Table 8. Motif list, Respiratory distress, strict parameters by rma97348

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									Table 8. Motif list, Respiratory distress, strict parameters
                  I                   2    3       4
Seed contig1237_54_59 - 132 members
             Contig1237               54   59      KKLEEN
             Contig1204               49   53       DKLEE
              Contig857               51   56      KKLEQN
             Contig1061               54   58       KLEDN
             Contig1185               53   58      KKLEDN
             Contig1268               50   55      KKLEEN
             Contig1293               51   56      KKLEKN
             Contig1407               54   59      KKLEKN
             Contig1192               54   59      KKLENN
             Contig1362               53   58      KQLEDN
             Contig1197               51   56      KQLEDN
             Contig1228               53   58      EKLEDN
             Contig1382               54   59      EKLEDN
             Contig1429               50   55      RKKLDE
             Contig1300               47   52      KEKLEQ
             Contig1400               52   57      KEKLEQ
             Contig1400               59   64      LKKFFQ
             Contig1299               53   58      KEKLEE
             Contig1398               54   58       KLEDN
             Contig1343               49   53       DKLED
             Contig1352               52   56       KLEEN
             Contig1284               54   58       KLEEN
             Contig1172               49   53       DKLEE
             Contig1273               23   27       DKLEE
             Contig1332               49   53       VKLEE
             Contig1118               24   28       DKLEE
             Contig1137               29   33       SKLEE
             Contig1173               43   47       DKLEE
             Contig1334               49   54      KRRLED
             Contig1378               54   59      KKIQDN
             Contig1358               53   58      KKIQDN
             Contig1344               54   59      KKIQDN
             Contig1199               54   58       KKLEE
             Contig1250               47   51       KKKLE
             Contig1305               53   58      KQLEKN
             Contig1377               53   58      RKQLEK
              Contig972               54   59      KQLEKN
             Contig1081               53   58      KKLDKN
             Contig1081               57   61       KNLEE
              Contig970               53   58      KQLENN
             Contig1360               51   56      EKLEKN
             Contig1430               54   59      EKLEKN
             Contig1313               47   52      KKKVQE
             Contig1278               51   56      EKLENN
             Contig1376               53   58      EKLENN
             Contig1210               56   61      EKLENN
             Contig1397               53   58      REKLEN
             Contig1288               54   59      KQLQQN
             Contig1180               54   59      KQLQQN
             Contig1291               55   60      KKQLQE
             Contig1336               53   58      KKQLQE
             Contig1420               51   56      RQQLEE
              Contig988               28   33      KQLDDN
             Contig1304               53   58      KQLDDN
             Contig1169               54   59      KEKLQQ
             Contig1259               56   61      KKLGEN
             Contig1117               53   58      KQLDEN
             Contig1270               27   32      KQLDEN
             Contig1403               52   57      RKQLDE
             Contig1116               53   58      KQLDEN
              Contig998               50   54       DRLEE
             Contig1372               43   47       DRLEE
              Contig962               48   52       DRLEE
             Contig1412               50   54       DRLEE
             Contig1281               50   54       TKLEK
                    Contig953                         24   28    DKLEK
                   Contig1189                         49   53    DKLEK
                   Contig1240                         48   52    VKLEK
                   Contig1065                         47   51    TKLEK
                    Contig863                         25   29    TKLEK
                   Contig1359                         50   54    TKLEK
                   Contig1133                         36   40    KLENN
                   Contig1113                         54   58    VKLEN
                   Contig1198                         54   58    VKLEN
                   Contig1427                         51   56   EKLDEN
                   Contig1144                         51   56   EKLDEN
                   Contig1023                         34   39   KKQLEA
                   Contig1414                         49   53    QLEEN
                   Contig1222                         54   58    KLDEN
                   Contig1418                         54   58    ELEDN
                   Contig1419                         55   59    ELEDN
                   Contig1394                         55   59    ELEDN
                   Contig1217                         55   59    ELEDN
                   Contig1225                         53   57    EKRLE
                   Contig1225                         49   53    KKELE
                   Contig1269                         53   57    EKRLE
                   Contig1287                         62   66    KLKEN
                   Contig1426                         54   59   QKIQDN
                   Contig1115                         54   59   QKIQDN
                    Contig899                         26   31   QKIQDN
                   Contig1230                         54   58    KQLED
                    Contig951                         28   32    KKLDD
                   Contig1353                         51   55    KKLDD
                   Contig1406                         49   53    KKQLE
                   Contig1303                         59   63    EKLEQ
                   Contig1348                         51   55    REKLE
                   Contig1396                         53   58   RQQLEK
                    Contig933                         54   58    KELEQ
                   Contig1277                         50   55   QQLENN
                   Contig1151                         53   58   KERLQQ
                   Contig1108                         24   27     DKLE
                   Contig1366                         27   32   KEKLQN
                   Contig1410                         54   57     DKLE
                   Contig1218                         50   54    DRLEK
                   Contig1242                         54   59   REQLEK
                    Contig997                         53   56     KLEQ
                   Contig1089                         50   53     TKLE
                   Contig1089                         53   57    EERLE
                   Contig1351                         53   58   QQLDEN
                   Contig1216                         52   57   REQLQQ
                   Contig1153                         53   58   KQLKKN
                   Contig1296                         52   56    KLDKN
                   Contig1428                         52   56    KLDKN
                   Contig1163                         35   40   EQLDEN
                   Contig1361                         54   58    ELEKN
                   Contig1375                         51   55    ELEKN
                   Contig1214                         50   54    KKRED
                   Contig1338                         51   55    KQLEN
                   Contig1195                         52   56    RKQLE
                   Contig1209                         53   57    EERLE
                   Contig1012                         47   51    KKYLE
                   Contig1136                         49   53    KKYLE
                   Contig1271                         53   57    QQLED
                   Contig1415                         62   66    EKLEN
                    Contig977                         56   60    EKLEN
                   Contig1045                         56   60    EKLEN
                   Contig1347                         54   58    KQLDD
                   Contig1325                         52   56    KQLDD
                    Contig712                         29   33    KQLDD
                   Contig1213                         54   58    KQLDD
                   Contig1130                         55   59    KQLDD
                   Contig1123                         53   57    RKQLD
SE 29 CO 115 SEfraction 0.201 p 0.0098 - P 0.002221
      Seed contig1110_20_27 - 3 members
                  Contig1110                         20    27    RKEKEKEE
                  Contig1133                         31    38    QQEKAKLE
                  Contig1369                         45    51     KKKERLE
SE 4 CO 0 SEfraction 1.000 p 0.0058 + P 0.005445

     Seed contig1335_116_121 - 26 members
                   Contig1335                        116   121    EDAPYF
                   Contig1291                        132   136     DAKYF
                   Contig1306                        116   121    EDAPYF
                   Contig1164                        118   123    DEAQYF
                   Contig1400                        112   116     DAKYF
                   Contig1271                        112   116     DAQYF
                   Contig1147                        113   117     DAQYF
                   Contig1287                        119   123     DSQYF
                   Contig1398                        116   120     DAPYF
                   Contig1397                        113   118    EDAYYF
                   Contig1137                         89    94    EEAEYF
                    Contig985                        104   109    QGADYF
                   Contig1189                        114   118     DAGYF
                   Contig1383                         98   103    QKANYF
                   Contig1169                        114   119    DDAKYL
                   Contig1141                        101   106    QKANYF
                    Contig943                        101   106    QKANYF
                    Contig962                        106   111    DKANYF
                   Contig1330                         80    85    DKANFF
                   Contig1429                        121   126    EKAHYF
                   Contig1392                         98   101      NAPY
                   Contig1292                        105   108      NAPY
                   Contig1000                         81    84      NAPY
                   Contig1261                         99   102      NAPY
                   Contig1257                         98   101      NAPY
                   Contig1032                         78    81      NAPY
SE 14 CO 14 SEfraction 0.500 p 0.0065 + P 0.006470

     Seed contig1134_18_23 - 10 members
                  Contig1134                         18    23     EPGKQH
                  Contig1248                         47    52     EPGKQH
                  Contig1209                         46    51     EPGKQH
                  Contig1316                         44    49     EPGIQH
                  Contig1257                         62    66      PAKRH
                   Contig943                         61    66     EPLKSH
                  Contig1388                         44    49     EPGIQH
                  Contig1184                         43    47      PAQKH
                  Contig1157                         43    47      PAQKH
                  Contig1300                         63    68     EELKKH
SE 7 CO 4 SEfraction 0.636 p 0.0110 + P 0.011712

      Seed contig1291_48_53 - 12 members
                   Contig1291                        48    53     NEKDQE
                   Contig1083                        43    47      NETDK
                   Contig1358                        46    51     NEIDRE
                   Contig1374                        40    45     NETEKE
                   Contig1265                        39    43      NDADK
                   Contig1344                        46    51     NEIDRE
                   Contig1198                        46    51     NETDKE
                   Contig1336                        46    51     NEKDQE
                   Contig1378                        46    51     NEIDRE
                   Contig1415                        58    62      ETERE
                   Contig1235                        40    45     NETEKE
                   Contig1366                        20    24      NEKDK
SE 0 CO 13 SEfraction 0.000 p 0.0151 - P 0.013374

       Seed contig722_67_72 - 54 members
                    Contig722                        67    72     ALNRQE
                   Contig1412                        94    99     ALNRQE
                   Contig1313                        91    96     ALNRKD
                   Contig1234                        85    90     ALNRKE
                   Contig1424                        83    88     ALNRDQ
                  Contig1134                          56    61   ALNRDQ
                  Contig1388                          82    87   ALNRKE
                  Contig1118                          71    76   ALNRED
                  Contig1374                          82    87   ALNRKD
                  Contig1280                          82    87   ALNRED
                  Contig1250                          82    87   ALNRQQ
                  Contig1200                          85    90   ALNRDQ
                  Contig1298                          85    90   ALNRDQ
                  Contig1240                          94    99   ALNRED
                    Contig838                         94    99   ALNRKD
                  Contig1297                          84    89   AINRKE
                    Contig933                         99   104   ALNRKD
                  Contig1235                          82    87   ALNRED
                  Contig1071                          59    64   ALNRDQ
                  Contig1218                          92    97   ALNRQE
                  Contig1204                          88    93   ALNRKE
                  Contig1208                          92    96    ALNRQ
                  Contig1387                          97   102   ALNRKE
                  Contig1398                          99   104   ALNRDQ
                  Contig1225                          85    90   ALNRDQ
                  Contig1406                          84    89   ALNRRD
                  Contig1062                          83    87    ALNRD
                  Contig1314                          82    87   ALNRKE
                  Contig1157                          66    71   AINRKE
                  Contig1269                          85    90   ALNRDQ
                  Contig1142                          85    90   ALNRDQ
                  Contig1415                         103   107    ALNRQ
                  Contig1275                          85    90   ALNRKE
                    Contig993                         86    90    INRKD
                  Contig1372                          87    91    INREQ
                  Contig1428                          98   102    ALNRE
                  Contig1216                          99   103    ALNRE
                  Contig1136                          85    90   ALNRQQ
                  Contig1189                          97   102   ALNRRD
                  Contig1137                          73    78   AVNRKE
                  Contig1345                          86    90    INRDQ
                  Contig1304                          87    91    ALNRQ
                  Contig1332                          95    99    ALNRN
                  Contig1383                          83    87    VNRDQ
                  Contig1038                          81    85    VNRDQ
                  Contig1261                          87    91    VNRDQ
                  Contig1392                          86    90    VNRDQ
                  Contig1400                          96   100    LNRQD
                  Contig1292                          93    97    VNRDQ
                  Contig1373                          97   101    LNRRD
                  Contig1116                          89    92     LNRE
                  Contig1102                          82    86    VNRDQ
                  Contig1274                          81    85    VNRDQ
                  Contig1348                          94    97     INRK
SE 22 CO 33 SEfraction 0.400 p 0.0153 + P 0.017516

     Seed contig1117_102_107 - 106 members
                   Contig1117                        102   107   TANRST
                    Contig712                         75    80   TANRHT
                   Contig1361                        103   108   TANRET
                   Contig1288                        100   105   TANRHT
                   Contig1180                        100   105   TANRHT
                   Contig1223                        100   105   TANRHT
                   Contig1375                        100   105   TANRHT
                   Contig1409                        103   108   TANRHT
                   Contig1185                         97   102   TANRHT
                   Contig1132                         74    79   TANRHT
                   Contig1358                        100   105   TANRET
                   Contig1419                        101   106   TANRHT
                   Contig1287                        102   107   TANRHT
                   Contig1414                         93    98   TANRHT
                   Contig1325                         99   104   TANRHT
                   Contig1391                         70    75   TANRHT
                   Contig1296                        102   107   TANRHT
Contig1123    98   103   TANRHT
Contig1056    81    86   TANRET
Contig1306   100   105   TANRHT
Contig1351    99   104   TANRHT
Contig1268    98   102    ANRET
Contig1305    98   102    ANRET
Contig1310   100   104    ANRET
Contig1352    99   104   TANRET
Contig1278    94    99   TANRET
Contig1336    97   101    ANRHT
Contig1394    97   101    ANRET
Contig1217    97   101    ANRET
Contig1381    93    98   TANRAT
 Contig768    97   102   TANRHT
Contig1382    94    99   TANRET
Contig1147    96   101   TENRET
Contig1270    74    79   TANRHT
 Contig913    93    98   TANRHT
Contig1347   102   107   TANRAT
Contig1376    94    99   TENRHT
Contig1353   102   107   TANRET
Contig1360    93    98   TANRET
Contig1380   100   104    ANRET
Contig1418   100   105   TANRAT
Contig1228    97   101    ANRET
Contig1239   100   105   TANRHT
Contig1115   102   107   TANRHT
Contig1173    89    93    ANRET
Contig1293    95   100   TANRHT
Contig1151    95    99    ANRQT
Contig1172    96   101   TANRAT
Contig1338    99   104   TANRAT
Contig1344   101   106   TANRHT
Contig1061    94    98    ANRET
Contig1407    97   102   TANRST
Contig1315    97   102   TANRAT
Contig1135    76    81   TANRET
Contig1113   105   110   TANRET
Contig1393    96   101   TANRAT
Contig1192    97   101    ANRET
Contig1303   101   105    ANRET
Contig1282   101   106   TANRHT
Contig1286    94    99   TANRET
 Contig951    75    80   TANRET
Contig1386    93    98   TANRAT
Contig1163    88    92    ANRET
Contig1224   105   109    ANRET
Contig1333   103   107    ANRET
Contig1214    87    91    DANRE
Contig1284    98   103   TANRET
 Contig899    76    80    ANRAT
Contig1108    74    78    ANRAT
 Contig988    64    68    ANRAT
Contig1349   100   105   TANRHT
Contig1427    99   104   TANRET
Contig1144    93    98   TANRET
Contig1210   100   104    ANRHT
Contig1197    97   101    ANRET
Contig1405    93    98   TANRAT
Contig1128    93    98   TANRAT
Contig1369    96   101   TANRET
Contig1309   102   107   TANRET
Contig1362   101   105    ANRAT
Contig1222    96   101   TANRET
Contig1069    71    75    ANRAT
 Contig977    97   102   TANRAT
Contig1416    83    86     TANR
Contig1213   101   105    ANRET
Contig1429   106   110    ANRET
                  Contig1390                         102   107    TANRAT
                  Contig1130                         101   105     ANRET
                  Contig1153                          89    93     ANRET
                  Contig1230                         102   106     ANRAT
                  Contig1081                         101   106    TANRAT
                  Contig1423                          94    99    TANRAT
                  Contig1259                          97   101     ANRGT
                   Contig962                          90    93      TANR
                  Contig1311                          85    88      TANR
                  Contig1141                          85    88      TANR
                  Contig1182                          83    86      TANR
                  Contig1342                          83    86      TANR
                  Contig1000                          68    71      TANR
                   Contig943                          85    88      TANR
                  Contig1295                          85    88      TANR
                  Contig1430                          99   103     ANRAT
                  Contig1359                          83    88    WTANRE
                  Contig1198                          99   102      ANRA
                  Contig1334                          91    94      ANRA
                  Contig1014                         101   104      ANRA
SE 24 CO 91 SEfraction 0.209 p 0.0231 - P 0.021320

      Seed contig1137_92_97 - 7 members
                  Contig1137                          92    97    EYFVHK
                  Contig1116                         106   110     DYFRH
                  Contig1419                         119   123     DYFRH
                  Contig1133                         101   105     DYFRY
                  Contig1412                         113   118    DYFVYK
                  Contig1277                         112   116     DYFRH
                  Contig1275                         104   109    RYFVYK
SE 5 CO 3 SEfraction 0.625 p 0.0340 + P 0.038729

      Seed contig1130_61_68 - 132 members
                   Contig1130                        61    68     LKKIFKKI
                   Contig1135                        33    40    NLKTIFGK
                   Contig1295                        47    54    GLRAVFGK
                   Contig1413                        47    54    GLRAVFGK
                   Contig1228                        58    65    NLKTIFGK
                   Contig1420                        57    64    NLQKIFQQ
                   Contig1402                        45    52    GLKAVFNK
                   Contig1261                        49    56    NLRAIFNK
                   Contig1257                        47    54    GLREVFKN
                   Contig1032                        27    34    GLREVFKN
                   Contig1117                        58    65    NLKTIFAK
                   Contig1418                        58    65    NLKEIFKK
                   Contig1419                        59    66    NLKGIFKK
                    Contig985                        51    58    GLREVFKK
                    Contig943                        47    54    GLKNVFKN
                   Contig1394                        59    66    NLKGIFKQ
                   Contig1217                        59    66    NLKGIFKQ
                   Contig1392                        49    56    NLKTIFKK
                   Contig1376                        58    65    NLKTIFGK
                   Contig1292                        57    64    NLRAIFKK
                   Contig1173                        48    55    NLKTIFGK
                   Contig1172                        54    61    NLKRIFGK
                   Contig1412                        55    62    NLRKIFKK
                   Contig1311                        47    54    GLREVFKK
                   Contig1421                        47    54    GLREVFKK
                   Contig1348                        57    64    KLKEIFAK
                   Contig1163                        40    47    NLKTIFKN
                   Contig1163                        45    51     FKNIYEK
                   Contig1396                        59    66    NLKTIFGK
                   Contig1339                        47    54    GLREVFKK
                   Contig1151                        59    66    NLRSIFAK
                    Contig995                        47    54    GLKKVFKK
                   Contig1185                        58    65    NLKKIFGK
                   Contig1263                        53    60    NLKNIFGK
                   Contig1132                        34    41    NLKDIFAK
                   Contig1222                        58    65    NLKRIFKE
Contig1337   54   61   NLKRIFQK
Contig1194   51   58   GLRAVFKK
Contig1116   58   65    NLKTIFKN
Contig1322   53   60   RLKTIFQN
Contig1182   47   54   GLKKVFNK
Contig1361   58   65    NLKTIFEK
Contig1170   47   54   GLREVFKK
Contig1372   48   55   NLKNIFNK
Contig1383   45   52   GLKKVFKK
Contig1330   26   33   GLKAVFKK
Contig1111   51   58   GLRAVFGK
Contig1133   40   47   NLKNIFAK
Contig1424   53   60   RLKTIFQN
Contig1062   53   60   RLKTIFQN
Contig1353   56   63    KLKVIFKK
Contig1198   59   66   NLKDIFKK
 Contig972   59   66    NLKTIFEK
Contig1208   54   61    KLKEIFKK
 Contig962   53   60   NLRKIFKK
Contig1334   55   62   NLQKIFAK
Contig1351   58   65    NLKTIFKN
 Contig970   58   65   NLKEIFKQ
 Contig988   33   40   NLKTIFGK
Contig1282   60   67   KLKEIFQK
Contig1345   47   54   GLKIVFQK
Contig1303   65   72    LKEIFKKI
Contig1423   56   63    KLKEIFKK
Contig1141   47   54   GLREVFKN
Contig1234   55   62    ILKTIFEN
Contig1184   28   35   GLKVVFSK
Contig1398   58   65   NLKKIFTQ
Contig1216   58   65    NLKTIFEK
Contig1297   47   54   GLREVFRK
Contig1429   56   63    NLKTIFKN
Contig1270   32   39   NLRKIFKK
Contig1307   51   58   GLKIVFQK
Contig1277   55   62    NLKTIFKK
 Contig953   29   36    NLKTIFKK
Contig1405   55   62   KLKNIFQQ
Contig1128   55   62   KLKNIFQQ
Contig1403   58   65   NLKDIFKK
Contig1014   61   68   NLKDIFKK
Contig1278   56   63   NLKGVFAK
Contig1352   56   63   NLKRIFGK
Contig1157   28   35   GLKLVFRK
Contig1071   30   37   RLQTMFQN
Contig1360   56   63   NLKDIFAK
Contig1237   59   66    NLKKIFAK
Contig1218   56   63    LKKIFAKI
 Contig998   55   62   NLRKIFKK
Contig1397   59   66   NLKGVFAK
Contig1038   45   52   GLQVVFGK
Contig1165   61   68    NLKSIFKK
Contig1366   33   40    NLKSIFKK
Contig1102   45   52   GLKNVFKK
Contig1134   27   34   RLERIFAN
Contig1416   45   52   GLKKVFDK
Contig1362   58   65   NLRKIFAK
Contig1401   51   58   GLKVVFMK
Contig1342   45   52   GLKIVFDK
Contig1210   61   68   NLKEIFGN
Contig1410   59   66    KLKKIFKE
Contig1267   45   52   GLQVVFKK
Contig1036   45   52   GLKVVFQK
Contig1304   58   65    NLKTIFDK
Contig1265   47   54   GLQVVFKK
Contig1321   55   62   RLKTIFQN
Contig1377   59   66   NLKKFFQK
 Contig993   47   54   SLRAIFKN
                      Contig1428                         57   63    FKKYFQQ
                      Contig1324                         51   58   GLQVVFMK
                        Contig863                        30   37   NLEKIFQK
                      Contig1280                         53   60    NLEKIFEK
                      Contig1110                         31   38    NLKFIFKK
                      Contig1314                         53   60   TLKQIFQN
                      Contig1113                         59   66   NLKGIFKN
                      Contig1158                         33   40    NLEKIFEK
                      Contig1153                         58   65    NLKTIFEN
                      Contig1259                         61   68   NLQKIFKE
                      Contig1235                         53   60    NLEKIFEK
                      Contig1195                         58   65    KLKEIFTQ
                      Contig1142                         56   63   SLKSMFEN
                      Contig1315                         57   64    RLKIIFKG
                      Contig1197                         56   63   NLRKIFEN
                      Contig1388                         53   60   RLESMFQN
                      Contig1406                         55   62   RLQKMFQN
                      Contig1089                         55   62   RLEQMFNN
                      Contig1209                         55   62   RLEQMFEN
                      Contig1343                         54   61   NLQKIFKM
                      Contig1432                         45   52   GLKIVFDK
                      Contig1274                         44   51   GLKIVFDK
                      Contig1404                         61   66      EKIFKE
                      Contig1023                         40   47   NLKKLFEK
                      Contig1300                         53   60   NLKKLFKQ
                      Contig1374                         53   59     NLEKIFN
                      Contig1225                         55   62   RLEQMFKN
    SE 45 CO 94 SEfraction 0.324 p 0.0334 + P 0.043331




Each motif is composed of a number of substrings from contigs. Motif lists commence
with the seed contig, showing the location of the motif constituent substring within the
contig, as well as the number of motif member substrings.
For example: Seed Contig1117_96_101 - 246 members
Column 1 states the name of the contig from which the motif constituent substring originates
Columns 2 and 3 provide start and end of motif in each contig
Column 4 shows the conceptual translation from the contig, constituent of the motif.

Following the motif constitient sequences is stated the fraction of respratory distress (SE)
and non-respiratory distress (CO) isolate dominant contigs in the motif, and the
hypergeometrical p and P for the distribution, given the number of motif members and
total numbers of severe and mild isolate dominants.

								
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