Fig. 1 Histogram of Simpson's diversity index by sif19147

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									Fig. 1 Histogram of Simpson's diversity index (probability of two individuals
sharing an identical haplotype) among population level 1 (pop1, 1km apart).




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Fig. 2 The world-wide distribution of the average genetic diversity within
populations at population level 1 (pop1, 1km apart). Each dot represents
one population at pop1 level. The more yellowish the color is, the high
genetic diversity is.




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Fig. 3. Histogram of minor allele frequency at 248584 SNPs among 350
accessions.




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Fig. 4. Histogram of flowering time under four conditions among the core
360 accessions.




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Fig. 5. Seasonal and geographical responses of flowering time under four
conditions among the core 360 accessions.




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Fig. 6. QQ plot to compare the false positive rates (lambda) among different
models.




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Fig. 7. Genome-wide distribution of p-values using mixed model in Spain Spring.




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              Spain Spring                                       Sweden Spring




              Spain Summer                                      Sweden Summer




Fig. 8. Genome-wide distribution of p-values using polygenic model under four conditions.



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                                  FLC




Fig. 9. Pairwise LD within the 52.1 kb region on Chromosome 5 (position
from 3163524 to 3215636). Blue dots represent candidate SNPs identified
in Spring Spain condition. The SNPs within FLC were shown as the blue
line.




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Fig. 10. Pairwise LD within the 251 kb region on Chromosome 5 (including
the region from 3163524 to 3215636 as shown in Fig. 9).




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