Excel Gmp Worksheet - Excel by fvw14912

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									              Key to the data presented in Supplementary Table 1:

Excel Worksheet Tab     Description
                        Experimental sources and criteria for determining FC- or FCM-
validation-criteria
                        specific expression of a given gene.
                        Detailed information for validated FC- specific genes. All involved
validated-FCs           probe sets are shown (to obtain the single highest-ranking probe set
                        per gene, filter for column H == "Y").
                        Detailed information for validated FCM- specific genes. All involved
validated-FCMs          probe sets are shown (to obtain the single highest-ranking probe set
                        per gene, filter for column H == "Y").
                        Detailed information for validated FC+FCM genes. All involved probe
validated-FC+FCMs       sets are shown (to obtain the single highest-ranking probe set per
                        gene, filter for column H == "Y").
                        335 mesodermally-enriched genes, with in situ and RNAi results if
meso-enrich-validations
                        available.
baylies                 in situ results to verify predictions from Artero et al.




Abbreviations:
amnios.                   amnioserosa
CNS                       central nervous system
FC                        founder cell
FCM                       fusion competent myoblast
meso                      mesoderm
N/Y/---/?                 No/ Yes/ No data/ Ambiguous data
PNS                       peripheral nervous system
prim.                     primordium
SG                        salivary glands
SM                        somatic musculature
st                        stage
VM                        visceral musculature
                                Criteria for calling FC-, FCM- and FC+FCM- specific genes

                                                                 In situ in at least one informative
Gene Candidate Sources:                Wild type in situ:        genotype background:
1. Literature: Documentation
of FC- or FCM- or FC+FCM-
     specific expression.
  Independent validation of                                        In situ hybridization in Ras gof
expression profiling data was                                           and Dl lof backgrounds
                                                                     showed expression patterns
                                                                    consistent with FCs, FCMs or
  2. Mesodermally-enriched            In situ hybridization in           FCs+FCMs. If gene
 gene list (the top 335 probe           wild type embryos              candidate has FCM
  sets in the GFP+ vs GFP-            showed expression in                expression, in situ
comparison presented here).               FCs, FCMs or                hybridization in lmd


 3. Top-ranking T-score in           In situ hybridization in      In situ hybridization in Ras gof
   either the FC (top 394              wild type embryos                 background showed
  probe sets) or FCM (top            showed expression in           expression pattern consistent
 284 probe sets) weighted                FCs, FCMs or                     with FCs, FCMs or
       meta-analysis.
    specific genes

 at least one informative
e background:



 hybridization in Ras gof
     lof backgrounds
 ed expression patterns
stent with FCs, FCMs or
                            Validated FC
 Cs+FCMs. If gene
                              FCM or
ndidate has FCM-like
                             FC+FCM
expression, in situ
                                gene.
 dization in lmd lof was


 hybridization in Ras gof
ackground showed
ssion pattern consistent
with FCs, FCMs or
                                                                           Is highest-
                                                                           ranking     Meta-      Performe
                                       Truncated    Truncated Truncated    probe set analysis     d In Situ
Affymetrix                             weighting    weighting weighting    for this    training   Hybridizat
ID         FBGn     Symbol    Name     rank         tstat     q-value      gene?       set?       ion?
                    CG17492
153089_at FBgn0032742         CG17492           1    1.74E+01          0   Y           Y          Y
                    CG32096
152637_at FBgn0041096         rols              2    1.74E+01          0   Y           Y          Y
                    CG12908
154737_at FBgn0033509         CG12908           3    1.68E+01          0   Y           Y          Y
                    CG3758
143219_at FBgn0001981         esg               4    1.67E+01          0   Y           N          Y
                    CG14207
154791_at FBgn0031037         CG14207           6    1.55E+01          0   Y           Y          Y
                    CG13425
155123_at FBgn0015907         bl                7    1.55E+01          0   Y           N          Y
                    CG3365
152656_at FBgn0020304         drongo            8    1.54E+01          0   Y           Y          Y
                    CG7223
154602_at FBgn0010389         htl              10    1.49E+01          0   Y           Y          Y
                    CG10275
154571_at FBgn0032683         CG10275          11    1.48E+01          0   Y           Y          Y
                    CG7867
151620_at FBgn0013718         nuf              12    1.48E+01          0   Y           Y          Y
                    CG10108
143714_at FBgn0013725         phyl             13    1.42E+01          0   Y           N          Y
                    CG1921
143757_at FBgn0014388         sty              15    1.37E+01          0   Y           Y          Y
                    CG10250
143280_at FBgn0002922         nau              16    1.36E+01          0   Y           Y          Y
                    CG6531
145316_at FBgn0030941         wgn              17    1.32E+01          0   Y           N          Y
                    CG11202
143950_at FBgn0021767         org-1            19    1.31E+01          0   Y           N          Y
                    lola
143561_at FBgn0005630         lola             20    1.31E+01          0   Y           N          Y
                    CG3340
143209_at FBgn0001325         Kr               21    1.31E+01          0   Y           Y          Y
142182_s_at         CG33103
           FBgn0003137        Ppn              23    1.27E+01          0   Y           N          Y
                    CG8147
154821_at FBgn0037699         CG8147           28    1.25E+01          0   Y           Y          Y
                    CG3839
143237_at FBgn0002561         l(1)sc           30    1.22E+01          0   Y           Y          Y
                    CG31043
153225_at FBgn0026239         gukh             31    1.21E+01          0   Y           N          Y
                    CG31317
142813_at FBgn0020299         stumps           36    1.16E+01          0   Y           Y          Y
                    CG4722
155099_at FBgn0000180         bib              38    1.14E+01          0   Y           N          Y
                    CG6113
146165_at FBgn0032264         CG6113           39    1.13E+01          0   Y           N          Y
                    CG18250
147277_at FBgn0034072         Dg               40    1.12E+01          0   Y           N          Y
                    CG9786
143188_at FBgn0001180         hb               42    1.11E+01          0   Y           N          Y
                    CG3956
143356_at FBgn0003448         sna              43    1.11E+01          0   Y           Y          Y
                    CG17724
141244_at FBgn0033802         CG17724          47    1.09E+01          0   Y           N          Y
                    CG6234
141352_at FBgn0038071         CG6234           48    1.09E+01          0   Y           N          Y
                    CG4444
141467_at FBgn0003175         px               50    1.08E+01          0   Y           N          Y
                    CG7958
153892_at FBgn0036103         CG7958           54    1.06E+01          0   Y           N          Y
                    CG3779
154346_at FBgn0002973         numb             55    1.05E+01          0   Y           N          Y
                    CG1225
142517_at FBgn0035128         RhoGEF3          56    1.05E+01          0   Y           N          Y
                    CG3886
143558_at FBgn0005624         Psc              59    1.02E+01          0   Y           N          Y
                    CG17871
148788_at FBgn0036474         Or71a            61    1.02E+01          0   Y           N          Y
                    CG31794
141605_at FBgn0041789         Pax              68    9.94E+00          0   Y           Y          Y
                    CG10197
143207_at FBgn0001319         kn               74    9.71E+00          0   Y           Y          Y
                    CG31151
142599_at FBgn0051151         CG31151          82    9.18E+00          0   Y           N          Y
                    CG5295
154058_at FBgn0036449         CG5295           83    9.15E+00          0   Y           N          Y
                    CG4937
141734_at FBgn0030808         RhoGAP15B        86    9.00E+00          0   Y           N          Y
                    CG3166
143073_at FBgn0000097         aop              88    8.77E+00          0   Y           N          Y
                    CG3653
144253_at FBgn0028369         kirre            91    8.74E+00          0   Y           Y          Y
                    CG14622
144082_at FBgn0025641         EG:114D9.2       93    8.70E+00          0   Y           N          Y
                    CG17342
142794_at FBgn0017581         Lk6              94    8.67E+00          0   Y           N          Y
                    CG1447
143946_at FBgn0020912         Ptx1             97    8.49E+00          0   Y           N          Y
                    CG9520
142643_at FBgn0032078         CG9520           98    8.45E+00          0   Y           N          Y
                   CG3619
153950_at FBgn0000463        Dl          99   8.45E+00   0   Y   Y   Y
                   CG3048
153984_at FBgn0026319        Traf1      100   8.44E+00   0   Y   N   Y
                   CG7004
141383_at FBgn0004373        fwd        105   8.25E+00   0   Y   N   Y
                   CG2328
143153_at FBgn0000606        eve        108   8.16E+00   0   Y   Y   Y
                   CG4944
144115_at FBgn0026084        cib        117   7.96E+00   0   Y   N   Y
                   CG32560
145261_at FBgn0052560        CG32560    122   7.82E+00   0   Y   N   Y
                   CG6682
143743_at FBgn0014015        Rapgap1    126   7.77E+00   0   Y   N   Y
                   CG6534
143284_at FBgn0002941        slou       127   7.77E+00   0   Y   Y   Y
                   CG8581
143665_at FBgn0011592        fra        136   7.58E+00   0   Y   N   Y
                   CG8580
154373_at FBgn0035773        CG8580     142   7.48E+00   0   Y   N   Y
                   CG5522
154285_at FBgn0034158        CG5522     147   7.34E+00   0   Y   N   Y
                   CG6520
147366_at FBgn0034224        CG6520     149   7.32E+00   0   Y   N   Y
                   CG15319
154642_at FBgn0015624        nej        150   7.31E+00   0   Y   N   Y
                   CG7250
153641_at FBgn0036494        Toll-6     151   7.30E+00   0   Y   N   Y
                   CG8780
149068_at FBgn0036899        CG8780     154   7.18E+00   0   Y   N   Y
                   CG7892
154754_at FBgn0011817        nmo        157   7.15E+00   0   Y   N   Y
                   CG17952
154846_at FBgn0034657        CG17952    158   7.15E+00   0   Y   N   Y
                   CG9461
153116_at FBgn0037760        CG9461     159   7.14E+00   0   Y   N   Y
                   CG7471
153325_at FBgn0015805        Rpd3       164   7.06E+00   0   Y   N   Y
                   CG4029
154293_at FBgn0015396        jumu       168   7.00E+00   0   Y   N   Y
                   CG9952
147701_at FBgn0020257        ppa        169   6.98E+00   0   Y   N   Y
                   CG10619
142284_at FBgn0003896        tup        175   6.93E+00   0   Y   N   Y
                   CG11100
143038_at FBgn0037207        CG11100    179   6.87E+00   0   Y   Y   Y
                   CG11280
152335_at FBgn0010452        trn        181   6.87E+00   0   Y   N   Y
                   CG9398
151977_at FBgn0034589        TULP       185   6.84E+00   0   Y   N   Y
                   CG4125
143327_at FBgn0003285        rst        187   6.80E+00   0   Y   N   Y
                   CG4531
143483_at FBgn0004569        argos      190   6.77E+00   0   Y   Y   Y
                   CG3780
143850_at FBgn0015818        Spx        193   6.73E+00   0   Y   N   Y
                   CG3036
151989_at FBgn0031645        CG3036     195   6.72E+00   0   Y   N   Y
                   CG6464
143487_at FBgn0004579        salm       197   6.67E+00   0   Y   N   Y
                   CG3385
153902_at FBgn0005636        nvy        198   6.66E+00   0   Y   N   Y
                   CG6995
141333_at FBgn0039229        CG6995     200   6.61E+00   0   Y   N   Y
                   CG7392
154958_at FBgn0044323        Cka        201   6.57E+00   0   Y   N   Y
                   CG10545
154331_at FBgn0001105        Gbeta13F   204   6.52E+00   0   Y   N   Y
                   CG17943
143583_at FBgn0010105        comm       206   6.50E+00   0   Y   N   Y
                   CG3936
143502_at FBgn0004647        N          209   6.46E+00   0   Y   N   Y
          FBgn0004108
151661_s_at        CG9704    Nrt        218   6.35E+00   0   Y   N   Y
                   CG2083
141502_at FBgn0035376        CG2083     219   6.34E+00   0   Y   N   Y
                   CG8597
154925_at FBgn0011640        lark       222   6.30E+00   0   Y   N   Y
                   CG18402
143734_at FBgn0013984        InR        230   6.20E+00   0   Y   N   Y
                   CG12249
142533_at FBgn0021776        mira       238   6.12E+00   0   Y   N   Y
                   CG13789
145963_at FBgn0031922        CG13789    239   6.10E+00   0   Y   N   Y
                   CG31640
145879_at FBgn0051640        CG31640    240   6.10E+00   0   Y   N   Y
                   CG8384
142820_at FBgn0001139        gro        242   6.09E+00   0   Y   N   Y
                   CG7852
147985_at FBgn0035229        CG7852     244   6.05E+00   0   Y   N   Y
                   CG16738
151981_at FBgn0003430        slp1       245   6.05E+00   0   Y   N   Y
                   CG4609
154421_at FBgn0014163        fax        247   6.02E+00   0   Y   N   Y
                   CG8166
142635_at FBgn0034013        unc-5      248   6.01E+00   0   Y   N   Y
                   CG8715
155119_at FBgn0033253        CG8715     252   5.95E+00   0   Y   N   Y
                   CG30040
151236_at FBgn0033681        jeb        255   5.91E+00   0   Y   N   Y
                   CG12306
153742_at FBgn0003124        polo       258   5.87E+00   0   Y   N   Y
                   CG12530
143599_at FBgn0010341        Cdc42      266   5.84E+00   0   Y   N   Y
                   CG2865
153060_at FBgn0023526        EG:25E8.4      268   5.83E+00          0   Y   N   Y
                   CG30122
154274_at FBgn0050122        CG30122        271   5.76E+00          0   Y   N   Y
                   CG1911
154905_at FBgn0039680        CG1911         272   5.75E+00          0   Y   N   Y
                   CG9135
154877_at FBgn0031769        CG9135         273   5.73E+00          0   Y   N   Y
                   CG4548
143015_at FBgn0039338        XNP            278   5.71E+00          0   Y   N   Y
                   CG1311
148163_at FBgn0035523        CG1311         280   5.69E+00          0   Y   N   Y
                   CG9139
141553_at FBgn0035202        CG9139         296   5.56E+00          0   Y   N   Y
                   CG7230
142609_at FBgn0003254        rib            297   5.56E+00          0   Y   N   Y
                   CG14447
144566_at FBgn0040917        CG14447        298   5.53E+00   0.000522   Y   N   Y
                   CG4747
154092_at FBgn0043456        BEST:LD22483   301   5.46E+00   0.000522   Y   N   Y
                   CG9797
142784_at FBgn0037621        CG9797         304   5.42E+00   0.000522   Y   N   Y
                   CG17556
150040_at FBgn0038462        CG17556        307   5.41E+00   0.000522   Y   N   Y
                   CG11312
143675_at FBgn0011674        insc           315   5.35E+00   0.000522   Y   N   Y
                   CG6725
141589_at FBgn0040271        Sulf1          317   5.33E+00   0.000522   Y   N   Y
                   CG31536
149302_at FBgn0051536        CG31536        322   5.28E+00   0.000947   Y   N   Y
                   CG5405
141575_at FBgn0020647        KrT95D         324   5.25E+00   0.000947   Y   N   Y
                   CG7109
154353_at FBgn0004177        mts            327   5.25E+00   0.000947   Y   N   Y
                   CG7752
153860_at FBgn0037066        CG7752         329   5.22E+00   0.000947   Y   N   Y
                   CG2218
142754_at FBgn0039767        CG2218         330   5.22E+00   0.000947   Y   N   Y
                   CG10967
153938_at FBgn0036313        CG10967        333   5.21E+00   0.000947   Y   N   Y
                   CG5069
143752_at FBgn0014143        croc           335   5.21E+00   0.000947   Y   N   Y
          FBgn0027594
151918_s_at        CG2086    drpr           339   5.18E+00   0.000947   Y   N   Y
                   CG1825
153480_at FBgn0010342        Map60          341   5.18E+00   0.000947   Y   N   Y
                   CG7187
153346_at FBgn0038580        CG7187         342   5.17E+00   0.000947   Y   N   Y
                   CG8427
143973_at FBgn0023167        SmD3           345   5.14E+00   0.000947   Y   N   Y
                   CG12269
142866_at FBgn0038665        CG12269        347   5.14E+00   0.000947   Y   N   Y
                   CG3606
142484_at FBgn0011571        caz            348   5.14E+00   0.000947   Y   N   Y
                   CG8651
143384_at FBgn0003862        trx            352   5.11E+00   0.000947   Y   N   Y
                   CG7269
142692_at FBgn0014189        Hel25E         356   5.06E+00    0.00134   Y   N   Y
                   CG9554
152004_at FBgn0000320        eya            357   5.05E+00    0.00134   Y   N   Y
                   CG9191
153851_at FBgn0004378        Klp61F         361   5.04E+00    0.00134   Y   N   Y
          FBgn0003885
141709_i_at        CG2512    alphaTub84D    365   5.02E+00    0.00134   Y   N   Y
                   CG10364
154597_at FBgn0027949        msb1l          367   5.01E+00    0.00134   Y   N   Y
                   CG5408
149123_at FBgn0028978        trbl           369   5.00E+00    0.00134   Y   N   Y
                   CG10522
148666_at FBgn0036295        CG10522        371   4.99E+00    0.00134   Y   N   Y
                   CG8333
143261_at FBgn0002735        HLHmgamma      376   4.96E+00   0.001732   Y   N   Y
                   CG3938
154120_at FBgn0010382        CycE           377   4.95E+00   0.001732   Y   N   Y
                   CG11397
154348_at FBgn0015391        glu            378   4.95E+00   0.001732   Y   N   Y
                   CG17383
154645_at FBgn0039350        CG17383        383   4.92E+00   0.001732   Y   N   Y
          FBgn0034802
142507_s_at        CG3800    CG3800         385   4.90E+00   0.001732   Y   N   Y
                   CG32542
151357_at FBgn0052542        CG32542        386   4.85E+00   0.002089   Y   N   Y
                   CG18740
153570_at FBgn0002783        mor            390   4.81E+00   0.002089   Y   N   Y
                   CG2890
154459_at FBgn0030208        PPP4R2r        393   4.81E+00   0.002089   Y   N   Y
                   CG5235
148844_at FBgn0036565        CG5235         436   4.54E+00   0.004924   Y   N   Y
                   CG3258
143079_at FBgn0000137        ase            462   4.43E+00    0.00608   Y   N   N
                   CG17046
142830_at FBgn0001316        klar           531   4.14E+00   0.010223   Y   N   Y
                   siz
152311_at FBgn0052434        siz            557   4.09E+00   0.010473   Y   Y   N
                   CG9985
141344_at FBgn0016984        sktl           573   4.02E+00   0.011053   Y   N   Y
                   CG30115
152680_at FBgn0050115        CG30115        617   3.90E+00   0.013484   Y   Y   Y
                   CG4707
154509_at FBgn0035036        CG4707         631   3.87E+00   0.015055   Y   N   Y
                   CG3830
143403_at FBgn0003975        vg             653   3.79E+00    0.01753   Y   Y   Y
                   CG5723
143472_at FBgn0004449        Ten-m          772   3.47E+00    0.02653   Y   N   Y
                   CG31369
149500_at FBgn0051369        CG31369       850   3.28E+00    0.035882   Y   N   Y
                   CG1849
151863_at FBgn0003300        run           952   3.07E+00    0.050521   Y   Y   Y
                   CG10388
143400_at FBgn0003944        Ubx          1188   2.66E+00    0.088945   Y   N   N
                   CG6454
154732_at FBgn0039187        CG6454       1564   2.23E+00    0.159758   Y   Y   N
                   CG17278
141578_at FBgn0046763                     6
                             BcDNA:SD04019 333    1.35E-01   0.973396   Y   N   Y
                   CG6570
143576_at FBgn0008651        lbl          7898   -2.64E-01          1   Y   Y   N
                   CG8376
141640_at FBgn0000099        ap          11280   ########           1   Y   Y   N
                   CG5080
154669_at FBgn0031313        CG5080      12658   ########           1   Y   Y   N
                   CG6545
143645_at FBgn0011278        lbe         12929   ########           1   Y   Y   N
                   CG1897
153515_at FBgn0000492        Dr          13657   ########           1   Y   Y   N
                   CG7867
142556_at FBgn0013718        nuf            22   1.29E+01           0   N   Y   Y
                   CG32096
148629_at FBgn0041096        rols          207   6.47E+00           0   N   Y   Y
                   CG8166
151656_at FBgn0034013        unc-5         321   5.29E+00    0.000947   N   N   Y
                   CG31151
142835_at FBgn0051151        CG31151       340   5.18E+00    0.000947   N   N   Y
                   CG1225
151599_at FBgn0035128        RhoGEF3       346   5.14E+00    0.000947   N   N   Y
                   CG31317
149908_at FBgn0020299        stumps        389   4.82E+00    0.002089   N   Y   Y
          FBgn0017581
151687_s_at        CG17342   Lk6           398   4.78E+00    0.002089   N   N   Y
                   CG31794
146489_at FBgn0041789        Pax           413   4.68E+00    0.003597   N   Y   Y
                   CG32542
145335_at FBgn0052542        CG32542       519   4.19E+00    0.009917   N   N   Y
                   CG11100
151758_at FBgn0037207        CG11100       640   3.83E+00    0.016874   N   Y   Y
                   CG30122
147452_at FBgn0050122        CG30122       645   3.81E+00    0.017463   N   N   Y
                   CG7230
151643_at FBgn0003254        rib           756   3.51E+00    0.025794   N   N   Y
                   CG17724
142585_at FBgn0033802        CG17724       767   3.48E+00     0.02653   N   N   Y
          FBgn0003885
141710_r_at        CG2512    alphaTub84D   774   3.46E+00     0.02653   N   N   Y
                   CG33103
141837_at FBgn0003137        Ppn           779   3.46E+00     0.02653   N   N   Y
                   CG5723
149227_at FBgn0004449        Ten-m         827   3.34E+00    0.032447   N   N   Y
          FBgn0001139
142039_s_at        CG8384    gro           863   3.26E+00    0.037101   N   N   Y
                   CG14622
144083_at FBgn0025641        EG:114D9.2    947   3.09E+00     0.04963   N   N   Y
                   CG31043
150173_at FBgn0026239        gukh          957   3.06E+00    0.050521   N   N   Y
                   CG9520
141972_at FBgn0032078        CG9520        980   3.00E+00    0.054932   N   N   Y
                   CG31151
141961_at FBgn0051151        CG31151      1380   2.41E+00    0.127899   N   N   Y
                   CG31640
145877_at FBgn0051640        CG31640      1450   2.34E+00    0.141034   N   N   Y
                   CG30040
147053_at FBgn0033681        jeb          1544   2.25E+00    0.155872   N   N   Y
                   CG7269
141993_at FBgn0014189        Hel25E       1562   2.24E+00    0.158344   N   N   Y
                   CG31640
145878_at FBgn0051640        CG31640      1607   2.18E+00    0.170709   N   N   Y
                   CG31043
150174_at FBgn0026239        gukh         1762   2.04E+00    0.204692   N   N   Y
                   CG32542
145334_at FBgn0052542        CG32542      1791   2.02E+00    0.212172   N   N   Y
                   CG17724
141957_at FBgn0033802        CG17724      2638   1.38E+00    0.438005   N   N   Y
                   lola
151645_at FBgn0005630        lola         3188   1.12E+00    0.543978   N   N   Y
                   CG12249
141945_at FBgn0021776        mira         3644    9.38E-01   0.625778   N   N   Y
                   CG30115
147446_at FBgn0050115        CG30115      3923    8.39E-01   0.668409   N   Y   Y
                   CG10619
141873_at FBgn0003896        tup          4071    7.96E-01   0.684512   N   N   Y
                   CG32096
148628_at FBgn0041096        rols         4554    6.37E-01   0.757203   N   Y   Y
                   CG2086
142159_at FBgn0027594        drpr         4582    6.28E-01    0.76014   N   N   Y
                   CG17046
142044_at FBgn0001316        klar         5440    3.68E-01   0.879963   N   N   Y
                   CG31043
150172_at FBgn0026239        gukh         5883    2.50E-01   0.929498   N   N   Y
                   CG8166
147245_at FBgn0034013        unc-5        6767    2.40E-02          1   N   N   Y
                   CG14447
151386_at FBgn0040917        CG14447      7035   -5.02E-02          1   N   N   Y
                   CG3800
141938_at FBgn0034802        CG3800       7050   -5.38E-02          1   N   N   Y
                   CG31369
151017_at FBgn0051369        CG31369      7585   -1.85E-01          1   N   N   Y
                   CG4548
142108_at FBgn0039338        XNP          8097   -3.17E-01          1   N   N   Y
                   siz
149164_at FBgn0052434        siz          8567   -4.35E-01          1   N   Y   N
                   CG31536
141754_at FBgn0051536        CG31536    9112   -5.82E-01   1   N   N   Y
                   siz
149165_at FBgn0037048        siz        9389   -6.56E-01   1   N   Y   N
                   CG9797
142028_at FBgn0037621        CG9797     9855   -8.07E-01   1   N   N   Y
                   CG32560
145259_at FBgn0052560        CG32560   10021   -8.53E-01   1   N   N   Y
                   CG3800
142508_at FBgn0034802        CG3800    10239   -9.27E-01   1   N   N   Y
                   CG2218
142018_at FBgn0039767        CG2218    10357   -9.71E-01   1   N   N   Y
Expressio Founder
n Pattern Cell
Descriptio expressio
n           n pattern?
            Y
FC, training set
            Y
FC, training set, literature
            Y
FC, training set
all somatic Yfounders, eve-like cells
            Y
FC, training set
            Y
all FCs, v. strong; pan-meso early
            Y
FC, training set
            Y
FC, training set, literature
            Y
FC, training set
            Y
FC, training set
            Y
ectoderm; somatic meso; FC
            Y
FC, training set, literature
            Y
FC, training set, literature
            Y
SM and VM both increase w/Ras; cardiac meso; endo; in eve-like clusters
              of
VM, subsetY somatic founders, increased by Ras
            Y
FC; ecto; CNS
            Y
FC, training set, literature
            Y
FC, hemocytes; one dorsal founder expanded in Ras and Dl
            Y
FC, training set
            Y
FC, training set, literature
            Y
VM, somatic founders, increased by Ras
            Y
FC, training set, literature; ventral midline, stripey ectoderm, eve-like dorsal mesodermal cells; expanded to clusters in Ras*
            Y
ventral midline; FC; ectoderm
            Y
amnioserosa, ventral myoblast founder
            Y
increased by Ras, somatic founders
            Y
Many founders along the D/V axis, CNS
            Y
FC, training set, literature
CNS; largeY   subset of SM in single cells which respond to Ras; FC
            Y
FC subset at st.11; strong increase in Ras from st 11-13
            Y
subset of FCs; pan-meso early
            Y
Ras-reponder in somatic meso; FC (many/all); VM
            Y
FC, literature
            Y
VM, somatic mesoderm, increased by Ras, founder
FC          Y
            Y
all founders (somatic and visceral); VM; increased by Ras
            Y
FC, training set; mesodermal, vaguely him-like; massively activated by Ras*
            Y
FC, training set, literature
            Y
FC; increased by Ras; ant. + post. midgut; ventral + lateral FCs
            Y
FC; early VM (increased in Ras); ventral and lateral founders
            Y
FC, VM, somatic muscle, FC strongly upregulated by Ras
            Y
ventral midline; TPs and trachea later; VM; SM; VM and SM respond to Ras
            Y
FC, training set, literature
several SMY   FCs; eve-like dorsal FC especially responds to Ras
            Y
large # of FCs; ecto; endo
            Y
VM; stage 11 - ventral muscle founders (no lateral or dorsal muscle); stage 13 - CNS, ventral oblique and acute longitudinal mu
            Y
amnioserosa, somatic founders, increased by Ras
             Y
FC, training set, literature
             widely meso; blastoderm meso; VM; in some somatic myoblasts; yolk cells @ blastoderm stage
early st. 10 Y
             SM
strong VM; Y and VM expanded in Ras; FC
             Y
FC, training set, literature
             Y
CNS; VM; TPs and trachea later; subset of SM FCs
             Y
endo; subset of FCs
             Y
FC (many/all); Increased in Ras; cardiac?
             Y
FC, training set, literature
             Y
FC; pan-meso early; ectoderm; somatic meso
many FCs; Y  ecto; endo; CNS
             Y
FC; increased in Ras; pan-meso early and then restricts
FC; CNS Y
             Y
pan-meso at st. 8; endo persists; single SM cells which respond to Ras; FC
             Y
CNS at st. 10-11; st.11 SM FC expression begins
             Y
gonadal meso; ventral FC; Ras responsive
             Y
FC; Ras-responsive; ectoderm and meso expression
             Y
CNS; subset of SM FCs
             Y
FC; VM; CNS; Increased by Ras
FC; CNS Y
             Y
muscle founder, increased by Ras
blastodermY   pair-rule stripes; TPs at st.11; subset of SM FCs
             Y
cardiac prim.; subset of SM FCs (dorsal, no lateral or ventral);
             Y
FC, training set
             Y
CNS; segmental ectodermal stripes; SM FC (Ras responsive)
             Y
muscle founder, increased by Ras
             Y
ventral midline; VM; subset of SM FCs; trachea
             Y
FC, literature
             Y
CNS; salivary gland; pan-meso at st.8-9; SM FCs respond to Ras, best seen in eve-like FC
             Y
ecto stripes at st. 10/11 and CNS at st. 10/11; at least one ventral FC just lateral to CNS that increases in Ras and is a clear ve
             Y
ventral, lateral, somatic founder; VM (bagpipe-like patches); stays on in VM thru pits; CNS
             Y
CNS; salivary gland; single SM cells at st.11-12 in WT, respond to Ras and are maintained in Ras to st.13; FC
             Y
weak SM; increase in Ras; FC
             Y
weak SM; increases in a subset of clusters; FC
CNS; VM; FCs Y
ecto; CNS; Y VM; salivary gland; ventral midline; SM cells respond to Ras, very dynamic pattern
             Y
heart; subset of FCs; ecto; faint ubiquitous expression
             Y
FC; CNS; VM; heart; dorsal and lateral FCs
             Y
CNS; somatic meso; FC
FC           Y
             Y
weak expression in a few SM cells which respond to Ras; FC
              SM
CNS; weakY in single cells which respond to Ras; FC
             ant.
FC (most); Y + post. midgut; ectoderm
CNS; ecto; Y VM; endo; small subset of SM FCs
             FC
CNS; largeY subset; endoderm
             Y
CNS; CM; subset of SM FCs
             Y
ecto stripes at st. 8-11; subset of FCs, mostly ventral
             Y
VM; FC; ecto; CNS
             Y
ecto. stripes; CNS; TPs; CM; SM FCs
FC; ecto Y
             Y
subset of SM FCs
             Y
all/most FCs; ecto.; VM; CM????
             Y
VM; endoderm; FCs
            Y
endo and meso at st. 8; FC subset
            Y
pan-meso at st.8-9; CNS at st. 10-13; weak SM at st. 11, responds to Ras; FC
            Y
CNS; FC subset
CNS; PNS;Y   maybe cardiac prim.; SM cells respond to Ras; FC
            Y
CNS; most/all FCs
CNS; FC Y
            Y
FC, somatic mesoderm, in VF at gastrulation and in stripes excluding NE; TPs at st. 11: pan-meso at st 8,9; FCs increase in Ra
            Y
pan-meso at st. 8-9; SM and VM at st. 11; all/most FCs
VM; FC      Y
            Y
SM cells increase in Ras at st. 11-13; FC; endo; cardiac prim.
            Y
CNS; subsets of SM FCs
            Y
endo at st.10-13; SM FCs
            Y
CNS from st. 10-13; PNS from st. 11-13; single SM cells respond to Ras at st. 11-12; FC
            Y
subset of somatic founders on D/V axis; stage 9 - ectodermal stripes; stage 11-13 - CNS, somatic mesoderm
             of
VM; subsetY SM FCs at st. 11-13
             of
VM, subsetY somatic founders, increased by Ras
            Y
general expression; CNS; FC
CNS; FC Y
            Y
pan-meso at st. 8; weak SM at st. 11 which responds to Ras; FC
            Y
FC; increased in Ras
            Y
VM; CNS; endo; ventral SM FCs and at least one VO muscle
            Y
large # of FCs; endo; VM; amnioserosa
            Y
CNS; FCs all along D/V axis; possible CM cluster???
             SM
CNS; weakY increases w/Ras; FC
            Y
CNS; endo; FCs
            Y
CNS; SM cells respond to Ras, probably in eve cells dorsally
            Y
SM weak but increases w/Ras; FC
            Y
weak SM signal that increases w/Ras; FC
CNS; FC Y
            Y
stage 9 - pan-mesodermal, stage 11 - subset of somatic founders preferentially on V/L axis
            Y
CNS; FCs all along D/V axis; VM; CM
FC          Y
            Y
single SM FCs at st. 11 which respond to Ras
            Y
ventral midline; ecto; subset of SM FCs
CNS; largeY  subset of FCs
            Y
CNS; ventral midline; CM; SM FCs
            Y
pan-meso early; CNS; FC subset; fades in WT SM by st. 13
            Y
CNS; endo; pan-meso at st. 8; single SM FCs at st. 11-12
            Y
single SM FCs at st. 11 which respond to Ras; CNS
            Y
SM expression increases w/Ras; FC
ecto; FC Y
CNS; FC Y
            Y
CNS; VM; single SM FCs at st. 11-12; faint general expression
            Y
pan-meso early; ectoderm; somatic meso; FC
            Y
FC, literature (Artero et al.)
            Y
somatic mesoderm, founders
            Y
FC, training set
CNS; FC Y
            Y
FC, training set
            Y
Many founders along the D/V axis, CNS
            Y
FC, training set
            Y
somatic founders, other expression
            Y
subset of somatic founders (lateral, dorsal, ventral), increased by Ras; starts early stage 11-early 12; ventral midline
            Y
FC, training set
            Y
FC, literature (Artero et al.)
            Y
FC, training set
many FCs; Y  strong increase in Ras
            Y
FC, training set
            Y
FC, training set
            Y
FC, training set
            Y
FC, training set
            Y
FC, training set
            Y
FC, training set
            Y
FC, training set, literature
            Y
ecto. stripes; CNS; TPs; CM; SM FCs
            Y
FC; increased by Ras; ant. + post. midgut; ventral + lateral FCs
            Y
VM, somatic mesoderm, increased by Ras, founder
            Y
FC, training set, literature; ventral midline, stripey ectoderm, eve-like dorsal mesodermal cells; expanded to clusters in Ras*
            Y
large # of FCs; ecto; endo
            Y
FC, training set; mesodermal, vaguely him-like; massively activated by Ras*
ecto; FC Y
            Y
FC, training set
            Y
pan-meso at st.8-9; CNS at st. 10-13; weak SM at st. 11, responds to Ras; FC
            Y
pan-meso at st. 8-9; SM and VM at st. 11; all/most FCs
CNS; largeY  subset of SM in single cells which respond to Ras; FC
FC          Y
            Y
FC, hemocytes; one dorsal founder expanded in Ras and Dl
            Y
somatic founders, other expression
             FC
CNS; largeY subset; endoderm
several SMY  FCs; eve-like dorsal FC especially responds to Ras
            Y
VM, somatic founders, increased by Ras
            Y
amnioserosa, somatic founders, increased by Ras
            Y
FC; increased by Ras; ant. + post. midgut; ventral + lateral FCs
CNS; ecto; Y VM; endo; small subset of SM FCs
            Y
subset of SM FCs
CNS; FC Y
CNS; ecto; Y VM; endo; small subset of SM FCs
            Y
VM, somatic founders, increased by Ras
ecto; FC Y
CNS; largeY  subset of SM in single cells which respond to Ras; FC
            Y
FC; ecto; CNS
             SM
CNS; weakY in single cells which respond to Ras; FC
            Y
FC, training set
            Y
cardiac prim.; subset of SM FCs (dorsal, no lateral or ventral);
            Y
FC, training set, literature
            Y
large # of FCs; endo; VM; amnioserosa
            Y
somatic mesoderm, founders
            Y
VM, somatic founders, increased by Ras
            Y
ecto. stripes; CNS; TPs; CM; SM FCs
VM; FC      Y
            Y
SM expression increases w/Ras; FC
            Y
subset of somatic founders (lateral, dorsal, ventral), increased by Ras; starts early stage 11-early 12; ventral midline
            Y
CNS; most/all FCs
            Y
FC, training set
             of
VM; subsetY SM FCs at st. 11-13
            Y
FC, training set
            Y
CNS; subsets of SM FCs
            Y
endo; subset of FCs
            Y
SM expression increases w/Ras; FC
            Y
pan-meso at st. 8; weak SM at st. 11 which responds to Ras; FC
                                                                              Is highest-
                                                                              ranking     Meta-
                                        Truncated    Truncated   Truncated    probe set analysis     Performe
Affymetrix                              weighting    weighting   weighting    for this    training   d In Situ
ID         FBgn    Symbol    Name       rank         tstat       q-value      gene?       set?       Hyb.?
                   CG2718
141257_at FBgn0001142        Gs1                 1     14.9525            0   Y           Y          Y
                   CG1363
141318_at FBgn0004133        blow                3    14.72006            0   Y           Y          Y
                   CG13503
152980_at FBgn0034695        CG13503             6    14.39452            0   Y           Y          Y
                   CG6494
143186_at FBgn0001168        h                   7    14.21974            0   Y           Y          Y
                   CG14688
149633_at FBgn0037819        CG14688             8    13.89584            0   Y           N          Y
                   CG3850
154772_at FBgn0033782        CG3850             12    12.72051            0   Y           Y          Y
                   CG2679
143537_at FBgn0004919        gol                15    12.66103            0   Y           N          Y
                   CG6050
142510_at FBgn0024556        EfTuM              17    12.54707            0   Y           Y          Y
                   CG13348
154396_at FBgn0020766        Aats-phe           21    11.45388            0   Y           Y          Y
                   CG2708
141789_at FBgn0010812        Tom34              23    11.40115            0   Y           Y          Y
                   CG9674
153030_at FBgn0036663        CG9674             24    11.36281            0   Y           Y          Y
                   CG7458
149217_at FBgn0037144        CG7458             26    11.22187            0   Y           Y          Y
                   CG9663
152940_at FBgn0031516        CG9663             27    11.20731            0   Y           Y          Y
                   CG3303
154879_at FBgn0038381        CG3303             31    11.02601            0   Y           N          Y
                   CG4560
149979_at FBgn0038369        CG4560             32    10.89757            0   Y           Y          Y
                   CG5165
154763_at FBgn0003076        Pgm                34    10.69963            0   Y           N          Y
                   CG10641
141598_at FBgn0032731        CG10641            38    10.34359            0   Y           Y          Y
                   CG7338
154433_at FBgn0037073        CG7338             42    9.952713            0   Y           N          Y
                   CG10286
152411_at FBgn0037439        CG10286            44    9.763521            0   Y           Y          Y
                   CG8443
142634_at FBgn0034087        CG8443             54     9.15143            0   Y           Y          Y
                   CG4677
141284_at FBgn0039039        lmd                59    9.056709            0   Y           Y          Y
                   CG5330
154024_at FBgn0015268        Nap1               63    8.924729            0   Y           N          Y
                   CG12006
141279_at FBgn0035464        CG12006            66    8.835472            0   Y           Y          Y
                   CG18419
153232_at FBgn0032121        CG18419            70    8.592002            0   Y           N          Y
                   CG4033
141487_at FBgn0003278        RpI135             71    8.589815            0   Y           N          Y
                   CG32066
148527_at FBgn0052066        CG32066            72     8.54791            0   Y           N          Y
                   CG7430
141356_at FBgn0036762        CG7430             85    7.990772            0   Y           Y          Y
                   CG8643
141522_at FBgn0033310        rgr                88    7.950455            0   Y           N          Y
                   CG8446
153289_at FBgn0034089        CG8446             91     7.84876            0   Y           N          Y
                   CG14687
149645_at FBgn0037835        CG14687            93    7.782651            0   Y           Y          Y
                   CG1241
153020_at FBgn0035373        CG1241             97    7.719895            0   Y           N          Y
                   CG3572
141802_at FBgn0022960        vimar              98    7.687606            0   Y           N          Y
                   CG10122
153129_at FBgn0019938        RpI1             104     7.568138            0   Y           Y          Y
                   CG1994
144714_at FBgn0030062        CG1994           128     6.898856            0   Y           Y          Y
                   CG8649
153546_at FBgn0024238        Fim              130     6.849484            0   Y           Y          Y
                   CG8759
152402_at FBgn0017565        Nacalpha         154     6.460328            0   Y           Y          Y
                   CG3114
143541_at FBgn0005427        ewg              156     6.429811            0   Y           Y          Y
                   CG7449
147231_at FBgn0029082        hbs              157     6.397103            0   Y           N          N
                   CG8556
153313_at FBgn0014011        Rac2             161     6.324505            0   Y           N          Y
                   CG3811
142176_at FBgn0032123        CG3811           169     6.210075            0   Y           N          Y
                   CG5441
152889_at FBgn0008649        dei              170      6.19324            0   Y           N          N
                   CG6586
153676_at FBgn0028980        tan              188     5.979145    0.000631    Y           N          Y
                   CG4591
153111_at FBgn0037848        Tsp86D           242     5.362734    0.000631    Y           Y          Y
                   CG5258
142579_at FBgn0029148        NHP2             449      4.11559    0.014105    Y           Y          Y
                   CG4426
141517_at FBgn0015905        ast              477      4.00842    0.016218    Y           N          Y
                   CG10742
144411_at FBgn0040334        Tsp3A            931     2.863216    0.096491    Y           Y          N
                   CG12690
144337_at FBgn0029504        CHES-1-like    2210   1.604821   0.393303   Y   Y   Y
                   CG33141
146839_at FBgn0024189        sns            2570   1.392428   0.471412   Y   Y   N
                   CG18464
151249_at FBgn0040776        CG18464        6646    0.05184          1   Y   Y   N
                   CG9553
153858_at FBgn0000308        chic           9611   -0.73811          1   Y   Y   Y
                   CG30350
152710_at FBgn0050350        CG30350        9814   -0.79351          1   Y   Y   N
                   CG32066
148530_at FBgn0052066        CG32066          83   8.024417          0   N   N   Y
                   CG8443
151655_at FBgn0034087        CG8443          134   6.776382          0   N   Y   Y
                   CG3811
151487_at FBgn0032123        CG3811          573   3.657161   0.030488   N   N   Y
                   CG8643
146821_at FBgn0033310        rgr             717   3.268965   0.060166   N   N   Y
                   CG33141
146836_at FBgn0024189        sns            2621   1.371821   0.477086   N   Y   N
                   CG33141
146835_at FBgn0024189        sns            3169   1.128174    0.56816   N   Y   N
                   CG33141
146838_at FBgn0024189        sns            4142   0.750853   0.740303   N   Y   N
                   CG33141
146837_at FBgn0024189        sns            4168   0.741058   0.744482   N   Y   N
                   CG6050
141939_at FBgn0024556        EfTuM         10288   -0.94371          1   N   Y   Y
Expressio
n Pattern FCM
Descriptio expressio
n          n pattern?
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, literature and training set
FCM        Y
           Y
FCM, training set
           Y
FCM, literature
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, ectoderm, trachea
           Y
FCM, training set
           Y
SM, endoderm
           Y
FCM, training set
endoderm, Y SM
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, literature and training set
           Y
FCM, VM, endoderm, hemocytes primordia
           Y
FCM, training set
           Y
st.11 mesoderm specific (visceral then somatic); severely reduced in Ras*
FCM        Y
           Y
FCM, VM, ectoderm
           Y
FCM, training set
FCM        Y
           Y
mesoderm-specific (visceral then somatic); gone in Ras* except maybe endoderm (maybe yolk)
           Y
FCM, training set
FCM, VM Y
FCM, VM Y
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, training set
           Y
FCM, literature
FCM, VM Y
           Y
FCM, VM, amnioserosa, hindgut, ventral ectoderm at st 9
           Y
FCM, literature (Artero et al).
FCM; st.11Y mesoderm-specific; gone in Ras*
           Y
FCM, training set
FCM        Y
FCM        Y
           Y
FCM, training set
FCM        Y
           Y
FCM, literature
           Y
FCM, training set
FCM        Y
           Y
FCM, training set
           Y
FCM, VM, ectoderm
           Y
FCM, training set
           Y
FCM, VM, amnioserosa, hindgut, ventral ectoderm at st 9
FCM        Y
           Y
FCM, literature
           Y
FCM, literature
           Y
FCM, literature
           Y
FCM, literature
           Y
FCM, training set
                                                                              Is highest-
                                                                              ranking     Meta-
                                        Truncated    Truncated   Truncated    probe set analysis     Performe
Affymetrix                              weighting    weighting   weighting    for this    training   d In Situ
ID         FBgn     Symbol    Name      rank         tstat       q-value      gene?       set?       Hyb.?
                    CG32031
152383_at FBgn0000116         Argk               4    14.71482            0   Y           N          Y
                    CG7989
153875_at FBgn0034119         CG7989            37    10.40884            0   Y           N          Y
                    CG1411
153396_at FBgn0023023         CRMP              49    9.411649            0   Y           N          Y
                    CG8503
152363_at FBgn0033917         CG8503            56    9.112647            0   Y           N          Y
                    CG10622
142911_at FBgn0029118         Sucb              69    8.659875            0   Y           N          Y
                    CG2206
154242_at FBgn0029984         CG2206            76    8.368519            0   Y           N          Y
                    CG10341
152902_at FBgn0032701         CG10341           77    8.315772            0   Y           N          Y
151685_r_at         CG32813
           FBgn0052813        CG32813           81    8.141698            0   Y           N          Y
                    CG10578
143835_at FBgn0015657         DnaJ-1            86    7.983059            0   Y           N          Y
                    CG10576
154529_at FBgn0035630         CG10576           95    7.724398            0   Y           N          Y
                    CG12396
146333_at FBgn0022069         Nnp-1           101     7.671783            0   Y           N          Y
                    CG5033
154156_at FBgn0028744         EG:52C10.1      107     7.487249            0   Y           N          Y
                    CG14066
153228_at FBgn0040108         larp            118     7.203839            0   Y           N          Y
                    CG4760
143637_at FBgn0011206         bol             124     7.002445            0   Y           N          Y
                    CG3071
155028_at FBgn0023527         EG:25E8.3       125     6.987897            0   Y           N          Y
                    CG9888
153601_at FBgn0003062         Fib             129     6.867542            0   Y           N          Y
                    CG4364
154393_at FBgn0032138         CG4364          133     6.803469            0   Y           N          Y
                    CG8939
154194_at FBgn0030720         CG8939          136     6.761001            0   Y           N          Y
                    CG7033
142977_at FBgn0030086         CG7033          141     6.658884            0   Y           N          Y
                    CG3705
154184_at FBgn0023129         aay             145     6.633411            0   Y           N          Y
                    CG10805
141566_at FBgn0031864         CG10805         150     6.529176            0   Y           N          Y
                    CG30118
147439_at FBgn0050118         CG30118         155     6.447649            0   Y           N          Y
                    CG10798
143126_at FBgn0000472         dm              163     6.294262            0   Y           N          Y
                    CG12050
154526_at FBgn0032915         CG12050         166     6.246981            0   Y           N          Y
                    CG3981
142554_at FBgn0040395         Unc-76          167     6.233984            0   Y           N          Y
                    CG8545
153160_at FBgn0033741         CG8545          176     6.086763    0.000631    Y           N          Y
                    CG10565
154210_at FBgn0037051         CG10565         181     6.050002    0.000631    Y           N          Y
                    CG11130
141535_at FBgn0020909         Rtc1            185     6.032718    0.000631    Y           N          Y
                    CG5374
143374_at FBgn0003676         T-cp1           197     5.890227    0.000631    Y           N          Y
                    CG4038
143696_at FBgn0011824         CG4038          200     5.865658    0.000631    Y           N          Y
                    CG9300
154068_at FBgn0036886         CG9300          212     5.678434    0.000631    Y           N          Y
                    CG1785
152691_at FBgn0030061         CG1785          215     5.632239    0.000631    Y           N          Y
                    CG12301
154570_at FBgn0036514         CG12301         224     5.585252    0.000631    Y           N          Y
                    CG1429
153628_at FBgn0011656         Mef2            232     5.412208    0.000631    Y           N          Y
                    CG4012
154234_at FBgn0023081         gek             238     5.387495    0.000631    Y           N          Y
                    CG6972
150394_at FBgn0039008         CG6972          243     5.344265    0.000631    Y           N          Y
                    CG14938
143920_at FBgn0020309         crol            246     5.288332    0.000631    Y           N          Y
                    CG9403
154774_at FBgn0041145         jing            250     5.227447    0.000631    Y           N          Y
                    CG6226
154545_at FBgn0013269         FK506-bp1       267     5.090602    0.001225    Y           N          Y
                    CG13849
153330_at FBgn0038964         Nop56           283     5.007117    0.001678    Y           N          Y
                    CG4511
153166_at FBgn0037843         CG4511          303     4.856747    0.002151    Y           N          N
                    CG6751
154076_at FBgn0033562         CG6751          333     4.683183    0.004464    Y           N          N
                    CG10379
143808_at FBgn0015513         mbc             360     4.548166    0.008513    Y           N          N
                    CG5654
154807_at FBgn0022959         yps             413     4.262242    0.011299    Y           N          N
                    CG1915
143611_at FBgn0003432         sls             451     4.109869    0.014412    Y           Y          N
                    CG8531
154397_at FBgn0033918         CG8531          551     3.747769    0.026316    Y           N          N
                   CG6937
150379_at FBgn0038989        CG6937            944   2.849736   0.097105   Y   N   N
                   CG8977
153982_at FBgn0015019        Cctgamma         1078   2.620347   0.134045   Y   N   N
                   CG8231
152518_at FBgn0030681        CG8231           1509   2.121168   0.245033   Y   N   N
                   CG17870
153924_at FBgn0004907        14-3-3zeta       4913   0.521482   0.825532   Y   N   N
                   CG14548
151820_at FBgn0002733        HLHmbeta         6451   0.104279   0.986798   Y   N   Y
                   CG13011
145201_at FBgn0030771        CG13011         12209   -1.81543          1   Y   N   N
                   CG4125
143327_at FBgn0003285        rst             13070   -2.58555          1   Y   N   N
                   CG9610
143308_at FBgn0003129        Poxm            13335   -2.99425          1   Y   N   N
                   CG11059
153739_at FBgn0039928        calsyntenin-1   13821   -5.35333          1   Y   N   Y
                   CG32813
142790_at FBgn0052813        CG32813           114   7.307881          0   N   N   Y
                   CG7033
151740_at FBgn0030086        CG7033            352   4.595259   0.006629   N   N   Y
                   CG30118
152372_at FBgn0050118        CG30118           486   3.976957   0.017687   N   N   Y
                   CG4760
151300_at FBgn0011206        bol               893   2.925805   0.089959   N   N   Y
                   CG3981
151618_at FBgn0040395        Unc-76           1092   2.603353   0.135684   N   N   Y
                   CG8231
145148_at FBgn0030681        CG8231           4300   0.696754   0.763441   N   N   N
          FBgn0003432
151579_s_at        CG1915    sls              7010   -0.03687          1   N   Y   N
                   CG10622
142078_at FBgn0029118        Sucb             7782   -0.23743          1   N   N   Y
                   CG32031
148443_at FBgn0000116        Argk             8002   -0.29681          1   N   N   Y
                   CG1915
142465_at FBgn0003432        sls              8081   -0.31952          1   N   Y   N
                   CG2206
144667_at FBgn0029984        CG2206           8432   -0.40873          1   N   N   Y
                   CG1915
148020_at FBgn0003432        sls              9594   -0.73156          1   N   Y   N
                   CG32813
151367_at FBgn0052813        CG32813         10279   -0.94248          1   N   N   Y
Expression FCM
Pattern      expressio
Description n pattern?
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, endoderm
FC+FCM       FC+FCM
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, endoderm
             FC+FCM
FC+FCM, endoderm
             FC+FCM
FC+FCM, endoderm
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, endoderm, CNS
             FC+FCM
FC+FCM, endoderm, salivary glands
             FC+FCM
FC+FCM, endoderm, salivary glands
              endoderm,
FC+FCM, VM,FC+FCM salivary glands
             FC+FCM
FC+FCM, endoderm
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, endoderm
             FC+FCM
FC+FCM, endoderm
              endoderm
FC+FCM, VM,FC+FCM
             FC+FCM
FC+FCM, endoderm, salivary glands
              endoderm
FC+FCM, VM,FC+FCM
              endoderm
FC+FCM, VM,FC+FCM
             FC+FCM
FC+FCM, endoderm, salivary glands
             FC+FCM
FC+FCM, endoderm, salivary glands, amnioserosa
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, endoderm, salivary glands
              CNS
FC+FCM, VM,FC+FCM
             FC+FCM
FC+FCM, endoderm
             FC+FCM
FC+FCM, endoderm
             FC+FCM
FC+FCM, endoderm, salivary glands
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, endoderm
             FC+FCM
FC+FCM, endoderm
             FC+FCM
FC+FCM, endoderm
             FC+FCM
FC+FCM, endoderm
             FC+FCM
FC+FCM, literature
FC+FCM, VM FC+FCM
FC+FCM       FC+FCM
FC+FCM, VM FC+FCM
              endoderm
FC+FCM, VM,FC+FCM
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, endoderm, salivary glands
FC+FCM       FC+FCM
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, literature
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, but mistakenly included in training set
FC+FCM       FC+FCM
FC+FCM       FC+FCM
FC+FCM       FC+FCM
FC+FCM       FC+FCM
FC+FCM       FC+FCM
FC+FCM       FC+FCM
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, literature
FC+FCM       FC+FCM
FC+FCM       FC+FCM
FC+FCM       FC+FCM
              endoderm
FC+FCM, VM,FC+FCM
             FC+FCM
FC+FCM, endoderm, salivary glands, amnioserosa
FC+FCM       FC+FCM
              CNS
FC+FCM, VM,FC+FCM
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, but mistakenly included in training set
             FC+FCM
FC+FCM, endoderm
FC+FCM       FC+FCM
             FC+FCM
FC+FCM, but mistakenly included in training set
             FC+FCM
FC+FCM, endoderm
             FC+FCM
FC+FCM, but mistakenly included in training set
FC+FCM       FC+FCM
                                                                                In
                                        Average                                situ
                                          Fold         Gene          Gene     done                     In situ in
Affymetrix                      Gene    Change      Ontology Ontology in this                         activated
Probe Set     Gene Gene CG     Flybase   (GFP+      Biological Molecular study Expression                 Ras
    ID       Symbol    ID         ID   vs. GFP-)     Process Function           ?       Pattern        embryos
153628_at Mef2      CG1429    FBgn0011656 11.90                  3700 of transcription, DNA-dependent // non-traceable auth
                                                                                N ---               ---
                                                   6355 // regulation// transcription factor activity // non-traceable author st
143760_at Cng       CG7779    FBgn0014462 10.06                  5221 // intracellular cyclic author statement cation channe
                                                                                 non-traceable ---
                                                   6812 // cation transport //Y Failed nucleotide activated /// 7608 // per
141284_at lmd       CG4677    FBgn0039039 10.03                  3700 of transcription from Pol--- promoter // inferred from e
                                                                                N ---                 II
                                                   6357 // regulation// transcription factor activity // inferred from sequence
           b        C
143391_i_at etaTub60D G3401   FBgn00038889.32                    5200 // protein transport // inferred from electronic annotatio
                                                                                N ---               ---
                                                   6886 // intracellular structural constituent of cytoskeleton // inferred from
142182_s_atPpn      CG33103   FBgn00031378.46                    4867 // serine-type endopeptidase inhibitor activity // inferred
                                                                                Y hemocytes ---
                                                   6508 // proteolysis and peptidolysis // inferred from electronic annotation
141687_at srp       CG3992    FBgn00035077.36                    3677 DNA binding
                                                                                N     traceable author statement /// 1709 // cell
                                                   1706 // endoderm//formation //--- // inferred---   from direct assay /// 3677 // D
141712_at CG1471 CG1471       FBgn00397746.06                     metabolism // activity from electronic annotation
                                                                                N ---               ---
                                                   6629 // lipid 16298 // lipaseinferred // inferred from electronic annotation
143611_at sls       CG1915    FBgn00034326.02      ---           ---            Y ---               ---
142220_at CG8193 CG8193       FBgn00333675.34                    4503 // monophenol monooxygenase activity // inferred from
                                                                                N procrystal cell
                                                   6952 // defense response // non-traceable---       author statement
141598_at CG10641 CG10641     FBgn00327315.28                    5509 // calcium ion binding // inferred from sequence similar
                                                                                Y st // inferredventral head mesoderm, st 10
                                                                                                      from expression pattern
                                                   7498 // mesoderm development9 VM and Ras there's no expression left
154571_at CG10275 CG10275     FBgn00326835.07                    ---            Y st 10 gonadal meso, st annotation meso.
                                                                                                    SG24UASRas two groups of
                                                   7154 // cell communication // inferred from electronic 11 gonadal /// 7165
145827_at CG31915 CG31915     FBgn00519154.90                    8475 // procollagen-lysine 5-dioxygenase activity // inferred
                                                                                Y Failed            ---
                                                   5975 // carbohydrate metabolism // inferred from electronic annotation f
153070_at Tequila   CG4821    FBgn00234794.86                    4252 // serine-type endopeptidase activity // inferred from se
                                                                                Y st 9-10 non-traceable author statement
                                                                                                    early st 11 the ventral betwee
                                                   6508 // proteolysis and peptidolysis //ventral mesodermal bands bands d
148493_at CG6736 CG6736       FBgn00360484.70      ---           ---                                ---
                                                                                Y early panmesodermal, VM and ventral my
152483_at CG6372 CG6372       FBgn00359154.69                    4178 // leucylY st 10 // inferred 11 // inferred from seque
                                                                                 aminopeptidase ---  activity panmesodermal, no o
                                                   6508 // proteolysis and peptidolysisclusters, stfrom electronic annotation
                    CG16876
144283_at BG:DS05899.3        FBgn00288764.48      ---           ---            N ---               ---
141793_at NtR       CG6698    FBgn00291474.43      ---                          N extracellular---
                                                                 5231 // excitatory ---              ligand-gated ion channel acti
145327_s_atCG6900 CG6900      FBgn00309584.25      ---           ---            Y st 9-10 head---     meso, st 11 mesoderm but fa
152336_at DNaseII CG7780      FBgn00004774.17                    3676 // nucleic acid binding electronic annotation /// 8632 //
                                                                                Y endoderm and fat body
                                                                                                    ---
                                                   6308 // DNA catabolism // inferred from // inferred from electronic annota
143650_at Rya-r44F CG10844    FBgn00112864.12                    4872 // transport // traceable --- from electronic 6936 // mu
                                                                                Y st 11 // inferred st 12 VM very annotation
                                                                                                    VM,
                                                   6816 // calcium ion receptor activitystrongauthor statement /// faint SM to
144088_at scf       CG9148    FBgn00256824.05                    5509 // calcium ion binding and some from electronic annota
                                                                                Y st 11 VM // inferred ventral SM, annotatio
                                                                                                    ---
                                                   19722 // calcium-mediated signaling // inferred from electronichemocyte
141412_at CG6891 CG6891       FBgn00309553.89      ---           ---            N ---               ---
154791_at CG14207 CG14207     FBgn00310373.83      ---           ---                                lateral and clear clusters in S
                                                                                Y st 11 dorsal Ras and Dl ventral somatic, al
154737_at CG12908 CG12908     FBgn00335093.81      ---                          Y st 9 very activity clusters with more cells
                                                                                                      bands ventrally segmentally
                                                                 5198 // structural molecule thin Ras// inferred from electronic
152747_at Pxn       CG12002   FBgn00118283.64                    4601 // reactive oxygen species metabolism // inferred from
                                                                                N ---               ---
                                                   6800 // oxygen andperoxidase activity // inferred from sequence similari
152208_at Fkbp13 CG9847       FBgn00104703.64                    3755 // peptidyl-prolyl cis-trans isomerase activity
                                                                                N ---               ---
                                                   6457 // protein folding // inferred from electronic annotation // inferred
148469_at CG3424 CG3424       FBgn00360073.60      ---           ---                                UASRas. increased midline e
                                                                                Y pair rule expression, complementary to ftz
152363_at CG8503 CG8503       FBgn00339173.37      ---           ---                                Ras st 11dorsal (cardiac prim
                                                                                Y st 10 mesoderm reduced expression but w
142413_at CG11314 CG11314     FBgn00398003.34                    ---            Y Failed            ---
                                                   7498 // mesoderm development // inferred from expression pattern
143637_at bol       CG4760    FBgn00112063.29                    3723 of translation 11-14 VM,Ras geneticventral SM, ////// 3
                                                                                Y st inferred from sequence similarity 15
                                                                                                      lateral and interaction st 71
                                                   6445 // regulation// RNA binding////inferred from lateral and ventral cluste
154669_at CG5080 CG5080       FBgn00313133.18      ---           ---                                Ras not of clusters although
                                                                                Y st11 complex patternbig single or,small gro
151870_at p130CAS CG1212      FBgn00351013.16                    5200 cell cycle // blastoderm several stripes, ventral bands
                                                                                Y inferred from electronic annotation /// 701
                                                                                                    UASRas, st 10 st 9 panmesod
                                                   74 // regulation of// structural constituent of cytoskeleton // inferred from
154821_at CG8147 CG8147       FBgn00376993.16      ---           ---                                ---
                                                                                Y st 8 endoderm st 10 amnioserosa, late st
149633_at CG14688 CG14688     FBgn00378193.15      ---           ---                                Ras mostly gone, panmesode
                                                                                Y blastoderm ventral stripe, st 8 there are so
145201_at CG13011 CG13011     FBgn00307713.13      ---           ---                                SG24UASRas st 10 mesod b
                                                                                Y wt st 9-10 cardiac prim? VM, at 10-11 VM
145282_at CG15064 CG15064     FBgn00309003.03      ---           ---            N ---               ---
149645_at CG14687 CG14687     FBgn00378352.99      ---           ---                                 caudal meso st 10 gone, som
                                                                                Y st 9 VM and UASRas lateral SMVM and so
141318_at blow      CG1363    FBgn00041332.96                    ---            Y st // VM, caudal expression pattern ///
                                                                                                    UASRas lateral SM gone, ven
                                                   7498 // mesoderm development10 inferred from mesoderm and ventral7S
149433_at CG14608 CG14608     FBgn00374872.95      ---           ---            Y ---               ---
152980_at CG13503 CG13503     FBgn00346952.86      ---           ---                                st 10 starts in VM and ventral
                                                                                Y blastoderm, Ras mostly gone except for so
151287_at CG11051 CG11051     FBgn00408132.81                    5184 // neuropeptide hormonenon-traceable it remains autho
                                                                                Y amnioserosa activity // non-traceable insid
                                                   7218 // neuropeptide signaling pathway // ---       later at st 16 author stateme
153381_at CG5973 CG5973       FBgn00319142.79                    5386 // carrier activity // inferred from electronic annotation /
                                                                                N ---               ---
                                                   6731 // coenzyme and prosthetic group metabolism // inferred from elec
148973_at Adgf-A      CG5992 FBgn00367522.74       ---                         Y      deaminase --- activity st 11 starts VM, st12
                                                                 4000 // adenosineblastoderm in head, // inferred from direct
152637_at rols        CG32096 FBgn00410962.67                    5057 // receptor --- from mutant phenotype /// 7520 // ele
                                                                                 inferred           ---
                                                   7520 // myoblast fusion //N signaling protein activity // inferred from my
144998_at CG15745 CG15745 FBgn00304692.65          ---           ---                                ---
                                                                               Y st 11 head meso and st 15 gut
143858_at crq         CG4280 FBgn00159242.62       ---           ---           N ---                ---
145390_at meso18E CG14233 FBgn00400892.60                        ---           N ---                ---
                                                   7498 // mesoderm development // inferred from expression pattern
152439_at CG4829 CG4829 FBgn00307962.59            ---           ---           Y                    ---
                                                                                      hemocytes and VM.
146908_at CG18446 CG18446 FBgn00334582.58          ---           ---           N ---                ---
151301_at CG13315 CG13315 FBgn00408272.57          ---           ---                                ---
                                                                               Y st 11 head meso, some cells of amnios., s
          Prx2540-2 CG11765 FBgn00335182.55
146946_s_at                                                      4601 // reactive oxygen species metabolismit remains insid
                                                                               Y amnioserosa later at st 16 // inferred from
                                                                                                    ---
                                                   6800 // oxygen andperoxidase activity // non-traceable author statemen
143747_at Sr-CI       CG4099 FBgn00140332.55                     5044 // scavenger---
                                                                               N      receptor statement /// 6952 // defense s
                                                                                                    ---
                                                   6909 // phagocytosis // traceable authoractivity // non-traceable author re
154810_at CG6199 CG6199 FBgn00361472.53            ---                         Y st 11 hemocytes like, also VM, // inferred f
                                                                                                    ---
                                                                 8475 // procollagen-lysine 5-dioxygenase activity heart precu
152020_at CG31150 CG31150 FBgn00511502.51          ---           ---           N ---                ---
153396_at CRMP        CG1411 FBgn00230232.49                     4157 // dihydropyrimidinase activityand Dl there'smetabolism
                                                                               Y early st 11 caudal meso, VM, late 11-12 V
                                                                                                    Ras nucleic acid still expres
                                                   6139 // nucleobase, nucleoside, nucleotide and // inferred from sequenc
          CG32813 CG32813 FBgn00528132.48
151685_r_at                                        ---           ---                                Ras st 11- 12 some lateral SM
                                                                               Y st 11 VM, ventral SM and SM gone (there
154590_at bru-3       CG12478 FBgn00363792.48                    3723 // RNA binding // inferred late stsequence similarity sy
                                                                               Y       inferred from  from 13 VM and nervous
                                                   19538 // protein metabolism //st 11-12 VM--- electronic annotation
143537_at gol         CG2679 FBgn00049192.45                     30528 // transcription, DNA-dependent // non-traceable auth
                                                                               Y ---                ---
                                                   6355 // regulation of transcription regulator activity // inferred from electr
142634_at CG8443 CG8443 FBgn00340872.42                          3743 // translationstinferred from activitylateral SM gone,seq
                                                                               Y         7 posterior endoderm// inferred from en
                                                                                                    UAS RAS         similarity /// 6445
                                                   6413 // translational initiation //initiation factorsequencest 8 anterior and
151655_at CG8443 CG8443 FBgn00340872.36                          3743 // translation---
                                                                               Y        inferred from activity // similarity /// 6445
                                                                                                    ---
                                                   6413 // translational initiation //initiation factorsequence inferred from seq
141789_at Tom34       CG2708 FBgn00108122.35       ---                         Y wt st inferred VM, electronic VM lateral a
                                                                                                    SG24UASRas st annotation
                                                                 5386 // carrier activity //11 starts from later st 11 11 SM is m
153744_at CG9650 CG9650 FBgn00299392.32            ---           ---           N ---                ---
143186_at h           CG6494 FBgn00011682.31                     3704 // specific transcription from transcription factor activi
                                                                                  of Failed         ---
                                                   122 // negative regulationY RNA polymerase II Pol II promoter // non-tra
143410_at w           CG2759 FBgn00039962.29                     pigment biosynthesis // non-traceable author statement /// 6
                                                                               N ---                ---
                                                   6726 // eye 4009 // ATP-binding cassette (ABC) transporter activity // inf
154602_at htl         CG7223 FBgn00103892.29                     4713 // protein-tyrosine kinase inferred// inferred from seque
                                                                               N ---
                                                   1710 // mesoderm cell fate commitment //---       activity from genetic interact
143794_at Ssb-c31a CG8396 FBgn00152992.28                        3697 of transcription from Pol--- promoter // inferred sequen
                                                                               Y st 11- 13 epidermis, inferred from nervou
                                                                                                     II
                                                   6357 // regulation// single-stranded DNA binding // endoderm andfrom se
141633_at CG13384 CG13384 FBgn00320362.28          ---           ---                                ---
                                                                               Y head meso and amnioserosa
143355_at sn          CG32858 FBgn00034472.26                    3779 // actin binding // inferred---
                                                                               N ---                  from sequence similarity /// 3
                                                   7010 // cytoskeleton organization and biogenesis // inferred from electro
141676_at zfh1        CG1322 FBgn00046062.22                     3677 of transcription traceable promoter // inferred from //
                                                                               N ---                 II
                                                   6357 // regulation// DNA binding //from Pol--- author statement /// 3702 e
141760_at nAcRbeta-21CCG11822 FBgn00312612.22      ---                         N ---                ---
                                                                 4889 // nicotinic acetylcholine-activated cation-selective cha
144712_at Hexo2       CG1787 FBgn00416292.22                     4563 // beta-N-acetylhexosaminidase activity // inferred from
                                                                               N ---                ---
                                                   5976 // polysaccharide metabolism // inferred from electronic annotation
151760_at CG8468 CG8468 FBgn00339132.21                          15355 // monocarboxylate electronic annotation
                                                                                 inferred           ---
                                                   6812 // cation transport //N --- fromporter activity // non-traceable au
154396_at Aats-phe CG13348 FBgn00207662.18                       4826 // phenylalanine-tRNA ligase activity inferred fromsim
                                                                               Y early st 11 ventral SM, VM, SM gone late
                                                                                                     // inferred from sequence se
                                                   6432 // phenylalanyl-tRNA aminoacylationRas gone Dl//all late 11-14 VM
151503_at NetB        CG10521 FBgn00157742.18      ---           ---                                Ras no effect on the ventral c
                                                                               Y in blastoderm and gastrulation ventral cell
152411_at CG10286 CG10286 FBgn00374392.16          ---           ---                                 Ras fuzzy expression remain
                                                                               Y st8 panmesodermal, st11-14 ventral dorso
153311_at Hsc70-5 CG8542 FBgn00012202.16                         3754 // chaperone activity // inferred from sequence similarit
                                                                               Y Failed             ---
                                                   6457 // protein folding // inferred from electronic annotation /// 6626 // pr
141814_at CG8372 CG8372 FBgn00320002.16            ---           ---           N ---                ---
153728_at Ance        CG8827 FBgn00120372.15                     4246 // peptidyl-dipeptidase A --- Malpigian tubules direct
                                                                               Y endoderm and       activity // inferred from
                                                   6508 // proteolysis and peptidolysis // inferred from electronic annotation
146190_at CG17124 CG17124 FBgn00322972.14          ---                         Y st 11 nothing st 13-15 some cells in poste
                                                                                                    ---
                                                                 4864 // protein phosphatase inhibitor activity // non-traceable
          betaTub60D G3401 FBgn00038882.13
143392_r_at           C                                          5200 // protein transport // inferred from electronic annotatio
                                                                               N ---                ---
                                                   6886 // intracellular structural constituent of cytoskeleton // inferred from
153863_at CG32062 CG32062 FBgn00520622.11          ---                         Y wt // inferredSG24UASRas; similarity
                                                                                                      from 13 SM and VM, nervou
                                                                 3723 // RNA binding st11-12 SM, st sequencegeneral expre
152940_at CG9663 CG9663 FBgn00315162.10                           metabolism // inferred from electronic annotationboth ftz inf
                                                                               Y st cassette (ABC) transporter activity // an
                                                                                                     expression gone /// 6869 //
                                                   6629 // lipid 4009 // ATP-binding 8 pair rule RAS clearlyadjacent to SM st
152383_at Argk        CG32031 FBgn00001162.10                    4054 // arginine kinase activity lateral cells per, sequence(som
                                                                                // early from sequence gone segment sim
                                                                                                     // inferred from CNS persists
                                                   16310 // phosphorylation Y inferredst 11 3 Ras VM similarity
142672_at CG10157 CG10157 FBgn00390992.10          ---           ---           N Failed             ---
          u
151684_i_at nspecifiedunspecifiedFBgn00295762.10   ---           ---           N ---                ---
153378_at Cg25C       CG4145 FBgn00002992.10                     5198 // structural molecule activity // inferred from electronic
                                                                               N ---                ---
                                                   7010 // cytoskeleton organization and biogenesis // inferred from electro
148116_at CG14973 CG14973 FBgn00354512.08          ---           ---                                ---
                                                                               Y st 11 nothing except a few internal cells in
153144_at Ahcy13      CG11654 FBgn00144552.08                    4013 // metabolism // inferred---
                                                                               N ---                 from electronic annotation
                                                   6144 // purine baseadenosylhomocysteinase activity // inferred from seq
146098_at hoip        CG3949 FBgn00153932.07                     3723 // RNA binding inferred---
                                                                               N       via            from sequence similarity /// 3
                                                   398 // nuclear mRNA splicing,--- // spliceosome // inferred from sequenc
152715_at CG1600 CG1600 FBgn00331882.07            ---           ---           Y amnioserosa        ---
154252_at LanA        CG10236 FBgn00025262.05                    5198 // structural hemocytes --- // inferred from electronic
                                                                               Y      inferred activity
                                                   7160 // cell-matrix adhesion //molecule from electronic annotation /// 716
154884_at CG8602 CG8602 FBgn00357632.05                          5215 transporter activity // inferred from /// 6811 // ion tran
                                                                               N ---                ---
                                                   6810 // transport // inferred from electronic annotation electronic annotat
144829_at CG15209 CG15209 FBgn00302372.04          ---           ---           N ---                ---
143396_at twi         CG2956 FBgn00039002.04                     3677 // DNA binding // non-traceable author statement /// 37
                                                                               N ---
                                                   1710 // mesoderm cell fate commitment //---       traceable author statement //
142876_at Trl       CG9343    FBgn00132632.00                 3677 // DNA binding // non-traceable author architecture 37
                                                                             N ---               ---
                                                6325 // establishment and/or maintenance of chromatin statement ///// n
142510_at EfTuM     CG6050    FBgn00245562.00                 3746 // translationst 11-14 lateral and ventral inferred from s
                                                                             Y     elongation from gone from the endoderm
                                                                                                 Ras activity // similarity /// 64
                                                6414 // translational elongation // inferred factorsequence SM, lateral SM
153593_at vig       CG4170    FBgn00241831.98                 3723 // RNA binding // inferred physical interaction
                                                                             N ---
                                                16246 // RNA interference // inferred from ---     from sequence similarity
141762_at Cp1       CG6692    FBgn00137701.98                 4217 // cathepsin ---activity // inferred from sequence similar
                                                                             N L                 ---
                                                6508 // proteolysis and peptidolysis // inferred from electronic annotation
145228_at CG8936 CG8936       FBgn00308181.96   ---           ---            N ---               ---
152342_at CG31038 CG31038     FBgn00510381.95   ---           ---                                RAS late st 11 VM gone, vent
                                                                             Y early st 11 only VM, then ventral SM come
153856_at LanB2     CG3322    FBgn00025281.92                 5198 // structural ---
                                                                             N     inferred activity // inferred from electronic
                                                                                                 ---
                                                7160 // cell-matrix adhesion //molecule from electronic annotation /// 716
142210_at HLH54F CG5005       FBgn00227401.92   ---                          N ---               ---
                                                              3700 // transcription factor activity // non-traceable author st
151856_at LanB1     CG7123    FBgn00025271.92   ---           ---            N ---               ---
141257_at Gs1       CG2718    FBgn00011421.91                 4356 // glutamate-ammonia ligase activity // inferred in hea
                                                                             Y early st 11 yolk or electronic annotation11
                                                                                                  from amnioserosa late st
                                                8652 // amino acid biosynthesis // inferredRas some ventral cellsfrom di
149217_at CG7458 CG7458       FBgn00371441.91                 8513 // organic cation porter amnioserosa cells, away, mes
                                                                             Y st 10 inferred from inferred from sequenc
                                                                                                 UASRas SM goes some Dl /
                                                5975 // carbohydrate metabolism // someactivity //electronic annotationg
150736_at CG12885 CG12885     FBgn00395231.90   ---           ---                                UAS RAS no 8 endoderm
                                                                             Y blastoderm expression, stphenotype. st
152905_at CG30344 CG30344     FBgn00503441.90   ---           ---                                ---
                                                                             Y hemocytes, st 11 head mesoderm-hemoc
147681_at CG6018 CG6018       FBgn00347361.89   ---                          Y     st 11 endoderm st 16 also gonads, SG, s
                                                                                                 ---
                                                              4091 // carboxylesterase activity // inferred from sequence ly
143829_at CadN      CG7100    FBgn00156091.89                 4872 // receptor activity // author from sequence similarity
                                                                             N ---               ---
                                                7155 // cell adhesion // non-traceable inferredstatement /// 7156 // homo/
153546_at Fim       CG8649    FBgn00242381.88                 3779 // actin binding9-10 biogenesis // inferred 11 SM and3
                                                                             Y st // inferredhead meso and start to see tr
                                                                                                   from sequence similarity ///
                                                7010 // cytoskeleton organization andfaint SG24UASRas, st from electro
154495_at CG6459 CG6459       FBgn00342591.87                 ---            Y     bacteria // inferred 14 gut
                                                                                                 ---
                                                42742 // defense response to st 11 endoderm, st from electronic annota
152642_at so        CG11121   FBgn00034601.86                 3700 // transcription factor Drosophila) // inferred from muta
                                                                             N ---               ---
                                                1744 // optic placode formation (sensuactivity // traceable author statem
148630_at Sema-5c CG5661      FBgn00286791.86                 4872 // receptor linked // inferred
                                                                             N mesodermaltransduction // inferred from e
                                                7166 // cell surface receptor activity signal --- from electronic annotation
                    CG1516
152059_at BcDNA:GH06348       FBgn00275801.86                 4736 // pyruvate //st 11 mesoderm, // inferred from sequen
                                                                             Y      inferred from sequence similarity /// 6094
                                                                                                 ---
                                                6090 // pyruvate metabolismcarboxylase activityfaint fairly amount of ba
152878_at CG8991 CG8991       FBgn00336541.86   ---           ---            Y I.s. not very --- good, repeated with gene spe
144005_at Mct1      CG3456    FBgn00235491.86                 8028 // monocarboxylic acid and amnioserosa
                                                                             inferred from electronic annotation
                                                                                                 ---
                                                6812 // cation transport //Y hemocytestransporter activity // inferred fr
153373_at CG8036 CG8036       FBgn00376071.85                 4802 // transketolase // inferred
                                                                             N ---                inferred from sequence simil
                                                6098 // pentose-phosphate shunt activity //---from electronic annotation
155162_at l(2)03709 CG15081   FBgn00105511.85   ---           ---            N ---               ---
148546_at CG6310 CG6310       FBgn00361211.84   ---           ---            Y Failed            ---
142587_at CG33099 CG33099     FBgn00530991.84   ---                          Y blastoderm ventral stripe, gastrulation in h
                                                                                                 ---
                                                              45544 // gibberellin 20-oxidase activity // inferred from seque
152680_at CG30115 CG30115     FBgn00501151.83                 5085 // guanyl-nucleotide fromRas I don't annotation and v
                                                                             Y ventral exchange factor endoderm
                                                                                                  electronic see expression in
                                                7165 // signal transduction // inferred blastoderm, st 10activity // inferred
144549_at CG3097 CG3097       FBgn00298041.83                 4182 // carboxypeptidase inferred from electronic sequenc
                                                                             N ---               ---
                                                6508 // proteolysis and peptidolysis // A activity // inferred fromannotation
143126_at dm        CG10798   FBgn00004721.82                 3677 cell cycle // blastoderm anterior and assay8361 // regu
                                                                             Y traceable author statement /// /// 3700 // t
                                                                                                   from direct primordia stays,
                                                74 // regulation of// DNA binding // inferredRas cardiac posteror endoder
142537_at CG17530 CG17530     FBgn00343401.82   ---           ---            N ---               ---
                    CG4500
154426_at BG:DS05899.1        FBgn00285191.81                  acid // long-chain-fatty-acid-CoA ligase activity // inferred fro
                                                                             N //                ---
                                                6631 // fatty4467 metabolism ---inferred from electronic annotation /// 74
141522_at rgr       CG8643    FBgn00333101.80                 3700 of transcription from PolSG24UASRas inferred from stS
                                                                             Y blastoderm wide ventral band 11 VM ande
                                                                                                  II promoter // st all along
                                                6357 // regulation// transcription factor activity // non-traceable authorA-P
152519_at CG8776 CG8776       FBgn00337641.80                 8805 // carbon-monoxide oxygenase activity // head region,
                                                                              // st 10 from electronic annotation
                                                                                                 ---
                                                6118 // electron transportY inferredsome cells internally in inferred from
144115_at cib       CG4944    FBgn00260841.80                 3779 // actin binding10-11 strong sequence it
                                                                             Y st // inferred mutant mesod similarity
                                                                                                   from
                                                7420 // brain development // inferred from --- headphenotypelooks like b
143808_at mbc       CG10379   FBgn00155131.80                 5083 // small NGTPase regulatory/interacting protein activity /
                                                                                   //
                                                902 // cellular morphogenesis--- traceable ---   author statement /// 6886 // in
151955_at Bc        CG5779    FBgn00001651.80                 4503 // monophenol monooxygenase activity // inferred from
                                                                             Y hemocytes author statement /// 9611 // r
                                                6952 // defense response // non-traceable---
          Act87E
149844_f_at         CG18290   FBgn00000461.80                 5200 // structural constituent of cytoskeleton // inferred from
                                                                             N ---               ---
                                                7010 // cytoskeleton organization and biogenesis // inferred from seque
143541_at ewg       CG3114    FBgn00054271.79                 3677 development //// inferredRas gone from SM, CNS, /// 3
                                                                             Y st inferred from electronic and CNS the7
                                                                                                   from sequence similarity ///
                                                7398 // ectoderm // DNA binding11-14 lateral SM and VM annotationpres
                    CG31022
141636_at PH4alphaEFB         FBgn00397761.79                 4656 // procollagen-proline 4-dioxygenase activity // inferred
                                                                             N ---               ---
                                                18401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred
151016_at CG9603 CG9603       FBgn00405291.78                 4129 // cytochrome-c oxidase ---
                                                                              // Failed          activity // similarity /// 6123 //
                                                6118 // electron transportN inferred from sequence inferred from sequen
141664_at Hsp60     CG12101   FBgn00152451.78                 3754 // chaperone activity // inferred similarity /// 6457 // pro
                                                                             N ---               ---
                                                6457 // protein folding // inferred from sequence from electronic annotat
143663_at Trp1      CG4758    FBgn00115841.77                 ---            Y amnioserosa       ---
                                                6614 // SRP-dependent cotranslational membrane targeting // inferred f
154837_at CG5002 CG5002       FBgn00342751.77                 15381 // high affinity sulfate permease end, st 10 posterior e
                                                                              // blastoderm electronic annotation /// 6820
                                                                                                 ---
                                                6790 // sulfur metabolismY inferred from posterior activity // inferred from
141802_at vimar     CG3572    FBgn00229601.76                 5085 // signaling cascade // inferred from activity // annota
                                                                             N ---               ---
                                                7242 // intracellular guanyl-nucleotide exchange factor electronic inferred
141487_at RpI135    CG4033    FBgn00032781.76                 3676 // nucleic blastoderm some stained some not, STVM
                                                                              Pol I binding SG24UASRassequence simil
                                                                                                  inferred from st 11 some 10
                                                6360 // transcription fromY acidpromoter////inferred from electronic annota
143207_at kn        CG10197   FBgn00013191.76                 3704 // specific RNA polymerase II transcription from activi
                                                                             N ---               ---
                                                6367 // transcription initiation from Pol II promoter // inferred factorelectr
151334_at CG11358 CG11358     FBgn00408591.76   ---           ---                                ---
                                                                             Y st 11 only a few ventral cells in head, st 16
154410_at CG12030 CG12030     FBgn00351471.76                 3978 metabolismst 11 amnioserosa and statement
                                                                             Y     // non-traceable author // inferred
                                                                                                 ---
                                                6012 // galactose // UDP-glucose 4-epimerase activitySG prim from se
142226_at Sap-r     CG12070   FBgn00004161.76                  metabolism // inferred from electronic annotation /// 6810 //
                                                6629 // lipid ---                                ---
                                                                             Y hemocytes and some cells of amnioseros
152589_at Con       CG7503    FBgn00057751.75                 5198 // structural molecule activity // inferred from electronic
                                                                             N ---               ---
                                                7155 // cell adhesion // non-traceable author statement /// 7156 // homo
146461_at CG10621 CG10621     FBgn00327261.74                 16205 biosynthesis // inferred---
                                                                             Y amnioserosafrom electronic annotation
                                                8652 // amino acid// selenocysteine methyltransferase activity // inferred
141631_at CG33066 CG33066     FBgn00530661.74   ---           ---                                ---
                                                                             Y nothing, maybe something in gut at st13
141837_at Ppn       CG33103   FBgn00031371.73   ---           ---            N ---               ---
149218_at CS-2      CG7464    FBgn00290911.73   ---                          synthase only a --- inferred from sequence
                                                                                                  //
                                                              4100 // chitin Y st 11 activityring in the posterior gut sim
152899_at smi35A CG4551       FBgn00169301.72                 4672 // protein kinase activity // non-traceable author statem
                                                                             Y     st 10 amnioserosa st 11 amnioserosa VM
                                                                                                 ---
                                                6468 // protein amino acid phosphorylation // non-traceable author state
151758_at CG11100 CG11100     FBgn00372071.72   ---           ---                                ventral band, st 9-10 endoder
                                                                             Y gastrulation Ras cardiac expression in clu
          s
151520_i_at pir     CG10076   FBgn00034751.71                 3779 // actin binding // non-traceable author segment borde
                                                                             Y st10-13 dorsal inferred from mutant /// 37
                                                                                                 ---
                                                7304 // eggshell formation (sensu Insecta) // ectoderm instatementpheno
143407_at vn        CG10491   FBgn00039841.71                 5154 // epidermal ---
                                                                             N growth factor receptor binding // inferred f
                                                                                                 ---
                                                6916 // anti-apoptosis // traceable author statement /// 7173 // epiderma
154772_at CG3850 CG3850       FBgn00337821.71                 30528 // transcriptionnucleotide activity // inferred metabolism
                                                                             Y st regulator and nucleic acid from electr
                                                                                                 Ras gone.
                                                6139 // nucleobase, nucleoside,11 VM, faint ventral myoblasts and even
                    CG16707
148486_at BEST:GH15083        FBgn00458231.70   ---           ---            N ---               ---
148296_at bin       CG18647   FBgn00457591.70                 3700 // transcription factor activity
                                                                             N ---                inferred from from sequence
                                                1710 // mesoderm cell fate commitment //--- // inferred mutant phenoty
153966_at CG9641 CG9641       FBgn00314831.70   ---           ---            N ---               ---
149126_at Las       CG5231    FBgn00291581.70                 3824 // catalytic activity // inferred from electronic from elec
                                                                             N Failed            ---
                                                6731 // coenzyme and prosthetic group metabolism // inferredannotation
149504_at CG11737 CG11737     FBgn00375921.69   ---           ---            Y Failed            ---
151989_at CG3036 CG3036       FBgn00316451.68                 5436 // sodium:phosphate symporter electronicinferred
                                                                             Y ventral expression activity // annotation /
                                                                                                 ---
                                                5975 // carbohydrate metabolism // inferred from in blastoderm onlyfrom
149857_at CG31469 CG31469     FBgn00514691.68   ---           ---            Y Failed            ---
148523_at CG32062 CG32062     FBgn00520621.68   ---                          Y ---
                                                              3723 // RNA binding // inferred---   from sequence similarity
146305_at Vha68-2 CG3762      FBgn00203671.66                 8553 // metabolism // inferred---
                                                                             N ---                from activity, phosphorylative
                                                6144 // purine basehydrogen-exporting ATPase electronic annotation ///
141370_at ppl       CG7758    FBgn00279451.66                 16787 // hydrolase activity body
                                                                             Y st 11 fat // inferred from electronic 12 and
                                                                                                  sequence similarity
                                                6546 // glycine catabolism // inferred from ---primordium or VM stannotat
152178_at CG8327 CG8327       FBgn00377231.66   ---                          Y st 11 endoderm st 14 gut and fat sequenc
                                                                                                 ---
                                                              4766 // spermidine synthase activity // inferred frombody
152874_at CG30015 CG30015     FBgn00500151.66   ---           ---            N ---               ---
147513_at CG15128 CG15128     FBgn00344671.66   ---           ---            Y ---               ---
154265_at CG8258 CG8258       FBgn00333421.65                 3754 // chaperone activity electronic from sequence similarit
                                                                             Y st from // SM, endoderm st
                                                                                                 ---
                                                6457 // protein folding // inferred11 fuzzyinferred annotation13 SM VM
153566_at CG6805 CG6805       FBgn00341791.65                  metabolism // inferred from electronic annotation /// 11 hem
                                                                             Y hemocytes, ---     phosphatase activity 7010 //
                                                6629 // lipid 46030 // inositol trisphosphatest9-10 head meso. st // non-tr
143668_at La        CG10922   FBgn00116381.64                 3718 // Pol III transcription termination factor activity
                                                                              // ---             ---
                                                6399 // tRNA metabolismN inferred from electronic annotation // inferr
151837_at Ca-alpha1DCG4894    FBgn00019911.64                 5245 // transport // non-traceable
                                                                             N ---               channel activity // inferred from
                                                6816 // calcium ion voltage-gated calcium --- author statement /// 6936
144827_at CG15211 CG15211     FBgn00302341.64   ---           ---            N ---               ---
146503_at TepIV     CG10363   FBgn00411801.64                 4866 // endopeptidaseanterior ---
                                                                             Y st 9 inhibitor activity // inferred// inferred fr
                                                                                                 endoderm, st 10 from sequ
                                                6961 // antibacterial humoral response (sensu Protostomia)anterior and
153278_at Cct5      CG8439    FBgn00106211.64                 3754 // chaperone activity sequence from sequence st 14 S
                                                                             Y st from // inferred similarity
                                                                                                 ---
                                                6457 // protein folding // inferred11 panmesodermal, endoderm, similarit
148320_at unc-13-4A CG32381   FBgn00357561.63                 ---            Y Failed            ---
                                                7269 // neurotransmitter secretion // non-traceable author statement ///
149979_at CG4560 CG4560       FBgn00383691.63                 3779 // actin binding // inferred Ras gone.
                                                                             Y blastoderm general expression, st electro
                                                                                                   from sequence similarity /// 5
                                                7010 // cytoskeleton organization and biogenesis // inferred from8 panm
143885_at how       CG10293   FBgn00173971.63                 3723 // RNA binding // inferred---
                                                                             N ---                  and direct assay /// 3723 // R
                                                6139 // nucleobase, nucleoside, nucleotidefrom nucleic acid metabolism
                    CG31022
150892_at PH4alphaEFB         FBgn00397761.62                 4656 // procollagen-proline 4-dioxygenase activity // inferred
                                                                             N ---               ---
                                                18401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred
153030_at CG9674 CG9674       FBgn00366631.62                 4355 // glutamate synthase (NADPH+) activity annotationfro
                                                                             Y     st 10 midlinefrom or st 11 goes away st 1
                                                                                                    glia electronic // inferred
                                                8652 // amino acid biosynthesis // inferredUASRasCNS, amnioserosa a
145956_at CG5958 CG5958       FBgn00319131.62                 5386 // carrier activity // inferredst 11 amnioserosa from elec
                                                                             Y hemocytes?, from electronic annotation /
                                                                                                 ---
                                                6731 // coenzyme and prosthetic group metabolism // inferred and hemo
149077_at CG8025 CG8025       FBgn00369161.61   ---                          Y Failed            ---
                                                              175 // 3'-5'-exoribonuclease activity // inferred from sequenc
152727_at CG7224 CG7224       FBgn00319711.61   ---           ---            N ---               ---
153055_at Pdp1      CG17888   FBgn00166941.61                 3677 // DNA binding // inferred---
                                                                             N ---                 from physical interaction /// o
                                                6350 // transcription // traceable author statement /// 6357 // regulation 3
153313_at Rac2      CG8556    FBgn00140111.60                 3925 // small Nan epithelium // ---
                                                                                  ---             traceable author statement a
                                                2009 // morphogenesis ofmonomeric GTPase activity // non-traceable //
143628_at mtSSB     CG4337    FBgn00104381.60                 3697 genome maintenance binding // inferred fromphenoty
                                                                             N ---
                                                2 // mitochondrial// single-stranded DNA //---    inferred from mutant sequen
                    CG2930
151495_at BcDNA:GH06717       FBgn00284911.60   ---           ---            Y amnioserosa       ---
141692_at CG33206 CG33206     FBgn00525871.60   ---           ---                                ---
                                                                             Y st 11 endoderm, SG very strong, anal pad
152264_at pcs       CG7761    FBgn00339881.59                 17124 // SH3Ndeath inferred inferred from sequence
                                                                                  ---            ---
                                                12501 // programmed celldomain//binding // from sequence similaritysimi
146481_at CG10685 CG10685     FBgn00327621.59                 3676 // nucleic st binding --- and general in ectoderm (
                                                                              Pol I 10 endoderm    inferred from sequence simil
                                                6360 // transcription fromY acidpromoter////inferred from electronic annota
146844_at CG30349 CG30349     FBgn00503491.59   ---           ---                                ---
                                                                             Y st 11 panmesodermal, endoderm, SG, hig
148950_at frc       CG3874    FBgn00426411.59                 5457 // GDP-fucose transporter activity // inferred from direc
                                                                             Y Failed            ---
                                                1745 // compound eye morphogenesis (sensu Drosophila) // inferred fro
                    C
144076_at EG:22E5.11 G4322    FBgn00256311.59                 8502 coupled receptor
                                                                             N receptor activity   signaling pathway sequence
                                                7186 // G-protein // melatonin --- protein--- // inferred from // inferred
149917_at CG14856 CG14856     FBgn00382611.58                 8513 // organic amnioserosa
                                                                              inferred from electronic inferred from sequenc
                                                                                                 ---
                                                6812 // cation transport //Y cation porter activity // annotation /// 6858 // e
148173_at CG15019 CG15019     FBgn00355411.58   ---           ---                                ---
                                                                             Y st 10 endoderm, st 11 epidermis gral. exp
153858_at chic      CG9553    FBgn00003081.58   ---           ---                                SG24UASRas st11 don't hea
                                                                             Y blastoderm expression, st9-10 ventralsee
153230_at CG32527 CG32527     FBgn00525271.58   ---           ---            N ---               ---
                    CG31911
152416_at BEST:LD04971        FBgn00265851.58                 15397 // equilibrativenucleotide and nucleic acid metabolism
                                                                             Y st nucleoside transporter, nitrobenzyl-thio
                                                6139 // nucleobase, nucleoside,11 on amnioserosa ---
143523_at bap       CG7902    FBgn00048621.58                 3677 // DNA binding // non-traceable author statement /// 37
                                                                             N ---
                                                1710 // mesoderm cell fate commitment //---       traceable author statement //
142790_at CG32813 CG32813     FBgn00528131.58   ---           ---            N ---               ---
148689_at CG11267 CG11267     FBgn00363341.57                 3754 // chaperone activity // inferred from sequence similarit
                                                                             Y endoderm from
                                                6458 // 'de novo' protein folding // inferred --- sequence similarity
145879_at CG31640 CG31640     FBgn00516401.57                 4716 // receptor inferred protein tyrosinesimilarity
                                                                             Y st 9 endoderm,    sequence kinase activity // in
                                                7165 // signal transduction //signaling from--- st 10 endoderm, ectoderm
144536_at Tre1      CG3171    FBgn00466871.56                 8527 coupled receptor protein---
                                                                             N ---                 inferred pathway // inferred
                                                7186 // G-protein // taste receptor activity // signalingfrom mutant phenot
141738_at CG9706 CG9706       FBgn00366621.55                 8521 acetyl-CoA transporter---
                                                                             N ---                annotation
                                                6810 // transport // inferred from electronic activity // inferred from seque
          Act79B
143060_f_at         CG7478    FBgn00000451.55                 5200 // structural constituent of cytoskeleton // inferred from
                                                                             N ---              ---
                                                7010 // cytoskeleton organization and biogenesis // inferred from seque
142579_at NHP2      CG5258    FBgn00291481.55   ---           ---                               UAS RAS st 11 endoderm, s
                                                                             Y st 9-10 panmesodermal andreduced SM,
153364_at CG9232 CG9232       FBgn00318451.54                 8108 metabolism--- non-traceable author uridylyltransferas
                                                                             N     //           ---
                                                6012 // galactose // UDP-glucose-hexose-1-phosphatestatement
154242_at CG2206 CG2206       FBgn00299841.54   ---           ---                               13
                                                                             Y st 11 VM, st --- some SM?
152508_at CG13784 CG13784     FBgn00318971.54   ---           ---                               ---
                                                                             Y st 10-11 epidermis, very faint VM or fat bo
148970_at CG7460 CG7460       FBgn00367491.54   ---                          Y st 11 very faint inferred from embryos, an
                                                                                                ---
                                                              16491 // oxidoreductase activity //meso in some electronic I.s
154624_at nop5      CG10206   FBgn00261961.54                 3723 // RNA N non-traceable ---
                                                                              // ---              from statement /// 16072
                                                6364 // rRNA processingbinding // inferredauthorelectronic annotation// r
151777_at CG5886 CG5886       FBgn00393791.54   ---           ---            Y st 11 SM st 13 SM---
141478_at Cyp1      CG9916    FBgn00044321.54                 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred
                                                                             N ---              ---
                                                6457 // protein folding // non-traceable author statement /// 6605 // prote
155007_at CG32428 CG32428     FBgn00524281.54   ---           ---            N ---              ---
153367_at CG3132 CG3132       FBgn00379771.54                 4565 // beta-galactosidase activity // expression pattern /// 4
                                                                             N ---              ---
                                                35071 // salivary gland cell death // inferred frominferred from sequence
                    CG10687
152066_at BcDNA:GH06451       FBgn00284921.53   ---           ---                               UAS Ras but but don't see a
                                                                             Y mesoderm expressiondonedifficult to desc
143565_at Eip63E    CG10579   FBgn00056401.53                 4674 cell cycle // ---
                                                                             N inferred from kinase activity // inferred fro
                                                                                                ---
                                                74 // regulation of// protein serine/threonine electronic annotation /// 646
154756_at ras       CG1799    FBgn00032041.52                 3938 // metabolism // inferred---
                                                                             N ---               from electronic annotation ///
                                                6144 // purine baseIMP dehydrogenase activity // inferred from sequenc
142631_at bru-2     CG31761   FBgn00439041.52   ---           ---            N ---              ---
151642_at stich1    CG17100   FBgn00169411.52                 ---            Y anterior and ---  posterior endoderm primordiu
                                                7422 // peripheral nervous system development // traceable author state
141640_at ap        CG8376    FBgn00000991.52                 3704 // specific RNA polymerase II transcription factor activi
                                                                             N ---              ---
                                                6350 // transcription // inferred from mutant phenotype /// 6350 // transcr
154805_at twf       CG3172    FBgn00382061.52                 3779 // actin binding // electronic annotation /// 8407 // /// 37
                                                                             N ---              ---
                                                6928 // cell motility // inferred from non-traceable author statement bristle
152518_at CG8231 CG8231       FBgn00306811.51   ---           ---                               Ras and st 10 wt it's difficult
                                                                             Y blastoderm pole cellsDl likeendoderm-hing
148786_at CG6735 CG6735       FBgn00364721.51                 5200 // structural constituent of cytoskeleton st 12 endoderm
                                                                             Y st 10 endoderm, Ras inferredchange
                                                                                                Uas st // and // from electro
                                                7010 // cytoskeleton organization and biogenesis 11doesn't inferred from
146263_at CG16969 CG16969     FBgn00323901.51   ---           ---            Y Failed           ---
152315_at mei-P26 CG12218     FBgn00262061.51                 30528 //       Y amnioserosa activity // inferred from electr
                                                                                       from Pol--- background (although it's
                                                                                                   or
                                                6357 // regulation of transcription regulator II promoter // inferred from e
144714_at CG1994 CG1994       FBgn00300621.51   ---           ---                                UASRas and SM very reduc
                                                                             Y st 9-10 panmesoderm st 11 endoderm earl
151309_at CG32372 CG32372     FBgn00523721.50                 ---            N ---              ---
                                                7155 // cell adhesion // inferred from electronic annotation /// 19226 // tr
141658_at CG5853 CG5853       FBgn00321671.50                  metabolism // inferred from electronic annotation /// 6820 //
                                                                             N ---              ---
                                                6629 // lipid 4009 // ATP-binding cassette (ABC) transporter activity // inf
141279_at CG12006 CG12006     FBgn00354641.50                 16740 // transferase activity // inferred fromSM VM and 649
                                                                             Y inferred fromVM, late inannotation /// rem
                                                                                                   electronic electronic annot
                                                6464 // protein modification // St 10-e st11Ras gonest11-13some VMSM
153855_at mae       CG15085   FBgn00343731.50   ---           ---                               ---
                                                                             Y mesectoderm and endoderm
146963_at CG7637 CG7637       FBgn00335481.49   ---           ---                               ---
                                                                             Y st 11 mesoderm very faint and there's a lo
143038_at CG11100 CG11100     FBgn00372071.49   ---           ---            N ---              ---
145878_at CG31640 CG31640     FBgn00516401.49                 4716 // receptor inferred protein
                                                                             Y same than #201!   sequence kinase activity // in
                                                7165 // signal transduction //signaling from--- tyrosinesimilarity
141807_at bsf       CG10302   FBgn00326791.49   ---                          Y st 11 endoderm, meso very direct assay //
                                                                                                 //
                                                              3730 // mRNA 3'-UTR binding --- inferred from faint, anal pad
145534_at EP2237 CG4427       FBgn00433641.49                 16563 // transcription from Pol--- activity // inferred from e
                                                                             Y st 11 activator promoter
                                                                                                  II
                                                6357 // regulation of transcriptional on amnioserosa // inferred from sequ
153111_at Tsp86D CG4591       FBgn00378481.49   ---           ---                                and SM, CNS st now the CN
                                                                             Y st 11-13 VMRas and Dl gone,14 SM starts
145877_at CG31640 CG31640     FBgn00516401.48                 4716 // receptor inferred protein tyrosinesimilarity
                                                                             Y same than 201     sequence
                                                7165 // signal transduction //signaling from--- and 233!kinase activity // in
141387_at mge       CG14981   FBgn00354731.48   ---                          Y st 11 endoderm, maybe some SM but high
                                                                                                ---
                                                              15450 // protein translocase activity // inferred from sequenc
147493_at CG9416 CG9416       FBgn00344381.48   ---           ---            Y                  ---
                                                                                   st 11 VM only st 13 muscle attachment si
145920_at CG11188 CG11188     FBgn00318511.48   ---           ---            Y     Failed       ---
143007_at Sop2      CG8978    FBgn00019611.48                 3779 // actin binding // inferred---
                                                                             N ---                from sequence // inferred fro
                                                1745 // compound eye morphogenesis (sensu Drosophila) similarity /// 5
146269_at CG14946 CG14946     FBgn00324051.48                 16491 // oxidoreductase activity // inferred from sequence si
                                                                              // Failed         ---
                                                7601 // visual perception Y inferred from electronic annotation
                    CG11844
141666_at BcDNA:SD06613       FBgn00462141.48   ---           ---                               ---
                                                                             Y st 11-14 endoderm, faint meso. st 15 gut,
153358_at Nmd3      CG3460    FBgn00235421.48                 3723 // RNA binding // SM, endoderm and from sequence s
                                                                             Y st11 inferred---   from sequence
                                                55 // ribosomal large subunit-nucleus export // inferred SG similarity /// 5
153924_at 14-3-3zetaCG17870   FBgn00049071.47                 4863 cell cycle // st 9-10 endoderm and panmesoderm st 1
                                                                             Y inferred from electronic annotation /// pro
                                                                                                Ras not affected, although SM
                                                74 // regulation of// diacylglycerol-activated/phospholipid-dependent 658
141653_at EG:22E5.3CG4061     FBgn00256301.47                 3723 // RNA binding // spliceosome // inferred from electroni
                                                                             Y
                                                398 // nuclear mRNA splicing,Failed               from electronic annotation ///
                                                                                    via inferred---
143289_at Acp70A CG17673      FBgn00030341.47                 5179 // hormone Failed // non-traceable author statemen
                                                                              biosynthesis      ---
                                                6718 // juvenile hormone Y activity // non-traceable author statement
141356_at CG7430 CG7430       FBgn00367621.47                 4148 // acid cycle // dehydrogenase activity //some meso th
                                                                             Y st inferred from sequence inferred from
                                                                                                 Ras gone,
                                                6099 // tricarboxylicdihydrolipoyl 11-13 endoderm, there'ssimilarity /// 654
149869_at CG9922 CG9922       FBgn00381961.47   ---           ---            Y Failed           ---
153615_at CG1637 CG1637       FBgn00302451.47                 3993 // acid phosphatase activity // inferred from sequence s
                                                                             Y amnioserosa      ---
                                                6796 // phosphate metabolism // inferred from electronic annotation
149913_at CG7552 CG7552       FBgn00382551.47   ---           ---            N ---              ---
143374_at T-cp1     CG5374    FBgn00036761.47                 3754 // chaperone activity author statement
                                                                            Y st 9 endoderm stnot affected,
                                                                                                 Ras 11-13 sequence similarit
                                                6457 // protein folding // non-traceable// inferred from SM VM, SG, anal
154099_at car       CG12230   FBgn00002571.47                 149 // SNARE binding
                                                                            N ---           inferred from mutant phenotype
                                                                                                 ---
                                                6727 // ommochrome biosynthesis////inferred from sequence similarity ///
154732_at CG6454 CG6454       FBgn00391871.47   ---           ---                                Ras upregulated in intensity a
                                                                            Y st 11 cardiac primordium, dorsal, lateral a
141787_at l(2)tid   CG5504    FBgn00021741.47   ---           ---           N ---                ---
141261_at CG1671 CG1671       FBgn00334541.46   ---                         N ---                ---
                                                              3847 // 1-alkyl-2-acetylglycerophosphocholine esterase activ
154798_at CG18766 CG18766     FBgn00421111.46   ---           ---                                ---
                                                                            Y st 11 very faint meso, lateral and ventral m
147279_at Asph      CG8421    FBgn00340751.46                 4597 // peptide-aspartate beta-dioxygenase activity // pathw
                                                                            Y st 8-9 panmesodermal, st signaling and V
                                                                                                 ---
                                                7169 // transmembrane receptor protein tyrosine kinase11-15 SMnon-tr
153601_at Fib       CG9888    FBgn00030621.46                  primary transcript---
                                                                            N      processing //from electronic annotation
                                                6365 // 35S 3723 // RNA binding // inferred---inferred from sequence sim
143919_at dve       CG5799    FBgn00203071.45                 3680 // AT DNA // inferred from mutant phenotype /// 45449
                                                                            N ---                ---
                                                7476 // wing morphogenesisbinding // inferred from sequence similarity
154111_at Rpn2      CG11888   FBgn00286921.45                 4175 cell cycle // Failed from electronic annotation /// 650
                                                                            Y inferred            //
                                                74 // regulation of// endopeptidase activity ---inferred from direct assay //
153984_at Traf1     CG3048    FBgn00263191.45                 5102 // receptor binding // inferred from electronic intensity p
                                                                            Y early st. 10 widely meso; blastoderm meso
                                                                                                 Ras upregulated in annotatio
                                                2168 // larval development (sensu Insecta) // inferred from expression a
150993_at CG11076 CG11076     FBgn00399291.45   ---           ---           N ---                ---
141241_at CG8351 CG8351       FBgn00376321.45                 3754 // chaperone activity electronic annotation
                                                                            Y st from inferred from sequence similarit
                                                                                                 ---
                                                6457 // protein folding // inferred11 SM//but there's a lot of background o
145146_at CG8198 CG8198       FBgn00306771.45   ---           ---                                ---
                                                                            Y st 11 faint SM bands st 13 very strong SM
147231_at hbs       CG7449    FBgn00290821.45                 ---           N ---
                                                7165 // signal transduction // inferred from---    electronic annotation /// 7398
152398_at CG10631 CG10631     FBgn00328171.45   ---           ---           N ---                ---
141216_at CG12096 CG12096     FBgn00304571.45   ---           ---           Y Failed             ---
154807_at yps       CG5654    FBgn00229591.45   ---           ---                                Ras and Dl there's expression
                                                                            Y st9-13, epidermis, endoderm, mesod., CN
142014_at CG5047 CG5047       FBgn00370081.44   ---           ---           Y Failed             ---
141458_at CG9342 CG9342       FBgn00329041.44                  metabolism // inferred amnioserosa, also later annotationb
                                                                            Y st 11 inferred from annotation and fat
                                                                                                 ---
                                                6629 // lipid 5386 // carrier activity //from electronicelectronic on/// 6869 ///
145670_at CG3131 CG3131       FBgn00314641.44                 4601 // peroxidase activity // electronic annotation /// 6800
                                                                              // Failed          ---
                                                6118 // electron transportY inferred frominferred from electronic annota/
153166_at CG4511 CG4511       FBgn00378431.44   ---                         Y st // inferredRas gone SM bands st 13
                                                                                                  from sequence similarity
                                                              5524 // ATP binding 6 pole cells, st11-13although at VM. he
151876_at Reg-2     CG3200    FBgn00167151.44   ---           ---                                ---
                                                                            Y late st 11 row of cells to either side of CNS
                    CG3164
145511_at BEST:CK02656        FBgn00256831.44                  metabolism // inferred from electronic annotation /// 6869 //
                                                                            N ---                ---
                                                6629 // lipid 4009 // ATP-binding cassette (ABC) transporter activity // inf
                    CG12690
144337_at CHES-1-like         FBgn00295041.44   ---           ---                                Ras 10 starts VM,
                                                                            Y st 9 endoderm stgone clearly. SG st 11-s
141460_at CG8034 CG8034       FBgn00310111.44   ---           ---                                ---
                                                                            Y st 11 head meso., SM? Bad I.s.
153435_at blw       CG3612    FBgn00112111.44                 8553 // hydrogen-exporting ATPase activity,acid metabolism
                                                                            Y st nucleotide and 12-16 phosphorylative
                                                                                                 ---
                                                6139 // nucleobase, nucleoside,11 endoderm st nucleicendoderm and h
141774_at CG12202 CG12202     FBgn00310201.43   ---                         N ---                ---
                                                              4596 // peptide alpha-N-acetyltransferase activity // inferred
148089_at CG14966 CG14966     FBgn00354151.43   ---           ---           Y Failed             ---
154112_at CG12207 CG12207     FBgn00382201.43   ---           ---                                ---
                                                                            Y st 11 posterior endoderm, ectoderm or ba
141253_at CG11887 CG11887     FBgn00335401.43   ---           ---                                ---
                                                                            Y st 11 endoderm, faint meso.?
144716_at CG10648 CG10648     FBgn00300671.43                 ---           Y faint // inferred
                                                6461 // protein complex assembly meso. --- from electronic annotation
143000_at CG5525 CG5525       FBgn00324441.43                 3754 // chaperone activity // inferred from sequence similarit
                                                                            N ---                ---
                                                6457 // protein folding // inferred from electronic annotation
141355_at CG8031 CG8031       FBgn00381101.43   ---           ---           Y Failed             ---
143658_at mtacp1    CG9160    FBgn00113611.43                 3954 // NADH dehydrogenase---
                                                                            N
                                                6120 // mitochondrial electron---                 activity ubiquinone // inferred
                                                                                   transport, NADH to // inferred from seque
153982_at CctgammaCG8977      FBgn00150191.42                 3754 // chaperone activity // inferred similarity ///effect, // pro
                                                                            Y starts in endoderm st 11-13 SM and althou
                                                                                                 Ras don't see an 6457 VM ,
                                                6457 // protein folding // inferred from sequence from sequence similarit
142561_at CG2245 CG2245       FBgn00398711.42   ---           ---                                ---
                                                                            Y st11-13 endoderm, meso. very faint, st 15
          drpr
151918_s_at         CG2086    FBgn00275941.42                 4872 // receptor activitymeso. --- from electronic annotation
                                                                            Y st 10 // inferred  bands, st 11 meso. bands, st
                                                7155 // cell adhesion // inferred from sequence similarity /// 7165 // signa
154335_at CG8286 CG8286       FBgn00377181.42                 4860 // protein kinase inhibitorelectronic annotation /// 19221
                                                                            Y st 11 head ---       activity // st 12 ring gland
                                                6952 // defense response // inferred frommeso., SG inferred from seque
146191_at CG6724 CG6724       FBgn00322981.42   ---           ---           Y st 11 maybe---      some mesoderm or amniose
147104_at CG8816 CG8816       FBgn00337541.42   ---           ---           Y Failed             ---
142497_at CG15561 CG15561     FBgn00398291.42   ---           ---           Y Failed             ---
152402_at Nacalpha CG8759     FBgn00175651.42   ---           ---                                Ras slight reduction in expres
                                                                            Y st 11-14 endoderm, SM very faint and VM
143848_at S6k       CG10539   FBgn00158061.42                 4674 // protein inferred from electronic annotation ///st 15 gu
                                                                             //    st 11 endoderm panmesodermal, 6468 /
                                                                                                 ---
                                                165 // MAPKKK cascade Y serine/threonine kinase activity // non-traceab
145362_at CG8002 CG8002       FBgn00310061.42   ---           ---           N ---                ---
154421_at fax       CG4609    FBgn00141631.42                 ---           Y st from genetic interaction /// 7409 // CNS
                                                                                                 ---
                                                7409 // axonogenesis // inferred 11 VM ectoderm and CNS later on axon
          C
148110_i_at G14970 CG14970    FBgn00354461.42                 3743 // translationstinferred frompitsdon't SG, any difference
                                                                            Y        11 tracheal activitysee no mesoderm
                                                                                                  Ras and // similarity
                                                6413 // translational initiation //initiation factorsequence inferred from seq
146390_at CG12288 CG12288     FBgn00326201.41   ---                         Y early st 11 endoderm , SM, SG, st 13 SM8
                                                              3723 // RNA binding // inferred---   from sequence similarity ///
141815_at CG12013 CG12013     FBgn00354381.41                 4601 // peroxidase activity // inferred from direct assay /// 46
                                                                            Y amnioserosa        ---
                                                6952 // defense response // inferred from electronic annotation /// 6982
151761_at MTF-1     CG3743    FBgn00403051.41                 3700 // transcription factor activity // non-traceable // regulat
                                                                            N ---                ---
                                                6350 // transcription // non-traceable author statement /// 6357 author st
149302_at CG31536 CG31536     FBgn00515361.41                 3779 // actin binding // inferred---
                                                                            N ---                  from sequence similarity /// 5
                                                7010 // cytoskeleton organization and biogenesis // inferred from electro
153089_at CG17492 CG17492     FBgn00327421.41   ---                         Y blastoderm expresssion, inferredVM, vent
                                                                                                  Ras st 10 // st 9-10 expand
                                                              5057 // receptor signaling protein activity VM clearlyfrom ele
152923_at CG10585 CG10585 FBgn00370441.41         ---                          Y st 11 dorsal --- meso. (cardiac?), ectoderm a
                                                                10 // trans-hexaprenyltranstransferase activity // inferred from
142531_at eIF-2beta CG4153 FBgn00049261.41                      49 // of translation initiation ternaryauthor st 13non-traceabl
                                                                               Y st non-traceable complex // maybe 3743
                                                                                                  ---
                                                  1677 // formationtRNA binding //11 endoderm and SG statement /// som
151791_at CG3427 CG3427 FBgn00331021.41                         17132 // cyclic inferred from electronic annotation
                                                                                // ---            ---
                                                  165 // MAPKKK cascade Nnucleotide-dependent guanyl-nucleotide exch
154677_at pelo       CG3959 FBgn00112071.41                     ---            Y      inferred from sequence similarity
                                                                                                  ---
                                                  6412 // protein biosynthesis // st 11 endoderm? St 13 faint SM /// 7054
153823_at Pmm45A CG8073 FBgn00333771.41                         4615 // phosphomannomutase activity // electronic annotatio
                                                                               N ---              ---
                                                  5996 // monosaccharide metabolism // inferred from inferred from seque
154422_at CG32344 CG32344 FBgn00523441.40                       3676 // nucleic acid 11 panmesodermal, SG, endoderm st 1
                                                                               Y st nucleotide and nucleic acid metabolism
                                                                                                  ---
                                                  6139 // nucleobase, nucleoside,binding // inferred from electronic annota
154076_at CG6751 CG6751 FBgn00335621.40           ---                          Y starts in endodermtranscription and althou
                                                                                                  Ras II st see an effect, VM ,
                                                                16251 // general RNA polymerase don't 11-13 SM factor acti
143233_at Lcp2       CG8697 FBgn00025331.40       ---                          Y Failed           ---
                                                                8010 // structural constituent of larval cuticle (sensu Insecta
151848_at CG9664 CG9664 FBgn00315151.40                          metabolism // inferred from electronic annotation ventral ce
                                                                               Y st cassette (ABC) transporter activity // //
                                                                                                  ---
                                                  6629 // lipid 4009 // ATP-binding 10-11 head meso st 12 some /// 6869 inf
152995_at CG18316 CG18316 FBgn00332611.40         ---           ---            Y Failed           ---
152232_at CG8728 CG8728 FBgn00332351.40                         4240 // mitochondrial processing peptidase activity // 6508
                                                                                 // endoderm ---
                                                  6118 // electron transportY inferred from electronic annotation /// inferre/
                     C
143998_at EG:171E4.2 G3095 FBgn00235321.40        ---           ---                               ---
                                                                               Y strong VM but little or no SM
143742_at Rab5       CG3664 FBgn00140101.40                     3925 // small Y st 11 onGTPase activity CNS
                                                                               monomeric endoderm and // architecture se
                                                                                                  ---
                                                  6325 // establishment and/or maintenance of chromatininferred from // in
145680_at CG31694 CG31694 FBgn00516941.40                       5102 // receptor bindingSM and endoderm
                                                                               Y st 11 electronic annotation /// 7398 // ect
                                                                                                  ---
                                                  7275 // development // inferred from // inferred from electronic annotatio
150379_at CG6937 CG6937 FBgn00389891.40           ---                          Y st // inferredRas doesn't change.
                                                                                                    from sequence similarity
                                                                3723 // RNA binding9-10 endoderm faint panmesoderm, SG
154397_at CG8531 CG8531 FBgn00339181.40                         3754 // chaperone activity // inferred from electronic to pads,
                                                                               Y st from endoderm, meso,difficult annotat
                                                                                                  Ras and Lmd SG, 19538 // p
                                                  6457 // protein folding // inferred11-13 electronic annotation ///anal say b
          Hmgs
142736_s_at          CG4311 FBgn00106111.40                     4421 // hydroxymethylglutaryl-CoA electronic annotation
                                                                               Y mesoderm? ---     endoderm?
                                                  8203 // cholesterol metabolism // inferred from synthase activity // inferre
153129_at RpI1       CG10122 FBgn00199381.40                    3676 // nucleic st binding Ras mostly gone
                                                                                 Pol I 11-13 SM and VM, from sequence simil
                                                                                                   inferred endoderm and SG,
                                                  6360 // transcription fromY acidpromoter////inferred from electronic annota
149982_at CG31150 CG31150 FBgn00511501.40         ---           ---                               ---
                                                                               Y st 10-11 head meso., hemocytes st 16 fat
146130_at CG4901 CG4901 FBgn00321941.39                         4004 // ATP-dependent RNA helicase activity // inferred from
                                                                               N ---              ---
                                                  391 // U2-type spliceosome dissembly // inferred from sequence similar
143809_at CG33197 CG33197 FBgn00531971.39                       3676 nucleic system development // traceable author state
                                                                               N ---              ---
                                                  7422 // peripheral//nervous acid binding // non-traceable author stateme
151677_at CG32479 CG32479 FBgn00524791.39                       4843 // ubiquitin-specific inferred activity // inferred from se
                                                                               Y ---              ---
                                                  6508 // proteolysis and peptidolysis //protease from electronic annotation
144675_at CG2254 CG2254 FBgn00299941.39                         16491 // oxidoreductase activity // inferred from sequence si
                                                                               // ---             ---
                                                  7601 // visual perception Y inferred from electronic annotation
151754_at Talin      CG6831 FBgn00359101.39       ---           ---            N ---              ---
141443_at Oscillin   CG6957 FBgn00317171.39                     4342 // glucosamine-6-phosphate deaminase activity // infer
                                                                               Y amnioserosa      ---
                                                  5996 // monosaccharide metabolism // inferred from electronic annotatio
151744_at CG31314 CG31314 FBgn00513141.39                       4222 // metalloendopeptidase ---
                                                                               N ---               activity // inferred from seque
                                                  6508 // proteolysis and peptidolysis // inferred from electronic annotation
143299_at Pepck      CG17725 FBgn00030671.39                    4613 // phosphoenolpyruvate carboxykinase (GTP) activity /
                                                                               // ---             ---
                                                  6094 // gluconeogenesis N inferred from sequence similarity /// 6094 // g
146427_at Socs36E CG15154 FBgn00411841.39                       ---            N non-traceable author statement /// 46425
                                                  7259 // JAK-STAT cascade // ---                 ---
144156_at Vha13      CG6213 FBgn00267531.39                     8553 // hydrogen-exporting ATPase activity, phosphorylative
                                                                                // ---            ---
                                                  15992 // proton transport N inferred from sequence similarity
152420_at Hel89B     CG4261 FBgn00227871.39                     3676 // // inferred --- electronic annotation /// 6357 regul
                                                                               N from             ---
                                                  6281 // DNA repair nucleic acid binding // inferred from electronic//annota
151554_at unspecifiedunspecifiedFBgn00390261.39   ---           ---            N ---              ---
141747_at CG9053 CG9053 FBgn00306061.39                         5102 // protein binding // inferred from electronic annotatio
                                                                               N ---              ---
                                                  6886 // intracellular receptortransport// inferred from electronic annotatio
153041_at Vha55      CG17369 FBgn00056711.38      ---           ---            N ---              ---
In situ in Dl In situ in                                   Log2        Log2        Log2
   loss-of- lmd loss-of-                       RNAi      (Average (dChip          (RMA                   q-value
  function       function mesodermally phenotype           Fold        Fold        Fold    Combined        from
  embryos       embryos       enriched?           ?      Change) Change) Change)             q-value      dChip
---           ---                  Y             ---       3.57        3.51        3.64     0.00001 0.00104
---           ---                 ---            ---       3.33        2.38        4.28     0.00001 0.00104
---           ---                  Y             ---       3.33        3.55        3.10     0.00001 0.00104
---           ---                  Y             ---       3.22        3.30        3.14     0.00001 0.00104
---           ---                  Y             ---       3.08        2.72        3.44     0.00001 0.00104
---           ---                  Y             ---       2.88        2.23        3.54     0.00001 0.00104
---           ---                 ---            ---       2.60        2.55        2.65     0.00001 0.00104
---           ---                  Y             ---       2.59        0.00        2.59     0.00649 1.00000
---           ---                 ---            ---       2.42        2.51        2.33     0.00001 0.00104
              lmd there's no are no ventral cells
                                   Y
 Dl only VM remains, there expression at all. N            2.40        2.26        2.54     0.00001 0.00104
              ---                  Y
DlX expansion of SM clusters, VM like in UAS RAS  Y        2.34        2.10        2.59     0.00001 0.00104
---           ---                 ---            ---       2.29        0.00        2.29     0.00649 1.00000
              lmd no effect , there are 7-9 cells per cluster
                                   Y             ---       2.28        2.18        2.39     0.00001 0.00104
early st 11 the ventral bands don't seem to change in any of the genotypes looked (Ras, Dl, lmd, HH, Top) late st 11 Ras and D
---           ---                  Y             ---       2.23        2.26        2.21     0.00001 0.00104
---           ---                  Y             N         2.23        2.20        2.26     0.00001 0.00104
---           ---                 ---            ---       2.16        2.19        2.14     0.00001 0.00104
---           ---                 ---            ---       2.15        2.19        2.10     0.00001 0.00104
---           ---                  Y             ---       2.09        2.15        2.02     0.00001 0.00104
---           ---                  Y             ---       2.06        1.90        2.23     0.00001 0.00104
---           ---                  Y             ---       2.04        1.80        2.28     0.00001 0.00104
---           ---                  Y             ---       2.02        1.51        2.53     0.00001 0.00104
---           ---                 ---            ---       1.96        1.88        2.04     0.00001 0.00104
              ---
Ras and Dl clear clusters in SM.   Y             N         1.94        2.03        1.84     0.00001 0.00104
               lmd like
 Dl lots of clusters wt            Y             ---       1.93        1.72        2.14     0.00001 0.00104
---           ---                 ---            ---       1.87        1.34        2.39     0.00001 0.00104
---           ---                 ---            ---       1.87        1.85        1.88     0.00001 0.00104
                PNS expanded latereduction are some clusters present although instaining is weak. 0.00104 less expression tha
                                                 expression it's hard to tell because general there seems to be
Dl early st11 lmd not affected, aY 11 there in ---         1.85        1.81        1.89     0.00001
               lmd and reduced although there and still some cells, founders I suppose. 0.00001 0.00104
                                   Y               are     1.75         Ras.
 Dl dorsal, lateral very ventral clusters, bigger--- stronger than in 1.16         2.34
---           ---                 ---            ---       1.74        1.66        1.82     0.00001 0.00104
               Lmd there are in lateral and ventral SM, in lateralSM clear.
                                   Y             ---       1.72         and        1.63
 Dl clusters with expression a couple of cells/segment VM not very1.81 more ventral SM      0.00001 0.00104
              ---                  Y             N         even
Dl is different from Ras because there are big clusters 1.67 in the1.89            1.44
                                                                        cardiac region.     0.00001 0.00104
              ---
 Dl st 10 ventral somatic bands Y  (fainter?) andN         1.66        1.66        1.67
                                                   same at st 11, cardiac primordia expanded0.00001 0.00104
---           ---                  Y             ---       1.66        1.21        2.12     0.00001 0.00104
              lmd looks like remain, SM mostlyremainthere are very faint cells remaining difficult to locate.
 Dl, mostly gone,hemocytesthe Y                  N         1.65        1.57        1.74
                                   same cells that gone, in ras remain here, some VM. 0.00001 0.00104
              Lmd st 11 clear dorsal somatic clusters and left, VM1.55
                                   Y              Y        1.65         present st 1.75 almost gone (some faint st 13 there are st
                                                                                   13 SM 0.00001 0.00104
DLX st 10 band of VM SM clearly reduced almost nothingbigger ventral somatic clusters, st 11 strong clusterscells remain) a litl
---           ---                 ---            ---       1.60        0.86        2.34     0.00001 0.00104
               wt dependent remains, SM mostly difficult to
                                   Y             N
 Dl st 10 VMlmdst 11-12 VMat st 12-13 at st 11 is gone.1.58 asses0.83              2.33     0.00001 0.00104
                                                                        because ther's very litle expression in wt.
              lmd most of faint somatic clusters remain 1.56
                                   Y             ---        for some ventral (F) 1.79
                                                                       1.34                  isolated 0.00104
Dl VM remains and very the expression is gone except(lateral or ventral?) and lateral 0.00001 cells (are they PNS? I don't see
---           ---                  Y             ---       1.56        1.29        1.83     0.00001 0.00104
               Lmd remains.        Y
 Dl only some VM there's no expression left Y              1.52        1.52        1.51     0.00001 0.00104
---           ---                  Y             ---       1.49        1.14        1.84     0.00001 0.00104
---           ---                 ---            ---       1.48        0.79        2.17     0.00001 0.00104
---           ---                  Y            ---         1.45       1.31       1.60       0.00001 0.00104
---           ---                  Y            ---         1.42       0.92       1.91       0.00001 0.00104
---           ---                  Y            ---         1.41       0.00       1.41       0.00932 1.00000
---           ---                 ---           ---         1.39       0.94       1.84       0.00002 0.00104
---           ---                  Y            ---         1.38       1.06       1.69       0.00001 0.00104
---           ---                  Y            ---         1.37       1.11       1.63       0.00001 0.00104
---           ---                 ---           ---         1.37       1.29       1.45       0.00001 0.00104
---           ---                  Y            ---         1.36       0.92       1.80       0.00001 0.00104
---           ---                  Y            ---         1.35       1.29       1.42       0.00001 0.00104
---           ---                  Y            ---         1.35       0.39       2.31       0.00006 0.00604
---           ---                  Y            ---         1.34       1.37       1.30       0.00001 0.00104
---           ---                 ---           ---         1.33       0.67       1.99       0.00001 0.00104
               Lmd clearly reduced in mesoderm.
                                   Y            ---
Ras and Dl there's still expressionfrom mesoderm although there's still expression both0.00001and0.00104in what looks like me
                                                            1.32       1.32       1.31        lateral     ventral
               Lmd gone from SM, VM remains.
                                   Y            ---          and       0.75       1.87
 Dl several clusters at different positions, dorsal, lateral1.31 ventral, VM remains.        0.00002 0.00180
---           ---                  Y            ---         1.31       1.40       1.22       0.00001 0.00104
---           ---                  Y            ---         1.29       0.66       1.93       0.00001 0.00104
               lmd st 12 and ventral SM gone---
                                   Y              very faint1.28 lateral cells that don't go 0.00001 0.00104
                                                              a few    1.00       1.55       away, they could ones.
Dl late st 11 earlylateral some clusters remain except for expression though, most prominently the ventral be PNS or because we
---           ---                  Y            ---         1.24       1.37       1.11       0.00001 0.00104
              lmdTT40 (1) st 11 evreything gone, st 13 somealso remain close to the midline on top of CNS, st 13-14 same as in
 DLX st 11 SM gone, some VMY                     Y          cells      1.27       1.20
                                    remains, some ventral 1.23 faint visceral remains.       0.00001 0.00104
---           ---                  Y            ---         1.22       1.15       1.28       0.00001 0.00104
---           ---                 ---           ---         1.21       1.11       1.30       0.00001 0.00104
---           ---                 ---           ---         1.20       1.02       1.37       0.00001 0.00104
---           ---                  Y            ---         1.20       0.50       1.90       0.00002 0.00145
---           ---                  N            ---         1.19       1.32       1.07       0.00001 0.00104
---           ---                 ---           ---         1.19       1.17       1.21       0.00001 0.00104
---           ---                 ---           ---         1.18       1.27       1.08       0.00001 0.00104
---           ---                  Y            ---         1.15       1.04       1.27       0.00001 0.00104
---           ---                 ---           ---         1.15       1.17       1.14       0.00001 0.00104
---           ---                 ---           ---         1.15       0.79       1.51       0.00001 0.00104
---           ---                 ---           ---         1.14       1.19       1.09       0.00002 0.00104
               all SM gone VM remains.
Ras gone Dl lmd gone               Y            ---         1.13       1.12       1.14       0.00001 0.00104
              lmd don't see an effect.
                                   the          ---         1.12       1.07       1.17       expression.
 Dl clusters in the ventral cells, Y expression pattern is expanded probably from CNS 0.00001 0.00104
              lmd still present, maybe myoblasts
                                   Y
Dl a lot of expression remains in the weaker. N             1.11       1.08       1.14       0.00001 0.00104
---           ---                 ---           ---         1.11       1.06       1.16       0.00001 0.00104
---           ---                 ---           ---         1.11       1.07       1.15       0.00001 0.00104
---           ---                  Y            ---         1.11       1.24       0.97       0.00002 0.00104
---           ---                  N            ---         1.10       0.85       1.35       0.00001 0.00104
---           ---                 ---           ---         1.09       0.15       2.04       0.00086 0.10330
               Lmd, like wt,       Y            ---         1.08
Dl, general expression. you can see the SM pattern although is 1.19    faint.     0.97       0.00001 0.00104
               lmd gone althoughY   there are some           cells     0.95       1.20       0.00001 0.00104
Dl gone clear case, only some VM remains. --- ventral1.07 remaning and lateral-ventral cells also, that could be fat body or so
               lmd VM gone, many of what. ---
                                   Y                        1.07
Dl too many clusters to know what isthe ventral cells are gone but 1.09            ventral cells remain in more lateral position, are th
                                                                       a couple of1.06       0.00001 0.00104
---           ---                 ---           ---         1.07       1.05       1.09       0.00001 0.00104
---           ---                 ---           ---         1.07       0.64       1.50       0.00005 0.00469
---           ---                 ---           ---         1.07       0.95       1.19       0.00001 0.00104
---           ---                  N            ---         1.06       0.56       1.56       0.00004 0.00388
---           ---                 ---           ---         1.05       1.19       0.92       0.00001 0.00104
---           ---                 ---           ---         1.05       1.11       0.99       0.00001 0.00104
---           ---                  Y            ---         1.05       1.16       0.94       0.00001 0.00104
---           ---                  Y            ---         1.04       1.12       0.95       0.00001 0.00104
---           ---                 ---           ---         1.04       1.12       0.95       0.00001 0.00104
---           ---                 ---           ---         1.03       0.77       1.29       0.00001 0.00104
---           ---                  Y            ---         1.03       0.92       1.13       0.00001 0.00104
---           ---                   ---            ---       1.00       1.03       0.96       0.00002 0.00104
              Lmd                    Y             faint     1.00       0.77
Dl mostly gone. gone, some embryos have --- expression in ventral cells. 1.22                 0.00001 0.00104
---           ---                   ---            ---       0.98       1.01       0.96       0.00001 0.00104
---           ---                    Y             ---       0.98       0.82       1.15       0.00001 0.00104
---           ---                   ---            ---       0.97       0.89       1.05       0.00001 0.00104
               maybe the nothing.    Y             ---       is very
Dl late st 11 lmd there's ventral clusters are stained but 0.97 faint.  0.89       1.04       0.00001 0.00104
---           ---                    Y             ---       0.94       0.96       0.92       0.00001 0.00104
---           ---                    Y             ---       0.94       0.91       0.98       0.00001 0.00104
---           ---                    Y             ---       0.94       0.97       0.91       0.00001 0.00104
                 gone including ventral cells. ---
                                     Y
Dl everythinglmd gone except for yolk expression.            0.94       0.81       1.07       0.00001 0.00104
                goes away, Dl goes away cells remain, maybe from 0.51
                                     Y             N         0.94       cardiac remain, st 13 most SM gone at
                                                                                   1.37       can be seen also
UASRas SM lmd goes away some few and some VM and maybe the amnioserosathey 0.00005 0.00469 st 12-14.
                 of no phenotype.
Dl expansionlmdPNS groups. Y                       ---       0.92       0.58       1.27       0.00004 0.00388
---           ---                    Y             ---       0.92       0.97       0.87       0.00001 0.00104
---           ---                    Y             ---       0.92       0.93       0.91       0.00001 0.00104
---           ---                    Y             ---       0.92       0.90       0.94       0.00001 0.00104
                 gone, SG gone, Y and VM gone, border of amnioserosa remain, as some SG and some cells in CNS. st 13 b
                                     SM            N         0.91       CNS        0.78       0.00001 0.00104
DlX st 11 SMlmdTT40 (1) st 11 VM remains st 13-14 expansion of 1.04 and there arewell asclusters in lateral that could PNS (m
---           ---                    Y             ---       0.90       0.98       0.82       0.00002 0.00104
---           ---                   ---            ---       0.90       0.84       0.96       0.00001 0.00104
---           ---                    Y             ---       0.90       1.04       0.75       0.00001 0.00104
---           ---                    Y             ---       0.90       0.58       1.21       0.00001 0.00104
---           ---                    Y             ---       0.89       0.89       0.90       0.00040 0.00104
---           ---                    Y             ---       0.89       0.65       1.14       0.00001 0.00104
---           ---                   ---            ---       0.89       0.77       1.01       0.00001 0.00104
---           ---                   ---            ---       0.89       0.81       0.97       0.00001 0.00104
---           ---                   ---            ---       0.88       0.26       1.51       0.00035 0.03815
---           ---                    Y             ---       0.88       0.57       1.18       0.00005 0.00469
               lmd the staining the general weaker but the cardiac is present and theI lateral SM is difficult to say if present becau
                                     in            ---
Ras I don't see expression in is Y clusters that form the0.87           0.94       0.81       0.00001 0.00104
                                                             cardiac primordia, although see the clustered cells!, there are some bi
---           ---                   ---            ---       0.87       0.78       0.97       0.00001 0.00104
                string of cells (cardiac?) remain,--- clear0.87 remains or is it0.88
 Dl dorsaly almd dorsal string ofY                  some      cluster   0.85          could 0.00002 0.00104
                                      cells no clusters, lateral SM more internally,PNS? be from lateral SM or PNS, single cells ve
---           ---                   ---            ---       0.86       0.00       0.86       0.02041 1.00000
---           ---                    Y             ---       0.86       0.55       1.16       0.00002 0.00180
              11 evident PNS clusters, SM gone something SM but cells from ventro-lateral 0.00104 SM gone.
                                     Y              still    some        faint     1.13       13-14 PNS clusters,
 DLX late st lmdTT40 late st11 most there's--- but still0.85 incells0.58 faint clusters, st 0.00001 SM, st 13-14 SM gone, present
---           ---                    Y             ---       0.85       0.68       1.02       0.00003 0.00104
---           ---                    Y             ---       0.85       0.92       0.79       0.00002 0.00104
---           ---                    Y             ---       0.85       0.89       0.81       0.00004 0.00104
---           ---                    Y             ---       0.85       0.71       0.98       0.00001 0.00104
---           ---                   ---            ---       0.85       0.69       1.00       0.00001 0.00104
              Lmd, gone from remains, CNS expamded.
                                     Y
 DL gone from SM, a litle VMSM and VM, CNS remains.---       0.84       0.95       0.73       0.00002 0.00104
---           ---                    Y             ---       0.84       0.86       0.81       0.00001 0.00104
---           ---                   ---            ---       0.83       0.89       0.78       0.00002 0.00104
---           ---                   ---            ---       0.83       0.62       1.04       0.00001 0.00104
---           ---                    Y             ---       0.82       0.93       0.72       0.00011 0.00104
---           ---                    Y             ---       0.82       0.83       0.82       0.00002 0.00104
---           ---                    Y             ---       0.82       0.88       0.75       0.00001 0.00104
               mostly same as at in VM 11 SM (although the wt picture seems strongerIbut it is probably due to staining differe
                                     Y             N         0.82       0.78
 DL st 11SM lmd thegone but wt later stand the remaining cells seem to have 0.85                don't see anything
                                                                                    clustered,0.00013 0.00104 outside the clusters
---           ---                    Y             ---       0.81       0.91       0.72       0.00001 0.00104
---           ---                   N              ---       0.81       0.71       0.92       0.00001 0.00104
---           ---                    Y             ---       0.81       0.76       0.86       0.00001 0.00104
---           ---                    Y             ---       0.81       0.83       0.79       0.00004 0.00104
---           ---                    Y             ---       0.81       0.17       1.45       0.00125 0.10330
---           ---                    Y             ---       0.80       0.80       0.00       0.00820 0.00104
---           ---                   N              ---       0.80       0.00       0.80       0.14901 1.00000
---         ---               ---           ---       0.79       0.78       0.79       0.00002 0.00104
---         ---                N            ---       0.79       0.65       0.93       0.00002 0.00104
---         ---                Y            ---       0.79       0.87       0.70       0.00023 0.00104
            lmd cardiac present, PNS external present, lateral and ventral more internal cells still present, probably founders.
Dl many clusters.              Y            ---       0.78       0.77       0.79       0.00023 0.00104
---         ---                Y            ---       0.78       0.78       0.00       0.05043 0.00880
---         ---               ---           ---       0.77       0.71       0.84       0.00001 0.00104
            Lmd gone from      Y             N
Dl gone, some VM remains. ventral and lateral too.    0.77       0.59       0.96       0.00001 0.00104
---         ---               ---           ---       0.77       0.93       0.61       0.00003 0.00104
---         ---                Y            ---       0.77       0.78       0.75       0.00001 0.00104
---         ---               ---           ---       0.77       0.61       0.92       0.00014 0.01391
---         ---               ---           ---       0.77       0.75       0.78       0.00001 0.00104
---         ---               ---           ---       0.76       0.76       0.00       0.03688 0.00604
---         ---                N            ---       0.75       0.70       0.80       0.00017 0.00469
---         ---               ---           ---       0.75       0.75       0.00       0.07893 0.01522
---         ---               ---           ---       0.75       0.65       0.84       0.00001 0.00104
---         ---               ---           ---       0.73       0.63       0.84       0.00001 0.00104
---         ---                Y            ---       0.73       0.82       0.65       0.00003 0.00104
---         ---               ---           ---       0.73       0.60       0.87       0.00001 0.00104
---         ---               ---           ---       0.73       0.79       0.67       0.00008 0.00104
---         ---               ---           ---       0.73       0.72       0.74       0.00001 0.00104
---         ---                Y            ---       0.73       0.70       0.75       0.00002 0.00104
---         ---                Y            ---       0.72       0.89       0.56       0.00023 0.00104
---         ---                Y            ---       0.71       0.84       0.59       0.00006 0.00104
---         ---               ---           ---       0.71       0.44       0.99       0.00035 0.03815
---         ---               ---           ---       0.71       0.71       0.71       0.00002 0.00104
---         ---                Y            ---       0.71       0.34       1.08       0.00020 0.02061
---         ---                Y            ---       0.71       0.85       0.57       0.00015 0.00104
---         ---               ---           ---       0.71       0.66       0.76       0.00001 0.00104
            Lmd but remains in VM.
Dl gone from SM gone           Y             N        0.71       0.82       0.59       0.00082 0.00104
---         ---                Y            ---       0.70       0.76       0.64       0.00023 0.00104
---         ---               ---           ---       0.70       0.71       0.68       0.00002 0.00145
             lmd VM and SM gone,
                               faint.        N        0.70       0.53       0.86
 Dl some group of cells remain Y maybe some faint cells remain in the ventral SM. 0.00002 0.00104
---         ---                Y            ---       0.69       0.55       0.84       0.00001 0.00104
---         ---               ---           ---       0.69       0.69       0.00       0.04282 0.00722
---         ---               ---           ---       0.69       0.79       0.58       0.00040 0.00104
---         ---                Y            ---       0.68       0.63       0.73       0.00003 0.00104
---         ---               ---           ---       0.68       0.61       0.76       0.00001 0.00104
---         ---                Y            ---       0.68       0.70       0.66       0.00008 0.00104
---         ---                Y            ---       0.68       0.26       1.09       0.00041 0.04602
---         ---                Y            ---       0.68       0.63       0.72       0.00001 0.00104
---         ---                Y            ---       0.67       0.66       0.69       0.00001 0.00104
---         ---                Y            ---       0.67       0.67       0.67       0.00002 0.00104
---         ---                Y            ---       0.67       0.72       0.62       0.00015 0.00104
---         ---               ---           ---       0.67       0.79       0.55       0.00029 0.00104
---         ---               ---           ---       0.66       0.54       0.79       0.00001 0.00104
---         ---                Y            ---       0.66       0.34       0.99       0.00035 0.01391
---         ---                Y            ---       0.66       0.79       0.54       0.00015 0.00104
              some dorsal cluster but look ectodermal, band
                               Y              as       probably PNS (later at st 13 the0.00003 are much stronger), don't see
                                                                 0.64       CNS         clusters 0.00104
 Dl There arelmd st 11 SM gone, VM remainsY wider 0.66 or more diffuse, 0.68 remains, don't see much in the ectoderm, stm
---         ---               ---           ---       0.66       0.54       0.78       0.00001 0.00104
---         ---                Y            ---       0.66       0.77       0.55       0.00040 0.00104
---         ---                Y            ---       0.66       0.36       0.95       0.00012 0.01205
---         ---               ---           ---       0.66       0.30       1.01       0.00024 0.02584
---          ---                   Y             ---        0.65     0.67      0.63      0.00003 0.00104
---          ---                   Y             ---        0.65     0.66      0.63      0.00003 0.00104
---          ---                  ---            ---        0.64     0.65      0.63      0.00006 0.00104
---          ---                  ---            ---        0.64     0.64      0.00      0.13549 0.03008
---          ---                  ---            ---        0.63     0.81      0.46      0.00011 0.00104
              lmd not affected. Y                N          0.63     0.76      0.50      0.00082 0.00104
Dl both SM and VM very reduced but there are still some cells remaining both laterally and ventrally, SG gone.
---          ---                  ---            ---        0.63     0.61      0.64      0.00029 0.00104
---          ---                   Y             ---        0.63     0.69      0.56      0.00013 0.00104
---          ---                   N             ---        0.62     0.65      0.59      0.00040 0.00104
---          ---                   Y             ---        0.62     0.51      0.73      0.00015 0.00880
---          ---                   Y             ---        0.62     0.72      0.52      0.00024 0.00180
---          ---                   Y             ---        0.62     0.60      0.64      0.00002 0.00104
---          ---                  ---            ---        0.62     0.58      0.66      0.00011 0.00145
---          ---                  ---            ---        0.62     0.76      0.48      0.00029 0.00104
---          ---                  ---            ---        0.62     0.54      0.70      0.00002 0.00145
---          ---                   Y             ---        0.61     0.57      0.66      0.00013 0.00104
---          ---                   Y             ---        0.61     0.71      0.51      0.00039 0.00145
---          ---                  ---            ---        0.61     0.78      0.43      0.00006 0.00104
---          ---                  ---            ---        0.61     0.47      0.75      0.00002 0.00145
---          ---                   Y             ---        0.60     0.00      0.60      0.03595 1.00000
---          ---                   Y             ---        0.60     0.85      0.35      0.00002 0.00104
---          ---                   N             ---        0.60     0.69      0.51      0.00001 0.00104
              lmd at st difficult like wt but at 13 it's gone.
                                   Y             N          st13     still     0.51      0.00023 0.00104
 Ras and Dl like wt it's11 looksto see SM at st 11 so at 0.60 ther's 0.68expression in SM.
             ---
 Dl the clusters disappear.        Y             ---        0.60     0.64      0.56      0.00002 0.00145
---          ---                  ---            ---        0.59     0.59      0.00      0.06529 0.01205
---          ---                   Y             ---        0.59     0.68      0.50      0.00011 0.00104
             and slightly lower levels both at st11 and 13
                                   Y             N          0.59     0.72
Dl most SM lmd, VM gone but some groups of cell remain from both SM and VM.    0.47      0.00018 0.00104
---          ---                  ---            ---        0.59     0.49      0.68      0.00003 0.00291
---          ---                  ---            ---        0.58     0.57      0.59      0.00003 0.00104
             lmd gone
 Dl gone except for some VM. Y                   N          0.58     0.62      0.54      0.00005 0.00180
---          ---                   Y             ---        0.58     0.65      0.51      0.00002 0.00104
---          ---                   Y             ---        0.58     0.68      0.48      0.00023 0.00104
---          ---                  ---            ---        0.58     0.51      0.65      0.00009 0.00180
---          ---                  ---            ---        0.58     0.54      0.61      0.00003 0.00104
---          ---                   Y             ---        0.57     0.67      0.47      0.00006 0.00104
---          ---                   Y             ---        0.57     0.58      0.57      0.00004 0.00145
              lmd now
Ras and Dl gone,gone.the CNSY                    N
                                    becomes more evident.   0.57     0.68      0.46      0.00013 0.00104
---          ---                  ---            ---        0.57     0.48      0.66      0.00261 0.01205
---          ---                   Y             ---        0.57     0.61      0.53      0.00021 0.00180
---          ---                   Y             ---        0.57     0.55      0.58      0.00018 0.00104
---          ---                   Y             ---        0.57     0.69      0.44      0.00040 0.00104
---          ---                  ---            ---        0.57     0.45      0.69      0.00203 0.01522
---          ---                  ---            ---        0.56     0.55      0.58      0.00002 0.00145
---          ---                   Y             ---        0.56     0.59      0.54      0.00131 0.00388
---          ---                   Y             ---        0.56     0.60      0.52      0.00023 0.00104
             Lmd st plus SM clusters.
                                   Y              low       0.56     st 13     0.52      0.00008
 Dl cardiac clusters 11 difficult to see becase N expression in wt 0.60 SM levels lower than wt 0.00145
---          ---                  ---            ---        0.56     0.61      0.51      0.00011 0.00104
---          ---                  ---            ---        0.56     0.56      0.00      0.03688 0.00604
              Lmd much             Y               at       0.56     0.70      0.41      0.00156 0.00104
 Dl st 11 don't seegone. expression althoughN st 13 there's some expression in the clusters.
---          ---                  ---            ---        0.56     0.47      0.65      0.00890 0.01522
---          ---                   Y             ---        0.56     0.68      0.44      0.00029 0.00104
---          ---                  ---            ---        0.56     0.51      0.60      0.00003 0.00291
                Lmd clear lower expression at N
                                     Y
 Dl some cells clustered express the gene. st 13 when 0.56             0.53        0.58    st 11 is   faint to
                                                          wt expression is stronger but at 0.00011 too0.00104tell
---            ---                  ---         ---       0.55         0.50        0.61    0.00001 0.00104
               Lmd like wt.          Y          ---
Dl big clusters some of them are from PNS, VM like wt.    0.55         0.50        0.61    0.00006 0.00104
---            ---                  ---         ---       0.55         0.23        0.87    0.00992 0.03815
---            ---                  ---         ---       0.55         0.62        0.47    0.00003 0.00104
---            ---                   Y          ---       0.55         0.60        0.49    0.00156 0.00469
---            ---                   Y          ---       0.55         0.63        0.47    0.00015 0.00104
---            ---                  ---         ---       0.54         0.62        0.46    0.00018 0.00104
---            ---                  ---         ---       0.54         0.64        0.45    0.00015 0.00104
---            ---                  ---         ---       0.54         0.54        0.00    0.05043 0.00880
---            ---                   Y          ---       0.54         0.62        0.45    0.00029 0.00104
---            ---                  ---         ---       0.54         0.63        0.45    0.00316 0.00469
---            ---                   Y          ---       0.54         0.72        0.35    0.00170 0.00104
---            ---                   Y          ---       0.54         0.52        0.55    0.00031 0.00145
---            ---                   Y          ---       0.53         0.47        0.60    0.00073 0.00291
---            ---                  ---         ---       0.53         0.00        0.53    0.07430 1.00000
---            ---                  ---         ---       0.53         0.53        0.00    0.10063 0.02061
               ---                   Y          N         0.53         0.65
Ras and Dl there's expression in mesoderm (besides from many other tissues).       0.41    0.00739 0.00604
---            ---                  ---         ---       0.53         0.45        0.61    0.00111 0.00604
---            ---                   Y          ---       0.53         0.53        0.53    0.00031 0.00145
---            ---                  ---         ---       0.53         0.55        0.51    0.00001 0.00104
               Lmd goes away. Y                 N         0.53         0.71        0.35
Dl st 11 some fuzzy faint expression remains, st 13 there are some strong clusters . 0.00170 0.00104
---            ---                   Y          ---       0.53         0.33        0.73    0.00408 0.02584
---            ---                  ---         ---       0.53         0.64        0.41    0.00008 0.00104
                Lmd gone
 Dl some faint expression remains.   Y          N         0.53         0.15        0.91    0.00086 0.10330
---            ---                   Y          ---       0.52         0.40        0.64    0.00015 0.01522
---            ---                   Y          ---       0.52         0.62        0.43    0.00031 0.00145
---            ---                  ---         ---       0.52         0.49        0.55    0.00037 0.00291
---            ---                  ---         ---       0.52         0.52        0.00    0.05919 0.01069
---            ---                   Y          ---       0.52         0.52        0.00    0.07336 0.01391
---            ---                   Y          ---       0.51         0.56        0.47    0.00007 0.00388
---            ---                  ---         ---       0.51         0.53        0.50    0.00195 0.00604
---            ---                  ---         ---       0.51         0.48        0.55    0.00002 0.00104
---            ---                  ---         ---       0.51         0.51        0.00    0.07893 0.01522
---            ---                  ---         ---       0.51         0.63        0.39    0.00027 0.00388
                Lmd don't see in the clusters. N
                                     Y
Dl there's strong expressionan effect .                   0.51         0.62        0.41    0.00316 0.00469
---            ---                   Y          ---       0.51         0.65        0.37    0.00134 0.00180
---            ---                   Y          ---       0.51         0.63        0.38    0.00023 0.00104
---            ---                   Y          ---       0.51         0.49        0.53    0.00073 0.00291
---            ---                   Y          ---       0.51         0.50        0.51    0.00013 0.00469
---            ---                  ---         ---       0.51         0.56        0.46    0.00065 0.00180
---            ---                  ---         ---       0.51         0.52        0.49    0.00256 0.01531
                some clusters. Y                N         0.51         0.52        0.50
 Dl there are Lmd at st 11 difficult to say because is very faint, at st 13 looks reduced. 0.00089 0.00469
---            ---                   Y          ---       0.51         0.66        0.35    0.00082 0.00104
---            ---                  ---         ---       0.51         0.58        0.43    0.00024 0.00180
---            ---                   Y          ---       0.50         0.55        0.46    0.00082 0.00104
---            ---                  N           ---       0.50         0.70        0.30    0.00940 0.00722
---            ---                   Y          ---       0.50         0.71        0.29    0.00156 0.00104
---            ---                   Y          ---       0.50         0.53        0.47    0.00011 0.00104
---            ---                  ---         ---       0.50         0.62        0.37    0.00085 0.00722
---            ---                  ---         ---       0.50         0.48        0.51    0.00234 0.01069
               lmd looks like to Y               Y        0.49
 Dl a lot of clusters, difficultwt say what's mesoderm and what's PNS. 0.41        0.58    0.00121 0.02061
---          ---                   Y              ---        0.49    0.55     0.44      0.00075 0.00388
---          ---                   Y              ---        0.49    0.59     0.40      0.00018 0.00104
---          ---                   Y              ---        0.49    0.68     0.30      0.00023 0.00104
---          ---                   Y              ---        0.49    0.54     0.44      0.00131 0.00388
---          ---                  ---             ---        0.49    0.62     0.36      0.00395 0.00604
---          ---                   Y              ---        0.49    0.47     0.51      0.00037 0.00291
             Lmd don't see an the clusters. N
                                   Y
Dl there's strong expression ineffect .                      0.49    0.26     0.72      0.00026 0.02819
---          ---                  ---             ---        0.49    0.63     0.35      0.00895 0.01531
---          ---                   Y              ---        0.49    0.39     0.59      0.00078 0.00880
---          ---                  ---             ---        0.49    0.60     0.37      0.00040 0.00104
---          ---                   Y              ---        0.49    0.61     0.36      0.00038 0.01531
---          ---                   Y              ---        0.49    0.54     0.43      0.00038 0.01522
---          ---                   Y              ---        0.49    0.60     0.38      0.00156 0.00104
---          ---                   Y              ---        0.48    0.58     0.39      0.00156 0.00104
              lmd clusters         Y              N
DL expression in independent or is PNS expression 0.48               0.49     0.48      0.00135 0.01205
             Ras and Lmd           Y              ---        0.48    0.59     0.37      0.00023
Dl expression in clusters. difficult to say because the wt expression in mesod is already very faint. 0.00104
---          ---                   Y              ---        0.48    0.44     0.52      0.00006 0.00388
              lmd difficult there'sitstill some staining left0.48
                                                  N           longer the      0.53      0.00066        in wt. It
Dl mostly gone although to say Y was repeated andremaining but 0.43expression is very faint even0.00722 is like RpI135.
---          ---                   Y              ---        0.48    0.59     0.37      0.00015 0.00104
---          ---                  ---             ---        0.48    0.48     0.48      0.00015 0.00145
---          ---                   Y              ---        0.48    0.27     0.69      0.00035 0.03815
---          ---                  ---             ---        0.48    0.48     0.00      0.04282 0.00722
---          ---                  ---             ---        0.48    0.45     0.50      0.00011 0.00722
---          ---                   Y              ---        0.48    0.52     0.43      0.00864 0.00722
---          ---                   Y              ---        0.48    0.68     0.27      0.00176 0.00104
---          ---                  ---             ---        0.48    0.10     0.85      0.00543 0.15908
---          ---                  ---             ---        0.47    0.60     0.35      0.00501 0.00388
---          ---                  ---             ---        0.47    0.53     0.42      0.00134 0.00180
---          ---                  ---             ---        0.47    0.57     0.38      0.00207 0.00291
---          ---                  ---             ---        0.47    0.60     0.34      0.00031 0.00145
---          ---                  ---             ---        0.47    0.52     0.42      0.01115 0.00880
---          ---                  ---             ---        0.47    0.49     0.45      0.00029 0.00104
---          ---                  ---             ---        0.47    0.59     0.35      0.00023 0.00104
q-value
  from
 RMA
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00121
0.00104
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00104
0.00080
0.00080
0.00080
0.00080
0.00080
0.00104
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00121
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00121
0.00080
0.00080
0.00080
0.03401
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00080
0.00104
0.00300
0.00080
0.00080
0.00222
0.00141
0.00300
0.00080
0.00080
0.00104
0.00080
0.00121
0.00080
0.00849
0.00104
0.00080
0.00967
0.00080
0.00080
0.00080
0.00300
0.00121
1.00000
0.03401
0.00104
0.00104
0.01822
0.01822
1.00000
0.00080
0.00080
0.00222
0.00080
0.00080
0.00080
1.00000
0.00300
1.00000
0.00080
0.00080
0.00222
0.00080
0.00585
0.00080
0.00121
0.01822
0.00410
0.00080
0.00104
0.00080
0.01130
0.00080
0.07525
0.01822
0.00080
0.00104
0.00080
1.00000
0.03401
0.00222
0.00080
0.00585
0.00080
0.00080
0.00080
0.00141
0.01130
0.02360
0.00080
0.00222
0.01130
0.00222
0.00080
0.03401
0.00080
0.00080
0.00222
0.00222
0.00410
1.00000
0.00849
0.07525
0.02360
0.00967
0.03401
0.00141
0.01130
0.00141
0.00585
0.02360
0.00080
0.00967
0.02360
0.00410
0.00080
0.00585
0.00141
0.00080
0.01822
0.00121
1.00000
0.00849
0.01413
0.00080
0.00222
0.00222
0.00121
0.01822
0.00410
0.00222
0.00410
0.00222
0.00967
0.02360
0.00967
0.01413
0.03401
0.01413
0.00080
0.03401
0.01822
0.00410
0.00849
1.00000
0.15333
0.07525
0.02360
0.00080
0.00849
0.00080
0.00410
0.03401
0.00222
0.03401
0.01130
0.01413
0.01130
1.00000
0.02360
0.07525
0.16878
0.01822
0.02360
0.01413
1.00000
0.15333
0.01822
0.01822
0.00080
0.16878
0.01822
0.00585
0.00080
0.00080
0.01822
0.01130
1.00000
1.00000
0.00141
0.03401
0.00121
1.00000
0.00585
0.07525
0.07525
0.01822
0.02360
0.00222
0.03401
0.01822
0.01822
0.07525
0.01130
0.07525
0.16878
0.15333
0.00849
0.01130
0.02360
0.00585
0.01822
0.01413
0.01822
0.03401
0.07525
0.01130
0.00080
0.07525
0.00849
0.03401
0.00222
0.00222
0.15333
0.15333
0.01130
0.01822
0.00121
0.00849
0.01130
0.00849
0.00080
1.00000
0.00121
0.15333
0.17580
0.00410
0.15333
0.07525
0.07525
0.01822
0.16878
0.02360
0.01822
 FC predictions: 33 genes, 64% true    FCM predictions: 48 genes, 28%
             positives                         true positives
Gene                                  Gene
Symbol FC call                        Symbol FCM call
CG10433 not FC                        CG1915 notFCM(FC+FCMbylit)
CG12071 not FC                        CG11059 notFCM(FC+FCM)
CG14307 not FC                        CG14548 notFCM(FC+FCM)
CG17323 not FC                        CG8503 notFCM(FC+FCM)
CG1743 not FC                         CG10947 not FCM
CG4821 not FC                         CG1124 not FCM
CG6024 not FC                         CG12758 not FCM
CG6980 not FC                         CG16749 not FCM
CG7780 not FC                         CG16758 not FCM
CG14989 not done                      CG17800 not FCM
CG10108 FC(validatedbyArteroandlab)   CG1803 not FCM
CG12908 FC(validatedbyArteroandlab)   CG31038 not FCM
CG10388 FC(validatedbyArtero)         CG4123 not FCM
CG11280 FC(validatedbyArtero)         CG4136 not FCM
CG3258 FC(validatedbyArtero)          CG4276 not FCM
CG31317 FC(lit)                       CG6339 not FCM
CG10275 FC(lab)                       CG7088 not FCM
CG1225 FC(lab)                        CG8342 not FCM
CG2083 FC(lab)                        CG8733 not FCM
CG4722 FC(lab)                        CG9119 not FCM
CG6531 FC(lab)                        CG9336 not FCM
CG7223 FC(lab)                        CG9889 not FCM
CG8147 FC(lab)                        CG2679 FCM(validbyArtero)
CG9520 FC(lab)                        CG5441 FCM(validbyArtero)
CG14207 FC(lab)                       CG7449 FCM(LIT)
CG17492 FC(lab)                       CG13348 FCM(lab)
CG17348 NA                            CG1363 FCM(lab)
CG31349 NA                            CG2718 FCM(lab)
CG10131 not done                      CG6050 FCM(lab)
CG1394 not done                       CG9674 FCM(lab)
CG4128 not done                       CG4426 FCM
CG7157 not done                       CG32031 FC+FCM(lab)
CG8588 not done                       CG10842 not done
                                      CG16791 not done
                                      CG17210 not done
                                      CG1944 not done
                                      CG2668 not done
                                      CG3006 not done
                                      CG33045 not done
                                      CG3460 not done
                                      CG4889 not done
                                      CG7212 not done
                                      CG7761 not done
                                      CG8329 not done
                                      CG8343 not done
                                      CG8910 not done
                                      CG9085 not done
CG9279   not done

								
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