Fig. 1 Histogram of Simpson's diversity index (probability of two individuals
sharing an identical haplotype) among population level 1 (pop1, 1km apart).
Fig. 2 The world-wide distribution of the average genetic diversity within
populations at population level 1 (pop1, 1km apart). Each dot represents
one population at pop1 level. The more yellowish the color is, the high
genetic diversity is.
Fig. 3. Histogram of minor allele frequency at 248584 SNPs among 350
Fig. 4. Histogram of flowering time under four conditions among the core
Fig. 5. Seasonal and geographical responses of flowering time under four
conditions among the core 360 accessions.
Fig. 6. QQ plot to compare the false positive rates (lambda) among different
Fig. 7. Genome-wide distribution of p-values using mixed model in Spain Spring.
Spain Spring Sweden Spring
Spain Summer Sweden Summer
Fig. 8. Genome-wide distribution of p-values using polygenic model under four conditions.
Fig. 9. Pairwise LD within the 52.1 kb region on Chromosome 5 (position
from 3163524 to 3215636). Blue dots represent candidate SNPs identified
in Spring Spain condition. The SNPs within FLC were shown as the blue
Fig. 10. Pairwise LD within the 251 kb region on Chromosome 5 (including
the region from 3163524 to 3215636 as shown in Fig. 9).