S P C U I P A 1. Gene profiling and pathway analysis of

SCIENTIFIC PUBLICATIONS CITING USE OF INGENUITY PATHWAYS ANALYSIS 1. Gene profiling and pathway analysis of neuroendocrine transdifferentiated prostate cancer cells. Prostate. 2008 Sep 22. [Epub ahead of print] Mori R, Xiong S, Wang Q, Tarabolous C, Shimada H, Panteris E, Danenberg KD, Danenberg PV, Pinski JK. http://www.ncbi.nlm.nih.gov/pubmed/18814146?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 2. Proteomic and computational analysis of bronchoalveolar proteins during the course of the acute respiratory distress syndrome. Am J Respir Crit Care Med. 2008 Oct 1;178(7):701-9. Epub 2008 Jul 24. Chang DW, Hayashi S, Gharib SA, Vaisar T, King ST, Tsuchiya M, Ruzinski JT, Park DR, Matute-Bello G, Wurfel MM, Bumgarner R, Heinecke JW, Martin TR. http://www.ncbi.nlm.nih.gov/pubmed/18658106?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 3. Gene expression profiles in livers from diclofenac-treated rats reveal intestinal bacteria-dependent and -independent pathways associated with liver injury. J Pharmacol Exp Ther. 2008 Sep 18. [Epub ahead of print] Deng X, Liguori MJ, Sparkenbaugh EM, Waring JF, Blomme EA, Ganey PE, Roth RA. http://jpet.aspetjournals.org/cgi/reprint/jpet.108.140335v1 4. Gene expression analysis of bromine-induced burns in porcine skin. Toxicol Lett. 2008 Aug 27. [Epub ahead of print] Price JA, Rogers JV, McDougal JN, Shaw MQ, Reid FM, Kiser RC, Graham JS. http://www.ncbi.nlm.nih.gov/pubmed/18790026?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 5. Lymphocytes from Patients with Type 1 diabetes Display a Distinct Profile of Chromatin Histone H3 Lysine 9 Dimethylation: An Epigenetic Study in Diabetes. Diabetes. 2008 Sep 5. [Epub ahead of print] Miao F, Smith DD, Zhang L, Min A, Feng W, Natarajan R. http://www.ncbi.nlm.nih.gov/pubmed/18776137?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 6. Transcriptomic analysis of PPAR-dependent alterations during cardiac hypertrophy. Physiol Genomics. 2008 Sep 23. [Epub ahead of print] Smeets PJ, de Vogel-van den Bosch HM, Willemsen PH, Stassen AP, Ayoubi T, Van der Vusse GJ, van Bilsen M. http://www.ncbi.nlm.nih.gov/pubmed/18812456?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ 1 of 156 RVDocSum 7. Gene expression subtraction of non-cancerous lung from smokers and non-smokers with adenocarcinoma, as a predictor for smokers developing lung cancer. J Exp Clin Cancer Res. 2008 Sep 24;27(1):45. [Epub ahead of print] Stav D, Bar I, Sandbank J. http://www.ncbi.nlm.nih.gov/pubmed/18811983?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 8. Quantitative proteomic analysis of macrophage rafts reveals compartmentalized activation of the proteasome and of proteasome-mediated ERK activation in response to lipopolysaccharide. Mol Cell Proteomics. 2008 Sep 23. [Epub ahead of print] Dhungana S, Merrick BA, Tomer KB, Fessler MB. http://www.mcponline.org/cgi/reprint/M800286-MCP200v1 9. MicroRNA-21 Targets a Network of Key Tumor-Suppressive Pathways in Glioblastoma Cells. Cancer Res., Oct 2008; 68: 8164 - 8172. Thales Papagiannakopoulos, Alice Shapiro, and Kenneth S. Kosik. http://cancerres.aacrjournals.org/cgi/content/abstract/68/19/8164?maxtoshow =&HITS=&hits=&RESULTFORMAT=&fulltext=ingenuity+pathway+analysis&andore xactfulltext=and&searchid=1&FIRSTINDEX=10&fdate=8/1/2008&resourcetype=H WCIT 10. High Resolution Array-Comparative Genomic Hybridization Profiling Reveals DNA Copy Number Alterations associated with Medullary Thyroid Carcinoma. J Clin Endocrinol Metab. 2008 Sep 2. [Epub ahead of print] Ye L, Santarpia L, Cote GJ, ElNaggar AK, Gagel RF. http://jcem.endojournals.org/cgi/rapidpdf/jc.2008-0912v1 11. Genomic Analysis Reveals Age-Dependent Innate Immune Responses to Severe Acute Respiratory Syndrome Coronavirus. J Virol. 2008 Oct;82(19):9465-76. Epub 2008 Jul 16. Baas T, Roberts A, Teal TH, Vogel L, Chen J, Tumpey TM, Katze MG, Subbarao K. http://www.ncbi.nlm.nih.gov/pubmed/18632870?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 12. Rapid Recruitment of Temporally Distinct Vascular Gene Sets by Estrogen. Mol Endocrinol. 2008 Sep 11. [Epub ahead of print] Schnoes KK, Jaffe IZ, Iyer L, Dabreo A, Aronovitz M, Newfell B, Hansen U, Rosano G, Mendelsohn ME. http://mend.endojournals.org/cgi/rapidpdf/me.2008-0044v1 13. In Vivo Measurement of Synthesis Rate of Individual Skeletal Muscle Mitochondrial Proteins. Am J Physiol Endocrinol Metab. 2008 Sep 2. [Epub ahead of print] Jaleel A, Short KR, Asmann YW, Klaus K, Morse D, Ford GC, Nair KS. http://www.ncbi.nlm.nih.gov/pubmed/18765679?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ 2 of 156 RVDocSum 14. GLI2 Knockdown Using an Antisense Oligonucleotide Induces Apoptosis and Chemosensitizes Cells to Paclitaxel in Androgen-Independent Prostate Cancer. Clin Cancer Res. 2008 Sep 15;14(18):5769-77. Narita S, So A, Ettinger S, Hayashi N, Muramaki M, Fazli L, Kim Y, Gleave ME. http://www.ncbi.nlm.nih.gov/pubmed/18794086?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 15. Hypothalamus transcriptome profile suggests an anorexia-cachexia syndrome in the anx/anx mouse model. Physiol Genomics. 2008 Sep 23. [Epub ahead of print] Mercader JM, Lozano JJ, Sumoy L, Dierssen M, Visa J, Gratacos M, Estivill X. http://www.ncbi.nlm.nih.gov/pubmed/18812457?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 16. Gene expression profiling of skeletal muscle in exercise-trained and sedentary rats with inborn high and low VO2max. Physiol Genomics. 2008 Sep 9. [Epub ahead of print] Bye A, Hoydal MA, Catalucci D, Langaas M, Kemi OJ, Beisvag V, Koch LG, Britton SL, Ellingsen O, Wisloff U. http://www.ncbi.nlm.nih.gov/pubmed/18780757?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 17. BAT3 and SET1A form a complex with CTCFL/BORIS to modulate H3K4 histone dimethylation and gene expression. Mol Cell Biol. 2008 Sep 2. [Epub ahead of print] Nguyen P, Bar-Sela G, Sun L, Bisht KS, Cui H, Kohn E, Feinberg AP, Gius D. http://www.ncbi.nlm.nih.gov/pubmed/18765639?ordinalpos=2&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 18. Uncoupling the mechanisms that facilitate cell survival in hormone-deprived bovine mammary explants. J Mol Endocrinol. 2008 Sep;41(3):103-16. Epub 2008 Jun 5. Brennan AJ, Sharp JA, Lefèvre CM, Nicholas KR. http://www.ncbi.nlm.nih.gov/pubmed/18535120?ordinalpos=2&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 19. Global Liver Proteomics of Rats Exposed for Five Days to Phenobarbital Identifies Changes Associated with Cancer and with Cyp Metabolism. Toxicol Sci. 2008 Sep 16. [Epub ahead of print] Dail MB, Shack LA, Chambers JE, Burgess SC. http://www.ncbi.nlm.nih.gov/pubmed/18796496?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 3 of 156 20. Deletion of Mtg16, a Target of t(16;21), Alters Hematopoietic Progenitor Cell Proliferation and Lineage Allocation. Mol Cell Biol. 2008 Aug 18. [Epub ahead of print] Chyla BJ, Moreno-Miralles I, Steapleton MA, Thompson MA, Bhaskara S, Engel M, Hiebert SW. http://www.ncbi.nlm.nih.gov/pubmed/18710942?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 21. Dichotomous metabolism of Enterococcus faecalis induced by haematin starvation modulates colonic gene expression. J Med Microbiol. 2008 Oct;57(Pt 10):1193-204. Allen TD, Moore DR, Wang X, Casu V, May R, Lerner MR, Houchen C, Brackett DJ, Huycke MM. http://www.ncbi.nlm.nih.gov/pubmed/18809545?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 22. Network Analysis of Temporal Effects of Intermittent- and Sustained Hypoxia on Rat Lungs. Physiol Genomics, Sep 2008. Wei Wu, Nilesh B. Dave, Guoying Yu, Patrick J. Strollo, Elizabeta Kovkarova-Naumovski, Stefan W. Ryter, Stephen R. Reeves, Ehab Dayyat, Yang Wang, Augustine M. K. Choi, David Gozal, and Naftali Kaminski. http://physiolgenomics.physiology.org/cgi/content/abstract/00258.2007v1?maxt oshow=&HITS=&hits=&RESULTFORMAT=&fulltext=ingenuity+pathway+analysis& andorexactfulltext=and&searchid=1&FIRSTINDEX=50&fdate=8/1/2008&resourcet ype=HWCIT 23. Robust and efficient identification of biomarkers by classifying features on graphs. Bioinformatics. 2008 Sep 15;24(18):2023-9. Epub 2008 Jul 24. Hwang T, Sicotte H, Tian Z, Wu B, Kocher JP, Wigle DA, Kumar V, Kuang R. http://www.ncbi.nlm.nih.gov/pubmed/18653521?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 24. Regional variation in gene expression in the healthy colon is dysregulated in ulcerative colitis. Gut, Oct 2008; 57: 1398 – 1405. C L Noble, A R Abbas, J Cornelius, C W Lees, G-T Ho, K Toy, Z Modrusan, N Pal, F Zhong, S Chalasani, H Clark, I D Arnott, I D Penman, J Satsangi, and L Diehl. http://gut.bmj.com/cgi/content/abstract/57/10/1398?maxtoshow=&HITS=&hits =&RESULTFORMAT=&fulltext=ingenuity+pathway+analysis&andorexactfulltext=a nd&searchid=1&FIRSTINDEX=50&fdate=8/1/2008&resourcetype=HWCIT 25. Proteomic analysis reveals selective impediment of neuronal remodeling upon Borna disease virus infection. J. Virol., Oct 2008. Elsa Suberbielle, Alexandre Stella, Frédéric Pont, Céline Monnet, Emmanuelle Mouton, Lucile Lamouroux, Bernard Monsarrat, and Daniel Gonzalez-Dunia. http://jvi.asm.org/cgi/content/abstract/JVI.0161508v1?maxtoshow=&HITS=&hits=&RESULTFORMAT=&fulltext=ingenuity+pathway 4 of 156 +analysis&andorexactfulltext=and&searchid=1&FIRSTINDEX=60&fdate=8/1/200 8&resourcetype=HWCIT 26. Genomic predictors of interindividual differences in response to DNA damaging agents. Genes Dev. 2008 Sep 19. [Epub ahead of print] Fry RC, Svensson JP, Valiathan C, Wang E, Hogan BJ, Bhattacharya S, Bugni JM, Whittaker CA, Samson LD. http://genesdev.cshlp.org/cgi/content/full/22/19/2621?maxtoshow=&HITS=&hi ts=&RESULTFORMAT=&fulltext=ingenuity+pathway+analysis&andorexactfulltext= and&searchid=1&FIRSTINDEX=60&fdate=8/1/2008&resourcetype=HWCIT 27. Contribution of Energy Restriction and Macronutrient Composition to Changes in Adipose Tissue Gene Expression during Dietary Weight-Loss Programs in Obese Women. J Clin Endocrinol Metab. 2008 Sep 9. [Epub ahead of print] Capel F, Viguerie N, Vega N, Dejean S, Arner P, Klimcakova E, Martinez A, Saris WH, Holst C, Taylor M, Oppert JM, Sørensen TI, Clément K, Vidal H, Langin D. http://jcem.endojournals.org/cgi/rapidpdf/jc.2008-0814v1 28. Soy Protein Isolate Reduces Hepatosteatosis in Yellow Avy/a Mice Without Altering Coat Color Phenotype. Exp Biol Med (Maywood). 2008 Oct;233(10):1242-54. Epub 2008 Sep 12. Badger TM, Ronis MJ, Wolff G, Stanley S, Ferguson M, Shankar K, Simpson P, Jo CH. http://www.ncbi.nlm.nih.gov/pubmed/18791133?ordinalpos=2&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 29. The HDAC inhibitor 4b ameliorates the disease phenotype and transcriptional abnormalities in Huntington's disease transgenic mice. PNAS, Sep 2008. Elizabeth A. Thomas, Giovanni Coppola, Paula A. Desplats, Bin Tang, Elisabetta Soragni, Ryan Burnett, Fuying Gao, Kelsey M. Fitzgerald, Jenna F. Borok, David Herman, Daniel H. Geschwind, and Joel M. Gottesfeld. http://www.pnas.org/content/early/2008/09/29/0804249105.abstract?maxtosh ow=&HITS=&hits=&RESULTFORMAT=&fulltext=ingenuity+pathway+analysis&and orexactfulltext=and&searchid=1&FIRSTINDEX=70&fdate=8/1/2008&resourcetype =HWCIT 30. Early steps of the virus replication cycle are inhibited in prostate cancer cells resistant to oncolytic vesicular stomatitis virus. J. Virol., Oct 2008. Brooke L. Carey, Maryam Ahmed, Shelby Puckett, and Douglas S. Lyles. http://jvi.asm.org/cgi/content/abstract/JVI.0150808v1?maxtoshow=&HITS=&hits=&RESULTFORMAT=&fulltext=ingenuity+pathway +analysis&andorexactfulltext=and&searchid=1&FIRSTINDEX=70&fdate=8/1/200 8&resourcetype=HWCIT 31. caBIG VISDA: modeling, visualization, and discovery for cluster analysis of genomic data. BMC Bioinformatics. 2008 Sep 18;9(1):383. [Epub ahead of print] Zhu Y, Li H, Miller DJ, Wang Z, Xuan J, Clarke R, Hoffman EP, Wang Y. 5 of 156 http://www.biomedcentral.com/content/pdf/1471-2105-9-383.pdf 32. Expression Profile of CREB knockdown in Myeloid Leukemia Cells. BMC Cancer. 2008 Sep 18;8(1):264. [Epub ahead of print] Pellegrini M, Cheng JC, Voutila J, Judelson D, Taylor J, Nelson SF, Sakamoto KM. http://www.biomedcentral.com/content/pdf/1471-2407-8-264.pdf 33. Approaches to reduce false positives and false negatives in the analysis of microarray data: applications in type I diabetes research. BMC Genomics 2008, 9(Suppl 2):S12. Jian Wu, Nataliya I Lenchik and Ivan C Gerling. http://www.biomedcentral.com/content/pdf/1471-2164-9-S2-S12.pdf 34. Transcription factor and microRNA regulation in androgen-dependent and independent prostate cancer cells. BMC Genomics 2008, 9(Suppl 2):S22. Guohua Wang, Yadong Wang, Weixing Feng, Xin Wang, Jack Y Yang, Yuming Zhao, Yue Wang and Yunlong Liu http://www.biomedcentral.com/content/pdf/1471-21649-S2-S22.pdf 35. Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data. BMC Medical Genomics 2008, 1:39. Jiangang Liu, Andrew Campen, Shuguang Huang, Sheng-Bin Peng, Xiang Ye, Mathew Palakal, A Keith Dunker , Yuni Xia and Shuyu Li. http://www.biomedcentral.com/content/pdf/1755-8794-1-39.pdf 36. Genomic variation in myeloma: design, content, and initial application of the Bank On A Cure SNP Panel to detect associations with progression-free survival. BMC Medicine 2008, 6:26. Van Ness B, Ramos C, Haznadar M, Hoering A, Haessler J, Crowley J, Jacobus S, Oken M, Rajkumar V, Greipp P, Barlogie B, Durie B, Katz M, Atluri G, Fang G, Gupta R, Steinbach M, Kumar V, Mushlin R, Johnson D, Morgan G. http://www.biomedcentral.com/content/pdf/1741-7015-6-26.pdf 37. Hepatocyte RXRalpha deficiency in matured and aged mice: impact on the expression of cancer-related hepatic genes in a gender-specific manner. BMC Genomics. 2008 Aug 28;9:403. Guo M, Gong L, He L, Lehman-McKeeman L, Wan YJ. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1 8755030 38. Cia5d regulates a new fibroblast-like synoviocyte invasion-associated gene expression signature. Arthritis Res Ther. 2008 Aug 15;10(4):R92. [Epub ahead of print] Laragione T, Brenner M, Li W, Gulko PS. http://arthritisresearch.com/content/pdf/ar2476.pdf 39. Implication of human N--acetyltransferase 5 in cellular proliferation and carcinogenesis. A Ametzazurra, E Larrea, M P Civeira, J Prieto and R Aldabe. http://www.nature.com/onc/journal/vaop/ncurrent/abs/onc2008332a.html 6 of 156 40. Refinement of breast cancer classification by molecular characterization of histological special types. J Pathol. 2008 Oct;216(2):141-50. Weigelt B, Horlings HM, Kreike B, Hayes MM, Hauptmann M, Wessels LF, de Jong D, Van de Vijver MJ, Van't Veer LJ, Peterse JL. http://www.ncbi.nlm.nih.gov/pubmed/18720457?ordinalpos=2&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 41. Myocardial transcriptional profiles in a murine model of sepsis: Evidence for the importance of age. Pediatric Critical Care Medicine. 9(5):530-535, September 2008. Checchia PA, Schierding W, Polpitiya A, Dixon D, Macmillan S, Muenzer J, Stromberg P, Coopersmith CM, Buchman TG, Cobb JP. http://www.ncbi.nlm.nih.gov/pubmed/18679145?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 42. Changes of neuron-specific and apoptosis gene expression levels after ventromedial hypothalamic lesions in rat intestine. Exp Biol Med (Maywood). 2008 Sep 12. [Epub ahead of print] Kiba T, Kintaka Y, Suzuki Y, Nakata E, Osaka T, Ishigaki Y, Inoue S. http://www.ncbi.nlm.nih.gov/pubmed/18791130?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 43. Potential non-synonymous single nucleotide polymorphisms (nsSNPs) associated with toxicity in metastatic clear cell renal cell carcinoma (MCCRCC) patients (pts) treated with sunitinib. Journal of Clinical Oncology, 2008 ASCO Annual Meeting Proceedings (Post-Meeting Edition). Vol 26, No 15S (May 20 Supplement), 2008: 5009. P. W. Faber, S. A. Vaziri, L. Wood, C. Nemec, P. Elson, J. A. Garcia, B. I. Rini, R. M. Bukowski, M. K. Ganapathi and R. Ganapathi. http://meeting.ascopubs.org/cgi/content/abstract/26/15_suppl/5009 44. Establishment and functional characterization of a tracheal epithelial cell line RTEC11 from transgenic rats harboring temperature-sensitive simian virus 40 large T-antigen. Cell Biol Int. 2008 Aug 7. [Epub ahead of print] Tabuchi Y, Doi T, Takasaki I, Takahashi RI, Ueda M, Suzuki Y, Obinata M. http://www.ncbi.nlm.nih.gov/pubmed/18725308?ordinalpos=16&itool=EntrezSys tem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed _RVDocSum 45. Microarray analysis of choroid/RPE gene expression in marmoset eyes undergoing changes in ocular growth and refraction. Mol Vis. 2008 Aug 11;14:1465-79. Shelton L, Troilo D, Lerner MR, Gusev Y, Brackett DJ, Rada JS. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2504533 46. Sex-specific pathways in early cardiac response to pressure overload in mice. J Mol Med. 2008 Sep;86(9):1013-24. Epub 2008 Jul 30. Witt H, Schubert C, Jaekel J, 7 of 156 Fliegner D, Penkalla A, Tiemann K, Stypmann J, Roepcke S, Brokat S, Mahmoodzadeh S, Brozova E, Davidson MM, Ruiz Noppinger P, Grohé C, RegitzZagrosek V. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1 8665344 47. Gene profiling analysis of ALVAC infected human monocyte derived dendritic cells. Vaccine. 2008 Sep 15;26(39):5004-13. Epub 2008 Aug 6. Harenberg A, Guillaume F, Ryan EJ, Burdin N, Spada F. http://www.ncbi.nlm.nih.gov/pubmed/18691624?ordinalpos=2&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 48. Identification of functional networks of estrogen- and c-Myc-responsive genes and their relationship to response to tamoxifen therapy in breast cancer. PLoS ONE. 2008 Aug 20;3(8):e2987. Musgrove EA, Sergio CM, Loi S, Inman CK, Anderson LR, Alles MC, Pinese M, Caldon CE, Schütte J, Gardiner-Garden M, Ormandy CJ, McArthur G, Butt AJ, Sutherland RL. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1 8714337 49. Meta-Analysis of Microarray Studies Reveals a Novel Hematopoietic Progenitor Cell Signature and Demonstrates Feasibility of Inter-Platform Data Integration. PLoS ONE. 2008 Aug 13;3(8):e2965. Sohal D, Yeatts A, Ye K, Pellagatti A, Zhou L, Pahanish P, Mo Y, Bhagat T, Mariadason J, Boultwood J, Melnick A, Greally J, Verma A. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2495035 50. Microarray analysis of retinal gene expression in chicks during imposed myopic defocus. Mol Vis. 2008 Aug 31;14:1589-99. Schippert R, Schaeffel F, Feldkaemper MP. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2528026 51. HIV Replication Enhances Production of Free Fatty Acids, Low Density Lipoproteins and Many Key Proteins Involved in Lipid Metabolism: A Proteomics Study. PLoS ONE. 2008 Aug 20;3(8):e3003. Rasheed S, Yan JS, Lau A, Chan AS. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2500163 52. The Evolving Transcriptome of Head and Neck Squamous Cell Carcinoma: A Systematic Review. PLoS ONE. 2008 Sep 15;3(9):e3215. Yu YH, Kuo HK, Chang KW. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2533097 53. Bortezomib combined with histone deacetylase inhibitor ITF2357 or arsenic trioxide exerts aynergistic anti-proliferative and pro-apoptotic effect on P39 cells. Journal of Clinical Oncology, 2008 ASCO Annual Meeting Proceedings (Post-Meeting Edition). Vol 26, No 15S (May 20 Supplement), 2008: 18022. http://meeting.ascopubs.org/cgi/content/abstract/26/15_suppl/18022 8 of 156 54. The effects of dietary curcumin and rutin on colonic inflammation and gene expression in multidrug resistance gene-deficient (mdr1a− / − ) mice, a model of inflammatory bowel diseases. Br J Nutr. 2008 Sep 2:1-13. [Epub ahead of print] Nones K, Dommels YE, Martell S, Butts C, McNabb WC, Park ZA, Zhu S, Hedderley D, Barnett MP, Roy NC. http://www.ncbi.nlm.nih.gov/pubmed/18761777?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 55. Bortezomib in a myelodysplastic cell line: A gene expression study. Journal of Clinical Oncology, 2008 ASCO Annual Meeting Proceedings (Post-Meeting Edition). Vol 26, No 15S (May 20 Supplement), 2008: 18018. S. Galimberti, H. Savli, M. Canestraro, M. Canestraro, G. A. Palumbo, B. Nagy, F. Di Raimondo and M. Petrini. http://meeting.ascopubs.org/cgi/content/abstract/26/15_suppl/18018 56. Histone deacetylase inhibitor ITF2357 is effective on the P39 cells. A gene expression study. Journal of Clinical Oncology, 2008 ASCO Annual Meeting Proceedings (Post-Meeting Edition).Vol 26, No 15S (May 20 Supplement), 2008: 18024. M. Petrini, S. Galimberti, M. Canestraro, H. Savli, G. A. Palumbo and B. Nagy. http://meeting.ascopubs.org/cgi/content/abstract/26/15_suppl/18024 57. Prevention of MDR development in leukemia cells by micelle-forming polymeric surfactant. J Control Release. 2008 Jul 30. [Epub ahead of print] Sharma AK, Zhang L, Li S, Kelly DL, Alakhov VY, Batrakova EV, Kabanov AV. http://www.ncbi.nlm.nih.gov/pubmed/18722489?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 58. Haem-regulated eIF2[alpha] kinase is necessary for adaptive gene expression in erythroid precursors under the stress of iron deficiency. British Journal of Haematology. 143(1):129-137, October 2008. Liu, Sijin; Bhattacharya, Sanchita; Han, Anping ; Suragani, Rajasekhar N. V. S.; Zhao, Wanting ; Fry, Rebecca C.; Chen, Jane-Jane. http://pt.wkhealth.com/pt/re/bjha/abstract.00002328-20081001000017.htm;jsessionid=LlLPNw1NsYvVM1ngYShTWmv1plQJZrnydLflLLB2kTvFvnFLM b8N!542054210!181195628!8091!-1 59. Identification of genes that regulate epithelial cell migration using an siRNA screening approach. Nat Cell Biol. 2008 Aug 10. [Epub ahead of print] Simpson KJ, Selfors LM, Bui J, Reynolds A, Leake D, Khvorova A, Brugge JS. http://www.ncbi.nlm.nih.gov/pubmed/18690237?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 60. MaXlab: A novel application for the cross comparison and integration of biological signatures from microarray studies. In Silico Biology 8, 0029 (2008) Sabah Khalid, Mohsin Khan, Chandrasekhar Babu Gorle, Karl Fraser, Ping Wang, Xiaohui Liu and 9 of 156 Suling Li. http://www.bioinfo.de/isb/2008/08/0029/main.html 61. Expression of Collagen Genes in the Cones of Skin in the Duroc/Yorkshire Porcine Model of Fibroproliferative Scarring. J Burn Care Res. 2008 Sep-Oct;29(5):815-27. Zhu KQ, Carrougher GJ, Couture OP, Tuggle CK, Gibran NS, Engrav LH. http://www.ncbi.nlm.nih.gov/pubmed/18695616?ordinalpos=3&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 62. Closing the phenotypic gap between transformed neuronal cell lines in culture and untransformed neurons. J Neurosci Methods. 2008 Sep 15;174(1):31-41. Epub 2008 Jul 10. Myers TA, Nickerson CA, Kaushal D, Ott CM, Höner zu Bentrup K, Ramamurthy R, Nelman-Gonzalez M, Pierson DL, Philipp MT. http://www.ncbi.nlm.nih.gov/pubmed/18672002?ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_ RVDocSum 63. Distinct mechanisms of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyrimidine resistance revealed by transcriptome mapping in mouse striatum. 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