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Supplementary Table S1

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Supplementary Table S1 Powered By Docstoc
					28/22
At number            Gene IdentityGene Identity
Event 1              Chromosome 1                                   1
 9005557-9010027     AT1G25784.1: Mutator-like transposase          1
 9010258-9015226     AT1G25886.1: Ulp1 protease TE                  2
 9016252-9017450     AT1G25988.1: Unknown protein                   3
 9020380-9022769     AT1G26090.1: Unknown protein                   4
 9022542-9024081     AT1G26100.1: cytochrome B561                   5
 9024345-9027786     AT1G26110.1: Unknown protein                   6
 9024345-9027786     AT1G26110.2: Unknown protein                   7
 9028395-9031485     AT1G26120.1: esterase-                         8
 9033600-9038246     AT1G26130.1: haloacid dehalogenase-            9
 9038708-9039540     AT1G26140.1: Unknown protein                  10
 9039628-9043288     AT1G26150.1: PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE
                                                                   11
 9044441-9046979     AT1G26160.1: metal-dependent phosphohydrolase 12

Event 2
 15139933-15142292 AT1G40105.1: CACTA TE                               1
 15151216-15154824 AT1G40107.1: CACTA TE                               2

Event 3
 15313132-15316914 AT1G40143.1: GYPSY TE                               1
 15378555-15384011 AT1G40136.1: GYPSY TE                               2

Event 4
 17247859-17252452   AT1G46552.1: COPIA retrotransposon                1
 17252952-17253903   AT1G46554.1: other RNA                            2
 17255760-17261332   AT1G46624.1: GYPSY TE                             3
 17261860-17264183   AT1G46696.1: unknown protein                      4
 17265701-17266536   AT1G46768.1: DREB ERF/AP2 transcription factor    5

Event 5              Chromosome 2
 1871-2111           AT2G01008.1: other RNA                           1
 3706-5513           AT2G01010.1: rRNA; 18SrRNA                       2
 5782-5945           AT2G01020.1: rRNA; 5SrRNA                        3
 6571-6672           AT2G01021.1: Unknown protein                     4
 9648-9767           AT2G01023.1: Unknown protein                     5
 10478-12861         AT2G01022.1: GYPSY TE                            6
 14395-16377         AT2G01024.1: GYPSY TE                            7
 17624-22540         AT2G01026.1: GYPSY TE                            8
 23971-26923         AT2G01028.1: GYPSY TE                            9
 28465-38652         AT2G01029.1: GYPSY TE                          10
 39519-40358         AT2G01031.1: GYPSY TE                          11
 43427-48350         AT2G01034.1: GYPSY TE                          12
 58705-64872         AT2G01037.1: GYPSY TE                          13
 65436-67139         AT2G01040.1: transposable element gene-disease resistance protein  
                                                                    14

Event 6
 8971712-8974485     AT2G20840.1: secretory carrier membrane protein (SCAMP) family protein; FUNCT
                                                                         1
 8975348-8979379     AT2G20850.1: strubbelig receptor family 1 (SRF1); FUNCTIONS IN: kinase activity
                                                                         2
 8979579-8981226     AT2G20860.1: LIP1,Lipoic acid synthase,             3
 8981988-8982712     AT2G20870.1: cell wall protein precursor, putative; FUNCTIONS IN: molecular_fun
                                                                         4
 8983074-8983612   AT2G20875.1: EPIDERMAL PATTERNING FACTOR 1 (EPF1); FUNCTIONS IN: molecu
                                                                       5
 8985973-8987263   AT2G20880.1: AP2 domain-containing transcription factor, putative; FUNCTIONS 
                                                                       6
 8987666-8989416   AT2G20890.1: Chloroplast-localized Thylakoid formation1 gene product involved in
                                                                       7
 8989275-8993114   AT2G20900.1: diacylglycerol kinase, putative; FUNCTIONS IN: diacylglycerol kina
                                                                       8
 8989275-8992985   AT2G20900.4: diacylglycerol kinase, putative; FUNCTIONS IN: diacylglycerol kina
                                                                       9
 8989595-8992932   AT2G20900.2: diacylglycerol kinase, putative; FUNCTIONS IN: diacylglycerol kina
                                                                      10
 8989595-8993114   AT2G20900.3: diacylglycerol kinase, putative; FUNCTIONS IN: diacylglycerol kina
                                                                      11
 8994148-8996804   AT2G20910.1: pseudogene, vacuolar ATP synthase subunit B, blastp match of 94
                                                                      12
 8998686-8999932   AT2G20920.1: unknown protein                       13
 9000025-9000228   AT2G20921.1: Unknown protein                       14
 9000616-9001737   AT2G20930.1: Unknown protein                       15
 9002032-9002701   AT2G20940.1: unknown protein                       16
 9003135-9005938   AT2G20950.1: EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 grow
                                                                      17
 9003135-9005938   AT2G20950.2: EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 grow
                                                                      18
 9003139-9005938   AT2G20950.3: EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 grow
                                                                      19
 9003139-9005938   AT2G20950.4: EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 grow
                                                                      20
 9006648-9009763   AT2G20960.1: pEARLI4; FUNCTIONS IN: molecular_function unknown; INVOLVED 
                                                                      21
 9009867-9011067   AT2G20970.1: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                      22
 9009867-9011067   AT2G20970.2: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                      23
 9011389-9013931   AT2G20980.1: Similar to MCM10, which in other organism was shown to be involv
                                                                      24
 9014562-9018097   AT2G20990.1: Encodes a plasma membrane localized protein with similarity to syn
                                                                      25
 9018578-9019036                 TIGR MIPS
                    AAAAAAT2G20993                                    26
 9019506-9020219   AT2G21000.1: transposable element gene; copia-like retrotransposon family, has 
                                                                      27
 9020944-9021870   AT2G21010.1: C2 domain-containing protein. Possible pseudogene of AT2G20990
                                                                      28
 9022778-9024211   AT2G21020.1: pseudogene, major intrinsic protein (MIP) family, contains Pfam pro
                                                                      29
 9024536-9025578   AT2G21030.1: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolog
                                                                      30
 9026157-9027310   AT2G21040.1: C2 domain-containing protein. Possible pseudogene of AT2G20990
                                                                      31
 9027852-9029020   AT2G21045.1: INVOLVED IN: aging; EXPRESSED IN: hypocotyl, root; CONTAINS I
                                                                      32
 9034090-9036636   AT2G21050.1: amino acid permease, putative; FUNCTIONS IN: amino acid transm
                                                                      33
 9036793-9037650   AT2G21060.1: glycine-rich protein (AtGRP2b)        34
 9040863-9043528   AT2G21070.1: This gene is predicted to an encode a nuclear-localized protein tha
                                                                      35
 9040863-9043525   AT2G21070.2: This gene is predicted to an encode a protein that is involved in re
                                                                      36
 9043699-9045389   AT2G21080.1: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                      37
 9045516-9047579   AT2G21090.1: pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN
                                                                      38
 9048131-9049404   AT2G21100.1: disease resistance-responsive protein-related / dirigent protein-re
                                                                      39
 9050290-9050850   AT2G21110.1: disease resistance-responsive family protein; FUNCTIONS IN: mole
                                                                      40
 9051748-9054613                 TIGR MIPS
                    AAAAAAT2G21120                                    41
 9055398-9056232   AT2G21130.1: peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase
                                                                      42
 9060625-9062091   AT2G21140.1: Proline-rich protein expressed in expanding leaves, stems, flowers,
                                                                      43
 9065338-9068093   AT2G21150.1: XAP5 family protein involved in light regulation of the circadian clo
                                                                      44
 9068318-9070431   AT2G21160.1: translocon-associated protein alpha (TRAP alpha) family protein; I
                                                                      45
 9068318-9070413   AT2G21160.2: translocon-associated protein alpha (TRAP alpha) family protein; I
                                                                      46
 9070754-9073233   AT2G21170.1: Encodes triosephosphate isomerase.47
 9070754-9073233   AT2G21170.2: Encodes triosephosphate isomerase.48
 9073535-9073752   AT2G21172.1: Pseudogene of AT5G16486               49
 9074660-9075380   AT2G21180.1: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                      50
 9076437-9077048   AT2G21185.1: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                      51
 9076533-9077048   AT2G21187.1: Potential natural antisense gene, locus overlaps with AT2G21185
                                                                      52
 9076590-9077217   AT2G21187.2: Potential natural antisense gene, locus overlaps with AT2G21185
                                                                      53
 9079042-9079538   AT2G21188.1: Unknown gene                          54
 9080865-9082904   AT2G21190.1: ER lumen protein retaining receptor family protein; FUNCTIONS IN:
                                                                      55
 9083165-9083882   AT2G21195.1: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                      56
 9083165-9083882     AT2G21195.3: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                       57
 9083190-9083909     AT2G21195.2: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                       58
 9083906-9084375     AT2G21200.1: auxin-responsive protein, putative; FUNCTIONS IN: molecular_func
                                                                       59
 9085210-9085909     AT2G21210.1: auxin-regulated protein whose expression is downregulated in resp
                                                                       60
 9089326-9089813     AT2G21220.1: auxin-responsive protein, putative; FUNCTIONS IN: calmodulin bind
                                                                       61
 9093624-9096347     AT2G21230.1: bZIP family transcription factor; FUNCTIONS IN: transcription facto
                                                                       62
 9093624-9096347     AT2G21230.3: bZIP family transcription factor; FUNCTIONS IN: transcription facto
                                                                       63
 9094332-9096347     AT2G21230.2: bZIP family transcription factor; FUNCTIONS IN: transcription facto
                                                                       64
 9096592-9098767     AT2G21235.1: bZIP protein-related; FUNCTIONS IN: transcription factor activity;
                                                                       65
 9100536-9101215     AT2G21237.1: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                       66
 9101313-9103046     AT2G21240.2: BASIC PENTACYSTEINE 4 (BPC4); FUNCTIONS IN: transcription fac
                                                                       67
 9101316-9103050     AT2G21240.1: BASIC PENTACYSTEINE 4 (BPC4); FUNCTIONS IN: transcription fac
                                                                       68
 9103181-9105187     AT2G21250.2: mannose 6-phosphate reductase (NADPH-dependent), putative; F
                                                                       69
 9103207-9105187     AT2G21250.1: mannose 6-phosphate reductase (NADPH-dependent), putative; F
                                                                       70
 9105583-9107380     AT2G21260.1: mannose 6-phosphate reductase (NADPH-dependent), putative; F
                                                                       71
 9107546-9110261     AT2G21270.1: ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: m
                                                                       72
 9107566-9110261     AT2G21270.3: ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: m
                                                                       73
 9107619-9110261     AT2G21270.2: ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: m
                                                                       74
 9110313-9112707     AT2G21280.1: A nuclear-encoded, plastid-targeted protein (AtSulA) whose overe
                                                                       75
 9112856-9113330     AT2G21290.1: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                       76
 9114154-9118687     AT2G21300.2: kinesin motor family protein; FUNCTIONS IN: microtubule motor act
                                                                       77
 9114218-9119946     AT2G21300.1: kinesin motor family protein; FUNCTIONS IN: microtubule motor act
                                                                       78
 9122622-9125212     AT2G21310.1: transposable element gene; copia-like retrotransposon family, has 
                                                                       79
 9126263-9127843     AT2G21320.1: zinc finger (B-box type) family protein; FUNCTIONS IN: transcriptio
                                                                       80
 9128147-9130212     AT2G21330.3: fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose
                                                                       81
 9128147-9130240     AT2G21330.2: fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose
                                                                       82
 9128151-9130240     AT2G21330.1: fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose
                                                                       83
 9132555-9136459     AT2G21340.1: antiporter/ drug transporter; FUNCTIONS IN: drug transporter acti
                                                                       84
 9132557-9136459     AT2G21340.2: antiporter/ drug transporter; FUNCTIONS IN: drug transporter acti
                                                                       85
 9136451-9137267     AT2G21350.1: RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological
                                                                       86
 9137356-9137427     AT2G21360.1: pre-tRNA; tRNA-Pro (anticodon: CGG)  87
 9137454-9140081     AT2G21370.2: Although this gene has a sequence similar to xylulose kinases, sev
                                                                       88
 9137473-9140065     AT2G21370.1: Although this gene has a sequence similar to xylulose kinases, sev
                                                                       89
                                                                       73
Event 7
 13752584-13756853   AT2G32400.1: Glr5                                  1
 13757593-13761077   AT2G32410.1: AXR1-LIKE (AXL); FUNCTIONS IN: binding, catalytic activity; INVO
                                                                        2
 13757593-13761077   AT2G32410.2: AXR1-LIKE (AXL); FUNCTIONS IN: binding, catalytic activity; INVO
                                                                        3
 13761137-13765456   AT2G32415.1: 3'-5' exonuclease/ nucleic acid binding; FUNCTIONS IN: 3'-5' exon
                                                                        4
 13771296-13774502   AT2G32430.1: galactosyltransferase family protein; FUNCTIONS IN: transferase a
                                                                        5
 13775570-13778002   AT2G32440.1: ent-kaurenoic acid hydroxylase (KAO2) 6
 13778449-13781258   AT2G32450.1: calcium-binding EF hand family protein; FUNCTIONS IN: binding, zi
                                                                        7
 13782208-13784471   AT2G32460.1: Member of the R2R3 factor gene family.8
 13782208-13784471   AT2G32460.2: Member of the R2R3 factor gene family.9
 13787172-13788894   AT2G32470.1: F-box family protein-related; FUNCTIONS IN: molecular_function u
                                                                       10
 13788517-13790073   AT2G32480.1: membrane-associated zinc metalloprotease, putative; FUNCTIONS
                                                                       11
 13788517-13790073   AT2G32480.2: membrane-associated zinc metalloprotease, putative; FUNCTIONS
                                                                       12
 13791887-13793177   AT2G32487.1: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                       13
 13794426-13797227   AT2G32500.1: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolog
                                                                       14
 13794633-13795213   AT2G32490.1: pseudogene of 3'-5' exonuclease domain-containing protein
                                                                       15
 13798821-13799939   AT2G32510.1: member of MEKK subfamily             16
 13805519-13807536   AT2G32520.1: dienelactone hydrolase family protein; FUNCTIONS IN: hydrolase a
                                                                       17
 13809216-13813570   AT2G32530.1: encodes a gene similar to cellulose synthase
                                                                          18
 13814686-13818289   AT2G32540.1: encodes a gene similar to cellulose synthase
                                                                          19
 13819379-13822839   AT2G32550.1: rcd1-like cell differentiation family protein; INVOLVED IN: multicellu
                                                                          20
 13824794-13826986   AT2G32560.1: F-box family protein; FUNCTIONS IN: molecular_function unknown;
                                                                          21
 13827663-13829317   AT2G32580.1: unknown protein; FUNCTIONS IN: molecular_function unknown; IN
                                                                          22
 13829420-13833209   AT2G32590.1: INVOLVED IN: mitosis, mitotic cell cycle; LOCATED IN: nucleus, ch
                                                                          23
 13833545-13835663   AT2G32600.1: hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: zin
                                                                          24
 13836234-13839513   AT2G32610.1: encodes a gene similar to cellulose synthase
                                                                          25
 13840744-13844324   AT2G32620.1: encodes a gene similar to cellulose synthase
                                                                          26
                                                                          83
Event 8
 3244557-3245159     AT2G07747.1: Maturase (MATR)                     1
 3246037-3246366     AT2G07776.2: unknown protein                     2
 3247234-3249357     AT2G07749.1: unknown protein                     3
 3249077-3249394     AT2G07812.1: unknown protein                     4
 3250757-3251545     AT2G07777.1: unknown protein                     5
 3251665-3252113     AT2G07671.1: H+-transporting two-sector ATPase 6
 3254777-3255370     AT2G07779.1: unknown protein                     7
 3255832-3255905     AT2G07743.1: pre-tRNA; tRNA-Asp                  8
 3257585-3258064     AT2G07672.1: unknown protein                     9
 3260447-3260769     AT2G07664.1: unknown protein                    10
 3262235-3262345     AT2G07684.1: unknown protein                    11
 3266578-3266898     AT2G07673.1: unknown protein                    12
 3268807-3268886     AT2G07745.1: pre-tRNA; tRNA-Tyr                 13
 3269151-3269906     AT2G07674.1: unknown protein                    14
 3270008-3270364     AT2G07751.1: NADH-ubiquinone oxidoreductase chain 3
                                                                     15
 3270410-3270787     AT2G07675.1: ribosomal protein S12              16
 3272149-3272518     AT2G07767.1: non-LTR retroelement reverse transcriptase
                                                                     17
 3272619-3272975     AT2G07676.1: unknown protein                    18
 3273584-3274154     AT2G07768.1: heme transporter                   19
 3275010-3275362     AT2G07769.1: COPIA TE                           20
 3276440-3276511     AT2G07746.1: pre-tRNA; tRNA-Gln (anticodon: TTG)21
 3278376-3280384     AT2G07677.1: auxin-responsive factor (ARF)      22
 3280863-3280936     AT2G07748.1: pre-tRNA; tRNA-Trp (anticodon: CCA)23
 3281097-3281834     AT2G07678.1: unknown protein                    24
 3283224-3283553     AT2G07669.1: unknown protein                    25
 3288572-3289016     AT2G07781.1: unknown protein                    26
 3289035-3289530     AT2G07679.1: ribosomal protein                  27
 3289734-3290190     AT2G07782.1: unknown protein                    28
 3290231-3291001     AT2G07681.1: cytochrome c biogenesis protein    29
 3290966-3291037     AT2G07778.1: pre-tRNA; tRNA-Ile (anticodon: AAT) 0
                                                                     3
 3292516-3297403     AT2G07682.1: GYPSY TE                           31
 3297896-3300043     AT2G07783.1: unknown protein                    32
 3300978-3301804     AT2G07772.1: unknown protein                    33
 3301883-3303367     AT2G07683.1: COPIA TE                           34
 3303244-3303315     AT2G07752.1: pre-tRNA; tRNA-Glu (anticodon: TTC)35
 3303354-3303428     AT2G07753.1: pre-tRNA; tRNA-Tyr (anticodon: GTA)36
 3303766-3304573     AT2G07774.1: unknown protein                    37
 3303785-3303822     AT2G07754.1: pre-tRNA; tRNA-Ser (anticodon: GCT)38
 3307942-3309231     AT2G07685.1: GYPSY TE                           39
 3309362-3311374     AT2G07686.1: GYPSY TE                           40
 3311654-3312651     AT2G07687.1: cytochrome c oxidase subunit       41
 3313598-3314901   AT2G07811.1: unknown protein                     42
 3317798-3318634   AT2G07784.1: Transposable element                43
 3328670-3328742   AT2G07755.1: pre-tRNA; tRNA-Met (anticodon: CAT) 44
 3331570-3332664   AT2G07688.1: Photosystem Q(B) protein            45
 3332678-3332759   AT2G07792.1: pre-tRNA; tRNA-Tyr (anticodon: GTA) 46
 3336109-3336753   AT2G07689.1: NADH-ubiquinone oxidoreductase      47
 3336948-3337336   AT2G07808.1: unknown protein                     48
 3339907-3340317   AT2G07691.1: unknown protein                     49
 3340706-3341544   AT2G07692.1: unknown protein                     50
 3341392-3342812   AT2G07693.1: COPIA TE                            51
 3344338-3345303   AT2G07694.1: COPIA TE                            52
 3346951-3347826   AT2G07695.1: cytochrome c oxidase subunit II     53
 3348114-3350018   AT2G07785.1: NADH-ubiquinone oxidoreductase      54
 3351050-3351881   AT2G07696.1: ribosomal protein S7 family protein 55
 3353251-3353862   AT2G07813.1: unknown protein                     56
 3354014-3357474   AT2G07697.1: non-LTR retrotransposon family (LINE)
                                                                    57
 3358035-3360974   AT2G07798.1: unknown protein                     58
 3361110-3361415   AT2G07826.1: unknown protein                     59
 3361474-3364127   AT2G07698.1: ATP synthase alpha chain            60
 3364539-3366284   AT2G07667.1: unknown protein                     61
 3368151-3369308   AT2G07699.1: ATPase                              62
 3369354-3369440   AT2G07793.1: pre-tRNA; tRNA-Ser (anticodon: TGA) 63
 3371832-3372152   AT2G07701.1: unknown protein                     64
 3372697-3373155   AT2G07702.1: unknown protein                     65
 3375516-3375878   AT2G07703.1: COPIA TE                            66
 3379162-3379885   AT2G07704.1: COPIA TE                            67
 3380744-3380944   AT2G07705.1: unknown protein                     68
 3381901-3384226   AT2G07706.1: unknown protein                     69
 3383404-3383477   AT2G07794.1: pre-tRNA; tRNA-Met (anticodon: CAT) 70
 3386292-3386768   AT2G07707.1: hydrogen ion transmembrane transporter
                                                                    71
 3386851-3388033   AT2G07708.1: unknown protein                     72
 3388454-3394516   AT2G07709.1: unknown protein                     73
 3397158-3399434   AT2G07711.1: unknown protein                     74
 3399657-3399912   AT2G07786.1: unknown protein                     75
 3400730-3402757   AT2G07712.1: unknown protein                     76
 3403717-3404046   AT2G07663.1: unknown protein                     77
 3407218-3407586   AT2G07713.1: unknown protein                     78
 3407671-3408506   AT2G07714.1: transcription factor-related        79
 3411180-3412103   AT2G07715.1: ribosomal protein L2                80
 3413955-3414838   AT2G07716.1: unknown protein                     81
 3418229-3424177   AT2G07717.1: NADH-ubiquinone oxidoreductase  82
 3426263-3427204   AT2G07718.1: cytochrome b,                       83
 3430672-3430992   AT2G07809.1: unknown protein                     84
 3432795-3433495   AT2G07719.1: unknown protein                     85
 3434482-3434994   AT2G07721.1: unknown protein                     86
 3438742-3439161   AT2G07722.1: unknown protein                     87
 3441921-3444238   AT2G07723.1: unknown protein                     88
 3444363-3444434   AT2G07756.1: pre-tRNA; tRNA-Gly (anticodon: GCC) 89
 3444434-3444736   AT2G07815.1: unknown protein                     90
 3446394-3446717   AT2G07724.1: unknown protein                     91
 3448314-3449059   AT2G07725.1: 60S ribosomal protein L5            92
 3448961-3449179   AT2G07726.1: unknown protein                     93
 3450578-3452044   AT2G07727.1: cytochrome b (MTCYB)               94
 3452977-3453063   AT2G07757.1: pre-tRNA; tRNA-Ser (anticodon: GGA)95
 3453686-3456127   AT2G07728.1: unknown protein                    96
 3457213-3457479   AT2G07820.1: unknown protein                    97
 3459265-3460129   AT2G07729.1: COPIA TE                           98
 3461922-3462035   AT2G07807.1: unknown protein                    99
 3462078-3462151   AT2G07758.1: pre-tRNA; tRNA-Met (anticodon: CAT)
                                                                  100
 3466756-3467061   AT2G07799.1: unknown protein                   101
 3467199-3468078   AT2G07731.1:  NADH-ubiquinone oxidoreductase  102
 3468168-3468774   AT2G07732.1: ribulose-bisphosphate carboxylase 103
 3470315-3471873   AT2G07733.1: NADH dehydrogenase subunit        104
 3472305-3473692   AT2G07734.1: ribosomal protein S4 (RPS4)       105
 3474401-3474598   AT2G07825.1: unknown protein                   106
 3474996-3476845   AT2G07827.1: unknown protein                   107
 3474996-3476845   AT2G07827.2: unknown protein                   108
 3476156-3476278   AT2G07830.1: unknown protein                   109
 3476928-3478704   AT2G07787.1: unknown protein                   110
 3479612-3480000   AT2G07735.1: COPIA TE                          111
 3480151-3480633   AT2G07736.1: COPIA TE                          112
 3481085-3482066   AT2G07737.1: transposable element gene         113
 3483318-3484062   AT2G07775.1: unknown protein                   114
 3484830-3489421   AT2G07806.1: unknown protein                   115
 3484830-3489421   AT2G07806.2: unknown protein                   116
 3492339-3492786   AT2G07738.1: unknown protein                   117
 3493292-3493621   AT2G07795.1: unknown protein                   118
 3494382-3494419   AT2G07759.1: pre-tRNA; tRNA-Ser (anticodon: GCT)
                                                                  119
 3494776-3494850   AT2G07761.1: pre-tRNA; tRNA-Tyr (anticodon: GTA)
                                                                  120
 3495012-3495086   AT2G07762.1: pre-tRNA; tRNA-Pro (anticodon: TGG)
                                                                  121
 3495442-3495512   AT2G07763.1: pre-tRNA; tRNA-Cys (anticodon: GCA)
                                                                  122
 3495511-3496110   AT2G07739.1: unknown protein                   123
 3496440-3496511   AT2G07764.1: pre-tRNA; tRNA-Asn (anticodon: GTT)
                                                                  124
 3497358-3497440   AT2G07765.1: pre-tRNA; tRNA-Tyr (anticodon: GTA)
                                                                  125
 3501814-3501972   AT2G07835.1: unknown protein                   126
 3502319-3503476   AT2G07741.1: ATPase subunit 6                  127
 3503522-3503608   AT2G07766.1: pre-tRNA; tRNA-Ser (anticodon: TGA)
                                                                  128
                                                                  148
Event 9            Chromosome 4
 319061-320948     AT3G01930.1: nodulin family protein;             1
 319061-321560     AT3G01930.2: nodulin family protein;             2
 322831-323053     AT3G01940.1: unknown protein;                    3
 323977-324365     AT3G01950.1: unknown protein;                    4
 324581-325087     AT3G01960.1: unknown protein;                    5
 325181-325351     AT3G01961.1: unknown protein;                    6
                                                                  154
Event 10           Chromosome 4
1944378-1950431    AT4G04050    Gypsy-like                          1

1951542-1954608    AT4G04070     transposable element                 2

Event 11           Chromosome 5
332337-334470      AT5G01850.1: LRR-Kinase                            1
 335630-336277     AT5G01860.1: zinc finger (C2H2 type) family protein; 
                                                                      2
 337177-337820   AT5G01870.1: PR (pathogenesis-related)            3
 338899-340253   AT5G01880.1: zinc finger (C3HC4-type RING finger) protein
                                                                   4
 339838-340266   AT5G01881.1: unknown protein;                     5
 341543-345127   AT5G01890.1: LRR-Kinase                           6

                               Total genes 292
16/22
Physical location    At number Gene Identity
Event 1              Chromosome 1
 8766060-8767096     AT1G24792.1:pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase fam
                                                                            1
 8767562-8769438     AT1G24793.1:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
                                                                            2
 8767564-8769399     AT1G24793.2:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                            3
 8769660-8771251     AT1G24800.1:Cyclin-like F-box                          4
 8771766-8773535     AT1G24807.1:anthranilate synthase beta subunit, glutamine metabolic process,
                                                                            5
 8774997-8777882     AT1G24822.1:unknown protein;                           6
 8775901-8778045     AT1G24825.1:Potential natural antisense gene,          7
 8775929-8777418     AT1G24825.4:Potential natural antisense gene,          8
 8775936-8778000     AT1G24825.2:Potential natural antisense gene,          9
 8775950-8777439     AT1G24825.3:Potential natural antisense gene,         10
 8778280-8779056     AT1G24851.1:unknown protein;                          11
 8780844-8781536     AT1G24879.1:pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase fam
                                                                           12
 8781961-8783775     AT1G24880.1:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                           13
 8784036-8785634     AT1G24881.1:Cyclin-like F-box                         14
 8785785-8787914     AT1G24909.1:anthranilate synthase beta subunit,       15
 8789376-8792080     AT1G24938.1:transposable element gene)                16
 8793821-8797942     AT1G24967.1:Mutator-like transposase family,          17
 8798483-8806360     AT1G25054.1:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                           18
 8798492-8806356     AT1G25054.2:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                           19
 8799520-8800410     AT1G24996.1:unknown protein;                          20
 8800808-8801584     AT1G25025.1:unknown protein;                          21
 8803300-8804091     AT1G25053.1:pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase fam
                                                                           22
 8806607-8808156     AT1G25055.1:Cyclin-like F-box                         23
 8808549-8810443     AT1G25083.1:anthranilate synthase beta subunit, glutamine metabolic process, 
                                                                           24
 8811905-8814788     AT1G25097.1:unknown protein;                          25
 8812811-8814450     AT1G25098.2:Potential natural antisense gene,         26
 8812822-8814342     AT1G25098.1:Potential natural antisense gene,         27
 8815186-8815962     AT1G25112.1:unknown protein;                          28
 8817678-8822533     AT1G25141.1:UDP-3-0-acyl N-acetylglucosamine deacetylase family protein / F-b
                                                                           29
 8822692-8824821     AT1G25155.1:anthranilate synthase beta subunit, putative; glutamine metabolic 
                                                                           30
 8827286-8829320     AT1G25175.1:other RNA                                 31
 8829564-8830340     AT1G25180.1:unknown protein                           32
 8831724-8832760     AT1G25209.1:pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase fam
                                                                           33
 8833245-8835112     AT1G25210.1:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                           34
 8833245-8835112     AT1G25210.2:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                           35
 8835386-8837007     AT1G25211.1:Cyclin-like F-box                         36
                                                                           24
Event 2
 21748675-21753246   AT1G58561.1:COPIA TE                                    1
 21767342-21769456   AT1G58643.1:ATP binding / inositol pentakisphosphate 2-kinase
                                                                             2
 21769762-21771229   AT1G58684.1:40S ribosomal protein S2                    3
 21771935-21773251   AT1G58725.1:GDSL-motif lipase                           4
 21774381-21776765   AT1G58766.1:unknown protein                             5
 21780185-21784314   AT1G58807.2:disease resistance protein (CC-NBS-LRR class), 
                                                                             6
 21780574-21784296   AT1G58807.1:disease resistance protein (CC-NBS-LRR class),
                                                                             7
 21784645-21786869   AT1G58808.1:Unknown gene                                8
 21791783-21797050   AT1G58848.1:ATP binding / protein                       9
 21791783-21796450                 ATP binding / protein 
                     ATP binding / protein                                 10
 21797094-21801662   AT1G58889.1:COPIA TE                                  11
 21803600-21805714   AT1G58936.1:ATP binding / inositol pentakisphosphate 2-kinase 
                                                                           12
 21806020-21807487   AT1G58983.1:40S ribosomal protein S2                  13
 21808193-21809509   AT1G59030.1:carboxylesterase/ hydrolase               14
 21810644-21813023   AT1G59077.1:unknown protein                           15
 21816443-21820572   AT1G59124.1:disease resistance protein (CC-NBS-LRR class)
                                                                           16
 21821024-21822548   AT1G59171.1:ATP binding / inositol pentakisphosphate 2-kinase
                                                                           17
 21821024-21822548   AT1G59171.2:ATP binding / inositol pentakisphosphate 2-kinase
                                                                           18
 21828033-21832708   AT1G59218.1:disease resistance protein (CC-NBS-LRR class)
                                                                           19
 21833352-21837779   AT1G59265.1:COPIA TE                                  20
 21839858-21841972   AT1G59312.1:ATP binding / inositol pentakisphosphate 2-kinase
                                                                           21
 21842304-21843745   AT1G59359.1:40S ribosomal protein S2                  22
 21844451-21845881   AT1G59406.1:GDSL-motif lipase                         23
 21846902-21853384   AT1G59453.1:transcription factor-related              24
                                                                           39
Event 3
 27413971-27415335   AT1G72850.1:disease resistance protein (TIR-NBS class), 1
 27416228-27420778   AT1G72860.1:disease resistance protein (TIR-NBS class), 2
 27416232-27418323   AT1G72855.1:Potential natural antisense gene            3
 27421023-27423184   AT1G72870.1:disease resistance protein (TIR-NBS class), 4
 27423385-27426140   AT1G72880.1:acid phosphatase survival protein SurE,     5
 27423385-27426135   AT1G72880.2:acid phosphatase survival protein SurE,     6
                                                                           43
Event 4              Chromosome 2
 2592442-2597780     AT2G06540.1:non-LTR retrotransposon family (LINE)       1
 2598222-2600326     AT2G06541.1:protein dimerization                        2
 2598222-2600326     AT2G06541.2:protein dimerization                        3
 2602742-2603484     AT2G06550.1:transposable element gene                   4
 2604195-2604832     AT2G06555.1:unknown protein                             5
 2611034-2616254     AT2G06560.1:non-LTR retrotransposon family (LINE)       6
 2617554-2619173     AT2G06562.1:other RNA                                   7
 2622603-2624902     AT2G06570.1:unknown protein                             8
 2625043-2628033     AT2G06580.1:non-LTR retrotransposon family (LINE)       9
 2633129-2635227     AT2G06590.1:CACTA TE                                  10
 2639598-2642549     AT2G06600.1:MUTATOR TE                                11
 2642998-2643729     AT2G06610.1:transposable element gene                 12
 2644421-2644906     AT2G06620.1:transposable element gene                 13
 2645688-2646383     AT2G06630.1:transposable element gene                 14
 2647083-2647769     AT2G06640.1:transposable element gene                 15
 2647991-2649453     AT2G06645.1:unknown protein                           16
 2649058-2652090     AT2G06650.1:non-LTR retrotransposon family (LINE)     17
 2656414-2657265     AT2G06660.1:Mariner-like transposase family           18
 2660527-2660715     AT2G06667.1:unknown protein                           19
 2661493-2663643     AT2G06670.1:CACTA TE                                  20
 2667277-2669811     AT2G06680.1:MUTATOR TE                                21
 2670235-2671237     AT2G06690.1:transposable element gene                 22
                                                                           53
Event 5              Chromome 2
 3244557-3245159     AT2G07747.1:Maturase (MATR)                             1
 3246037-3246366     AT2G07776.2:unknown protein                             2
 3247234-3249357     AT2G07749.1:unknown protein                             3
 3249077-3249394     AT2G07812.1:unknown protein                             4
 3250757-3251545     AT2G07777.1:unknown protein                             5
 3251665-3252113   AT2G07671.1:H+-transporting two-sector ATPase          6
 3254777-3255370   AT2G07779.1:unknown protein                            7
 3255832-3255905   AT2G07743.1:pre-tRNA; tRNA-Asp                         8
 3257585-3258064   AT2G07672.1:unknown protein                            9
 3260447-3260769   AT2G07664.1:unknown protein                          10
 3262235-3262345   AT2G07684.1:unknown protein                          11
 3266578-3266898   AT2G07673.1:unknown protein                          12
 3268807-3268886   AT2G07745.1:pre-tRNA; tRNA-Tyr                       13
 3269151-3269906   AT2G07674.1:unknown protein                          14
 3270008-3270364   AT2G07751.1:NADH-ubiquinone oxidoreductase chain 3 15
 3270410-3270787   AT2G07675.1:ribosomal protein S12                    16
 3272149-3272518   AT2G07767.1:non-LTR retroelement reverse transcriptase
                                                                        17
 3272619-3272975   AT2G07676.1:unknown protein                          18
 3273584-3274154   AT2G07768.1:heme transporter                         19
 3275010-3275362   AT2G07769.1:COPIA TE                                 20
 3276440-3276511   AT2G07746.1:pre-tRNA; tRNA-Gln (anticodon: TTG)      21
 3278376-3280384   AT2G07677.1:auxin-responsive factor (ARF)            22
 3280863-3280936   AT2G07748.1:pre-tRNA; tRNA-Trp (anticodon: CCA)      23
 3281097-3281834   AT2G07678.1:unknown protein                          24
 3283224-3283553   AT2G07669.1:unknown protein                          25
 3288572-3289016   AT2G07781.1:unknown protein                          26
 3289035-3289530   AT2G07679.1:ribosomal protein                        27
 3289734-3290190   AT2G07782.1:unknown protein                          28
 3290231-3291001   AT2G07681.1:cytochrome c biogenesis protein          29
 3290966-3291037   AT2G07778.1:pre-tRNA; tRNA-Ile (anticodon: AAT)      30
 3292516-3297403   AT2G07682.1:GYPSY TE                                 31
 3297896-3300043   AT2G07783.1:unknown protein                          32
 3300978-3301804   AT2G07772.1:unknown protein                          33
 3301883-3303367   AT2G07683.1:COPIA TE                                 34
 3303244-3303315   AT2G07752.1:pre-tRNA; tRNA-Glu (anticodon: TTC)      35
 3303354-3303428   AT2G07753.1:pre-tRNA; tRNA-Tyr (anticodon: GTA)      36
 3303766-3304573   AT2G07774.1:unknown protein                          37
 3303785-3303822   AT2G07754.1:pre-tRNA; tRNA-Ser (anticodon: GCT)      38
 3307942-3309231   AT2G07685.1:GYPSY TE                                 39
 3309362-3311374   AT2G07686.1:GYPSY TE                                 40
 3311654-3312651   AT2G07687.1:cytochrome c oxidase subunit             41
 3313598-3314901   AT2G07811.1:unknown protein                          42
 3317798-3318634   AT2G07784.1:Transposable element                     43
 3328670-3328742   AT2G07755.1:pre-tRNA; tRNA-Met (anticodon: CAT)      44
 3331570-3332664   AT2G07688.1:Photosystem Q(B) protein                 45
 3332678-3332759   AT2G07792.1:pre-tRNA; tRNA-Tyr (anticodon: GTA)      46
 3336109-3336753   AT2G07689.1:NADH-ubiquinone oxidoreductase           47
 3336948-3337336   AT2G07808.1:unknown protein                          48
 3339907-3340317   AT2G07691.1:unknown protein                          49
 3340706-3341544   AT2G07692.1:unknown protein                          50
 3341392-3342812   AT2G07693.1:COPIA TE                                 51
 3344338-3345303   AT2G07694.1:COPIA TE                                 52
 3346951-3347826   AT2G07695.1:cytochrome c oxidase subunit II          53
 3348114-3350018   AT2G07785.1:NADH-ubiquinone oxidoreductase           54
 3351050-3351881   AT2G07696.1:ribosomal protein S7 family protein      55
 3353251-3353862   AT2G07813.1:unknown protein                          56
 3354014-3357474   AT2G07697.1:non-LTR retrotransposon family (LINE)    57
 3358035-3360974   AT2G07798.1:unknown protein                           58
 3361110-3361415   AT2G07826.1:unknown protein                           59
 3361474-3364127   AT2G07698.1:ATP synthase alpha chain                  60
 3364539-3366284   AT2G07667.1:unknown protein                           61
 3368151-3369308   AT2G07699.1:ATPase                                    62
 3369354-3369440   AT2G07793.1:pre-tRNA; tRNA-Ser (anticodon: TGA)       63
 3371832-3372152   AT2G07701.1:unknown protein                           64
 3372697-3373155   AT2G07702.1:unknown protein                           65
 3375516-3375878   AT2G07703.1:COPIA TE                                  66
 3379162-3379885   AT2G07704.1:COPIA TE                                  67
 3380744-3380944   AT2G07705.1:unknown protein                           68
 3381901-3384226   AT2G07706.1:unknown protein                           69
 3383404-3383477   AT2G07794.1:pre-tRNA; tRNA-Met (anticodon: CAT)       70
 3386292-3386768   AT2G07707.1:hydrogen ion transmembrane transporter    71
 3386851-3388033   AT2G07708.1:unknown protein                           72
 3388454-3394516   AT2G07709.1:unknown protein                           73
 3397158-3399434   AT2G07711.1:unknown protein                           74
 3399657-3399912   AT2G07786.1:unknown protein                           75
 3400730-3402757   AT2G07712.1:unknown protein                           76
 3403717-3404046   AT2G07663.1:unknown protein                           77
 3407218-3407586   AT2G07713.1:unknown protein                           78
 3407671-3408506   AT2G07714.1:transcription factor-related              79
 3411180-3412103   AT2G07715.1:ribosomal protein L2                      80
 3413955-3414838   AT2G07716.1:unknown protein                           81
 3418229-3424177   AT2G07717.1:NADH-ubiquinone oxidoreductase            82
 3426263-3427204   AT2G07718.1:cytochrome b,                             83
 3430672-3430992   AT2G07809.1:unknown protein                           84
 3432795-3433495   AT2G07719.1:unknown protein                           85
 3434482-3434994   AT2G07721.1:unknown protein                           86
 3438742-3439161   AT2G07722.1:unknown protein                           87
 3441921-3444238   AT2G07723.1:unknown protein                           88
 3444363-3444434   AT2G07756.1:pre-tRNA; tRNA-Gly (anticodon: GCC)       89
 3444434-3444736   AT2G07815.1:unknown protein                           90
 3446394-3446717   AT2G07724.1:unknown protein                           91
 3448314-3449059   AT2G07725.1:60S ribosomal protein L5                  92
 3448961-3449179   AT2G07726.1:unknown protein                           93
 3450578-3452044   AT2G07727.1:cytochrome b (MTCYB)                      94
 3452977-3453063   AT2G07757.1:pre-tRNA; tRNA-Ser (anticodon: GGA)       95
 3453686-3456127   AT2G07728.1:unknown protein                           96
 3457213-3457479   AT2G07820.1:unknown protein                           97
 3459265-3460129   AT2G07729.1:COPIA TE                                  98
 3461922-3462035   AT2G07807.1:unknown protein                           99
 3462078-3462151   AT2G07758.1:pre-tRNA; tRNA-Met (anticodon: CAT)      100
 3466756-3467061   AT2G07799.1:unknown protein                          101
 3467199-3468078   AT2G07731.1: NADH-ubiquinone oxidoreductase          102
 3468168-3468774   AT2G07732.1:ribulose-bisphosphate carboxylase        103
 3470315-3471873   AT2G07733.1:NADH dehydrogenase subunit               104
 3472305-3473692   AT2G07734.1:ribosomal protein S4 (RPS4)              105
 3474401-3474598   AT2G07825.1:unknown protein                          106
 3474996-3476845   AT2G07827.1:unknown protein                          107
 3474996-3476845   AT2G07827.2:unknown protein                          108
 3476156-3476278   AT2G07830.1:unknown protein                          109
 3476928-3478704     AT2G07787.1:unknown protein                         110
 3479612-3480000     AT2G07735.1:COPIA TE                                111
 3480151-3480633     AT2G07736.1:COPIA TE                                112
 3481085-3482066     AT2G07737.1:transposable element gene               113
 3483318-3484062     AT2G07775.1:unknown protein                         114
 3484830-3489421     AT2G07806.1:unknown protein                         115
 3484830-3489421     AT2G07806.2:unknown protein                         116
 3492339-3492786     AT2G07738.1:unknown protein                         117
 3493292-3493621     AT2G07795.1:unknown protein                         118
 3494382-3494419     AT2G07759.1:pre-tRNA; tRNA-Ser (anticodon: GCT)     119
 3494776-3494850     AT2G07761.1:pre-tRNA; tRNA-Tyr (anticodon: GTA)     120
 3495012-3495086     AT2G07762.1:pre-tRNA; tRNA-Pro (anticodon: TGG)     121
 3495442-3495512     AT2G07763.1:pre-tRNA; tRNA-Cys (anticodon: GCA)     122
 3495511-3496110     AT2G07739.1:unknown protein                         123
 3496440-3496511     AT2G07764.1:pre-tRNA; tRNA-Asn (anticodon: GTT)     124
 3497358-3497440     AT2G07765.1:pre-tRNA; tRNA-Tyr (anticodon: GTA)     125
 3501814-3501972     AT2G07835.1:unknown protein                         126
 3502319-3503476     AT2G07741.1:ATPase subunit 6                        127
 3503522-3503608     AT2G07766.1:pre-tRNA; tRNA-Ser (anticodon: TGA)     128
                                                                         118
Event 6              Chromosome 2
 7598985-7602121     AT2G17480 resistance locus o (MLO) protein            1
7606757-7609261      AT2G17490 TE                                          2
7606759-7609261      AT2G17500.1 Auxin efflux protein                      3
 7606784-7609278     AT2G17500.2 Auxin efflux protein                      4
 7606911-7609278     AT2G17500.4 Auxin efflux protein                      5
 7609236-7616000     AT2G17510.1:Embryo defective 2763                     6
                                                                         121
Event 7              Chromosome 2
 12455055-12459541   AT2G28990.1:leucine-rich repeat protein kinase        1
 12460781-12465037   AT2G29000.1:leucine-rich repeat protein kinase        2
 12465764-12469464   AT2G29010.1:leucine-rich repeat protein kinase        3
                                                                         124
Event 8              Chromosome 3
12667227-12667370    AT3G31051.1:unknown protein                          1
 12667704-12667826   AT3G31068.1:unknown protein                          2
 12670276-12670499   AT3G31161.1:pseudogene, hypothetical protein         3
 12674427-12674618   AT3G31300.1:TE                                       4
 12677228-12678717   AT3G31310.1:TE                                       5
 12679591-12680669   AT3G31312.1:GYPSY TE                                 6
 12681684-12683179   AT3G31314.1:CACTA TE                                 7
 12685821-12691103   AT3G31317.1:non-LTR retrotransposon family           8
 12694627-12696002   AT3G31320.1:TE                                       9
 12697412-12697778   AT3G31330.1:TE                                      10
 12698079-12700757   AT3G31340.1:GYPSY TE                                11
 12702587-12703222   AT3G31350.1:unknown protein                         12
 12704091-12704807   AT3G31355.1:transposable element gene; pseudogene, hypothetical protein, simi
                                                                         13
 12708257-12711435   AT3G31356.1:GYPSY TE                                14
 12713010-12713628   AT3G31357.1:transposable element gene; pseudogene, hypothetical protein, simi
                                                                         15
 12713992-12716114   AT3G31358.1:GYPSY TE                                16
 12716833-12722775   AT3G31359.1:GYPSY TE                                17
 12723412-12724422   AT3G31360.1:GYPSY TE                                18
 12725745-12729587   AT3G31365.1:helicase TE                               19
 12735171-12737948   AT3G31367.1:GYPSY TE                                  20
 12739412-12740362   AT3G31370.1:transposable element gene                 21
 12742861-12745393   AT3G31373.1:transposable element gene-replication protein
                                                                           22
 12745879-12747374   AT3G31374.1:GYPSY TE                                  23
 12748365-12752403   AT3G31375.1:GYPSY TE                                  24
 12753386-12754761   AT3G31377.1:transposable element gene putative replication protein A1
                                                                           25
 12758024-12758958   AT3G31380.1:COPIA TE                                  26
 12760805-12762223   AT3G31390.1:GYPSY TE                                  27
 12762661-12766244   AT3G31395.1:non-LTR retrotransposon family            28
 12768984-12769481   AT3G31400.1:unknown protein                           29
 12770519-12770650   AT3G31401.1:unknown protein                           30
 12770931-12773539   AT3G31402.1:unknown protein                           31
 12770931-12773539   AT3G31402.2:unknown protein                           32
 12776573-12778649   AT3G31403.1:MUTATOR TE                                33
 12779538-12780473   AT3G31406.1:TE                                        34
 12780479-12783581   AT3G31410.1:TE                                        35
 12784200-12784675   AT3G31415.1:terpene synthase/cyclase family protei    36
 12784676-12786759   AT3G31425.1:putative (+)-delta-cadinene synthase      37
 12787914-12792017   AT3G31420.1:non-LTR retrotransposon family            38
 12792940-12795066   AT3G31422.1:hAT-like transposase family               39
 12795861-12796871   AT3G31430.1:unknown protein                           40
 12800324-12806091   AT3G31440.1:helicase TE                               41
 12803911-12804796   AT3G31442.1:Sadhu non-coding retrotransposon family 42
 12810851-12813187   AT3G31450.1:MUTATOR TE                                43
 12814911-12815570   AT3G31460.1:Retroelement pol polyprotein              44
 12818516-12820597   AT3G31470.1:non-LTR retrotransposon family            45
 12820631-12821686   AT3G31475.1:non-LTR retrotransposon family            46
 12825337-12827347   AT3G31490.1:GYPSY TE                                  47
 12828688-12830731   AT3G31500.1:GYPSY TE                                  48
 12833343-12835647   AT3G31510.1:unknown protein                           49
 12838149-12842889   AT3G31530.1:GYPSY TE                                  50
 12843392-12845748   AT3G31540.1:TE                                        51
 12852502-12859789   AT3G31630.1:GYPSY TE                                  52
 12861831-12864017   AT3G31720.1:non-LTR retrotransposon family            53
 12868798-12870124   AT3G31810.1:TE                                        54
 12875071-12877422   AT3G31900.1:unknown protein                           55
 12879031-12879375   AT3G31902.1:MADS-box protein                          56
 12879906-12880236   AT3G31903.1:Transcription factor (fragment)           57
 12885376-12891812   AT3G31904.1:helicase TE                               58
 12892774-12895070   AT3G31905.1:TE pseudogene                             59
 12896942-12898508   AT3G31906.1:pseudogene, ATP-dependent CLPB protein 60
 12902409-12903522   AT3G31908.1:pseudogene, similar to aintegumenta-like protein
                                                                           61
 12906598-12907864   AT3G31909.1:MUTATOR TE                                62
 12907877-12910391   AT3G31910.1:unknown protein                           63
 12909851-12912291   AT3G31915.1:TE                                        64

 12920070-12926590   AT3G31920.1:CACTA TE                                  65
 12928342-12929220   AT3G31930.1:TE                                        66
 12933228-12938295   AT3G31935.1:GYPSY TE                                  67
 12940786-12941768   AT3G31940.1:TE                                        68
 12942324-12949134   AT3G31945.1:GYPSY TE                                  69
 12950113-12952593   AT3G31950.1:unknown protein                              70
 12954001-12954422   AT3G31955.1:TE                                           71
 12954903-12955983   AT3G31960.1:unknown protein                              72
 12962491-12967061   AT3G31970.1:GYPSY TE                                     73
 12972404-12976508   AT3G31980.1:TE                                           74
 12978898-12981090   AT3G31990.1:TE pseudogene                                75
 12981628-12982740   AT3G31993.1:CACTA TE                                     76
 12982726-12983028   AT3G31996.1:TE pseudogene                                77
 12984313-12987051   AT3G32000.1:GYPSY TE                                     78
 12988334-12990208   AT3G32010.1:GYPSY TE                                     79
 12992006-12992614   AT3G32020.2:TE pseudogene                                80
 12993299-12994435   AT3G32023.1:CACTA TE                                     81
 12994952-12998969   AT3G32021.1:CACTA TE                                     82
 13003010-13007712   AT3G32022.1:helicase TE                                  83
 13008566-13009829   AT3G32024.1:TE pseudogene                                84
 13010636-13011960   AT3G32026.1:TE pseudogene                                85
 13012603-13013955   AT3G32027.1:TE pseudogene                                86
 13014606-13016975   AT3G32028.1:TE pseudogene                                87
 13017167-13019596   AT3G32033.1:GYPSY TE                                     88
 13020879-13022411   AT3G32029.1:GYPSY TE                                     89
 13024557-13026492   AT3G32031.1:GYPSY TE                                     90
 13028679-13030475   AT3G32032.1:GYPSY TE                                     91
 13032458-13035348   AT3G32030.1:terpene synthase/cyclase family protein 92
 13035628-13036373   AT3G32035.1:non-LTR retrotransposon family               93
 13040231-13040344   AT3G32036.1:unknown protein                              94
 13047704-13049040   AT3G32040.1:geranylgeranyl pyrophosphate synthase 95
 13053130-13058318   AT3G32043.1:non-LTR retrotransposon family               96
 13061048-13062710   AT3G32047.1:electron carrier/ heme binding / iron ion binding / monooxygenase
                                                                              97
 13067626-13068582   AT3G32050.1:unknown protein                              98
 13069789-13069953   AT3G32052.1:unknown protein                              99
 13073033-13074690   AT3G32060.1:MUTATOR TE                                 100
 13075710-13076285   AT3G32070.1:transposable element gene; similar to unknown protein [Arabidopsis
                                                                            101
 13076748-13078338   AT3G32080.1:transposable element gene; similar to unknown protein [Arabidopsis
                                                                            102
 13078956-13079921   AT3G32090.1:transcription factor-related; FUNCTIONS IN: transcription factor ac
                                                                            103
 13080593-13088056   AT3G32091.1:GYPSY TE                                   104
 13088116-13091973   AT3G32092.1:GYPSY TE                                   105
 13092825-13093479   AT3G32093.1:transposable element gene; pseudogene, similar to Putative polypro
                                                                            106
 13094381-13095857   AT3G32095.1:transposable element gene; pseudogene, hypothetical protein
                                                                            107
 13096971-13097304   AT3G32100.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                            108
 13097952-13103951   AT3G32110.1:transposable element gene; non-LTR retrotransposon family (LINE)
                                                                            109
 13105076-13108692   AT3G32112.1:transposable element gene; copia-like retrotransposon family, has a
                                                                            110
 13109258-13113938   AT3G32115.1:transposable element gene; non-LTR retrotransposon family (LINE)
                                                                            111
 13116266-13118455   AT3G32116.1:GYPSY TE                                   112
 13119182-13121222   AT3G32118.1:transposable element gene; pseudogene, hypothetical protein, simi
                                                                            113
 13124466-13125316   AT3G32120.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                            114
 13127479-13128165   AT3G32130.1:FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologi
                                                                            115
 13134079-13136427   AT3G32135.1:MUTATOR TE                                 116
 13138221-13139009   AT3G32140.1:transposable element gene; similar to unknown protein [Arabidopsis
                                                                            117
                                                                            173
Event 9
16244952-16250205 AT3G44705.1:non-LTR retrotransposon family                1
 16251834-16253535 AT3G44710.1:unknown protein                              2
 16260205-16262484   AT3G44713.1:unknown protein                             3
 16263200-16263875   AT3G44716.1:unknown protein                             4
 16263200-16264261   AT3G44716.2:unknown protein                             5
 16264449-16264931   AT3G44717.1:unknown protein                             6
 16266111-16266314   AT3G44718.1:Plant thionin family protein                7
                                                                           178
Event 10             Chromosome 4
1695206-1697152      AT4g03795 TE GYPSY                                      1
1743791-1748332      AT4g03800 TE GYPSY                                      2
                                                                           180
Event 11
 5855176-5856327     AT4G09190.1:F-box family protein; FUNCTIONS IN: molecular_function unknown; 
                                                                             1
 5859257-5861803     AT4G09200.1:SPla/RYanodine receptor (SPRY) domain-containing protein; FUNCT
                                                                             2
 5862109-5864769     AT4G09205.1:transposable element gene; copia-like retrotransposon family, has a
                                                                             3
 5870289-5871160     AT4G09210.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                             4
 5872401-5872760     AT4G09220.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                             5
 5873202-5874506     AT4G09230.1:transposable element gene; pseudogene, hypothetical protein
                                                                             6

 5876578-5878978     AT4G09250.1:FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologi
                                                                             7
 5879363-5882074     AT4G09255.1:transposable element gene; copia-like retrotransposon family, has a
                                                                             8
 5887592-5888463     AT4G09260.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                             9
 5889703-5890062     AT4G09270.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                            10
 5890496-5891808     AT4G09280.1:transposable element gene; similar to Ulp1 protease family protein [
                                                                            11
 5893344-5894969     AT4G09290.1:transposable element gene; similar to Ulp1 protease family protein [
                                                                            12
 5898798-5901014     AT4G09300.1:FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologi
                                                                            13
 5902826-5905372     AT4G09310.1:SPla/RYanodine receptor (SPRY) domain-containing protein; FUNCT
                                                                            14
 5905647-5908853     AT4G09313.1:transposable element gene; copia-like retrotransposon family, has a
                                                                            15
 5914032-5916593     AT4G09316.1:transposable element gene; copia-like retrotransposon family, has a
                                                                            16
 5923400-5924532     AT4G09320.1:nucleoside diphosphate kinase type 1 (NDPK1) gene, complete
                                                                            17

Event 12
 13620977-13623934   AT4g27190    NBS-LRR                                    1
 13624728-13627237   AT4g27200    TE COPIA                                   2
 13627417-13631922   AT4g27210    TE COPIA                                   3
 13633953-13636712   AT4g27220    NBS-LRR                                    4
                                                                           194


Event 13             Chromosome 5
 11510033-11512009   AT5G31496.1:GYPSY TE                                    1
 11515442-11516644   AT5G31637.1:GYPSY TE                                    2
 11517598-11518965   AT5G31778.1:GYPSY TE                                    3
 11519920-11521244   AT5G31919.1:GYPSY TE                                    4
 11521176-11522261   AT5G31989.1:GYPSY TE                                    5
 11527891-11533149   AT5G32060.1:GYPSY TE                                    6
 11533469-11537215   AT5G30420.1:unknown protein                             7
 11541463-11543768   AT5G31412.1:protein dimerization;                       8
 11548174-11549679   AT5G31807.1:MUTATOR TE                                  9
 11551762-11552832   AT5G30440.1:CATCA TE                                   10
 11555408-11558380   AT5G31511.1:CATCA TE                                   11
 11559203-11561951   AT5G30450.1:CATCA TE                                   12
 11563124-11564305   AT5G30721.1:GYPSY TE                                   13
 11564677-11565897   AT5G30460.1:GYPSY TE                           14
 11566337-11566789   AT5G30648.1:GYPSY TE                           15
 11567516-11568304   AT5G30870.1:TE                                 16
 11569502-11572297   AT5G31092.1:GYPSY TE                           17
 11573252-11573608   AT5G31314.1:TE                                 18
 11575368-11575838   AT5G31536.1:TE                                 19
 11576745-11577128   AT5G31758.1:TE                                 20
 11578104-11580836   AT5G31980.1:GYPSY TE                           21
 11587319-11589681   AT5G30470.1:CATCA TE                           22
 11590737-11591989   AT5G30480.1:CATCA TE                           23
 11592943-11595226   AT5G30207.1:GYPSY TE                           24
 11596127-11610717   AT5G30269.1:COPIA TE                           25

Event 14             Chromosome 5
 15251024-15251314   AT5G38197.1:Protease inhibitor/seed storage      1
 15256276-15258755   AT5G38200.1:hydrolase                            2
 15261005-15265630   AT5G38210.1:serine/threonine protein kinase      3
                                 tandem duplicates                  209
                                 total genes                        400




                                                                    200
SA/M
Physical location   At number Gene Identity
Event 1             Chromosome 1
 8766060-8767096    AT1G24792.1:pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase fam
                                                                             1
 8767562-8769438    AT1G24793.1:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
                                                                             2
 8767564-8769399    AT1G24793.2:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                             3
 8769660-8771251    AT1G24800.1:Cyclin-like F-box                            4
 8771766-8773535    AT1G24807.1:anthranilate synthase beta subunit, glutamine metabolic process,
                                                                             5
 8774997-8777882    AT1G24822.1:unknown protein;                             6
 8775901-8778045    AT1G24825.1:Potential natural antisense gene,            7
 8775929-8777418    AT1G24825.4:Potential natural antisense gene,            8
 8775936-8778000    AT1G24825.2:Potential natural antisense gene,            9
 8775950-8777439    AT1G24825.3:Potential natural antisense gene,           10
 8778280-8779056    AT1G24851.1:unknown protein;                            11
 8780844-8781536    AT1G24879.1:pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase fam
                                                                            12
 8781961-8783775    AT1G24880.1:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                            13
 8784036-8785634    AT1G24881.1:Cyclin-like F-box                           14
 8785785-8787914    AT1G24909.1:anthranilate synthase beta subunit,         15
 8789376-8792080    AT1G24938.1:transposable element gene)                  16
 8793821-8797942    AT1G24967.1:Mutator-like transposase family,            17
 8798483-8806360    AT1G25054.1:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                            18
 8798492-8806356    AT1G25054.2:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                            19
 8799520-8800410    AT1G24996.1:unknown protein;                            20
 8800808-8801584    AT1G25025.1:unknown protein;                            21
 8803300-8804091    AT1G25053.1:pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase fam
                                                                            22
 8806607-8808156    AT1G25055.1:Cyclin-like F-box                           23
 8808549-8810443    AT1G25083.1:anthranilate synthase beta subunit, glutamine metabolic process, 
                                                                            24
 8811905-8814788    AT1G25097.1:unknown protein;                            25
 8812811-8814450    AT1G25098.2:Potential natural antisense gene,           26
 8812822-8814342    AT1G25098.1:Potential natural antisense gene,           27
 8815186-8815962    AT1G25112.1:unknown protein;                            28
 8817678-8822533    AT1G25141.1:UDP-3-0-acyl N-acetylglucosamine deacetylase family protein / F-b
                                                                            29
 8822692-8824821    AT1G25155.1:anthranilate synthase beta subunit, putative; glutamine metabolic p
                                                                            30
 8827286-8829320    AT1G25175.1:other RNA                                   31
 8829564-8830340    AT1G25180.1:unknown protein                             32
 8831724-8832760    AT1G25209.1:pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase fam
                                                                            33
 8833245-8835112    AT1G25210.1:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                            34
 8833245-8835112    AT1G25210.2:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; 
                                                                            35
 8835386-8837007    AT1G25211.1:Cyclin-like F-box                           36
                                                                            24
Event 2
 11479866-11482890 AT1G31970.1:STRESS RESPONSE SUPPRESSOR 1 (STRS1) 1
 11488016-11489287 AT1G31990.1:Unknown                              2
 11501674-11503237 AT1G31983.1:pseudogene, hypothetical protein     3
 11503576-11507662 AT1G31993.1:TE gypsy-like                        4
 11508285-11508909 AT1G32000.1:Unknown                              5
 11509341-11512040 AT1G32010.1:myosin heavy chain-related           6
 11512552-11513067 AT1G32020.1:F-box family protein                 7
 11514594-11515595 AT1G32030.1:DNA binding                          8
 11518418-11520070 AT1G32040.1:TE gypsy-like                        9
 11520689-11520876 AT1G32045.1:TE gypsy-like                       10
 11527728-11528207 AT1G32049.1:unknown pseudogene                  11
                                                                           26

Event 3
 21748675-21753246 AT1G58561.1:COPIA TE                                     1
 21767342-21769456 AT1G58643.1:ATP binding / inositol pentakisphosphate 2-kinase
                                                                            2
 21769762-21771229 AT1G58684.1:40S ribosomal protein S2                     3
 21771935-21773251 AT1G58725.1:GDSL-motif lipase                            4
 21774381-21776765 AT1G58766.1:unknown protein                              5
 21780185-21784314 AT1G58807.2:disease resistance protein (CC-NBS-LRR class), 
                                                                            6
 21780574-21784296 AT1G58807.1:disease resistance protein (CC-NBS-LRR class),
                                                                            7
 21784645-21786869 AT1G58808.1:Unknown gene                                 8
 21791783-21797050 AT1G58848.1:ATP binding / protein                        9
                                 ATP binding / protein 
 21791783-21796450 ATP binding / protein                                   10
 21797094-21801662 AT1G58889.1:COPIA TE                                    11
 21803600-21805714 AT1G58936.1:ATP binding / inositol pentakisphosphate 2-kinase 
                                                                           12
 21806020-21807487 AT1G58983.1:40S ribosomal protein S2                    13
 21808193-21809509 AT1G59030.1:carboxylesterase/ hydrolase                 14
 21810644-21813023 AT1G59077.1:unknown protein                             15
 21816443-21820572 AT1G59124.1:disease resistance protein (CC-NBS-LRR class)
                                                                           16
 21821024-21822548 AT1G59171.1:ATP binding / inositol pentakisphosphate 2-kinase
                                                                           17
 21821024-21822548 AT1G59171.2:ATP binding / inositol pentakisphosphate 2-kinase
                                                                           18
 21828033-21832708 AT1G59218.1:disease resistance protein (CC-NBS-LRR class)
                                                                           19
 21833352-21837779 AT1G59265.1:COPIA TE                                    20
 21839858-21841972 AT1G59312.1:ATP binding / inositol pentakisphosphate 2-kinase
                                                                           21
 21842304-21843745 AT1G59359.1:40S ribosomal protein S2                    22
 21844451-21845881 AT1G59406.1:GDSL-motif lipase                           23
 21846902-21853384 AT1G59453.1:transcription factor-related                24
                                                                           41
Event 4
 27413971-27415335 AT1G72850.1:disease resistance protein (TIR-NBS class), 1
 27416228-27420778 AT1G72860.1:disease resistance protein (TIR-NBS class), 2
 27416232-27418323 AT1G72855.1:Potential natural antisense gene             3
 27421023-27423184 AT1G72870.1:disease resistance protein (TIR-NBS class), 4
 27423385-27426140 AT1G72880.1:acid phosphatase survival protein SurE,      5
 27423385-27426135 AT1G72880.2:acid phosphatase survival protein SurE,      6
                                                                           45
Event 5            Chromosome 2
 2592442-2597780 AT2G06540.1:non-LTR retrotransposon family (LINE)          1
 2598222-2600326 AT2G06541.1:protein dimerization                           2
 2598222-2600326 AT2G06541.2:protein dimerization                           3
 2602742-2603484 AT2G06550.1:transposable element gene                      4
 2604195-2604832 AT2G06555.1:unknown protein                                5
 2611034-2616254 AT2G06560.1:non-LTR retrotransposon family (LINE)          6
 2617554-2619173 AT2G06562.1:other RNA                                      7
 2622603-2624902 AT2G06570.1:unknown protein                                8
 2625043-2628033 AT2G06580.1:non-LTR retrotransposon family (LINE)          9
 2633129-2635227 AT2G06590.1:CACTA TE                                      10
 2639598-2642549 AT2G06600.1:MUTATOR TE                                    11
 2642998-2643729 AT2G06610.1:transposable element gene                     12
 2644421-2644906 AT2G06620.1:transposable element gene                     13
 2645688-2646383 AT2G06630.1:transposable element gene                     14
 2647083-2647769 AT2G06640.1:transposable element gene                     15
 2647991-2649453   AT2G06645.1:unknown protein                           16
 2649058-2652090   AT2G06650.1:non-LTR retrotransposon family (LINE)     17
 2656414-2657265   AT2G06660.1:Mariner-like transposase family           18
 2660527-2660715   AT2G06667.1:unknown protein                           19
 2661493-2663643   AT2G06670.1:CACTA TE                                  20
 2667277-2669811   AT2G06680.1:MUTATOR TE                                21
 2670235-2671237   AT2G06690.1:transposable element gene                 22
                                                                         55
Event 6            Chromome 2
 3244557-3245159   AT2G07747.1:Maturase (MATR)                             1
 3246037-3246366   AT2G07776.2:unknown protein                             2
 3247234-3249357   AT2G07749.1:unknown protein                             3
 3249077-3249394   AT2G07812.1:unknown protein                             4
 3250757-3251545   AT2G07777.1:unknown protein                             5
 3251665-3252113   AT2G07671.1:H+-transporting two-sector ATPase           6
 3254777-3255370   AT2G07779.1:unknown protein                             7
 3255832-3255905   AT2G07743.1:pre-tRNA; tRNA-Asp                          8
 3257585-3258064   AT2G07672.1:unknown protein                             9
 3260447-3260769   AT2G07664.1:unknown protein                            10
 3262235-3262345   AT2G07684.1:unknown protein                            11
 3266578-3266898   AT2G07673.1:unknown protein                            12
 3268807-3268886   AT2G07745.1:pre-tRNA; tRNA-Tyr                         13
 3269151-3269906   AT2G07674.1:unknown protein                            14
 3270008-3270364   AT2G07751.1:NADH-ubiquinone oxidoreductase chain 3     15
 3270410-3270787   AT2G07675.1:ribosomal protein S12                      16
 3272149-3272518   AT2G07767.1:non-LTR retroelement reverse transcriptase 17
 3272619-3272975   AT2G07676.1:unknown protein                            18
 3273584-3274154   AT2G07768.1:heme transporter                           19
 3275010-3275362   AT2G07769.1:COPIA TE                                   20
 3276440-3276511   AT2G07746.1:pre-tRNA; tRNA-Gln (anticodon: TTG)        21
 3278376-3280384   AT2G07677.1:auxin-responsive factor (ARF)              22
 3280863-3280936   AT2G07748.1:pre-tRNA; tRNA-Trp (anticodon: CCA)        23
 3281097-3281834   AT2G07678.1:unknown protein                            24
 3283224-3283553   AT2G07669.1:unknown protein                            25
 3288572-3289016   AT2G07781.1:unknown protein                            26
 3289035-3289530   AT2G07679.1:ribosomal protein                          27
 3289734-3290190   AT2G07782.1:unknown protein                            28
 3290231-3291001   AT2G07681.1:cytochrome c biogenesis protein            29
 3290966-3291037   AT2G07778.1:pre-tRNA; tRNA-Ile (anticodon: AAT)        30
 3292516-3297403   AT2G07682.1:GYPSY TE                                   31
 3297896-3300043   AT2G07783.1:unknown protein                            32
 3300978-3301804   AT2G07772.1:unknown protein                            33
 3301883-3303367   AT2G07683.1:COPIA TE                                   34
 3303244-3303315   AT2G07752.1:pre-tRNA; tRNA-Glu (anticodon: TTC)        35
 3303354-3303428   AT2G07753.1:pre-tRNA; tRNA-Tyr (anticodon: GTA)        36
 3303766-3304573   AT2G07774.1:unknown protein                            37
 3303785-3303822   AT2G07754.1:pre-tRNA; tRNA-Ser (anticodon: GCT)        38
 3307942-3309231   AT2G07685.1:GYPSY TE                                   39
 3309362-3311374   AT2G07686.1:GYPSY TE                                   40
 3311654-3312651   AT2G07687.1:cytochrome c oxidase subunit               41
 3313598-3314901   AT2G07811.1:unknown protein                            42
 3317798-3318634   AT2G07784.1:Transposable element                       43
 3328670-3328742   AT2G07755.1:pre-tRNA; tRNA-Met (anticodon: CAT)      44
 3331570-3332664   AT2G07688.1:Photosystem Q(B) protein                 45
 3332678-3332759   AT2G07792.1:pre-tRNA; tRNA-Tyr (anticodon: GTA)      46
 3336109-3336753   AT2G07689.1:NADH-ubiquinone oxidoreductase           47
 3336948-3337336   AT2G07808.1:unknown protein                          48
 3339907-3340317   AT2G07691.1:unknown protein                          49
 3340706-3341544   AT2G07692.1:unknown protein                          50
 3341392-3342812   AT2G07693.1:COPIA TE                                 51
 3344338-3345303   AT2G07694.1:COPIA TE                                 52
 3346951-3347826   AT2G07695.1:cytochrome c oxidase subunit II          53
 3348114-3350018   AT2G07785.1:NADH-ubiquinone oxidoreductase           54
 3351050-3351881   AT2G07696.1:ribosomal protein S7 family protein      55
 3353251-3353862   AT2G07813.1:unknown protein                          56
 3354014-3357474   AT2G07697.1:non-LTR retrotransposon family (LINE)    57
 3358035-3360974   AT2G07798.1:unknown protein                          58
 3361110-3361415   AT2G07826.1:unknown protein                          59
 3361474-3364127   AT2G07698.1:ATP synthase alpha chain                 60
 3364539-3366284   AT2G07667.1:unknown protein                          61
 3368151-3369308   AT2G07699.1:ATPase                                   62
 3369354-3369440   AT2G07793.1:pre-tRNA; tRNA-Ser (anticodon: TGA)      63
 3371832-3372152   AT2G07701.1:unknown protein                          64
 3372697-3373155   AT2G07702.1:unknown protein                          65
 3375516-3375878   AT2G07703.1:COPIA TE                                 66
 3379162-3379885   AT2G07704.1:COPIA TE                                 67
 3380744-3380944   AT2G07705.1:unknown protein                          68
 3381901-3384226   AT2G07706.1:unknown protein                          69
 3383404-3383477   AT2G07794.1:pre-tRNA; tRNA-Met (anticodon: CAT)      70
 3386292-3386768   AT2G07707.1:hydrogen ion transmembrane transporter   71
 3386851-3388033   AT2G07708.1:unknown protein                          72
 3388454-3394516   AT2G07709.1:unknown protein                          73
 3397158-3399434   AT2G07711.1:unknown protein                          74
 3399657-3399912   AT2G07786.1:unknown protein                          75
 3400730-3402757   AT2G07712.1:unknown protein                          76
 3403717-3404046   AT2G07663.1:unknown protein                          77
 3407218-3407586   AT2G07713.1:unknown protein                          78
 3407671-3408506   AT2G07714.1:transcription factor-related             79
 3411180-3412103   AT2G07715.1:ribosomal protein L2                     80
 3413955-3414838   AT2G07716.1:unknown protein                          81
 3418229-3424177   AT2G07717.1:NADH-ubiquinone oxidoreductase           82
 3426263-3427204   AT2G07718.1:cytochrome b,                            83
 3430672-3430992   AT2G07809.1:unknown protein                          84
 3432795-3433495   AT2G07719.1:unknown protein                          85
 3434482-3434994   AT2G07721.1:unknown protein                          86
 3438742-3439161   AT2G07722.1:unknown protein                          87
 3441921-3444238   AT2G07723.1:unknown protein                          88
 3444363-3444434   AT2G07756.1:pre-tRNA; tRNA-Gly (anticodon: GCC)      89
 3444434-3444736   AT2G07815.1:unknown protein                          90
 3446394-3446717   AT2G07724.1:unknown protein                          91
 3448314-3449059   AT2G07725.1:60S ribosomal protein L5                 92
 3448961-3449179   AT2G07726.1:unknown protein                          93
 3450578-3452044   AT2G07727.1:cytochrome b (MTCYB)                     94
 3452977-3453063   AT2G07757.1:pre-tRNA; tRNA-Ser (anticodon: GGA)      95
 3453686-3456127    AT2G07728.1:unknown protein                        96
 3457213-3457479    AT2G07820.1:unknown protein                        97
 3459265-3460129    AT2G07729.1:COPIA TE                               98
 3461922-3462035    AT2G07807.1:unknown protein                        99
 3462078-3462151    AT2G07758.1:pre-tRNA; tRNA-Met (anticodon: CAT)   100
 3466756-3467061    AT2G07799.1:unknown protein                       101
 3467199-3468078    AT2G07731.1: NADH-ubiquinone oxidoreductase       102
 3468168-3468774    AT2G07732.1:ribulose-bisphosphate carboxylase     103
 3470315-3471873    AT2G07733.1:NADH dehydrogenase subunit            104
 3472305-3473692    AT2G07734.1:ribosomal protein S4 (RPS4)           105
 3474401-3474598    AT2G07825.1:unknown protein                       106
 3474996-3476845    AT2G07827.1:unknown protein                       107
 3474996-3476845    AT2G07827.2:unknown protein                       108
 3476156-3476278    AT2G07830.1:unknown protein                       109
 3476928-3478704    AT2G07787.1:unknown protein                       110
 3479612-3480000    AT2G07735.1:COPIA TE                              111
 3480151-3480633    AT2G07736.1:COPIA TE                              112
 3481085-3482066    AT2G07737.1:transposable element gene             113
 3483318-3484062    AT2G07775.1:unknown protein                       114
 3484830-3489421    AT2G07806.1:unknown protein                       115
 3484830-3489421    AT2G07806.2:unknown protein                       116
 3492339-3492786    AT2G07738.1:unknown protein                       117
 3493292-3493621    AT2G07795.1:unknown protein                       118
 3494382-3494419    AT2G07759.1:pre-tRNA; tRNA-Ser (anticodon: GCT)   119
 3494776-3494850    AT2G07761.1:pre-tRNA; tRNA-Tyr (anticodon: GTA)   120
 3495012-3495086    AT2G07762.1:pre-tRNA; tRNA-Pro (anticodon: TGG)   121
 3495442-3495512    AT2G07763.1:pre-tRNA; tRNA-Cys (anticodon: GCA)   122
 3495511-3496110    AT2G07739.1:unknown protein                       123
 3496440-3496511    AT2G07764.1:pre-tRNA; tRNA-Asn (anticodon: GTT)   124
 3497358-3497440    AT2G07765.1:pre-tRNA; tRNA-Tyr (anticodon: GTA)   125
 3501814-3501972    AT2G07835.1:unknown protein                       126
 3502319-3503476    AT2G07741.1:ATPase subunit 6                      127
 3503522-3503608    AT2G07766.1:pre-tRNA; tRNA-Ser (anticodon: TGA)   128
                                                                      120


Event 7            Chromosome 2
 12455055-12459541 AT2G28990.1:leucine-rich repeat protein kinase       1
 12460781-12465037 AT2G29000.1:leucine-rich repeat protein kinase       2
 12465764-12469464 AT2G29010.1:leucine-rich repeat protein kinase       3
                                                                      123
Event 8            Chromosome 3
12667227-12667370 AT3G31051.1:unknown protein                          1
 12667704-12667826 AT3G31068.1:unknown protein                         2
 12670276-12670499 AT3G31161.1:pseudogene, hypothetical protein        3
 12674427-12674618 AT3G31300.1:TE                                      4
 12677228-12678717 AT3G31310.1:TE                                      5
 12679591-12680669 AT3G31312.1:GYPSY TE                                6
 12681684-12683179 AT3G31314.1:CACTA TE                                7
 12685821-12691103 AT3G31317.1:non-LTR retrotransposon family          8
 12694627-12696002 AT3G31320.1:TE                                      9
 12697412-12697778 AT3G31330.1:TE                                     10
 12698079-12700757 AT3G31340.1:GYPSY TE                                    11
 12702587-12703222 AT3G31350.1:unknown protein                             12
 12704091-12704807 AT3G31355.1:transposable element gene; pseudogene, hypothetical protein, simil
                                                                           13
 12708257-12711435 AT3G31356.1:GYPSY TE                                    14
 12713010-12713628 AT3G31357.1:transposable element gene; pseudogene, hypothetical protein, simil
                                                                           15
 12713992-12716114 AT3G31358.1:GYPSY TE                                    16
 12716833-12722775 AT3G31359.1:GYPSY TE                                    17
 12723412-12724422 AT3G31360.1:GYPSY TE                                    18
 12725745-12729587 AT3G31365.1:helicase TE                                 19
 12735171-12737948 AT3G31367.1:GYPSY TE                                    20
 12739412-12740362 AT3G31370.1:transposable element gene                   21
 12742861-12745393 AT3G31373.1:transposable element gene-replication protein
                                                                           22
 12745879-12747374 AT3G31374.1:GYPSY TE                                    23
 12748365-12752403 AT3G31375.1:GYPSY TE                                    24
 12753386-12754761 AT3G31377.1:transposable element gene putative replication protein A1
                                                                           25
 12758024-12758958 AT3G31380.1:COPIA TE                                    26
 12760805-12762223 AT3G31390.1:GYPSY TE                                    27
 12762661-12766244 AT3G31395.1:non-LTR retrotransposon family              28
 12768984-12769481 AT3G31400.1:unknown protein                             29
 12770519-12770650 AT3G31401.1:unknown protein                             30
 12770931-12773539 AT3G31402.1:unknown protein                             31
 12770931-12773539 AT3G31402.2:unknown protein                             32
 12776573-12778649 AT3G31403.1:MUTATOR TE                                  33
 12779538-12780473 AT3G31406.1:TE                                          34
 12780479-12783581 AT3G31410.1:TE                                          35
 12784200-12784675 AT3G31415.1:terpene synthase/cyclase family protei      36
 12784676-12786759 AT3G31425.1:putative (+)-delta-cadinene synthase        37
 12787914-12792017 AT3G31420.1:non-LTR retrotransposon family              38
 12792940-12795066 AT3G31422.1:hAT-like transposase family                 39
 12795861-12796871 AT3G31430.1:unknown protein                             40
 12800324-12806091 AT3G31440.1:helicase TE                                 41
 12803911-12804796 AT3G31442.1:Sadhu non-coding retrotransposon family     42
 12810851-12813187 AT3G31450.1:MUTATOR TE                                  43
 12814911-12815570 AT3G31460.1:Retroelement pol polyprotein                44
 12818516-12820597 AT3G31470.1:non-LTR retrotransposon family              45
 12820631-12821686 AT3G31475.1:non-LTR retrotransposon family              46
 12825337-12827347 AT3G31490.1:GYPSY TE                                    47
 12828688-12830731 AT3G31500.1:GYPSY TE                                    48
 12833343-12835647 AT3G31510.1:unknown protein                             49
 12838149-12842889 AT3G31530.1:GYPSY TE                                    50
 12843392-12845748 AT3G31540.1:TE                                          51
 12852502-12859789 AT3G31630.1:GYPSY TE                                    52
 12861831-12864017 AT3G31720.1:non-LTR retrotransposon family              53
 12868798-12870124 AT3G31810.1:TE                                          54
 12875071-12877422 AT3G31900.1:unknown protein                             55
 12879031-12879375 AT3G31902.1:MADS-box protein                            56

 12879906-12880236 AT3G31903.1:Transcription factor (fragment)             57
 12885376-12891812 AT3G31904.1:helicase TE                                 58
 12892774-12895070 AT3G31905.1:TE pseudogene                               59
 12896942-12898508 AT3G31906.1:pseudogene, ATP-dependent CLPB protein 60
 12902409-12903522 AT3G31908.1:pseudogene, similar to aintegumenta-like protein
                                                                           61
 12906598-12907864 AT3G31909.1:MUTATOR TE                                    62
 12907877-12910391 AT3G31910.1:unknown protein                               63
 12909851-12912291 AT3G31915.1:TE                                            64
 12920070-12926590 AT3G31920.1:CACTA TE                                      65
 12928342-12929220 AT3G31930.1:TE                                            66
 12933228-12938295 AT3G31935.1:GYPSY TE                                      67
 12940786-12941768 AT3G31940.1:TE                                            68
 12942324-12949134 AT3G31945.1:GYPSY TE                                      69
 12950113-12952593 AT3G31950.1:unknown protein                               70
 12954001-12954422 AT3G31955.1:TE                                            71
 12954903-12955983 AT3G31960.1:unknown protein                               72
 12962491-12967061 AT3G31970.1:GYPSY TE                                      73
 12972404-12976508 AT3G31980.1:TE                                            74
 12978898-12981090 AT3G31990.1:TE pseudogene                                 75
 12981628-12982740 AT3G31993.1:CACTA TE                                      76
 12982726-12983028 AT3G31996.1:TE pseudogene                                 77
 12984313-12987051 AT3G32000.1:GYPSY TE                                      78
 12988334-12990208 AT3G32010.1:GYPSY TE                                      79
 12992006-12992614 AT3G32020.2:TE pseudogene                                 80
 12993299-12994435 AT3G32023.1:CACTA TE                                      81
 12994952-12998969 AT3G32021.1:CACTA TE                                      82
 13003010-13007712 AT3G32022.1:helicase TE                                   83
 13008566-13009829 AT3G32024.1:TE pseudogene                                 84
 13010636-13011960 AT3G32026.1:TE pseudogene                                 85
 13012603-13013955 AT3G32027.1:TE pseudogene                                 86
 13014606-13016975 AT3G32028.1:TE pseudogene                                 87
 13017167-13019596 AT3G32033.1:GYPSY TE                                      88
 13020879-13022411 AT3G32029.1:GYPSY TE                                      89
 13024557-13026492 AT3G32031.1:GYPSY TE                                      90
 13028679-13030475 AT3G32032.1:GYPSY TE                                      91
 13032458-13035348 AT3G32030.1:terpene synthase/cyclase family protein       92
 13035628-13036373 AT3G32035.1:non-LTR retrotransposon family                93
 13040231-13040344 AT3G32036.1:unknown protein                               94
 13047704-13049040 AT3G32040.1:geranylgeranyl pyrophosphate synthase         95
 13053130-13058318 AT3G32043.1:non-LTR retrotransposon family                96
 13061048-13062710 AT3G32047.1:electron carrier/ heme binding / iron ion binding / monooxygenase
                                                                             97
 13067626-13068582 AT3G32050.1:unknown protein                               98
 13069789-13069953 AT3G32052.1:unknown protein                               99
 13073033-13074690 AT3G32060.1:MUTATOR TE                                   100
 13075710-13076285 AT3G32070.1:transposable element gene; similar to unknown protein [Arabidopsis
                                                                            101
 13076748-13078338 AT3G32080.1:transposable element gene; similar to unknown protein [Arabidopsis
                                                                            102
 13078956-13079921 AT3G32090.1:transcription factor-related; FUNCTIONS IN: transcription factor ac
                                                                            103
 13080593-13088056 AT3G32091.1:GYPSY TE                                     104
 13088116-13091973 AT3G32092.1:GYPSY TE                                     105
 13092825-13093479 AT3G32093.1:transposable element gene; pseudogene, similar to Putative polypro
                                                                            106
 13094381-13095857 AT3G32095.1:transposable element gene; pseudogene, hypothetical protein
                                                                            107
 13096971-13097304 AT3G32100.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                            108
 13097952-13103951 AT3G32110.1:transposable element gene; non-LTR retrotransposon family (LINE),
                                                                            109
 13105076-13108692 AT3G32112.1:transposable element gene; copia-like retrotransposon family, has a
                                                                            110
 13109258-13113938 AT3G32115.1:transposable element gene; non-LTR retrotransposon family (LINE),
                                                                            111
 13116266-13118455 AT3G32116.1:GYPSY TE                                     112
 13119182-13121222 AT3G32118.1:transposable element gene; pseudogene, hypothetical protein, simil
                                                                            113
 13124466-13125316 AT3G32120.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                         114
 13127479-13128165 AT3G32130.1:FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic
                                                                         115
 13134079-13136427 AT3G32135.1:MUTATOR TE                                116
 13138221-13139009 AT3G32140.1:transposable element gene; similar to unknown protein [Arabidopsis
                                                                         117
                                                                         172
Event 9
16244952-16250205 AT3G44705.1:non-LTR retrotransposon family               1
 16251834-16253535 AT3G44710.1:unknown protein                             2
 16260205-16262484 AT3G44713.1:unknown protein                             3
 16263200-16263875 AT3G44716.1:unknown protein                             4
 16263200-16264261 AT3G44716.2:unknown protein                             5
 16264449-16264931 AT3G44717.1:unknown protein                             6
 16266111-16266314 AT3G44718.1:Plant thionin family protein                7
                                                                         177
Event 10           Chromosome 4
1695206-1697152    AT4g03795 TE GYPSY                                      1
1743791-1748332    AT4g03800 TE GYPSY                                      2
                                                                         179
Event 11
 5855176-5856327 AT4G09190.1:F-box family protein; FUNCTIONS IN: molecular_function unknown; 
                                                                           1
 5859257-5861803 AT4G09200.1:SPla/RYanodine receptor (SPRY) domain-containing protein; FUNCTI
                                                                           2
 5862109-5864769 AT4G09205.1:transposable element gene; copia-like retrotransposon family, has a
                                                                           3
 5870289-5871160 AT4G09210.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                           4
 5872401-5872760 AT4G09220.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                           5
 5873202-5874506 AT4G09230.1:transposable element gene; pseudogene, hypothetical protein
                                                                           6
 5876578-5878978 AT4G09250.1:FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic
                                                                           7
 5879363-5882074 AT4G09255.1:transposable element gene; copia-like retrotransposon family, has a
                                                                           8
 5887592-5888463 AT4G09260.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                           9
 5889703-5890062 AT4G09270.1:unknown protein; FUNCTIONS IN: molecular_function unknown; INV
                                                                          10
 5890496-5891808 AT4G09280.1:transposable element gene; similar to Ulp1 protease family protein [
                                                                          11
 5893344-5894969 AT4G09290.1:transposable element gene; similar to Ulp1 protease family protein [
                                                                          12
 5898798-5901014 AT4G09300.1:FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic
                                                                          13
 5902826-5905372 AT4G09310.1:SPla/RYanodine receptor (SPRY) domain-containing protein; FUNCTI
                                                                          14
 5905647-5908853 AT4G09313.1:transposable element gene; copia-like retrotransposon family, has a
                                                                          15
 5914032-5916593 AT4G09316.1:transposable element gene; copia-like retrotransposon family, has a
                                                                          16
 5923400-5924532 AT4G09320.1:nucleoside diphosphate kinase type 1 (NDPK1) gene, complete
                                                                          17

Event 12
 13620977-13623934 AT4g27190     NBS-LRR                                   1
 13624728-13627237 AT4g27200     TE COPIA                                  2
 13627417-13631922 AT4g27210     TE COPIA                                  3
 13633953-13636712 AT4g27220     NBS-LRR                                   4
                                                                         193
Event 13           Chromosome 5
 11510033-11512009 AT5G31496.1:GYPSY TE                                    1
 11515442-11516644 AT5G31637.1:GYPSY TE                                    2
 11517598-11518965 AT5G31778.1:GYPSY TE                                    3
 11519920-11521244 AT5G31919.1:GYPSY TE                                    4
 11521176-11522261 AT5G31989.1:GYPSY TE                                    5
 11527891-11533149 AT5G32060.1:GYPSY TE                                    6
 11533469-11537215 AT5G30420.1:unknown protein                             7
 11541463-11543768 AT5G31412.1:protein dimerization;                       8
 11548174-11549679 AT5G31807.1:MUTATOR TE            9
 11551762-11552832 AT5G30440.1:CATCA TE             10
 11555408-11558380 AT5G31511.1:CATCA TE             11
 11559203-11561951 AT5G30450.1:CATCA TE             12
 11563124-11564305 AT5G30721.1:GYPSY TE             13
 11564677-11565897 AT5G30460.1:GYPSY TE             14
 11566337-11566789 AT5G30648.1:GYPSY TE             15
 11567516-11568304 AT5G30870.1:TE                   16
 11569502-11572297 AT5G31092.1:GYPSY TE             17
 11573252-11573608 AT5G31314.1:TE                   18
 11575368-11575838 AT5G31536.1:TE                   19
 11576745-11577128 AT5G31758.1:TE                   20
 11578104-11580836 AT5G31980.1:GYPSY TE             21
 11587319-11589681 AT5G30470.1:CATCA TE             22
 11590737-11591989 AT5G30480.1:CATCA TE             23
 11592943-11595226 AT5G30207.1:GYPSY TE             24
 11596127-11610717 AT5G30269.1:COPIA TE             25
                               Tandem duplicates   208
                               Total genes         402

				
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