   37            56     57     59     60     61     63     64     65     66     67     68     70
71
1i0z_AB_1   33          37            56     57     59     60     61     63     64     65     66     67     68     70
71
1t2f_AB_1   33     34   37            56     57     59     60     61     63     64     65     66     67     68     70
71
1i10_AB_2   32                        55     56     58     59     60     62     63     64     65     66     67     69
70          74
1i10_BA_2   32     33   36            55     56     58     59     60     62     63     64     65     66     67     69
70          74
2ldx_AC_3   32          36            55     56     58     59     60     62     63     64     65     66            69
1hyh_AC_2   34                        57     58            61     62     64     65     66     67     68     69     71
72
1hyh_CA_2   34                        57     58     60     61     62     64     65     66     67     68     69     71
72
1guz_AD_2   13     14   17     35     36     37     39     40     41     43     44     45     46     47     48     50
51    54    55
1gv1_AD_1   13     14   17     35     36     37     39     40     41     43     44     45     46     47     48     50
51    54    55
1uxg_AB_1   15     16   19     36     37     38     40     41     42     44     45     46     47     48     49     51
52    55    56
3gvh_AB_3   16     17   20     37     38     39     41     42     43     45     46     47     48     49     50     52
53    56    57
2hjr_AD_4   27     28   31     48     49     50     52     53     54     56     57     58     59     60     61
64    67    68
1pzf_AC_2   33     35   38     56     57     58     60     61     62     64     65     66     67     68     69
72    74    75
1pzh_AC_2   33     35   38     56     57     58     60     61     62     64     65     66     67     68     69     71
72    74    75
2a92_AC_2               38     56     57     58     60     61     62     64     65     66     67     68     69     71
72    74    75
2d4a_AD_4   3012        3016   3033   3034   3035   3037   3038   3039   3041   3042   3043   3044   3045   3046   3048
3049 3052   3053
2e37_AB_6   13     14   17            36     37            40     41     43     44     45     46     47     48     50
51
      2v7p_AB_5   34    35    38          57    58          61    62    64    65    66    67    68    69    71
      72          75
      2v7p_BA_6   34    35    38          57    58          61    62    64    65    66    67    68    69    71
      72    74    75
      2v6b_AB_3   34    35    38                            61    62          65    66    67    68    69
      2v6b_BA_1   34    35    38                                  62    64    65    66    67
      2v6b_CD_1   34    35    38                                  62    64    65    66    67    68    69
      1d3a_AB_1   34    35    38          57    58    60    61    62    64    65    66    67    68    69    71
      74    75
      1ib6_AB_4                                             41    42    44    45    46    47    48          50
            52
      1ib6_DC_4               18                      40    41    42    44    45    46    47    48    49    50
            52
      1mld_AB_1   14    15    18                36    38    39    40    42    43    44    45    46    47    48
            50
      2dfd_AB_2   20          24                42    44    45    46    48    49    50    51    52    53    54
            56
      2dfd_DC_2   20    21    24                42    44    45    46    48    49    50    51    52    53    54
            56
      1sev_AB_2                                       82    83    84    86    87    88    89    90          92
            94
      1sev_BA_2               62                      82    83    84    86    87    88    89    90          92
            94
      1smk_BA_2               62                      82    83    84    86    87    88    89    90    91    92
            94
      1smk_EF_2               62                80    82    83    84    86    87    88    89    90    91    92
            94
      1smk_CD_2   58          62                80    82    83    84    86    87    88    89    90    91    92
            94

Alignment Occupancy     0.673 0.5   0.804 0.217 0.717 0.826 0.804 0.956 1     0.978 1     0.869 1     0.978 0.869
      0.869 0.478 0.282 0.586
Gap in betw Columns     0     2     17,25 0     1     0     0     1     0     0     0     0     0     0,1   1,4

SLIM RegEx
      [GDKASQNV][KAVHMILNTDRG].[PQKEDIVR][GA][VKEDHQ].[MLAEIV][DE][LIFTM][SQAENYLDTR][HDE][ACGSIMVT].{0,1}[APLDVESG
].{1,4}[PDGNAKTR]
SLIM Coverage           0.91304347826087
SLIM PSSM Match Cutoff 36.6961763929278
SLIM I=181997 Im=7550 Id=70 Idm=10
SLIM PSSM p-value 0.000469913495352591

PSSM Listing
Pos 0 G(4.571) D(4.121) K(2.799) N(2.253) Q(1.950) A(1.649) S(1.168) E(0.627) V(0.380) T(0.329) R(0.044) I(-0.70)
M(-1.54) H(-1.56) P(-1.61) C(-1.97) L(-2.07) Y(-2.54) W(-2.91) F(-2.92)
Gap (0)
Pos 1 H(5.270) K(3.484) N(2.896) M(2.373) D(2.224) G(2.204) A(2.003) V(1.842) I(1.797) R(1.618) L(1.579) T(0.554)
E(-0.01) Q(-0.05) S(-0.12) Y(-0.43) F(-1.24) C(-1.33) P(-1.41) W(-2.61)
Gap (1)
Pos 2 P(5.369) Q(3.315) E(3.206) K(3.166) D(2.943) R(1.611) I(1.046) V(0.317) T(0.135) N(-0.36) S(-0.49) M(-0.76)
H(-0.79) L(-0.80) A(-1.20) Y(-1.93) G(-2.18) F(-2.49) C(-2.88) W(-3.04)
Gap (0)
Pos 3 G(5.809) A(2.072) T(0.830) S(0.166) V(-0.16) D(-1.13) C(-1.76) P(-1.83) N(-1.83) E(-1.83) Q(-1.83) R(-1.83)
K(-1.83) H(-2.04) W(-2.13) M(-2.41) I(-2.76) L(-2.76) F(-2.83) Y(-2.83)
Gap (0)
Pos 4 H(5.271) D(3.819) E(3.422) K(3.392) V(3.117) I(2.119) Q(1.692) R(0.588) M(0.228) L(0.154) N(-0.09) T(-0.18)
Y(-0.35) S(-0.50) A(-0.53) P(-1.35) F(-1.59) C(-1.74) G(-2.07) W(-2.92)
Gap (1)
Pos 5 M(3.859) E(2.970) L(2.833) A(2.397) V(2.054) I(1.805) Q(0.324) D(0.014) S(-0.19) F(-0.41) K(-0.54) C(-0.82)
T(-1.01) R(-1.03) Y(-1.25) N(-1.34) G(-1.44) H(-1.53) P(-1.70) W(-1.78)
Gap (0)
Pos 6 D(5.786) E(3.554) T(0.867) N(0.867) Q(0.810) S(0) K(-0.18) H(-0.71) P(-1) G(-1.13) R(-1.18) A(-1.71) M(-2.71)
Y(-2.71) I(-3) V(-3) F(-3) C(-3.13) L(-3.71) W(-3.71)
Gap (0)
Pos 7 F(3.578) L(3.179) I(2.981) M(2.329) V(2.166) T(0.914) Y(0.705) W(-1.13) C(-1.20) A(-1.20) S(-1.42) P(-1.83)
Q(-1.83) D(-1.91) G(-1.98) K(-2.02) H(-2.15) R(-2.25) N(-2.42) E(-2.42)
Gap (0)
Pos 8 Y(4.272) N(3.593) Q(3.414) D(2.951) E(2.910) S(2.796) A(1.928) R(1.418) L(1.309) T(0.928) F(0.374) K(0.373)
V(0.357) H(-0.00) M(-0.11) I(-0.49) G(-0.50) W(-0.60) P(-1.04) C(-1.29)
Gap (0)
Pos 9 H(7.572) D(4.593) E(2.729) Y(1.577) N(0.920) Q(0.427) T(0.328) R(-0.25) S(-0.56) K(-0.57) F(-1.36) P(-1.56)
G(-1.67) A(-1.87) M(-2.18) V(-2.25) W(-2.33) I(-3.02) C(-3.07) L(-3.18)
Gap (0)
Pos 10 C(7.368) G(3.970) A(2.533) M(2.326) S(1.921) I(1.786) V(1.053) T(0.708) L(0.346) N(-0.82) Q(-1.16) K(-1.30)
D(-1.32) E(-1.38) F(-1.39) P(-1.48) R(-1.68) Y(-1.88) H(-2.01) W(-2.38)
Gap (0,1)
Pos 11 P(5.369) D(3.794) A(2.593) E(2.368) G(2.209) L(2.010) V(2.009) I(1.036) S(0.757) M(0.291) T(0.120) Q(-0.21)
N(-0.52) K(-0.84) C(-1.06) R(-1.48) F(-1.55) H(-1.68) Y(-1.96) W(-3.06)
Gap (1,4)
Pos 12 P(5.118) D(3.790) G(3.786) N(3.570) K(1.924) R(1.310) A(0.954) T(0.852) E(0.129) S(-0.30) Q(-0.73) H(-1.75)
V(-1.88) M(-2.39) C(-2.55) Y(-3.04) L(-3.13) I(-3.18) F(-3.50) W(-3.59)
//

===============================
 SLIM 195
===============================
ID          Ldh_1_N.clust.0.15.2
Center            1i10_EH_0
AvSimToCtr 0.387
AvRMSDToCtr 1.151 A
Size         18
NumDistinct 7
FracDDI             0
FracPeptides        0
FracIntra    0
Species             HOMO SAPIENS (4), WEISSELLA CONFUSA (1)
Conservation        0.8

Members
      1hyh_AD_0 1hyh_BC_0 1hyh_DA_0 1hyh_CB_0 2v6b_AC_0 2v6b_BD_0 2v6b_DB_0 2v6b_CA_0 1i10_BC_0 1i10_DA_0
      1i10_CB_0 1i10_HE_0 1i10_FG_0 1i10_GF_0 1t2f_AC_0 1t2f_BD_0 1t2f_CA_0 1t2f_DB_0

Peptides

PartnerDomains

Dist Members Intf   Alignment
      1i10_EH_0     L     L     K     Q        N    E     M     K     N     L
      1hyh_AD_0                                     K     M     A     D     A
      2v6b_AC_0                                     E     L     R           R
      2v6b_BD_0                                     E     L     R     D     R
      1t2f_AC_0     V     A           N             E           K     N     L
      1t2f_BD_0     V     A                         E     L     K     N     L
      1t2f_CA_0     V     A           N             E     L     K     N     L

Dist Members ResidueID Alignment
      1i10_EH_0   11    12    13      19       20   260   263   264   265   266
      1hyh_AD_0                                     261   264   265   266   267
      2v6b_AC_0                                     259   262   263         265
      2v6b_BD_0                                     259   262   263   264   265
      1t2f_AC_0   11    12            20            261         265   266   267
      1t2f_BD_0   11    12                          261   264   265   266   267
      1t2f_CA_0   11    12            20            261   264   265   266   267

Alignment Occupancy       0.571 0.571 0.142 0.428 0.142 1       0.857 1     0.857 1
Gap in betw Columns       0     247,248     2     0     0       0

SLIM   RegEx        [EK]..[LM][KRA][ND][LRA]
SLIM   Coverage           0.857142857142857
SLIM   PSSM Match Cutoff 18.3355310283636
SLIM   I=181997 Im=10111 Id=70 Idm=8
SLIM   PSSM p-value 0.0247479057208422

PSSM Listing
Pos 0 E(4.848) K(3.158) Q(1.905) D(1.854) R(0.648) S(0) T(0) N(0) H(-0.09) P(-1) A(-1)                 M(-1.78) G(-2) Y(-2) L(-2.78)
I(-3) V(-3) F(-3) W(-3) C(-3.78)
Gap (2)
Pos 1 M(3.842) L(3.505) V(2.443) I(1.609) F(-0.15) Q(-1.01) C(-1.15) A(-1.15) Y(-1.15)                 S(-1.70) T(-1.70) R(-1.70)
K(-1.70) W(-1.70) P(-2.70) N(-2.70) E(-2.70) H(-2.70) G(-3.70) D(-3.70)
Gap (0)
Pos 2 K(4.465) R(3.843) A(2.093) Q(0.868) E(0.637) S(0.062) N(-0.09) T(-0.31) H(-0.66)                 M(-1) P(-1.19) D(-1.31) G(-
1.35) C(-1.68) L(-1.78) Y(-2) I(-2.35) V(-2.78) F(-2.78) W(-3)
Gap (0)
Pos 3 N(5.443) D(4.760) E(0.986) S(0.609) T(0.298) Q(-0.15) G(-0.39) K(-0.39) R(-0.49)                 H(-1.15) P(-1.70) A(-2.15)
M(-2.39) Y(-2.39) C(-3.15) I(-3.15) V(-3.15) F(-3.15) L(-3.39) W(-4.15)
Gap (0)
Pos 4 R(3.750) L(3.443) V(2.443) A(2.093) M(1.477) I(1.456) K(0.806) Q(-0.09) F(-0.50)                 S(-0.56) C(-1.00) N(-1.00)
E(-1.00) H(-1.09) Y(-1.31) T(-1.44) G(-1.65) P(-2.12) W(-2.31) D(-2.68)
//

===============================
 SLIM 196
===============================
ID           Lectin_legB.clust.0.15.0
Center             1ukg_AB_0
AvSimToCtr 0.446
AvRMSDToCtr 1.406 A
Size         199
NumDistinct 45
FracDDI            0.622222222222222
FracPeptides       0
FracIntra    0
Species            ARACHIS HYPOGAEA (19), PISUM SATIVUM (5), LATHYRUS OCHRUS (4), LENS CULINARIS (3), ULEX EUROPAEUS
(3), VICIA VILLOSA (2), PHASEOLUS VULGARIS (2), ULEX EUROPEUS (2), DOLICHOS BIFLORUS (1), VICIA FABA (1),
PTEROCARPUS ANGOLENSIS (1)
Conservation       0.441860465116279

Members
      1avb_AB_0   1avb_BA_0   1bjq_AB_0   1bjq_BA_0   1bjq_CD_0   1bjq_DC_0   1bjq_EF_0   1bjq_HG_0   1bjq_FE_0   1bjq_GH_0
      1lu2_AB_0   1lu2_BA_0   1g7y_CD_0   1g7y_DC_0   1fat_AB_0   1fat_BA_0   1fat_CD_0   1fat_DC_0   1g8w_AB_0   1g8w_BA_0
      1g8w_CD_0   1g8w_DC_0   1fx5_AB_0   1fx5_BA_0   1jxn_AB_0   1jxn_DC_0   1jxn_BA_0   1jxn_CD_0   2b7y_AC_0   2b7y_CA_0
      1bqp_AC_0   1bqp_CA_0   1rin_AC_0   1hkd_AC_0   2ltn_AC_0   2bqp_AB_0   1ofs_AC_0   1hkd_CA_0   2ltn_CA_0   1ofs_CA_0
      2bqp_BA_0   1loa_AC_0   1lob_AC_0   1loc_AC_0   1lod_AC_0   1loa_EG_0   1lob_EG_0   1lod_EG_0   1loc_EG_0   1loe_AC_0
      1log_AC_0   1lof_AC_0   1loa_CA_0   1lob_CA_0   1loc_CA_0   1lod_CA_0   1loa_GE_0   1lob_GE_0   1lod_GE_0   1loc_GE_0
      1loe_CA_0   1log_CA_0   1lof_CA_0   1rin_CA_0   1len_AC_0   1les_AC_0   2lal_AC_0   1len_CA_0   1les_CA_0   2lal_CA_0
      1n47_AB_0   1n47_DC_0   1n47_BA_0   1n47_CD_0   1lgc_AC_0   1lgc_CA_0   1dzq_AB_0   1dzq_DC_0   1dzq_BA_0   1dzq_CD_0
      1qot_AB_0   1qot_BA_0   1qot_CD_0   1qot_DC_0   1qnw_AB_0   1qnw_DC_0   1qoo_AB_0   1qoo_DC_0   1qnw_BA_0   1qnw_CD_0
      1qoo_BA_0   1qoo_CD_0   1n3o_AB_0   2phu_AB_0   1n3q_AB_0   1n3p_AB_0   1q8p_AB_0   1s1a_AB_0   2phr_AB_0   2phw_AB_0
      2auy_AB_0   2phf_AB_0   2pht_AB_0   2ar6_AB_0   2are_AB_0   2arb_AB_0   2phx_AB_0   1q8v_AB_0   1q8s_AB_0   2gnt_AB_0
      2arx_AB_0   2gnd_AB_0   2gnm_AB_0   1n3o_BA_0   2phu_BA_0   1n3q_BA_0   1n3p_BA_0   1q8p_BA_0   1s1a_BA_0   1ukg_BA_0
      2phr_BA_0   2phw_BA_0   2auy_BA_0   2phf_BA_0   2pht_BA_0   2ar6_BA_0   2are_BA_0   2arb_BA_0   2phx_BA_0   1q8s_BA_0
      2gnt_BA_0   1q8v_BA_0   2arx_BA_0   2gnd_BA_0   2gnm_BA_0   1q8q_AB_0   1q8q_BA_0   1q8o_AB_0   1q8o_BA_0   2gnb_AB_0
      2gnb_BA_0   2gme_AB_0   2gn3_AB_0   2gmm_AB_0   2gmp_AB_0   2gme_BA_0   2gn3_BA_0   2gmm_BA_0   2gmp_BA_0   2gn7_AB_0
      2gn7_BA_0   1g7y_AB_0   1g7y_BA_0   1bzw_AB_0   1qf3_AB_0   1v6j_AB_0   1bzw_BA_0   1qf3_BA_0   1v6j_BA_0   1ciw_AB_0
      1ciw_BA_0   2tep_AB_0   2tep_BA_0   1v6i_AB_0   1v6l_AB_0   1v6k_AB_0   1v6k_BA_0   1v6l_BA_0   1v6i_BA_0   2pel_BA_0
      2pel_AB_0   1cr7_AB_0   1cr7_EF_0   1v6m_AB_0   1v6o_AB_0   1v6m_EF_0   1v6o_EF_0   1cr7_BA_0   1cr7_FE_0   1v6m_FE_0
      1v6o_FE_0   1v6m_BA_0   1v6o_BA_0   1rir_AB_0   1rir_BA_0   1rit_AB_0   1rit_BA_0   2dv9_AB_0   2dva_AB_0   2dvg_AB_0
      2dvb_AB_0   2dvf_AB_0   2dvd_AB_0   2dv9_BA_0   2dva_BA_0   2dvd_BA_0   2dvf_BA_0   2dvb_BA_0   2dvg_BA_0

Peptides

PartnerDomains
      Lectin_legB
(1ukg_AB_0,1bjq_AB_0,1g7y_CD_0,1fat_AB_0,1fx5_AB_0,1jxn_AB_0,1jxn_BA_0,2b7y_AC_0,1bqp_AC_0,1bqp_CA_0,2bqp_AB_0,1hkd
_CA_0,2bqp_BA_0,1loa_AC_0,1lod_AC_0,1loa_GE_0,1loe_CA_0,1len_AC_0,1les_CA_0,1n47_AB_0,1n47_BA_0,1lgc_AC_0,1v6l_AB_0
,1v6l_BA_0,1v6o_AB_0,1rir_AB_0,1rir_BA_0,2dvg_BA_0)

Dist Members Intf   Alignment
      1ukg_AB_0     D     S      L        S     F       G     F       P       P     D       Q     K       N       F     S     A   Q
      E     W
      1avb_AB_0           D      A        S     F       N     V       E                           T       N       Y     S     A   P
      D     W
      1bjq_AB_0     N     I      Q        S     F       S     F       K                           P       S       Y     S     S   P
      D     Y
      1g7y_CD_0     D     I      Q        S     F       S     F       K                           S       S       Y     S     S   P
            Y
      1fat_AB_0     N     D      I        Y     F       N     F       Q                           T       N       Y     S     A   P
            W
      1fx5_AB_0     D     D      L        S     F       K     F       K                           K       D       Y     I     A   P
            W
      1jxn_AB_0     D     D      L        S     F       K     F       K                     G     K       D       Y     I     A   P
      N     W
      1jxn_BA_0     D     D      L        S     F       K     F       K       S     N       G     K       D       Y     I     A   P
            W
      2b7y_AC_0     E     I      T        S     F       S     I       P                           P       N       Y     S     L   P
      D
      1bqp_AC_0     E     T      T        S     F       L     I               S     D       Q     Q       N       Y     S     S   P
      1bqp_CA_0     E     T      T        S     F       L     I       T       S             Q     Q       N       Y     S     S   P
      2bqp_AB_0     E     T      T        S     F       L     I       T       S             Q     Q       N       Y     S     S   P
            W
      1hkd_CA_0     E     T      T        S     F       L     I               S             Q     Q       N       Y     S     S   P
      D
      2bqp_BA_0     E     T      T        S     F       L     I       T       S     D       Q     Q       N       Y     S     S   P
            W
1loa_AC_0   E   T   T   S   F   S   I               Q   Q   N   Y   S   S   P
1lod_AC_0   E   T   T   S   F   S   I           D   Q   Q   N   Y   S   S   P
1loa_GE_0   E   T   T   S   F   S   I       G       Q   Q   N   Y   S   S   P
1loe_CA_0   E   T   T   S   F   S   I   T           Q   Q   N   Y   S   S   P
1len_AC_0   E   T   T   S   F   S   I   T           Q   Q   N   Y   S   T   P
1les_CA_0   E   T   T   S   F   S   I               Q   Q   N   Y   S   T   P
D
2lal_CA_0       T   T   S   F   S   I   T           Q   Q   N   Y   S   T   P
D
1n47_AB_0   E   S   T   S   F   S   F       N   N   Q   N   N   Y   A   A   P
      Y
1n47_BA_0   E   S   T   S   F   S   F   T   N       Q   N   N   Y   A   A   P
      Y
1lgc_AC_0   E   T   T   S   F   S   I   T           Q   P   N   Y   S   S   P
1dzq_AB_0       D   L   S   F   N           V       Q   K   N   Y   A   A   P
D     W
1qot_AB_0       D   L   S   F   N       D   V       Q   K   N   Y   A   A   P
D     W
1bzw_AB_0               S                   S   E   G   P   A   Y   M       V
      R
1qf3_AB_0               S                   E   G   N   P   A   Y   M       V
      R
1v6j_BA_0   A       T   S                   E   G   N   P   A   Y   M   P   V
      R
1ciw_AB_0               S       N           E   G   N   P   A   Y   M       P
      R
2tep_AB_0               S                   S   E   G   P   A   Y       M   P
      R
1v6i_AB_0               S       N           E   G   N   P   A   Y   A   M   P
      R
1v6l_AB_0   E           S       N           S   E   G   P   A   Y   M       V
      R
1v6k_AB_0   A       T   S       N           S   E   G   P   A   Y   M   P   V
      R
1v6k_BA_0           T   S       N           S   E   G   P   A   Y   M       P
      R
1v6l_BA_0   E   T   V   S       N           E   G   N   P   A   Y   M   P   V
      R
1v6i_BA_0   A           S                   E   G   N   P   A   Y   A   M   P
      R
1v6m_AB_0                                   E   G       P   A   Y       M   V
      R
1v6o_AB_0   E           S       N           E   G   N   P   A   Y       M   P
      R
1v6o_EF_0                                   S   G       P   A   Y   M       V
      1v6o_FE_0   A                S                    E    G    N    P    A    Y         M    V
            R
      1rir_AB_0   E                S       N            S         G    P    A    Y    A    M    P
            R
      1rir_BA_0   E                S       N            S    E    G    P    A    Y    A    M    P
            R
      2dvd_BA_0                    S                    S    G    N    P    A    Y    A    M    P
            R
      2dvg_BA_0   E           V    S                    S         G    P    A    Y    A    M    P
            R

Dist Members ResidueID Alignment
      1ukg_AB_0   2     3     4    5   6   7   8   9    12   14   15   16   17   52   53   54
      55    60    210
      1avb_AB_0         3     4    5   6   7   8   9                   14   15   48   49   50
      51    56    195
      1bjq_AB_0   2     3     4    5   6   7   8   9                   14   15   50   51   52
      53    58    203
      1g7y_CD_0   2     3     4    5   6   7   8   9                   14   15   50   51   52
      53          203
      1fat_AB_0   2     3     4    5   6   7   8   9                   14   15   51   52   53
      54          202
      1fx5_AB_0   2     3     4    5   6   7   8   9                   16   17   51   52   53
      54          210
      1jxn_AB_0   2     3     4    5   6   7   8   9              15   16   17   51   52   53
      54    59    209
      1jxn_BA_0   2     3     4    5   6   7   8   9    12   14   15   16   17   51   52   53
      54          209
      2b7y_AC_0   3     4     5    6   7   8   9   10                  17   18   47   48   49
      50    55
      1bqp_AC_0   2     3     4    5   6   7   8        12   14   15   16   17   46   47   48
      49
      1bqp_CA_0   2     3     4    5   6   7   8   9    12        15   16   17   46   47   48
      49
      2bqp_AB_0   2     3     4    5   6   7   8   9    12        15   16   17   46   47   48
      49          206
      1hkd_CA_0   2     3     4    5   6   7   8        12        15   16   17   46   47   48
      49    54
      2bqp_BA_0   2     3     4    5   6   7   8   9    12   14   15   16   17   46   47   48
      49          206
      1loa_AC_0   2     3     4    5   6   7   8                  15   16   17   46   47   48
      49
      1lod_AC_0   2     3     4    5   6   7   8             14   15   16   17   46   47   48
      49
1loa_GE_0   2     3   4   5   6   7   8        12        15   16   17   46   47   48
49
1loe_CA_0   2     3   4   5   6   7   8   9              15   16   17   46   47   48
49
1len_AC_0   2     3   4   5   6   7   8   9              15   16   17   46   47   48
49
1les_CA_0   2     3   4   5   6   7   8                  15   16   17   46   47   48
49    54
2lal_CA_0         3   4   5   6   7   8   9              15   16   17   46   47   48
49    54
1n47_AB_0   2     3   4   5   6   7   8        12   14   15   16   17   52   53   54
55          202
1n47_BA_0   2     3   4   5   6   7   8   9    12        15   16   17   52   53   54
55          202
1lgc_AC_0   2     3   4   5   6   7   8   9              15   16   17   46   47   48
49
1dzq_AB_0         5   6   7   8   9            14        17   18   19   52   53   54
55    60    209
1qot_AB_0         5   6   7   8   9       11   14        17   18   19   52   53   54
55    60    209
1bzw_AB_0                 5                    12   13   14   16   17   48   50
52          53
1qf3_AB_0                 5                    13   14   15   16   17   48   50
52          53
1v6j_BA_0   1         3   5                    13   14   15   16   17   48   50   51
52          201
1ciw_AB_0                 5       7            13   14   15   16   17   48   50
51          53
2tep_AB_0                 5                    12   13   14   16   17   48        50
51          201
1v6i_AB_0                 5       7            13   14   15   16   17   48   49   50
51          53
1v6l_AB_0   2             5       7            12   13   14   16   17   48   50
52          53
1v6k_AB_0   1         3   5       7            12   13   14   16   17   48   50   51
52          53
1v6k_BA_0             3   5       7            12   13   14   16   17   48   50
51          53
1v6l_BA_0   2     3   4   5       7            13   14   15   16   17   48   50   51
52          201
1v6i_BA_0   1             5                    13   14   15   16   17   48   49   50
51          201
1v6m_AB_0                                      13   14        16   17   48        50
52          53
        1v6o_AB_0   2                 5           7                 13    14    15    16    17    48          50
        51          53
        1v6o_EF_0                                                   12    14          16    17    48    50
        52
        1v6o_FE_0   1                 5                             13    14    15    16    17    48          50
        52          53
        1rir_AB_0   2                 5           7                 12          14    16    17    48    49    50
        51          201
        1rir_BA_0   2                 5           7                 12    13    14    16    17    48    49    50
        51          201
        2dvd_BA_0                     5                             12    14    15    16    17    48    49    50
        51          201
        2dvg_BA_0   2           4     5                             12          14    16    17    48    49    50
        51          201

Alignment Occupancy     0.711 0.6     0.688 0.955 0.577 0.777 0.533 0.4   0.688 0.511 0.822 1     1     1     0.911
      0.866 1     0.222 0.711
Gap in betw Columns     0     0       0,1   0     0     0     3     0,1   0     0,1   0     28,35 0,1   0     0,1
      0,154

SLIM   RegEx        [EDAN][TDSI][TLQVAI].{0,1}[SY]F[SNLKG][IFV].{3}[SENVPG].{0,1}[GEDN][QGN].{0,1}[PQKTNS][NADS]
SLIM   Coverage           0.933333333333333
SLIM   PSSM Match Cutoff 29.6440253685967
SLIM   I=181997 Im=5277 Id=0 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 E(4.250) D(3.879) N(2.930) A(1.618) Q(1.291) K(0.326) S(-0.06) T(-0.16)   R(-0.58) H(-0.62) P(-1.38) G(-1.43)
M(-2.23) C(-2.25) Y(-2.44) I(-2.75) L(-2.81) V(-3.14) F(-3.14) W(-3.48)
Gap (0)
Pos 1 D(4.153) T(2.867) S(1.536) I(1.307) E(0.425) G(-0.02) P(-0.07) N(-0.08)   L(-0.60) Q(-0.62) K(-0.82) H(-0.92)
A(-1.07) M(-1.11) V(-1.42) C(-1.76) R(-1.81) F(-2.07) Y(-2.48) W(-3.68)
Gap (0)
Pos 2 T(3.141) L(2.032) Q(1.953) V(1.654) I(1.150) A(0.396) M(0.317) S(0.246)   D(0.183) P(0.170) G(0.166) E(-0.25)
K(-0.55) N(-0.72) H(-0.73) R(-1.18) C(-1.37) F(-1.45) Y(-1.89) W(-3.00)
Gap (0,1)
Pos 3 S(3.931) Y(3.198) T(0.932) A(0.932) N(0.932) Q(-0.06) E(-0.06) K(-0.06)   G(-0.06) D(-0.06) F(-0.55) H(-0.67)
M(-1.04) C(-1.06) R(-1.06) P(-1.06) W(-1.55) I(-2.00) L(-2.00) V(-2.00)
Gap (0)
Pos 4 F(5.451) Y(2.451) W(0.451) M(-0.54) I(-0.54) L(-0.54) H(-1.54) V(-1.54)   C(-2.54) S(-2.54) T(-2.54) A(-2.54)
G(-3.54) N(-3.54) D(-3.54) E(-3.54) Q(-3.54) R(-3.54) K(-3.54) P(-4.54)
Gap (0)
Pos 5 N(4.765) S(2.813) K(2.350) G(2.256) L(1.813) V(0.837) T(0.195) D(0.103)   M(-0.00) A(-0.09) R(-0.09) I(-0.12)
Q(-0.25) E(-0.26) H(-1.40) P(-1.72) F(-1.77) C(-1.79) Y(-2.04) W(-3.19)
Gap (0)
Pos 6 F(4.394) I(2.869) Y(1.420) L(0.939) V(0.757) M(0.100) W(-0.57) A(-1.80) C(-1.89) H(-2.40) S(-2.62) T(-2.62)
E(-3.55) Q(-3.55) K(-3.55) N(-3.62) D(-3.62) R(-3.62) P(-3.80) G(-4.08)
Gap (3)
Pos 7 E(3.404) P(3.202) S(2.984) N(2.950) G(2.240) V(0.921) D(0.679) Q(0.639) T(0.291) A(0.114) K(-0.03) I(-0.04)
R(-0.95) H(-1.03) M(-1.24) L(-1.70) C(-1.86) Y(-2.30) F(-2.54) W(-3.37)
Gap (0,1)
Pos 8 G(4.592) D(3.612) E(3.021) N(2.908) Q(0.141) T(0.080) S(-0.53) K(-0.74) A(-1.16) V(-1.35) R(-1.50) H(-1.53)
P(-2.11) W(-3.16) M(-3.20) Y(-3.20) F(-3.67) C(-3.85) I(-4.03) L(-4.20)
Gap (0)
Pos 9 G(4.498) N(4.395) Q(4.087) E(1.158) R(0.275) K(0.275) T(0.185) S(0.153) D(0.025) H(-0.68) M(-0.82) A(-0.92)
V(-1.25) P(-1.58) Y(-1.68) W(-2.43) L(-2.68) C(-3.19) F(-3.19) I(-3.38)
Gap (0,1)
Pos 10 P(6.284) Q(3.694) K(3.035) N(2.923) T(1.449) E(0.964) S(0.710) R(0.612) D(-0.27) H(-0.79) M(-0.88) A(-0.89)
G(-1.17) Y(-1.86) V(-2.11) L(-2.41) C(-2.64) W(-2.88) I(-2.89) F(-3.21)
Gap (0)
Pos 11 N(5.240) D(3.341) A(3.146) S(1.591) E(0.147) G(-0.04) T(-0.07) Q(-0.31) K(-0.36) R(-0.43) C(-0.76) H(-1.31)
P(-1.34) M(-1.43) I(-1.67) L(-1.68) Y(-2.04) V(-2.41) F(-2.41) W(-3.41)
//

===============================
 SLIM 197
===============================
ID           Lys.clust.0.15.7
Center             1p2c_FD_0
AvSimToCtr 0.444
AvRMSDToCtr 1.430 A
Size         7
NumDistinct 4
FracDDI            0.75
FracPeptides       0
FracIntra    0
Species            MUS MUSCULUS (3), PETROMYZON MARINUS (1)
Conservation       0.75

Members
      1bql_YL_0 2iff_YL_0 1yqv_YL_0 1mlc_EA_0 1mlc_FC_0 1p2c_CA_0 3g3b_BC_0

Peptides

PartnerDomains
      V-set (1p2c_FD_0,1bql_YL_0,2iff_YL_0)

Dist Members Intf Alignment
      1p2c_FD_0   N     Y     S     G     S     W     R
      1bql_YL_0   Y     D     W           G           P
        2iff_YL_0   Y     D     W      G       R      N      P
        3g3b_BC_0   S           A      R                     T

Dist Members ResidueID Alignment
      1p2c_FD_0   932   950   991      992     993    994    996
      1bql_YL_0   31    49    90               91            94
      2iff_YL_0   31    49    90       91      92     93     94
      3g3b_BC_0   19          21       40                    42

Alignment Occupancy       1     0.75   1       0.75   0.75   0.5   1
Gap in betw Columns       17    40     0,18    0      0      0,1

SLIM   RegEx        [GR][SRG][WN].{0,1}[PTR]
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 20.3619456447852
SLIM   I=181997 Im=6728 Id=11 Idm=2
SLIM   PSSM p-value 0.0535490290056445

PSSM Listing
Pos 0 G(5.307) R(3.615) K(0.649) T(0.372) Q(-0.29) S(-0.52) A(-0.52) V(-0.66)   N(-1.14) E(-1.14) H(-1.14) D(-1.52)
M(-2.14) P(-2.28) W(-2.52) Y(-2.83) L(-3.14) C(-3.28) F(-3.28) I(-3.83)
Gap (0)
Pos 1 G(4.616) R(3.617) S(2.638) K(0.756) T(0.372) A(0.021) N(-0.03) Q(-0.03)   E(-0.62) D(-0.97) H(-0.97) V(-1.21)
M(-1.62) P(-1.83) C(-2.14) Y(-2.52) L(-2.62) F(-2.83) W(-2.83) I(-2.97)
Gap (0)
Pos 2 W(9.613) N(4.613) Y(0.631) S(-0.36) F(-0.36) D(-0.37) G(-1.25) Q(-1.25)   T(-1.33) E(-1.33) R(-1.33) K(-1.33)
H(-2.07) M(-2.07) C(-3.07) A(-3.07) L(-3.07) P(-3.25) I(-3.69) V(-3.69)
Gap (0,1)
Pos 3 P(6.308) R(3.617) T(2.714) K(0.824) Q(0.107) S(-0.04) D(-0.10) G(-0.24)   N(-0.37) E(-0.37) H(-0.56) A(-1) M(-
1.37) C(-2.04) V(-2.17) L(-2.37) Y(-2.37) I(-2.64) F(-2.89) W(-3.37)
//

===============================
 SLIM 198
===============================
ID           Lys.clust.0.2.1
Center             2dqj_YH_0
AvSimToCtr 0.662
AvRMSDToCtr 0.460 A
Size         32
NumDistinct 16
FracDDI            1
FracPeptides       0
FracIntra    0
Species            MUS MUSCULUS (13), HOMO SAPIENS (1), ESCHERICHIA COLI (1), ESCHERICIA COLI (1)
Conservation        0.8125

Members
      1c08_CB_0   1ic7_YH_0 1j1o_YH_0 1j1p_YH_0 2dqc_YH_0 1j1x_YH_0 2dqe_YH_0 2dqg_YH_0 2dqd_YH_0 2dqh_YH_0
      1dqj_CB_0   1xgu_CB_0 1nby_CB_0 1nbz_CB_0 1ic5_YH_0 2dqi_YH_0 3d9a_CH_0 1ndg_CB_0 2eiz_CB_0 2eks_CB_0
      1ua6_YH_0   1xgp_CB_0 1xgr_CB_0 1xgt_CB_0 1xgq_CB_0 1uac_YH_0 1ic4_YH_0 2yss_CB_0 1ndm_CB_0 3hfm_YH_0
      2dqf_CB_0   2dqf_FE_0

Peptides

PartnerDomains
      V-set
(2dqj_YH_0,1ic7_YH_0,2dqc_YH_0,2dqe_YH_0,2dqg_YH_0,2dqd_YH_0,2dqh_YH_0,1ndg_CB_0,2eiz_CB_0,1ua6_YH_0,1xgp_CB_0,1xgr
_CB_0,1xgt_CB_0,1xgq_CB_0,1uac_YH_0,1ndm_CB_0)

Dist Members Intf   Alignment
      2dqj_YH_0     T     S     D     Y     Y     S     Y     S     G     S     Y     N     W     D
      1ic7_YH_0     T     S     A     Y     Y     S     Y     S     G     S     Y           W     A
      2dqc_YH_0     T     S     D     F     Y     S     Y     S     G     S     Y     N     W     D
      2dqe_YH_0     T     S     D     Y     Y     S     A     S     G     S     Y     N     W     D
      2dqg_YH_0     T     S     D     Y     Y     S     F     S     G     S     Y           W     D
      2dqd_YH_0     T     S     D     Y     F     S     Y     S     G     S     Y     N     W     D
      2dqh_YH_0     T     S     D     Y     Y     S     Y     S           S     A     N     W     D
      1ndg_CB_0     I     R     D     Y     Y     S     F     S           N     F     N     W     D
      2eiz_CB_0     R     S     D     Y     Y     S     Y     S     G     S     Y     R     W     D
      1ua6_YH_0     T     S     D     Y     Y     S                       S     F           W     D
      1xgp_CB_0     T     S     D     A     Y     S                       S     Y           W
      1xgr_CB_0     T     S     D     I     Y     S                             Y           W
      1xgt_CB_0     T     S     D     L     Y     S                             Y           W
      1xgq_CB_0     T     S     D     V     Y     S                             Y           W
      1uac_YH_0     T     S     D     Y     Y     S     S                 S     F           W     D
      1ndm_CB_0                 D     Y     Y     S     Y     S     G     S     Y     R     W     E

Dist Members ResidueID Alignment
      2dqj_YH_0   30    31    32      33    50    52    53    54    55    56    58    97    98    99
      1ic7_YH_0   30    31    32      33    50    52    53    54    55    56    58          98    99
      2dqc_YH_0   30    31    32      33    50    52    53    54    55    56    58    97    98    99
      2dqe_YH_0   30    31    32      33    50    52    53    54    55    56    58    97    98    99
      2dqg_YH_0   30    31    32      33    50    52    53    54    55    56    58          98    99
      2dqd_YH_0   30    31    32      33    50    52    53    54    55    56    58    97    98    99
      2dqh_YH_0   30    31    32      33    50    52    53    54          56    58    97    98    99
      1ndg_CB_0   330   331   332     333   350   352   353   354         356   358   397   398   399
      2eiz_CB_0   30    31    32      33    50    52    53    54    55    56    58    97    98    99
      1ua6_YH_0   30    31    32      33    50    52                      56    58          98    99
      1xgp_CB_0   30    31    32      33    50    52                      56    58          98
        1xgr_CB_0   30    31    32    33       50    52                            58          98
        1xgt_CB_0   30    31    32    33       50    52                            58          98
        1xgq_CB_0   30    31    32    33       50    52                            58          98
        1uac_YH_0   30    31    32    33       50    52    53                56    58          98    99
        1ndm_CB_0               332   333      350   352   353   354   355   356   358   397   398   399

Alignment Occupancy       0.937 0.937 1        1     1     1     0.687 0.625 0.5   0.812 1     0.5   1     0.75
Gap in betw Columns       0     0     0        16    1     0     0     0     0     1     38    0     0

SLIM   RegEx        [YF].S[YFSA]SG[SN].[YFA]
SLIM   Coverage           0.875
SLIM   PSSM Match Cutoff 19.3425079613185
SLIM   I=181997 Im=6871 Id=11 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Y(6.936) F(3.785) W(1.959) H(1.938) M(-0.89) I(-0.89) L(-0.89) V(-1) Q(-1.05) C(-2) S(-2) T(-2) A(-2) N(-2.04)
E(-2.04) R(-2.04) K(-2.04) G(-3) D(-3) P(-3.04)
Gap (1)
Pos 1 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 2 Y(6.178) F(4.081) S(1.297) A(1.297) W(1.275) H(1.196) M(-1.10) I(-1.14) L(-1.14) T(-1.31) N(-1.35) Q(-1.37)
V(-1.49) C(-1.82) G(-1.87) E(-1.89) K(-1.89) R(-2.19) D(-2.31) P(-2.65)
Gap (0)
Pos 3 S(3.529) T(0.529) A(0.529) N(0.529) G(-0.47) D(-0.47) E(-0.47) Q(-0.47) K(-0.47) C(-1.47) P(-1.47) H(-1.47)
R(-1.47) M(-1.47) I(-2.47) L(-2.47) V(-2.47) F(-2.47) Y(-2.47) W(-3.47)
Gap (0)
Pos 4 G(5.306) T(0.306) S(-0.69) A(-0.69) V(-0.69) D(-1.69) P(-2.69) N(-2.69) E(-2.69) Q(-2.69) H(-2.69) R(-2.69)
K(-2.69) W(-2.69) C(-3.69) M(-3.69) F(-3.69) Y(-3.69) I(-4.69) L(-4.69)
Gap (0)
Pos 5 S(3.716) N(3.305) T(0.742) A(0.716) D(-0.08) G(-0.20) E(-0.20) Q(-0.20) K(-0.20) R(-1.08) H(-1.20) P(-1.25)
M(-1.25) C(-1.27) Y(-2.20) I(-2.25) L(-2.25) V(-2.25) F(-2.25) W(-3.25)
Gap (1)
Pos 6 Y(6.716) F(4.507) W(1.800) H(1.726) A(1.263) M(-0.72) I(-0.72) L(-0.72) V(-1.04) Q(-1.17) S(-1.21) C(-1.66)
T(-1.89) N(-2.01) E(-2.01) R(-2.01) K(-2.01) G(-2.21) P(-2.75) D(-2.89)
//

===============================
 SLIM 199
===============================
ID          MAM33.clust.0.15.0
Center            1yqf_EF_0
AvSimToCtr 0.468
AvRMSDToCtr 1.171 A
Size        8
NumDistinct 4
FracDDI             0.25
FracPeptides        0
FracIntra    0
Species             HOMO SAPIENS (3), LEISHMANIA MAJOR (1)
Conservation        0.75

Members
      1p32_AC_0 1p32_BA_0 1p32_CB_0 1yqf_AB_0 1yqf_DE_0 1yqf_BC_0 1yqf_CA_0 1yqf_FD_0

Peptides

PartnerDomains
      MAM33 (1yqf_EF_0)

Dist Members Intf   Alignment
      1yqf_EF_0     I     Q     Q     T      M      I     R     F     A      E      A      N      E     L     Y     T     G
      P     L       L     D     L     V      Y
      1p32_AC_0     V     K     K            L      V     S     F                          D      T     N     Y     T     L
            S       L     D     L     L      F
      1p32_BA_0     V     K           A      L      V     S     F                          D      T     N     Y     T     L
            N       L     D     L     L      F
      1p32_CB_0     V     K     K     A      L      V     S     F                          D      T     N     Y     T     L
                    L     D     L     L      F

Dist Members ResidueID Alignment
      1yqf_EF_0   90    92    96      97     98     114   115   116   128    129    132    135    136   137   138   139
      140   141   142   146   147     150    154    157
      1p32_AC_0   172   174   180            182    209   210   211                        221    222   223   224   225
      226         230   231   232     235    239    242
      1p32_BA_0   172   174           181    182    209   210   211                        221    222   223   224   225
      226         227   231   232     235    239    242
      1p32_CB_0   172   174   180     181    182    209   210   211                        221    222   223   224   225
      226               231   232     235    239    242

Alignment Occupancy        1    1     0.75   0.75   1     1     1     1      0.25   0.25   0.25   1     1     1     1     1
      1     0.25 0.75      1    1     1      1      1
Gap in betw Columns        1    3,5   0      0      13,20 0     0     9,18   0      0      0      0     0     0,3   0,3   0
      2     3     2

SLIM   RegEx        [DN][TE][NL]YT[LG].{0,3}[SNL].{0,3}LD..L.{3}[LV]..[FY]
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 31.0086767198246
SLIM   I=181997 Im=5454 Id=162 Idm=1
SLIM   PSSM p-value 1
PSSM Listing
Pos 0 D(5.714) N(4.633) E(1.756) T(0.827) S(0.357) Q(0) G(-0.64) K(-0.64) H(-1) R(-1.04) P(-1.17) A(-2) M(-2.64)
Y(-2.64) C(-3) I(-3) V(-3) F(-3) L(-3.64) W(-4)
Gap (0)
Pos 1 T(3.718) E(3.633) D(1.357) Q(0.954) S(0.827) P(0.756) G(0.728) K(0.357) N(0) H(0) R(-0.64) A(-1) M(-1.17) C(-
1.27) Y(-2) I(-2.17) L(-2.17) V(-2.17) F(-2.17) W(-3)
Gap (0)
Pos 2 N(5.712) L(2.616) V(1.621) S(0.728) D(0.714) M(0.667) I(0.633) T(-0.24) Q(-0.24) R(-0.24) K(-0.24) E(-0.27)
G(-0.28) H(-1.24) F(-1.24) A(-1.64) Y(-1.64) C(-2.04) P(-2.17) W(-3.04)
Gap (0)
Pos 3 Y(7) F(3) H(2) W(2) Q(-1) M(-1) I(-1) L(-1) V(-1) C(-2) S(-2) T(-2) A(-2) N(-2) E(-2) R(-2) K(-2) P(-3) G(-3)
D(-3)
Gap (0)
Pos 4 T(4) S(1) P(1) G(1) D(1) N(0) E(0) Q(0) H(0) K(0) C(-1) A(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
Gap (0)
Pos 5 G(4.613) L(3.712) V(2.728) M(1.714) I(1.713) T(-0.24) F(-0.27) A(-0.64) S(-1.04) C(-1.24) Y(-1.24) Q(-2) R(-2)
K(-2) W(-2) D(-2.24) P(-2.64) N(-2.64) E(-2.64) H(-2.64)
Gap (0,3)
Pos 6 N(4.620) S(2.664) L(2.617) V(1.622) M(0.679) I(0.638) T(-0.03) D(-0.06) A(-0.21) Q(-0.62) K(-0.62) E(-0.66)
G(-0.68) R(-0.97) F(-1.21) C(-1.62) H(-1.62) Y(-1.83) P(-1.97) W(-2.97)
Gap (0,3)
Pos 7 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (0)
Pos 8 D(6) E(2) T(1) N(1) S(0) Q(0) P(-1) G(-1) H(-1) K(-1) A(-2) R(-2) C(-3) M(-3) I(-3) V(-3) F(-3) Y(-3) L(-4)
W(-4)
Gap (2)
Pos 9 L(4) V(3) M(2) I(2) F(0) C(-1) A(-1) Y(-1) S(-2) T(-2) Q(-2) R(-2) K(-2) W(-2) P(-3) N(-3) E(-3) H(-3) G(-4)
D(-4)
Gap (3)
Pos 10 L(3.728) V(3.357) I(2.357) M(1.827) F(-0.17) A(-0.64) C(-1) Y(-1) S(-2) T(-2) Q(-2) K(-2) R(-2.17) W(-2.17)
P(-2.64) E(-2.64) N(-3) H(-3) G(-3.64) D(-3.64)
Gap (2)
Pos 11 F(5.728) Y(5.667) W(1.357) H(0.752) M(-0.17) I(-0.17) L(-0.17) V(-1) C(-2) S(-2) T(-2) A(-2) Q(-2.04) N(-
2.64) E(-2.64) R(-2.64) K(-2.64) G(-3) D(-3) P(-3.64)
//

===============================
 SLIM 200
===============================
ID          MATH.clust.0.2.0
Center            1d0a_CI_0
AvSimToCtr 0.708
AvRMSDToCtr 0.359 A
Size         33
NumDistinct 9
FracDDI             0
FracPeptides        1
FracIntra    0
Species             HOMO SAPIENS (1)
Conservation        1

Members
      1ca9_AG_0   1ca9_BH_0   1d0j_AG_0 1d0j_DI_0 1d0j_EJ_0 1czy_AD_0 1czy_CE_0 1d00_AI_0 1d00_DL_0 1d00_FN_0
      1d00_BJ_0   1d00_HP_0   1d00_EM_0 1d00_GO_0 1d00_CK_0 1d0a_AG_0 1d0a_BH_0 1d0a_EK_0 1d0a_FL_0 1d0a_DJ_0
      1qsc_AD_0   1qsc_BE_0   1qsc_CF_0 1d0j_CH_0 1d0j_FK_0 1czz_AD_0 1czz_BE_0 1l0a_AB_0 1d01_DG_0 1d01_EH_0
      1d01_FI_0   1zms_AB_0   2gkw_AB_0

Peptides
      1d0a-I 1ca9-G 1d0j-G 1czy-D 1d00-I 1qsc-D 1l0a-B 1d01-G 2gkw-B

PartnerDomains

Dist Members Intf   Alignment
      1d0a_CI_0     P     I       Q     E     E
      1ca9_AG_0     S     K       E     E     C
      1d0j_AG_0     A     A       Q     E     E
      1czy_AD_0     P     Q       Q     A     T
      1d00_AI_0     P     V       Q     E     T
      1qsc_AD_0     P     I       Q     E     T
      1l0a_AB_0     P     I       Q     C     T
      1d01_DG_0     S     V       E     E     E
      2gkw_AB_0     P     V       P     A

Dist Members ResidueID Alignment
      1d0a_CI_0   262   263   264       265   266
      1ca9_AG_0   424   425   426       427   428
      1d0j_AG_0   232   233   234       235   236
      1czy_AD_0   204   205   206       207   208
      1d00_AI_0   250   251   252       253   254
      1qsc_AD_0   250   251   252       253   254
      1l0a_AB_0   3     4     5         6     7
      1d01_DG_0   578   579   580       581   582
      2gkw_AB_0   162   163   164       165

Alignment Occupancy       1       1     1     1     0.888
Gap in betw Columns       0       0     0     0

SLIM RegEx          [PSA][IVAQK][QEP][EAC][TEC]
SLIM   Coverage           0.777777777777778
SLIM   PSSM Match Cutoff 19.7012897526523
SLIM   I=181997 Im=8463 Id=454 Idm=27
SLIM   PSSM p-value 0.0356444768904535

PSSM Listing
Pos 0 P(6.594) S(2.540) A(1.933) T(0.898) N(-0.11) E(-0.67) Q(-0.67) K(-0.67)   D(-0.72) G(-0.85) C(-1.48) R(-1.54)
M(-1.54) H(-1.67) V(-2) I(-2.26) L(-2.26) Y(-2.54) F(-2.85) W(-3.54)
Gap (0)
Pos 1 I(3.216) V(2.951) K(2.827) Q(2.827) A(1.887) L(1.235) M(0.695) E(0.203)   R(0.179) S(-0.48) F(-0.72) C(-1.00)
T(-1.04) Y(-1.15) N(-1.21) D(-1.60) H(-1.60) P(-1.69) G(-1.80) W(-2.82)
Gap (0)
Pos 2 P(4.805) Q(4.611) E(3.636) K(0.898) D(0.854) R(0.717) T(0.174) S(-0.07)   N(-0.07) H(-0.10) M(-0.33) A(-1) Y(-
1.26) G(-2) V(-2.15) L(-2.23) W(-2.26) I(-3) F(-3.07) C(-3.15)
Gap (0)
Pos 3 C(6.803) E(4.595) A(2.524) Q(1.612) D(1.601) K(0.641) S(0.271) T(-0.23)   N(-0.28) R(-0.28) H(-0.35) P(-1.10)
G(-1.14) M(-1.54) I(-1.85) L(-1.85) Y(-2) V(-2.26) F(-2.54) W(-2.82)
Gap (0)
Pos 4 C(6.802) E(3.910) T(3.204) D(1.302) Q(1.069) S(0.458) K(0.304) P(0.289)   G(0.230) N(-0.24) H(-0.24) R(-0.68)
A(-0.92) M(-1.38) Y(-2.11) I(-2.14) L(-2.14) V(-2.14) F(-2.38) W(-2.92)
//

===============================
 SLIM 201
===============================
ID           MATH.clust.0.2.2
Center             2foo_AB_0
AvSimToCtr 0.574
AvRMSDToCtr 0.603 A
Size         3
NumDistinct 4
FracDDI            0
FracPeptides       0.75
FracIntra    0
Species            HOMO SAPIENS (1)
Conservation       1

Members
      2f1x_BA_0 2foj_AB_0 2fop_AB_0

Peptides
      2foo-B 2foj-B 2fop-B

PartnerDomains
Dist Members Intf   Alignment
      2foo_AB_0     E     P      G   G      S     R
      2f1x_BA_0           P      G   G      S
      2foj_AB_0     R     A      H   S      S
      2fop_AB_0     K     P      S   S      S

Dist Members ResidueID Alignment
      2foo_AB_0   358   359   360    361    362   363
      2f1x_BA_0         200   201    202    203
      2foj_AB_0   363   364   365    366    367
      2fop_AB_0   143   144   145    146    147

Alignment Occupancy       0.75   1   1      1     1     0.25
Gap in betw Columns       0      0   0      0

SLIM   RegEx        [KRE][PA][GSH][SG]S
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 19.7979664689601
SLIM   I=181997 Im=7234 Id=454 Idm=20
SLIM   PSSM p-value 0.0817613321436387

PSSM Listing
Pos 0 K(3.679) R(3.668) E(3.638) Q(1.165) D(0.679) N(-0.28) S(-0.52) T(-0.52) H(-0.52) A(-1.28) P(-1.52) M(-1.52)
G(-2.28) Y(-2.28) L(-2.52) I(-3.28) V(-3.28) F(-3.28) W(-3.28) C(-3.52)
Gap (0)
Pos 1 P(6.712) A(2.633) T(0.756) S(-0.04) N(-1) E(-1) Q(-1) K(-1) G(-1.04) D(-1.17) C(-1.24) R(-1.64) M(-1.64) H(-2)
V(-2) I(-2.04) L(-2.04) Y(-2.64) F(-3.04) W(-3.64)
Gap (0)
Pos 2 H(6.613) G(5.308) S(2.656) T(0.827) Y(0.645) N(0.355) A(0.193) D(0.107) E(-0.56) Q(-0.56) V(-0.56) R(-0.89)
K(-0.89) P(-1.64) M(-1.89) F(-1.89) C(-2.04) W(-2.17) I(-2.89) L(-2.89)
Gap (0)
Pos 3 G(5.309) S(3.325) T(1) A(0.620) N(0.355) D(-0.37) E(-0.56) Q(-0.56) K(-0.56) V(-0.56) P(-1.37) H(-1.37) R(-
1.37) C(-1.56) M(-1.56) F(-2.37) Y(-2.37) W(-2.37) I(-2.56) L(-2.56)
Gap (0)
Pos 4 S(4) T(1) A(1) N(1) G(0) D(0) E(0) Q(0) K(0) C(-1) P(-1) H(-1) R(-1) M(-1) I(-2) L(-2) V(-2) F(-2) Y(-2) W(-3)
//

===============================
 SLIM 202
===============================
ID          MHC_I.clust.0.15.16
Center            2f54_AD_0
AvSimToCtr 0.542
AvRMSDToCtr 0.727 A
Size        6
NumDistinct 4
FracDDI             0.5
FracPeptides        0
FracIntra    0
Species             HOMO SAPIENS (4)
Conservation        1

Members
      2bnq_AD_0 2bnr_AD_0 2f54_FK_0 2f53_AD_0 2p5e_AD_0 2pye_AD_0

Peptides

PartnerDomains
      ig (2f54_AD_0,2pye_AD_0)
      V-set (2f54_AD_0,2pye_AD_0)

Dist Members Intf   Alignment
      2f54_AD_0     Y     Q     S      S     Q    G     G     S     Y
      2f53_AD_0     Y           F      W     Q          G     S     Y
      2p5e_AD_0     Y                  W          D     G     T     Y
      2pye_AD_0     Y     Q            S                G     T     Y

Dist Members ResidueID Alignment
      2f54_AD_0   30    50    51       52    53   96    97    98    99
      2f53_AD_0   30          51       52    53         97    98    99
      2p5e_AD_0   31                   53         97    98    99    100
      2pye_AD_0   31    51             53               98    99    100

Alignment Occupancy       1     0.5    0.5   1    0.5   0.5   1     1     1
Gap in betw Columns       19    0      0     0    42    0     0     0

SLIM   RegEx        Q[FS][SW]Q
SLIM   Coverage           0.75
SLIM   PSSM Match Cutoff 15.5828522803024
SLIM   I=181997 Im=6564 Id=1905 Idm=20
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Q(4.306) E(1.306) R(0.306) K(0.306) S(-0.69) T(-0.69) N(-0.69) D(-0.69) H(-0.69) M(-0.69) P(-1.69) A(-1.69)
Y(-1.69) G(-2.69) L(-2.69) V(-2.69) W(-2.69) C(-3.69) I(-3.69) F(-3.69)
Gap (0)
Pos 1 F(4.614) S(2.616) Y(1.620) T(-0.33) A(-0.33) N(-0.36) W(-0.36) M(-1.07) I(-1.25) L(-1.25) G(-1.33) D(-1.33)
E(-1.33) Q(-1.33) K(-1.33) H(-1.69) C(-2.07) V(-2.07) R(-2.25) P(-2.33)
Gap (0)
Pos 2 W(10.30) S(3.307) Y(1.325) F(0.355) T(0.325) A(0.325) N(0.313) G(-0.56) Q(-0.56) E(-0.64) K(-0.64) D(-0.67)
M(-1) C(-1.37) H(-1.37) R(-1.56) P(-1.64) L(-2) I(-2.37) V(-2.37)
Gap (0)
Pos 3 Q(4.306) E(1.306) R(0.306) K(0.306) S(-0.69) T(-0.69) N(-0.69) D(-0.69) H(-0.69) M(-0.69) P(-1.69) A(-1.69)
Y(-1.69) G(-2.69) L(-2.69) V(-2.69) W(-2.69) C(-3.69) I(-3.69) F(-3.69)
//

===============================
 SLIM 203
===============================
ID           MHC_I.clust.0.15.7
Center             1lp9_AF_0
AvSimToCtr 0.471
AvRMSDToCtr 1.341 A
Size         12
NumDistinct 4
FracDDI            1
FracPeptides       0
FracIntra    0
Species            MUS MUSCULUS (3), HOMO SAPIENS (1)
Conservation       0.75

Members
      1kj2_HB_0 1kj2_IE_0 2jcc_AF_0 1lp9_HM_0 2uwe_HM_0 2jcc_HM_0 2j8u_AF_0 2j8u_HM_0 2nx5_AE_0 2nx5_FJ_0
      2nx5_QU_0 2nx5_KP_0

Peptides

PartnerDomains
      V-set (1lp9_AF_0,1kj2_HB_0,1kj2_IE_0,2nx5_AE_0)
      ig (1lp9_AF_0,2nx5_AE_0)

Dist Members Intf   Alignment
      1lp9_AF_0     D     Y     Y   Y     V     S       E     W     V      Y
      1kj2_HB_0     P     W         R     S                   A            T
      1kj2_IE_0     P     W         R     S                   A     W
      2nx5_AE_0     R     Y     Y   Y           D       D                  Q

Dist Members ResidueID Alignment
      1lp9_AF_0   30    31    48    50    51    54      56    97    98     100
      1kj2_HB_0   30    31          50    51                  96           105
      1kj2_IE_0   30    31          50    51                  97    100
      2nx5_AE_0   30    31    48    50          54      56                 101

Alignment Occupancy       1     1   0.5   1     0.75    0.5   0.5   0.75   0.5   0.75
Gap in betw Columns       0       16      1     0       2     1       39      0,2   1

SLIM   RegEx        Y.[RY][SV]..[SD].[DE]
SLIM   Coverage           0.5
SLIM   PSSM Match Cutoff 17.4807433624019
SLIM   I=181997 Im=6487 Id=1905 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 Y(6.306) F(2.306) H(1.306) W(1.306) Q(-1.69) M(-1.69) I(-1.69) L(-1.69)               V(-1.69) C(-2.69) S(-2.69) T(-2.69)
A(-2.69) N(-2.69) E(-2.69) R(-2.69) K(-2.69) P(-3.69) G(-3.69) D(-3.69)
Gap (1)
Pos 1 Y(6.306) R(4.307) F(2.309) H(1.433) K(1.325) W(1.313) Q(0.433) N(-0.56)               E(-0.56) M(-1) S(-1.37) T(-1.37) A(-
1.37) L(-1.37) I(-1.56) V(-1.56) C(-2.37) P(-2.37) G(-2.37) D(-2.37)
Gap (0)
Pos 2 S(3.308) V(2.618) I(1.627) A(0.475) T(0.331) N(0.315) M(-0.14) L(-0.29)               E(-0.62) Q(-0.62) K(-0.62) G(-0.66)
D(-0.66) C(-1.28) P(-1.52) H(-1.62) R(-1.62) F(-1.83) Y(-1.83) W(-3.28)
Gap (2)
Pos 3 D(4.616) S(2.631) E(0.740) T(0.306) N(0.306) A(-0.33) Q(-0.69) G(-1.07)               K(-1.07) P(-1.69) H(-1.69) R(-2.07)
C(-2.25) M(-2.25) I(-3.07) V(-3.07) F(-3.07) Y(-3.07) L(-3.25) W(-4.07)
Gap (1)
Pos 4 D(4.631) E(3.662) Q(0.740) T(-0.07) N(-0.07) K(-0.25) S(-0.69) H(-1.07)               R(-1.25) P(-1.69) A(-2.07) G(-2.07)
M(-3.07) Y(-3.07) I(-3.69) V(-3.69) F(-3.69) C(-4.07) L(-4.07) W(-4.07)
//

===============================
 SLIM 204
===============================
ID           MHC_I.clust.0.2.0
Center             1tvb_AB_0
AvSimToCtr 0.587
AvRMSDToCtr 0.586 A
Size         431
NumDistinct 25
FracDDI            0.8
FracPeptides       0
FracIntra    0
Species            MUS MUSCULUS (18), RATTUS NORVEGICUS (4), GALLUS GALLUS (2), HOMO SAPIENS (1)
Conservation       0.72

Members
      1a1n_AB_0   1e27_AB_0   3bw9_AB_0   1xh3_AB_0   1zsd_AB_0   2nw3_AB_0   1zhk_AB_0   2fyy_AB_0   2fz3_AB_0   2axf_AB_0
      2axg_AB_0   2cik_AB_0   2h6p_AB_0   1zhl_AB_0   3bwa_AB_0   2ak4_AB_0   2ak4_FG_0   2ak4_QR_0   2ak4_KL_0   2bvo_AB_0
      2hjl_AB_0   2hjk_AB_0   2bvq_AB_0   1xr8_AB_0   3c9n_AB_0   1xr9_AB_0   1a1o_AB_0   1m6o_AB_0   3dx6_AB_0   1n2r_AB_0
      1syv_AB_0   3dx7_AB_0   2rfx_AB_0   2nx5_AB_0   2nx5_QR_0   1agb_AB_0   1agc_AB_0   1agd_AB_0   1age_AB_0   1agf_AB_0
      1sys_AB_0   3dx8_AB_0   1e28_AB_0   1cg9_AB_0   1zvs_AB_0   1zvs_DE_0   1q94_AB_0   1q94_DE_0   1tmc_AB_0   2hla_AB_0
      1akj_AB_0   1i4f_AB_0   1bd2_AB_0   1hsb_AB_0   1s8d_AB_0   1t1w_AB_0   1t20_AB_0   1t1x_AB_0   1t21_AB_0   1t1y_AB_0
      1t22_AB_0   1t1z_AB_0   1x7q_AB_0   2hn7_AB_0   3gsw_AB_0   3d25_AB_0   3ft3_AB_0   3ft4_AB_0   3fqn_AB_0   3fqr_AB_0
      3fqw_AB_0   3fqx_AB_0   3fqt_AB_0   3fqu_AB_0   3ft2_AB_0   3bhb_AB_0   3gso_AB_0   3gsq_AB_0   3gsx_AB_0   3gsr_AB_0
      3gsu_AB_0   3gsv_AB_0   1qew_AB_0   3hg1_AB_0   1s9w_AB_0   1s9y_AB_0   1s9x_AB_0   1w72_AB_0   3bo8_AB_0   2f53_AB_0
      2f54_AB_0   2f54_FG_0   1w72_DE_0   1b0g_AB_0   1b0g_DE_0   1i7t_AB_0   1i7t_DE_0   1duy_AB_0   2av1_AB_0   2git_AB_0
      2av7_AB_0   1duz_AB_0   1hhk_AB_0   2clr_AB_0   2clr_DE_0   1im3_AB_0   1im3_EF_0   1im3_IJ_0   1duy_DE_0   1hhk_DE_0
      1duz_DE_0   2av1_DE_0   2git_DE_0   2av7_DE_0   2v2w_DE_0   2v2x_DE_0   1i7u_AB_0   1i7u_DE_0   2jcc_AB_0   1lp9_HI_0
      2jcc_HI_0   1hhi_AB_0   1hhi_DE_0   1oga_AB_0   2vll_AB_0   2vll_DE_0   2uwe_AB_0   1i7r_AB_0   1i7r_DE_0   1eey_AB_0
      1eez_DE_0   1eez_AB_0   1qr1_AB_0   1qr1_DE_0   1i1f_AB_0   1i1f_DE_0   1i1y_AB_0   1i1y_DE_0   1jf1_AB_0   1jht_AB_0
      2bnq_AB_0   2bnr_AB_0   2v2w_AB_0   2v2x_AB_0   3giv_AB_0   3giv_DE_0   2gt9_AB_0   2gtw_AB_0   2gtz_AB_0   2guo_DE_0
      2guo_AB_0   1tvh_AB_0   1tvb_DE_0   1tvh_DE_0   2gt9_DE_0   2gtw_DE_0   2gtz_DE_0   1hhg_DE_0   1hhj_AB_0   1hhj_DE_0
      1vgk_AB_0   3bxn_AB_0   2vlk_AB_0   3bvn_DE_0   2bck_AB_0   2bck_DE_0   2j8u_AB_0   2j8u_HI_0   2p5w_AB_0   2pye_AB_0
      3bgm_AB_0   3bh9_AB_0   3bh8_AB_0   3gjf_AB_0   3gjf_DE_0   3hae_AB_0   3hae_PQ_0   3hae_DE_0   3hae_JK_0   3gsn_HL_0
      3hla_AB_0   1ao7_AB_0   1qrn_AB_0   1qsf_AB_0   1qse_AB_0   2gj6_AB_0   3d3v_AB_0   3d39_AB_0   1b0r_AB_0   1qvo_AB_0
      1qvo_DE_0   1hsa_AB_0   1hsa_DE_0   1jgd_AB_0   1jge_AB_0   1w0v_AB_0   1w0w_AB_0   3b3i_AB_0   3b6s_AB_0   1k5n_AB_0
      3bp7_AB_0   3bp4_AB_0   2bsr_AB_0   2bss_AB_0   2bst_AB_0   3d18_AB_0   1of2_AB_0   1ogt_AB_0   1uxs_AB_0   2a83_AB_0
      3czf_AB_0   1uxw_AB_0   3hcv_AB_0   2c7u_AB_0   2c7u_DE_0   1kpr_AB_0   1mhe_AB_0   1mhe_CD_0   3bze_AB_0   3bze_EF_0
      3bzf_AB_0   3bzf_CD_0   3bze_CD_0   3bze_GH_0   1kpr_CD_0   1im9_AB_0   1im9_EF_0   1qqd_AB_0   2vlj_AB_0   2vlr_AB_0
      2vlr_FG_0   1ed3_AB_0   1k8d_AB_0   3e6f_AB_0   3e6h_AB_0   2fwo_AB_0   1r3h_AB_0   1r3h_EF_0   1r3h_CD_0   1r3h_GH_0
      2nx5_KL_0   1hoc_AB_0   1mhc_AB_0   1mhc_DE_0   1zt1_AB_0   1cd1_AB_0   1cd1_CD_0   1z5l_AB_0   1z5l_CD_0   2fik_AB_0
      2gaz_AB_0   2akr_CD_0   2q7y_AB_0   2q7y_CD_0   1zhn_AB_0   2akr_AB_0   3he7_AB_0   3he6_AB_0   1zt4_CD_0   3huj_AB_0
      3huj_CD_0   1a6z_AB_0   1a6z_CD_0   1de4_AB_0   1de4_GH_0   1de4_DE_0   1s7v_AB_0   1s7v_DE_0   1zt7_AB_0   1zt7_CD_0
      1onq_CD_0   1xz0_AB_0   1xz0_CD_0   1gzp_AB_0   1gzq_AB_0   2h26_AB_0   1exu_AB_0   3fru_AB_0   3fru_EF_0   3bev_AB_0
      3bew_AB_0   3bew_DE_0   1bii_AB_0   1kjv_AB_0   1qo3_AB_0   3dmm_AB_0   1bz9_AB_0   1jpg_AB_0   1ffn_AB_0   1ffo_AB_0
      1ffo_DE_0   3cpl_AB_0   3cpl_CD_0   1jpf_AB_0   1wby_AB_0   1wbx_AB_0   1yn6_AB_0   1yn7_AB_0   2zol_AB_0   2zol_CD_0
      2ve6_AB_0   2ve6_JK_0   1fg2_AB_0   1n5a_AB_0   1fg2_JK_0   1n5a_DE_0   1n5a_JK_0   1zhb_AB_0   1zhb_DE_0   1zhb_JK_0
      1s7u_AB_0   1s7w_AB_0   1s7x_AB_0   1s7u_DE_0   1s7w_DE_0   1s7x_DE_0   1s7u_JK_0   1s7x_GH_0   3ch1_AB_0   3ch1_DE_0
      3ch1_GH_0   3cch_DE_0   3cch_JK_0   1inq_AB_0   1juf_AB_0   3cc5_AB_0   3cc5_DE_0   2zok_AB_0   2zok_EF_0   2zok_CD_0
      2zok_GH_0   1n5a_GH_0   1zhb_GH_0   1s7u_GH_0   1s7w_JK_0   1s7x_JK_0   1n3n_AB_0   1n3n_CD_0   1n3n_EF_0   1fo0_HL_0
      1kj2_HL_0   1kj3_HL_0   1kj3_IM_0   1rjy_AB_0   1rjy_DE_0   1t0m_AB_0   1t0n_AB_0   1t0n_DE_0   2clz_AB_0   1mwa_HL_0
      1wbz_AB_0   1wbz_CD_0   1nan_HP_0   2zsv_AB_0   1nan_LI_0   3cvh_AB_0   1nam_HL_0   2zsw_AB_0   2zsw_GH_0   2zsw_CD_0
      2zsw_EF_0   1rjz_AB_0   1rjz_DE_0   2ol3_HL_0   3cvh_MN_0   2f74_AB_0   2f74_DE_0   1ffp_AB_0   1ffp_DE_0   1ed3_DE_0
      1kjm_AB_0   1ce6_AB_0   1qlf_AB_0   2cii_AB_0   1mi5_AB_0   3buy_AB_0   1kj2_IM_0   1p4l_AB_0   3c8k_AB_0   1bqh_AB_0
      1bqh_DE_0   1g6r_HL_0   1g6r_IM_0   2ckb_HL_0   2ckb_IM_0   1m05_AB_0   1m05_CD_0   3ffc_AB_0   3ffc_FG_0   2mha_AB_0
      2mha_CD_0   1ydp_AB_0   2dyp_AB_0   1ld9_AB_0   1ld9_DE_0   1fzj_AB_0   1g7p_AB_0   1rk1_AB_0   1kpu_AB_0   1lk2_AB_0
      1g7q_AB_0   1leg_AB_0   1fzk_AB_0   1lek_AB_0   1kbg_HL_0   2fo4_AB_0   1s7q_AB_0   1s7s_AB_0   1s7t_AB_0   1s7t_DE_0
      1osz_AB_0   1fzo_AB_0   1kpv_AB_0   1fzm_AB_0   1vac_AB_0   1vad_AB_0   2vaa_AB_0   2vab_AB_0   1n59_AB_0   1n59_CD_0
      1s7r_AB_0   1s7r_DE_0   3ecb_AB_0   1pqz_AB_0   1u58_AB_0   3d2u_AB_0   3d2u_EF_0   1zs8_AB_0   1zs8_CD_0   1zs8_IJ_0
      1zs8_EF_0

Peptides

PartnerDomains
      C1-set
(1tvb_AB_0,1k8d_AB_0,3e6f_AB_0,3e6h_AB_0,2fwo_AB_0,1mhc_AB_0,1mhc_DE_0,1cd1_CD_0,1z5l_AB_0,2fik_AB_0,1s7v_DE_0,1zt7
_AB_0,1zt7_CD_0,3fru_AB_0,3bev_AB_0,3bew_AB_0,1rjy_AB_0,1t0n_DE_0,1rjz_AB_0,2mha_AB_0)

Dist Members Intf   Alignment
      1tvb_AB_0     M     I     R   H     P     S     D     H     S     D     L     S     F     S     K     D     W
      S     F       Y
      1ed3_AB_0           I     K   H           P     Q           S     D     L     S     F           K     D     W
      S     F       Y
      1k8d_AB_0                     H     P     P                       D           S     F                 D     W
      S     F       Y
      3e6f_AB_0                 K   H     P     P                                   S     F     S     K     D     W
      S     F       Y
      3e6h_AB_0           I         H     P     P                       D           S     F           K     D     W
      S     F       Y
      2fwo_AB_0                 K   H     P     P     H     M     S     D     M     S     F     S     K     D     W
            F       Y
      1mhc_AB_0           I         H     P     P     H                 D           S     F     S     K     D     W
      S     F       Y
      1mhc_DE_0           I         H     P     P     H                 D     M     S     F     S     K     D     W
            F       Y
      1cd1_CD_0                     H     P     P     H                 D     M     S     F           K     D     W
      S     F       Y
      1z5l_AB_0                 K   H     P     P     H                 D     M     S     F           K     D     W
      S     F       Y
      2fik_AB_0                 K   H     P     P     H                 D     M     S     F     S     K     D     W
      S     F       Y
      1s7v_DE_0                     H     P     P     H           S     D     M     S     F     S                 W
      S     F       Y
      1zt7_AB_0                     H     P     P           M           D     M     S     F     S                 W
      S     F
      1zt7_CD_0                     H     P     P           M     S     D     M     S     F     S                 W
      S     F
      3fru_AB_0           I         H     P     P     Q                 D     L     S     F                 D     W
            F       Y
      3bev_AB_0                     H     P     P     K                 D     M     S     F                 D     W
      T     F
      3bew_AB_0                     H     P     P     K                       M     S     F           D     D     W
      T     F
      1kjv_AB_0                     H           P     Q                                   F     S                 W
      S     F       Y
      2ve6_AB_0           M         H           P                                         F     S           D     W
      S     F
      1rjy_AB_0     M     I     K   H     P     P                                         F     S     K     D     W
            F       Y
      1t0m_AB_0         I     K    H         P                                  F    S    K    D    W
      S     F     Y
      1t0n_DE_0         I     K    H    P    P                                  F    S    K    D    W
      S     F     Y
      1rjz_AB_0   M     I     K    H    P    P                                  F    S    K         W
      S     F     Y
      1ed3_DE_0               K    H         P    Q                             F    S    K    D    W
      S     F     Y
      2mha_AB_0         I     K    H    P    P                             S    F    S    K         W
      S     F     Y

Dist Members ResidueID Alignment
      1tvb_AB_0   0     1     3    31   32   33   34   51   52   53   54   55   56   57   58   59
      60    61    62    63
      1ed3_AB_0         1     3    31        33   34        52   53   54   55   56        58   59
      60    61    62    63
      1k8d_AB_0                    31   32   33                  53        55   56             59
      60    61    62    63
      3e6f_AB_0               3    31   32   33                            55   56   57   58   59
      60    61    62    63
      3e6h_AB_0         1          31   32   33                  53        55   56        58   59
      60    61    62    63
      2fwo_AB_0               3    31   32   33   34   51   52   53   54   55   56   57   58   59
      60          62    63
      1mhc_AB_0         1          31   32   33   34             53        55   56   57   58   59
      60    61    62    63
      1mhc_DE_0         1          31   32   33   34             53   54   55   56   57   58   59
      60          62    63
      1cd1_CD_0                    31   32   33   34             53   54   55   56        58   59
      60    61    62    63
      1z5l_AB_0               3    31   32   33   34             53   54   55   56        58   59
      60    61    62    63
      2fik_AB_0               3    31   32   33   34             53   54   55   56   57   58   59
      60    61    62    63
      1s7v_DE_0                    31   32   33   34        52   53   54   55   56   57
      60    61    62    63
      1zt7_AB_0                    31   32   33        51        53   54   55   56   57
      60    61    62
      1zt7_CD_0                    31   32   33        51   52   53   54   55   56   57
      60    61    62
      3fru_AB_0         1          31   32   33   34             53   54   55   56             59
      60          62    63
      3bev_AB_0                    30   31   32   33             52   53   54   55             58
      59    60    61
       3bew_AB_0                       30     31   32    33                       53    54     55          57     58
       59    60    61
       1kjv_AB_0                       31          33    34                                    56     57
       60    61    62    63
       2ve6_AB_0         1             31          33                                          56     57          59
       60    61    62
       1rjy_AB_0   0     1      3      31     32   33                                          56     57   58     59
       60          62    63
       1t0m_AB_0         1      3      31          33                                          56     57   58     59
       60    61    62    63
       1t0n_DE_0         1      3      31     32   33                                          56     57   58     59
       60    61    62    63
       1rjz_AB_0   0     1      3      31     32   33                                          56     57   58
       60    61    62    63
       1ed3_DE_0                3      31          33    34                                    56     57   58     59
       60    61    62    63
       2mha_AB_0         1      3      31     32   33                                   55     56     57   58
       60    61    62    63

Alignment Occupancy      0.12   0.48   0.48   1    0.8   1    0.56   0.16   0.2   0.6   0.52   0.72   1    0.68   0.68
      0.76 1      0.84   1      0.8
Gap in betw Columns      0      0      0      18   0     0    0      0      0     0     0      0      0    0

SLIM   RegEx        D[ML]SFS[KD]DW[ST]FY
SLIM   Coverage           1
SLIM   PSSM Match Cutoff 18.992223526479
SLIM   I=181997 Im=6141 Id=1905 Idm=0
SLIM   PSSM p-value 1

PSSM Listing
Pos 0 D(5.489) E(1.489) T(0.489) N(0.489) S(-0.51) Q(-0.51) P(-1.51) G(-1.51)     H(-1.51) K(-1.51) A(-2.51) R(-2.51)
C(-3.51) M(-3.51) I(-3.51) V(-3.51) F(-3.51) Y(-3.51) L(-4.51) W(-4.51)
Gap (0)
Pos 1 M(4.098) L(2.252) V(0.901) I(0.680) F(-0.65) Q(-0.87) C(-1.65) A(-1.65)     Y(-1.65) S(-1.81) T(-1.81) R(-1.81)
K(-1.81) W(-1.81) P(-2.81) N(-2.81) E(-2.81) H(-2.81) G(-3.81) D(-3.81)
Gap (0)
Pos 2 S(3.671) T(0.671) A(0.671) N(0.671) G(-0.32) D(-0.32) E(-0.32) Q(-0.32)     K(-0.32) C(-1.32) P(-1.32) H(-1.32)
R(-1.32) M(-1.32) I(-2.32) L(-2.32) V(-2.32) F(-2.32) Y(-2.32) W(-3.32)
Gap (0)
Pos 3 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3)     N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 4 S(3.614) T(0.614) A(0.614) N(0.614) G(-0.38) D(-0.38) E(-0.38) Q(-0.38)     K(-0.38) C(-1.38) P(-1.38) H(-1.38)
R(-1.38) M(-1.38) I(-2.38) L(-2.38) V(-2.38) F(-2.38) Y(-2.38) W(-3.38)
Gap (0)
Pos 5 K(4.553) D(2.795) R(1.554) E(0.710) Q(0.576) T(-0.28) N(-0.28) S(-0.38) P(-1.38) H(-1.38) A(-1.42) M(-1.43)
G(-2.28) Y(-2.42) L(-2.43) C(-3.38) I(-3.38) V(-3.38) F(-3.38) W(-3.42)
Gap (0)
Pos 6 D(5.725) E(1.725) T(0.725) N(0.725) S(-0.27) Q(-0.27) P(-1.27) G(-1.27) H(-1.27) K(-1.27) A(-2.27) R(-2.27)
C(-3.27) M(-3.27) I(-3.27) V(-3.27) F(-3.27) Y(-3.27) L(-4.27) W(-4.27)
Gap (0)
Pos 7 W(11) Y(2) F(1) M(-1) C(-2) G(-2) Q(-2) H(-2) L(-2) S(-3) T(-3) A(-3) E(-3) R(-3) K(-3) I(-3) V(-3) P(-4) N(-
4) D(-4)
Gap (0)
Pos 8 S(3.730) T(1.861) N(0.763) A(0.739) G(-0.02) D(-0.02) E(-0.17) Q(-0.17) K(-0.17) P(-0.69) H(-1.02) C(-1.17)
R(-1.17) M(-1.17) I(-2.17) L(-2.17) V(-2.17) F(-2.17) Y(-2.17) W(-3.17)
Gap (0)
Pos 9 F(6) Y(3) W(1) M(0) I(0) L(0) H(-1) V(-1) C(-2) S(-2) T(-2) A(-2) G(-3) N(-3) D(-3) E(-3) Q(-3) R(-3) K(-3)
P(-4)
Gap (0)
Pos 10 Y(6.776) F(2.776) H(1.776) W(1.776) Q(-1.22) M(-1.22) I(-1.22) L(-1.22) V(-1.22) C(-2.22) S(-2.22) T(-2.22)
A(-2.22) N(-2.22) E(-2.22) R(-2.22) K(-2.22) P(-3.22) G(-3.22) D(-3.22)
//

===============================
 SLIM 205
===============================
ID           MHC_II_alpha.clust.0.2.1
Center             1kg0_AD_0
AvSimToCtr 0.533
AvRMSDToCtr 0.721 A
Size         66
NumDistinct 32
FracDDI            0
FracPeptides       0.96875
FracIntra    0
Species            HOMO SAPIENS (10), MUS MUSCULUS (1)
Conservation       0.909090909090909

Members
      1a6a_AC_0   1aqd_AC_0   1aqd_GI_0   1aqd_JL_0   1aqd_DF_0   1bx2_AC_0   1bx2_DF_0   2wbj_AD_0   2wbj_EH_0   1d5m_AD_0
      1j8h_AC_0   2seb_AE_0   1d6e_AD_0   1jwm_AC_0   1jws_AC_0   1jwu_AC_0   1pyw_AC_0   1dlh_AC_0   1dlh_DF_0   1fyt_AC_0
      2g9h_AC_0   1hxy_AC_0   1t5w_AC_0   1t5w_DF_0   1t5x_AC_0   2ipk_AC_0   1r5i_AC_0   2oje_AC_0   1r5i_EG_0   2oje_EG_0
      2icw_AC_0   2icw_DF_0   1sje_AC_0   1sjh_AC_0   3c5j_AC_0   1r5v_AE_0   1r5v_CF_0   1r5w_AE_0   1r5w_CF_0   2q6w_AC_0
      2q6w_DF_0   1fv1_AC_0   1fv1_DF_0   1klg_AC_0   1klu_AC_0   2iam_AP_0   2ian_AC_0   2ian_FH_0   2ian_KM_0   2ian_PR_0
      1zgl_AC_0   1zgl_DF_0   1zgl_GI_0   1zgl_JL_0   1iak_AP_0   1k2d_AP_0   1u3h_CP_0   1u3h_GI_0   2pxy_CP_0   2z31_CP_0
      1jk8_AC_0   2nna_AC_0   1muj_AC_0   1s9v_AC_0   1s9v_DF_0   1uvq_AC_0

Peptides
      1kg0-D 1a6a-C 1aqd-C 1aqd-F 1bx2-C 1bx2-F 1d5m-D 2seb-E 1d6e-D 1pyw-C
      1t5w-C 1t5x-C 1sje-C 3c5j-C 1r5v-E 1r5w-E 2q6w-C 1fv1-C 1klg-C 1klu-C
      2iam-P 2ian-H 1zgl-C 1iak-P 1k2d-P 1u3h-P 1jk8-C 2nna-C 1muj-C 1s9v-C
      1uvq-C

PartnerDomains

Dist Members Intf   Alignment
      1kg0_AD_0     P     K     Y   V     K     Q     N     T     L     K     L     A     T
      1a6a_AC_0     S     K     M   R     M     A     T           L     L     M
      1aqd_AC_0           D     W   R     F     L                 Y     H     Q     Y     A
      1aqd_DF_0           D     W   R     F     L     R           Y     H     Q     Y     A
      1bx2_AC_0     P     V     V   H     F     F
      1bx2_DF_0     P     V     V   H     F     F     K                 V
      2wbj_AD_0     A     R     V   H     F     I     S     A     L     H           S
      1d5m_AD_0                     R     A     M           S
      2seb_AE_0     A     Y     M   R     A     D     A     A     A
      1d6e_AD_0                     R           M     A     S
      1pyw_AC_0                 F         K     Q     N     A           A     L
      1t5w_AC_0     A     A     Y   S     D     Q     A     T     P     L     L     L
      1t5x_AC_0     A     A     Y   S     D     Q     A     T     P     L     L     L     S
      1sje_AC_0     P     E     V   I     P     M     F     S     A     L     S
      3c5j_AC_0           V     I   I     L     N     H     P     G     Q     I
      1r5v_AE_0           L     I   A     Y     P     K     A     A     T     K
      1r5w_AE_0           L     I   A     Y     F     K     A     A     T     K
      2q6w_AC_0           A     W   R     S     D     E     A     L     P     L
      1fv1_AC_0           F     F   K     N     I     V     T
      1klg_AC_0     E     L     I         I     L     N     A     A     K     V
      1klu_AC_0     E     L     I         T     L     N     A     A     K     V
      2iam_AP_0     E     L     I   G     I     L     N     A     A     K     V
      2ian_FH_0     E     L     I   G     T     L     N     A     A     K     V
      1zgl_AC_0           F     F   K     N     I     V                 R
      1iak_AP_0     S     T     D   Y     G     I     L     Q     I     N     S
      1k2d_AP_0           R     G   G     A     S     Q     Y     R     P     S
      1u3h_CP_0     S     R     G   G     A     S     Q     Y     R     P     S           Q
      1jk8_AC_0           V     E   A     L     Y     L     V     C     G     E
      2nna_AC_0           G     E   G     S     F     Q     P     S     Q     E
      1muj_AC_0     S     K     M   R     M     A     T     P     L     L     M
      1s9v_AC_0     L     Q     P   F     P     Q     P     E     L     P
      1uvq_AC_0                 L   P     S     T     K     V     S     W     A     A     V

Dist Members ResidueID Alignment
      1kg0_AD_0   306   307   308   309   310   311   312   313   314   315   316   317   318
      1a6a_AC_0   89    90    91    92    93    94    95          97    98    99
      1aqd_AC_0         4     5     6     7     8                 11    12    13    14    15
      1aqd_DF_0         4     5     6     7     8     9           11    12    13    14    15
      1bx2_AC_0   87     88     89     90     91     92
      1bx2_DF_0   87     88     89     90     91     92     93                   96
      2wbj_AD_0   3      4      5      6      7      8      9      10     11     12        14
      1d5m_AD_0                        805    806    807           809
      2seb_AE_0   1168   1169   1170   1171   1172   1173   1174   1175   1176
      1d6e_AD_0                        805           807    808    809
      1pyw_AC_0                 1             3      4      5      6             8    9
      1t5w_AC_0   0      1      2      3      4      5      6      7      8      9    10   11
      1t5x_AC_0   0      1      2      3      4      5      6      7      8      9    10   11    12
      1sje_AC_0   34     35     36     37     38     39     40     41     42     43   44
      3c5j_AC_0          2      3      4      5      6      7      8      9      10   11
      1r5v_AE_0          4      5      6      7      8      9      10     11     12   13
      1r5w_AE_0          4      5      6      7      8      9      10     11     12   13
      2q6w_AC_0          24     25     26     27     28     29     30     31     32   33
      1fv1_AC_0          91     92     93     94     95     96     97
      1klg_AC_0   24     25     26            28     29     30     31     32     33   34
      1klu_AC_0   24     25     26            28     29     30     31     32     33   34
      2iam_AP_0   24     25     26     27     28     29     30     31     32     33   34
      2ian_FH_0   24     25     26     27     28     29     30     31     32     33   34
      1zgl_AC_0          3      4      5      6      7      8                    11
      1iak_AP_0   50     51     52     53     54     55     56     57     58     59   60
      1k2d_AP_0          -2     -1     0      1      2      3      4      5      6    7
      1u3h_CP_0   -3     -2     -1     0      1      2      3      4      5      6    7          8
      1jk8_AC_0          2      3      4      5      6      7      8      9      10   11
      2nna_AC_0          2      3      4      5      6      7      8      9      10   11
      1muj_AC_0   89     90     91     92     93     94     95     96     97     98   99
      1s9v_AC_0   1      2      3      4      5      6      7      8      9      10
      1uvq_AC_0                 3      4      5      6      7      8      9      10   11   12    13

Alignment Occupancy      0.531 0.875 0.937 0.906 0.968 1           0.906 0.812 0.781 0.843 0.718 0.218 0.187
Gap in betw Columns      0     0     0     0     0     0           0     0     0     0

SLIM RegEx
      [ASPEL][LVAKRFDTEYQG][IVFWYMEGPDL][RGAHSKIFPYV][FASTNPKYMDILG][LQFIMSADTNPY][NAKQTVLFSPEHR][ATSPYVEQ][ALSPYRC
IG][KLPHTQAWNVRG][LSVKEQMAI]
SLIM Coverage           0.96875
SLIM PSSM Match Cutoff 34.6071036044052
SLIM I=181997 Im=9515 Id=24 Idm=0
SLIM PSSM p-value 1

PSSM Listing
Pos 0 P(4.921) E(2.932) S(1.993) A(1.983) L(0.577) Q(0.135) D(0.106) T(-0.15) V(-0.37) K(-0.57) N(-0.58) M(-1.03)
I(-1.18) G(-1.25) R(-1.43) H(-1.57) C(-1.65) F(-2.60) Y(-2.68) W(-3.68)
Gap (0)
Pos 1 Y(3.575) F(3.262) D(3.244) K(2.702) R(2.695) G(2.553) L(2.372) V(2.369) E(1.754) Q(1.717) A(1.698) I(1.392)
T(0.807) M(0.670) S(-0.38) H(-0.63) N(-0.66) W(-0.77) C(-1.39) P(-1.40)
Gap (0)
Pos 2 W(8.633) Y(4.659) F(3.697) P(3.536) G(3.229) M(2.725) I(2.713) D(2.575) E(2.260) V(2.104) L(1.504) H(-0.15)
Q(-0.37) T(-0.65) A(-0.96) K(-1.23) S(-1.26) C(-1.52) N(-1.52) R(-1.84)
Gap (0)
Pos 3 H(5.634) G(4.147) R(3.631) Y(3.575) P(3.538) F(2.594) K(2.424) A(1.731) I(1.423) S(1.397) V(0.746) Q(0.089)
T(-0.01) N(-0.20) L(-0.38) E(-0.42) M(-0.70) D(-0.76) W(-0.97) C(-1.66)
Gap (0)
Pos 4 Y(4.274) P(4.232) F(4.167) N(3.253) D(3.248) G(2.573) M(2.325) K(2.266) A(1.987) S(1.799) L(1.525) T(1.466)
I(1.459) V(0.470) E(-0.04) W(-0.05) H(-0.31) R(-0.35) Q(-0.46) C(-1.22)
Gap (0)
Pos 5 F(3.941) Y(3.611) P(3.541) D(3.244) Q(3.159) M(2.772) N(2.580) L(2.489) I(2.157) V(1.441) S(1.406) A(1.347)
T(0.891) E(0.595) K(-0.38) W(-0.40) R(-0.50) H(-0.57) G(-1.17) C(-1.26)
Gap (0)
Pos 6 H(4.538) N(4.333) P(3.544) K(2.969) Q(2.705) F(2.546) A(1.969) R(1.818) E(1.805) V(1.557) T(1.418) L(1.313)
S(1.108) I(0.606) D(0.186) Y(0.020) M(-0.06) G(-0.56) C(-1.44) W(-1.98)
Gap (0)
Pos 7 P(4.637) Y(4.229) A(2.861) T(2.018) S(1.859) Q(1.661) E(1.658) V(1.260) I(0.358) F(0.303) D(-0.25) G(-0.25)
H(-0.29) N(-0.50) K(-0.58) W(-0.69) M(-0.82) C(-0.84) L(-1.05) R(-1.09)
Gap (0)
Pos 8 C(5.535) P(4.229) Y(4.229) A(2.640) G(2.560) L(2.362) R(2.245) S(1.439) V(1.378) I(1.173) M(0.502) F(0.422)
K(-0.38) H(-0.50) T(-0.52) W(-0.65) Q(-0.90) N(-0.98) E(-1.33) D(-1.90)
Gap (0)
Pos 9 W(7.534) H(5.633) P(4.922) K(3.169) N(2.583) G(2.558) Q(2.308) L(2.161) R(1.819) V(1.597) T(1.442) A(0.695)
I(0.603) M(0.373) E(0.165) Y(0.063) S(-0.34) D(-0.35) F(-1.14) C(-1.87)
Gap (0)
Pos 10 M(2.398) Q(2.317) V(2.311) E(2.310) K(2.283) L(2.263) S(1.968) I(1.719) A(0.846) R(-0.21) D(-0.37) T(-0.50)
N(-0.57) F(-1.11) C(-1.50) H(-1.50) Y(-1.61) G(-1.63) P(-1.82) W(-2.59)
//

===============================
 SLIM 206
===============================
ID           MHC_II_beta.clust.0.2.1
Center             1t5w_BC_0
AvSimToCtr 0.502
AvRMSDToCtr 0.904 A
Size         81
NumDistinct 37
FracDDI            0
FracPeptides       0.810810810810811
FracIntra    0.135135135135135
Species            HOMO SAPIENS (11), MUS MUSCULUS (4), COLUMBA LIVIA AND MUS MUSCULUS (1), INFLUENZAVIRUS A (1)
Conservation       0.647058823529412
Members
      1a6a_BC_0   1d6e_BD_0   2seb_BE_0   3c5j_BC_0   1d5m_BD_0   1j8h_BC_0   2q6w_BC_0   2q6w_EF_0   1aqd_BC_0   1aqd_EF_0
      1aqd_KL_0   1aqd_HI_0   1dlh_BC_0   1dlh_EF_0   1fyt_BC_0   1jwm_BC_0   1jws_BC_0   1jwu_BC_0   1hxy_BC_0   1kg0_BD_0
      1t5w_EF_0   1t5x_BC_0   2ipk_BC_0   1r5i_BC_0   1r5i_FG_0   2oje_BC_0   2oje_FG_0   2icw_BC_0   2icw_EF_0   2g9h_BC_0
      1klg_BC_0   1klu_BC_0   2iam_BP_0   2ian_BC_0   2ian_GH_0   2ian_LM_0   2ian_QR_0   1pyw_BC_0   1sje_BC_0   1sjh_BC_0
      1bx2_BC_0   1bx2_EF_0   2wbj_BD_0   2wbj_FH_0   1fv1_BC_0   1fv1_EF_0   1i3r_BB_0   1i3r_HH_0   1i3r_DD_0   1i3r_FF_0
      1kt2_BB_0   1kt2_DD_0   1r5v_BE_0   1r5v_DF_0   1ktd_BB_0   1ktd_DD_0   1r5w_BE_0   1r5w_DF_0   1iak_BP_0   1k2d_BP_0
      1u3h_DP_0   1u3h_HI_0   2pxy_DP_0   2z31_DP_0   2p24_BB_0   1jk8_BC_0   2nna_BC_0   1uvq_BC_0   1lnu_BB_0   1lnu_DD_0
      1lnu_FF_0   1lnu_HH_0   3c5z_DD_0   3c5z_HH_0   1muj_BC_0   1s9v_BC_0   1s9v_EF_0   1zgl_BC_0   1zgl_EF_0   1zgl_HI_0
      1zgl_KL_0

Peptides
      1t5w-C 1a6a-C 1d6e-D 2seb-E 3c5j-C 1d5m-D 1j8h-C 2q6w-C 1aqd-C 1klg-C
      1klu-C 2iam-P 2ian-H 1pyw-C 1sje-C 1sjh-C 1bx2-C 1bx2-F 1fv1-C 1r5v-E
      1r5w-E 1iak-P 1k2d-P 1u3h-P 1jk8-C 2nna-C 1uvq-C 1muj-C 1s9v-C 1zgl-C

PartnerDomains

Dist Members Intf   Alignment
      1t5w_BC_0     A     A       Y       S     D       Q     A       T       P     L       L     L
      1a6a_BC_0     S     K       M       R     M       A     T       P       L     L       M
      1d6e_BD_0                           R             M     A       S
      2seb_BE_0     A     Y       M       R     A       D     A       A
      3c5j_BC_0           V       I       I     L       N     H       P       G     Q       I
      1d5m_BD_0                           R     A       M             S
      1j8h_BC_0     P     K       Y       V     K       Q     N       T       L     K       L     A
      2q6w_BC_0           A       W       R     S       D     E       A       L     P       L
      1aqd_BC_0           D       W       R     F       L                     Y     H       Q     Y
      1klg_BC_0           L       I             I       L     N       A       A     K       V
      1klu_BC_0     E     L       I             T       L     N       A       A     K       V
      2iam_BP_0     E     L       I             I       L     N       A       A     K       V
      2ian_GH_0     E     L       I       G     T       L     N       A       A     K       V
      1pyw_BC_0                   F       V     K       Q     N       A             A       L
      1sje_BC_0     P     E       V       I     P       M     F       S       A     L
      1sjh_BC_0     P     E       V       I     P       M     F       S       A     L       S
      1bx2_BC_0     P     V       V       H     F       F     K                     V
      1bx2_EF_0     P     V       V       H     F       F     K       N             V
      2wbj_BD_0     A     R       V       H     F       I     S       A       L     H             S
      2wbj_FH_0     A     R       V       H     F       I     S       A       L     H       G     S
      1fv1_BC_0     H     F       F       K     N       I     V       T
      1i3r_BB_0     K     V       I       T     A       F             E       G     L       K
      1kt2_BB_0     D     L       I       A     Y       L     K       Q       A     T       K
      1r5v_BE_0     D     L       I       A     Y       P     K               A     T       K
      1ktd_BB_0     D     L       I       A     Y       L     K       Q       A     S       A
     1r5w_BE_0   D     L     I      A      Y      F      K             A     T     K
     1iak_BP_0   S     T     D      Y      G      I      L      Q      I     N     S
     1k2d_BP_0         R     G      G      A      S      Q      Y      R     P     S
     1u3h_DP_0   S     R     G      G      A      S      Q      Y      R     P     S
     2p24_BB_0   Y     G     G      R      A      S      D      Y      K     S     A
     1jk8_BC_0         V     E      A      L      Y      L      V      C     G     E
     2nna_BC_0         G     E      G      S      F      Q      P      S     Q     E
     1uvq_BC_0