Docstoc

Supporting Information zu A Model for Carbohydrate ... - KOPS

Document Sample
Supporting Information zu A Model for Carbohydrate ... - KOPS Powered By Docstoc
					                                              Phaeodactylum tricornutum                                                                                                                                                                                                     Thalassiosira pseudonana
                                                                                                      Best Blast hit                                              Localisation
Enzyme          Name           Pathway         Protein ID   NCBI AccessioNumber of isoegenomic Coordgene               organism        % identity   accession no. mTP          SP      other          Loc            RC             TPlen       Signal peptide assigned Loca Name             Protein ID     Number of isoegenomic Coordinates
2-phosphoglyc PGP              Photorespiratio48026                      1             Phatr2/chr_15: PREDICTED: sRattus norvegi 25                 XP_213235 0,761            0,249   0,028          M              3              28                         mitochondrial? PGP             25544                        Thaps3/chr_19c_29:134214-137101
6-Phosphogluc6PGDH             Calvin cycle 45333                        2             Phatr2/chr_6:8 6-phosphogluc Phytophthora i 68               AAL76320      0,027        0,973   0,068          S              1              18          LES-IQT        ER/pps?
6-Phosphogluc6PGDH             Calvin cycle 26934                        2             Phatr2/chr_6:8 6-phosphogluc Phytophthora i 68               AAL76320      0,200        0,174   0,538          _              4              -                          cytosol
AcetylCoA syn ACS1             Glykolysis/gluc 22974                     2             Phatr2/chr_20: acetyl-CoA synDictyostelium d47               XP_642493 0,074            0,057   0,934          _              1              -                          cytosol          ACS1          34187          1 of 2        Thaps3/chr_5:1434158-1436335
AcetylCoA syn ACS2             Glykolysis/gluc 645                       2             Phatr2_bd/bd_ AMP-depende Magnetococcu 52                    ZP_00607585 0,064          0,908   0,068          S              1              16          AVA-TTH        plastid, SignalP ACS2          270246         2 of 2        Thaps3/chr_4:1493546-1496038
Adenylate kina ADK             Purine metabo 20093                       1             Phatr2/chr_7:8 putative adeny Oryza sativa (j 52             XP_479721 0,069            0,850   0,049          S              2              22          LLA-FAP        plastid
alanine/glyoxyl SGAT           Photorespiratio40344                      1             Phatr2/chr_23: serine-pyruvate  Burkholderia c 47            ZP_00458764 0,933          0,019   0,068          M              1              37                         mitochondria                   22208          1             Thaps3/chr_4:861901-863613
Aldolase        Aldolase       Calvin cycle 31147                        1             Phatr2/chr_29: haloacid dehal Arabidopsis tha   34           AT5G53850 0,297            0,039   0,791          _              3              -                          cytosol
alpha carbonic CA1             Carbon metabo   35370                     7             Phatr2/chr_7:7 carbonic anhydArabidopsis tha    11           NP_172287 0,21             0,814   0,06           S              2              18          VRC-RSW        putatively secr CA1            22391                        Thaps3/chr_4:1704676-1706645
alpha carbonic CA2             Carbon metabo   44526                     7             Phatr2/chr_4:8 Carbonic anhy Ovis aries         8            P08060        0,022        0,956   0,075          S              1              18          TTA-QTG        putatively secr CA2            22257                        Thaps3/chr_4:1055978-1057638
alpha carbonic CA3             Carbon metabo   55029                     7             Phatr2/chr_21: Carbonic anhy Nostoc sp. PC 30                P94170        0,149        0,814   0,034          S              2              26          GLG-LNK        putatively secr CA3            262006                       Thaps3/chr_4:89470-90111
alpha carbonic CA6             Carbon metabo   54251                     7             Phatr2/chr_4:8 carbonic anhydRattus norvegi 16               291819        0,072        0,858   0,134          S              2              16          ATA-QEG        putatively secr CA4            262009                       Thaps3/chr_4:113394-113810
alpha carbonic CA7             Carbon metabo   42574                     7             Phatr2/chr_1:4 Carbonic anhy Ovis aries         5            P08060        0,024        0,906   0,217          S              2              16          AEA-DLF        putatively secreted
ATPase gamm AtpC               ATP synthesis 20657          Q41075       1             Phatr2/chr_9:7 ATP synthase Odontella sine 80                Q06908        0,231        0,761   0,045          S              3              15          ASA-FTT        plastid* [1,3,4]
beta carbonic aCA4             Carbon metabo   51305        AAL07493     7             Phatr2/chr_1:4 carbonic anhydAspergillus cla 47              XP_001273459  0,118        0,795   0,08           S              2              19          VEA-FNA        plastid* [7]
beta carbonic aCA5             Carbon metabo   45443        BAD67442     7             Phatr2/chr_7:1 carbonic anhydAspergillus cla 46              XP_001273459  0,084        0,845   0,082          S              2              19          VDA-LNV        putatively secreted
Beta-glucan synthesis-associaChrysolaminar 50238                         3             Phatr2/chr_28: hypothetical pr Yarrowia lipoly 30            XP_501820 0,128            0,836   0,021          S              2              27          TDA-SWV        ER-Golgi (secreted?)           3105           1 of 3        Thaps3/chr_3:130440-132823
Beta-glucan synthesis-associaChrysolaminar 56509                         3             Phatr2/chr_27: hypothetical pr Ustilago maydi 28             XP_759188 0,143            0,922   0,017          S              2              33          AAS-NWI        ER-Golgi (secr TPS_138072 4956                2 of 3        Thaps3/chr_4:2393022-2394416
Beta-glucan synthesis-associaChrysolaminar 48300                         3             Phatr2/chr_17: hypothetical pr Ustilago maydi 30             XP_761956 0,023            0,906   0,153          S              2              20          TIS-VSI        ER-Golgi (secreted?)           9237           3 of 3        Thaps3/chr_12:940118-942696
Beta-glucosidase (glycosyl hy Chrysolaminar 50351                        1             Phatr2/chr_29: TonB-like proteLentisphaera a 52              ZP_01873221 SgnalP HMM S0,723      Signal Peptide not recognised by TargetP                                ER-Golgi resid TPS_106128 28413                             Thaps3/chr_5:1900338-1902076
Beta-glucosidase (glycosyl hy Chrysolaminar 49793                        2             Phatr2/chr_24: putative thermo  uncultured met43             YP_684568 0,13             0,093   0,835          _              2              -                          cytosol
Beta-glucosidase (glycosyl hy Chrysolaminar 45128                        2             Phatr2/chr_6:2 b-glucosidase, Pedobacter sp 35               ZP_01885707 0,269          0,043   0,812          _              3              -                          cytosol
bicarbonate traSLV4_1          Carbon metabo   45656                     3             Phatr2/chr_7:8 hypothetical pr Nitrococcus mo   34           ZP_01128815 0,248          0,817   0,022          S              3              24          SAA-FHT        plastid          SLV4_1        270240                       Thaps3/chr_1:1419165-1419927
bicarbonate traSLV4_2          Carbon metabo   32359                     3             Phatr2/chr_1:2 probable Na+ dCyanidioschyz 48                CMR009C       0,133        0,579   0,199          S              4              33          GSA-FTS        plastid          SLV4_2        267979                       Thaps3/chr_1:974609-977268
bicarbonate traSLV4_3          Carbon metabo   54405                     3             Phatr2/chr_7:1 solute carrier faBos taurus      32           NP_851379 0,044            0,162   0,955          _              2              -                          membrane pro SLV4_3            13887                        Thaps3/chr_8:159912-161745
citrate synthas CISY           Citrate cycle (T30145                     1             Phatr2/chr_21: Citrate synthasDaucus carota 58               O80433        0,891        0,035   0,115          M              2              33                         mitochondria CSN1              11411          1             Thaps3/chr_20:29093-31078
citrate synthas ACL            Citrate cycle (T54477                     1             Phatr2/chr_8:3 PREDICTED: sCanis lupus fam      58           XP_850198 0,427            0,037   0,648          _              4              -                          cytosol          SCS2          411            1             Thaps3/chr_4:1679905-1680910
dihydrolipoami pDLDH1          Energy produc 30113                       1             Phatr2/chr_20: Os05g0156700Oryza sativa (j 61                NP_00105469 0,045          0,827   0,129          S              2              21          TLA-FAP        plastid          DLDH2         24399                        Thaps3/chr_11b:19098-21311
dihydrolipoami DLDH1           Glycolysis / Glu26432                     1             Phatr2/chr_5:2 dihydrolipoami Arabidopsis tha   60           AT1G48030 0,919            0,095   0,057          M              1              32                         mitochondria LPD               36716          1             Thaps3/chr_11a:734324-735897
Endo-1,3-beta-Phatr1_44409 Chrysolaminar 54681                           2             Phatr2/chr_12: glycoside hydr Flavobacterium31               YP_001196504  0,053        0,888   0,05           S              1              20          ATA-QTC        Vacuolar via ER-Golgi? (secre35711                          Thaps3/chr_7:538691-539648
Endo-1,3-beta-Phatr1_49780 Chrysolaminar 54973                           2             Phatr2/chr_20: endo-1,3-beta- Xanthomonas 36                 NP_636562 0,044            0,899   0,051          S              1              21          VAA-QTP        Vacuolar via ER-Golgi? (secreted?)
Endo-1,3-beta-glucosidase (g Chrysolaminar 46976                         1             Phatr2/chr_12: beta-glucan-bi Medicago trunc25               ABB69781      0,142        0,025   0,906          _              2              -                          Cytosolic type II transmembra 1554                          Thaps3/chr_1:1823548-1827535
Exo-1,3-beta-glucanase         Chrysolaminar 49294                       4             Phatr2/chr_21: putative exo-1, Phytophthora i 48             AAM18483      0,061        0,937   0,028          S              1              32          AEA-DNT        Vacuolar via ER-Golgi? (secre13556                          Thaps3/chr_2:1219499-1221471
Exo-1,3-beta-g Phatr1_46154 Chrysolaminar 56510                          4             Phatr2/chr_7:1 hypothetical pr Coprinopsis cin29             EAU85291      0,082        0,818   0,093          S              2              22          VES-REY        ER-Golgi resident, contains retention signal "REEL"
Exo-1,3-beta-g Phatr1_48127 Chrysolaminar 56506                          4             Phatr2/chr_10: hypothetical pr Ustilago maydi 28             XP_761697 SignalP HMM: 0,758       Signal Peptide not recognised by TargetP     17          SLL-RKA        Vacuolar via ER-Golgi? (secreted?)
Exo-1,3-beta-g Phatr1_50463 Chrysolaminar 49610                          4             Phatr2/chr_23: hypothetical pr Ustilago maydi 28             XP_761697 0,07             0,100   0,925          _              1              -                          unclear
Ferredoxin thioFtrB            Electron transp50907                      1             Phatr2/chr_7:8 ferredoxin-thio Spinacia olerac65             CAA52867      0,07         0,946   0,02           S              1              18          TQA-FMP        plastid          FtrB          26405                        Thaps3/chr_13:610874-611571
fructose bishosFba3            Glycolysis      29014                     5             Phatr2/chr_14: fructose-bisphoCryptococcus n    61           XP_568771 0,133            0,095   0,837          _              2              -                          cytosol
Fructose-1,6-b FBP             Calvin cycle 23247                        5             Phatr2/chr_22: fructose-1,6-bi Oryza sativa (j 48            NP_915641 0,043            0,104   0,933          _              1              -                          cytosol
Fructose-1,6-b FBPC1           Calvin cycle 42886                        5             Phatr2/chr_1:1 fructose-1,6 bisBigelowiella na39             AAP79192      0,022        0,939   0,076          S              1              30          TNS-FQT        plastid
Fructose-1,6-b FBPC2           Calvin cycle 42456                        5             Phatr2/chr_1:1 fructose-bisphoTriticum aestiv 50             CAA37908      SignalP HMM: 0,989   Signal Peptide not recognised by TargetP     17          VRA-FLP        plastid
Fructose-1,6-b FBPC3           Calvin cycle 31451                        5             Phatr2/chr_1:1 fructose 1,6-bischloroplast Ga 45             CAC82800      0,105        0,914   0,013          S              1              25          ARA-NSI        plastid? (cleavage site might be mispredicted, "VVA-FTA" motif contained)
Fructose-1,6-b FBPC4           Calvin cycle 54279                        5             Phatr2/chr_4:1 fructose-1,6-bi Cyanidioschyz 42              CMO245C       0,03         0,966   0,025          S              1              28          IQA-WIP        plastid* [2]
Fructose-1,6-b FbaC1           Calvin cycle 825             AAO43196     5             Phatr2_bd/bd_ fructose-1,6-bi Odontella sine 82              AAM66752      0,081        0,875   0,06           S              2              16          VVA-FAP        plastid* [2,3,4,5]
Fructose-1,6-b FbaC2           Calvin cycle 22993           AAO43262     5             Phatr2/chr_20: plastid C1 clas Heterocapsa tr 63             AAV71135      0,171        0,815   0,077          S              2              16          CGA-FAP        plastid
Fructose-6-Pho  FSA            Calvin cycle 20779                        1             Phatr2/chr_10: Putative fructo Synechococcu 29               ZP_01084071 0,587          0,759   0,006          S              5              28          VWG-WTP        plastid* [2]
Fructose-bisph Fba4            Glycolysis      42447        AAV71140     5             Phatr2/chr_1:9 Fructose-bisph Oceanobacillus63               Q8ELI2        0,088        0,194   0,751          _              3              -                          cytosol
fructose-bisphoFbaC5           Calvin cycle 51289                        5             Phatr2/chr_30: fructose-1,6-bi Galdieria sulph53             AAF27641      0,228        0,833   0,011          S              2              22          AAA-FSA        plastid
Glucokinase Glucokinase Glycolysis/chry48774                             1             Phatr2/chr_19: Glucokinase Crocosphaera 34                   ZP_00516463 0,288          0,148   0,428          _              5              -                          cytosol          GLK1          261320                       Thaps3/chr_2:758305-759252
Glucokinase Glucokinase Glycolysis/chry56514                             1             Phatr2/chr_19: Glucokinase Crocosphaera 34                   ZP_00516463 0,022          0,934   0,107          S              1              27          TNS-RMS        Vacuolar via ER-Golgi?
Glucose-6-pho Phatr1_29709 Pentose phosp30040                            2             Phatr2/chr_20: Glucose-6-pho Solanum tuber 41                P37830        SignalP HMM: 0,405   TargetP predicts signal peptide, probably mispredicted                  cytosol
Glucose-6-pho G6PDH/6PGD Calvin cycle 54663                              2             Phatr2/chr_11: 6-phosphogluc Phytophthora i 63               AAL76320      0,152        0,188   0,594          _              3              -                          cytosol
Glucose-6-pho G6PDH/6PGD Calvin cycle 54663                              2             Phatr2/chr_11: cytoplasmic gluMesembryanth 51                AAD11426      0,152        0,188   0,594          _              3              -                          cytosol
Glucose-6-pho GPI              Calvin cycle/G 23924         ABH11445     3             Phatr2/chr_28: glucose-6-phosVibrio cholerae65               AAF93547      0,106        0,050   0,918          _              1              -                          cytosol
Glucose-6-pho GPI              Calvin cycle/G 56512                      3             Phatr2/chr_29: cytosolic gluco Chondrus crisp61              ABH11444      0,025        0,889   0,063          S              1              26          SSA-FVP        Plastid
Glucosephosp GPI               Calvin cycle/G 53878                      3             Phatr2/chr_28: glucose-6-phosPhytophthora m     49           AAP51063      0,038        0,215   0,893          _              2              -                          cytosol
Glutaredoxin GLRX1             Redox           16854                     5             Phatr2/chr_29: putative glutareCandida albica 48             XP_720834 0,121            0,055   0,886          _              2              -                          cytosol
Glutaredoxin GLRX2             Redox           56497                     5             Phatr2/chr_3:5 hypothetical pr Yarrowia lipoly 42            XP_501474 0,026            0,944   0,082          S              1              19          CSS-ENL        ER/periplastidic space?
Glutaredoxin GLRXC1            Redox           43497                     5             Phatr2/chr_2:6 putative mitochCandida albica 49              XP_719021 SignalP HMM: 0,997       Signal Peptide not recognised by TargetP     20          AQA-WSV        plastid
Glutaredoxin GLRXC2            Redox           39133                     5             Phatr2/chr_18: Glutaredoxin, G  Synechococcu 30              ABB27080      0,185        0,846   0,043          S              2              16          AAA-FAP        plastid
Glutaredoxin GLRXM1            Redox           37615                     5             Phatr2/chr_13: Glutaredoxin Plesiocystis pa 62               ZP_01906911 0,417          0,074   0,475          _              5              -                          mitochondria ? GRX             19158                        Thaps3/chr_8:997809-998174
glyceraldehydeGapC1            Calvin cycle 22122           AAF34329     6             Phatr2/chr_15: glyceraldehydeOdontella sine 85               AAF34326      SignalP HMM: 0,998   Signal Peptide not recognised by TargetP     17          AAA-YSS        plastid** [6]
glyceraldehydeGapC2a           Glycolysis      51128        AAF34325     6             Phatr2/chr_16: glyceraldehydeOdontella sine 74               AAF34327      0,614        0,077   0,286          M              4              76                         cytosol
glyceraldehydeGapC2b           Glycolysis      51129        AAF34325     6             Phatr2/chr_16: glyceraldehydeOdontella sine 74               AAF34327      0,614        0,077   0,286          M              4              76                         cytosol
glyceraldehydeGapC4            Glycolysis      32747        AAU81889     6             Phatr2/chr_2:7 mitochondrial gOdontella sine 86              AAU81890      0,654        0,053   0,305          M              4              20                         mitochondria
glyceraldehydeGAPDH            Glycolysis      23598                     6             Phatr2/chr_25: glyceraldehydeSynechococcu 57                 ZP_01124355 0,397          0,101   0,414          _              5              -                          cytosol
glycine decarb GDCH            Photorespiratio32847                      1             Phatr2/chr_2:9 Glycine cleava Alkaliphilus me57              ZP_00800556 0,945          0,023   0,074          M              1              33                         mitochondria GDCH              28521          1             Thaps3/chr_6:477877-478711
glycine decarb GDCP            Photorespiratio22187                      1             Phatr2/chr_16: Glycine dehydrVibrio parahae 57               Q87I05        0,836        0,036   0,173          M              2              28                         mitochondria GDCP              39799          1             Thaps3/chr_3:354806-358132
glycine decarb GDCT            Photorespiratio56477                      1             Phatr2/chr_10: FAD dependenPlesiocystis pa 55                EDM79519      0,905        0,03    0,159          M              2              21                         mitochondria GDCT              36208          1             Thaps3/chr_9:375834-377204
glycolate oxida GOX            Photorespiratio22568                      2             Phatr2/chr_18: putative glycola Oryza sativa (j 39           XP_476669 0,046            0,188   0,937          _              2              -                          peroxisomes GOX                406            1             Thaps3/chr_4:1526857-1528121
glycolate oxida GOX2           Glyoxylate met50804                       2             Phatr2/chr_4:8 l-lactate dehyd Candidatus Pe 40              AAZ21101      0,489        0,042   0,576          _              5              -                          mitochondria TPS 102514 3353                                Thaps3/chr_3:752234-753767
Glycosyl transferase, family 4 Chrysolaminar 56502                       1             Phatr2/chr_1:2 putative callose Oryza sativa (j 32           BAD23015      0,719        0,770   0,002          S              5              25          SRA-SST        ER-Golgi to plasma membran 10318                            Thaps3/chr_15:919541-927191
glyoxylate carbPhatr9368       Glyoxylate met56476                       1             Phatr2/chr_12: hypothetical pr Debaryomyces33                XP_461633 0,363            0,697   0,033          S              4              19          STA-FVP        plastid          ilvB          35164                        Thaps3/chr_6:1269451-1271556
hydroxypyruva Phatr38464       Photorespiratio56499                      1             Phatr2/chr_16: HydroxypyruvaRoseiflexus ca 40                YP_00143334 0,843          0,057   0,064          M              2              90                         mitochondria                   261750         1             Thaps3/chr_3:792112-793445
Inositol dehydr InDH           Inositol metabl 51869                     2             Phatr2/chr_7:3 Putative oxidorBacillus subtilis30            O05389        0.096        0.125    0.767         _              2              -                          cytosol
Inositol dehydr InDH           Inositol metabo34720                      2             Phatr2/chr_6:2 MORN repeat uncultured mar37                  AAR37622     0,425        0,051    0,506         _              5              -                          cytosol
isocitrate lyase Phatr1_14276 Glyoxylate met51088                          1              Phatr2/chr_15: hypothetical pr Ustilago maydi 47          XP_760432    0,427        0,028    0,696         _              4              -                          mitochondria/p TPS_108571 35523                          Thaps3/chr_7:493243-495141
malate dehydro   MDH          Carbon metabo  51297                         1              Phatr2/chr_31: malate dehydro  Isochrysis galb 71         AAW79319     0,925        0,029    0,122         M              1              7                          mitochondria MDH          20726                          Thaps3/chr_1:985790-987247
malate synthasMS              Glyoxylate & P 54478                         1              Phatr2/chr_8:4 malate synthasChlamydomon 53               AAP75564     0,125        0,097    0,824         _              2              -                          peroxisome     TPS_2373   26293                          Thaps3/chr_6:1221943-1224104




                                                                                                                                       Konstanzer Online-Publikations-System (KOPS)
                                                                                                                                  URN: http://nbn-resolving.de/urn:nbn:de:bsz:352-opus-72872
                                                                                                                                    URL: http://kops.ub.uni-konstanz.de/volltexte/2009/7287
NAD malic enz ME1          Carbon metabo  56501                       2             Phatr2/chr_2:2 malic enzyme Dictyostelium d46       XP_645111 0,913          0,012          0,146          M             2             16                 mitochondria MAO1               34030                      Thaps3/chr_5:366187-368021
NADP malic enProbably NADP Malic enzyme27477                          2             Phatr2/chr_8:8 NADP-depend Phaseolus vulg52         P12628      0,569        0,496          0,028          M             5             32                 mitochondria
oxoglutarate/m OMT1        Carbon metabo  8990                        2             Phatr2/chr_1:1 Hypothetical prCaenorhabditis34      AAB37890    0,447        0,147          0,375          M             5             63                 mitochondria OMT1               20731                      Thaps3/chr_1:1029873-1031344
oxoglutarate/m OMT2        Carbon metabo  16785                       2             Phatr2/chr_28: oxoglutarate/m Plasmodium fa 38      NP_704315 0,197          0,066          0,775          _             3             -                  unclear          OMT2           26366                      Thaps3/chr_10:794360-795713
PhophoglyceraPGK           Glycolysis     29157        AAF45020       3             Phatr2/chr_15: phosphoglycer Cyanidioschyz 66       CMJ305C     0,303        0,775          0,023          S             3             20   AAA-FAP       plastid
PhophoglyceraPGK           Glycolysis     51125                       3             Phatr2/chr_16: phosphoglycer Kryptoperidiniu55      AAW79329    0,361        0,06           0,685          _             4             -                  cytosol
PhophoglyceraPGK           Glycolysis     48983        AAF45021       3             Phatr2/chr_20: PhosphoglycerSynechococcu 62         ZP_01079384 0,959        0,014          0,066          M             1             42                 mitochondria
phosphoenolpyPEPCK         Pyruvate meta 23074                        1             Phatr2/chr_21: phosphoenolpyCampylobacte 58         ZP_00370942 0,946        0,021          0,066          M             1             18                 mitochondria PEPCK              5186                       Thaps3/chr_5:566357-568410
phosphoenolpyPEPC1         Pyruvate meta 56026                        2             Phatr2/chr_17: Phosphoenolp Chlamydomon 31          Q6R2V6      0,04         0,919          0,043          S             1             20   SSA-SPL       ER/periplastidi PEPC            257092                     Thaps3/chr_5:201455-204623
phosphoenolpyPEPC2         Pyruvate meta 20853                        2             Phatr2/chr_10: Phosphoenolp Alkalilimnicola 41      ZP_00866642 0,947        0,013          0,105          M             1             17                 mitochondria PEPC2              268546                     Thaps3/chr_3:1899863-1902862
Phosphofructo PFK          Glycolysis     47690                       4             Phatr2/chr_14: pyrophosphate Cyanidioschyz 50       CMM196C     0,018        0,957          0,067          S             1             26   AAA-TYT       plastid ? (cleavage site might be mispredicted)
Phosphofructo PFK          Glycolysis     55126                       4             Phatr2/chr_25: PyrophosphatePropionibacter 51       P29495      0,268        0,06           0,635          _             4             -                  cytosol
Phosphofructo PFK          Glycolysis     50424                       4             Phatr2/chr_29: pyrophosphate Cyanidioschyz 47       CMM196C     0,051        0,075          0,954          _             1             -                  cytosol
Phosphofructo PFK          Glycolysis     56524                       4             Phatr2/chr_29: pyrophosphate Cyanidioschyz 47       CMM196C     0,824        0,03           0,217          M             2             15                 mitochondria
Phosphogluco PGM           Glycolysis     48819                       4             Phatr2/chr_19: putative phosp Oryza sativa Ja  30   BAD35745    0,364        0,75           0,017          S             4             26   AFA-WSP       plastid
Phosphogluco PGM           Glycolysis     50718                       4             Phatr2/chr_2:6 putative cytosoBromus inermi 44      AAF04862    0,179        0,680          0,094          S             3             22   TEA-FAH       plastid
Phosphogluco PGM           Glycolysis     51225                       4             Phatr2/chr_23: phosphoacetyl Aedes aegypti 31       AAX47077    0,073        0,074          0,931          _             1             -                  cytosol
Phosphogluco PGM           Glycolysis     50118                       4             Phatr2/chr_27: phosphoglucom    Xenopus tropic37    NP_00101670 0,442        0,039          0,565          _             5             -                  cytosol
Phosphogluco PGL           Calvin cycle 31882                         2             Phatr2/chr_1:1 6-phosphogluc Cryptococcus n    35   CNE04030    0,125        0,111          0,807          _             2             -                  cytosol
Phosphogluco PGL           Calvin cycle 38631                         2             Phatr2/chr_16: PREDICTED: sRattus norvegi 77        XP_214296 0,088          0,945          0,026          S             1             25   CHG-FVP       plastid          PGL            10378                      Thaps3/chr_16a:182262-183170
Phosphoglycer PGAM         Glycolysis     43253                       7             Phatr2/chr_1:2 phosphoglycer Chlorobium tep50       AAM71645    0,87         0,065          0,12           M             2             39                 mitochondria
Phosphoglycer PGAM         Glycolysis     43812                       7             Phatr2/chr_3:9 phosphoglycer Corynebacteriu44       CAI38093    0,346        0,917          0,005          S             3             30   SLA-WRT       plastid
Phosphoglycer PGAM         Glycolysis     51298                       7             Phatr2/chr_31: 2,3-bisphosphoChlorobaculum60        Q8KFC8      0,453        0,836          0,005          S             4             17   AS-FTH        plastid
Phosphoglycer PGAM         Glycolysis     33839                       7             Phatr2/chr_4:4 PhosphoglycerChlorobium ph 55        ZP_00531074 0,935        0,032          0,066          M             1             21                 mitochondria
Phosphoglycer PGAM         Glycolysis     26201                       7             Phatr2/chr_4:8 2,3-bisphosphoBdellovibrio ba 49     Q6MJP3      0,702        0,058          0,275          M             3             22                 mitochondria
Phosphoglycer PGAM         Glycolysis     35164                       7             Phatr2/chr_7:2 phosphoglycer Geobacter met34        ABB31884    0,811        0,017          0,349          M             3             28                 mitochondria
Phosphoglycer PGAM         Glycolysis     42857                       7             Phatr2/chr_1:1 PhosphoglycerThermoanaero 52         NP_624013 0,046          0,893          0,038          S             1             24   CEA-LLV       plastid? (cleavage site might be mispredicted)
phosphopyruvaEnolase       Pyruvate meta 56468         AAR97551       1             Phatr2/chr_31: enolase 2        Heterocapsa tr 68   AAU20794    0,287        0,777          0,016          S             3             20   TLA-FAP       plastid
phosphopyruvaEnolase       Glycolysis     1572                        2             Phatr2_bd/bd_ enolase 2         Heterocapsa tr 64   AAU20794    0,949        0,013          0,096          M             1             19                 mitochondria
phosphopyruvaEnolase? (app Glycolysis     1874                        2             Phatr2_bd/bd_ enolase 2         Heterocapsa tr 64   AAU20794    0,949        0,013          0,096          M             1             19                 mitochondria? (apparently unfunctional gene copy)
Phosphoribulo Prk          Pyruvate meta 50773                        1             Phatr2/chr_3:1 phosphoribulokOdontella sine 81      CAA69902    0,399        0,451          0,083          S             5             15   AAA-FAP       plastid
pyruvate carbo PYC1        Pyruvate meta 30519                        2             Phatr2/chr_23: Hypothetical prCaenorhabditis54      CAB02872    0,882        0,011          0,226          M             2             11                 mitochondria PYC                11075                      Thaps3/chr_19a_19:55337-59769
pyruvate carbo PYC2        Pyruvate meta 49339                        2             Phatr2/chr_21: GA13539-PA Drosophila pse50          EAL26409    SignalP HMM: 1,000          Signal Peptide not recognised by TargetP   19   AAA-FAP       plastid
pyruvate dehydPDHA1        Pyruvate meta 55035                        1             Phatr2/chr_21: pyruvate dehydCyanidioschyz 54       CMT256C     0,926        0,031          0,083          M             1             41                 mitochondria PDHA1              268374                     Thaps3/chr_2:2164413-2165762
pyruvate dehydDHLTA        Pyruvate meta 17401                        2             Phatr2/chr_1:7 putative dihydr Oryza sativa (j 34   XP_550447 0,963          0,012          0,066          M             1             46                 mitochondria LAT2               268280        1            Thaps3/chr_2:1227397-1229212
pyruvate dehydDHLTA        Pyruvate meta 23850                        2             Phatr2/chr_27: dihydrolipoami Synechocystis 39      NP_441936 0,312          0,653          0,033          S             4             21   VDA-FRV       plastid          DHLTA putativ 547                         Thaps3/chr_6:1514855-1516363
pyruvate kinas PK1         Glycolysis     22404        AAU81891       7             Phatr2/chr_17: pyruvate kinas Magnetospirillu49     CAM77898    SignalP HMM: 1,000          Signal Peptide not recognised by TargetP   15   GHA-FVP       plastid
pyruvate kinas PK2         Glycolysis     49098        AAU81892       7             Phatr2/chr_20: pyruvate kinas Achlya bisexua58      AAU81896    0,156        0,054          0,841          _             2             -                  cytosol
pyruvate kinas PK3         Glycolysis     56445        AAU81893       7             Phatr2/chr_20: pyruvate kinas Achlya bisexua55      AAU81896    0,096        0,278          0,565          _             4             -                  cytosol
pyruvate kinas PK4a        Glycolysis     45997        AAU81894       7             Phatr2/chr_8:9 pyruvate kinas Achlya bisexua55      AAU81896    0,074        0,146          0,848          _             2             -                  cytosol
pyruvate kinas PK4b        Glycolysis     27502        AAU81894       7             Phatr2/chr_8:9 pyruvate kinas Achlya bisexua55      AAU81896    0,074        0,146          0,848          _             2             -                  cytosol
pyruvate kinas PK5         Glycolysis     49002                       7             Phatr2/chr_20: pyruvate kinas Achlya bisexua45      AAU81895    0,939        0,013          0,11           M             1             21                 mitochondria
pyruvate kinas PK6         Glycolysis     56172                       7             Phatr2/chr_23: pyruvate kinas Achlya bisexua44      AAU81895    0,958        0,012          0,08           M             1             40                 mitochondria PK                 22345                      Thaps3/chr_4:1500482-1502190
pyruvate ortho PPDK        Pyruvate meta 21988                        1             Phatr2/chr_15: pyruvate ortho Eleocharis vivi 46    BAA21653.   SignalP HMM: 0,989          Signal Peptide not recognised by TargetP   24   IFS-FVT       plastid          PPDK           23810                      Thaps3/chr_8:848811-851865
Ribosephosph RPI           Calvin cycle 50995                         1             Phatr2/chr_11: chloroplast riboHeterocapsa tr 78    AAW79354    SignalP HMM: 0,999          Signal Peptide not recognised by TargetP   17   AHA-FTN       plastid
Ribulosephosp RPE          Calvin cycle 17204                         2             Phatr2/chr_1:1 ribulose-phosp Oceanobacter 74       ZP_01306515 0,284        0,823          0,026          S             3             17   ASA-FAP       plastid
Ribulosephosp RPE2         Calvin cycle 20015                         2             Phatr2/chr_7:5 ribulose-phosp Arabidopsis tha  54   NP_850495 0,023          0,770          0,405          S             4             23                 cytosol (signal peptide mispredicted?)
SedoheptuloseSBP           Calvin cycle 56467                         1             Phatr2/chr_1:1 sedoheptulose Ostreococcus 73        CAL53197    0,088        0,079          0,909          _             1             -                  cytosol
serine hydroxy SHMT        Serine synthes 18665                       3             Phatr2/chr_3:8 serine hydroxy Leishmania ma62       CAJ03206    0,067        0,067          0,934          _             1             -                  cytosol          TPS_106357 26031             1            Thaps3/chr_14:846637-848543
serine hydroxy SHMT        Serine synthes 54015                       3             Phatr2/chr_1:1 Serine hydroxySolanum tuber 68       P50433      0,78         0,061          0,174          M             2             20                 mitochondria TPS_111009 269942                1            Thaps3/chr_18:322361-324155
serine hydroxy SHMT        Serine synthes 17456                       3             Phatr2/chr_1:9 SHM4 (SERIN Arabidopsis tha     54   NP_193129 0,029          0,963          0,025          S             1             28   VRA-FSL       plastid          TPS_136932 26190             1            Thaps3/chr_4:513000-518856
tartronate sem Phatr23256  glyoxylate met 45141                       1             Phatr2/chr_6:3 PREDICTED: sTribolium casta34        XP_974950 0,951          0,043          0,06           M             1             10                 mitochondria no annotation 413                             Thaps3/chr_4:1833682-1834638
thioredoxin f Trx-f        Redox regulati 46280                       9             Phatr2/chr_9:8 similar to thioreCyanidioschyz 52    CMN279C     0,212        0,553          0,123          S             4             33   ATA-FAP       plastid          TrxF           270230                     Thaps3/chr_2:1827595-1828706
thioredoxin h Trx-h1       Redox regulati 56471                       9             Phatr2/chr_9:5 hypothetical pr Xenopus laevis61     NP_00109138 0,031        0,125          0,954          _             1             -                  cytosol          TrxH           41697                      Thaps3/chr_9:420656-421477
thioredoxin h Trx-h2       Redox regulati 48539                       9             Phatr2/chr_18: thioredoxin H Helicosporidium   50   AAU93947    0,067        0,901          0,055          S             1             21   GDA-VQG       periplastidic sp TrxH           5491                       Thaps3/chr_5:1356627-1357434
Thioredoxin h, Trx H       Redox regulati 48141                       9             Phatr2/chr_16: Thioredoxin (T Oryctolagus cu39      P08628      0,011        0,963          0,129          S             1             31   GYL-KSI       ER/pps, cytosol? (No Signal peptide recognised by SignalP's HMM, translation start unclear)
Thioredoxin h, Trx H       Redox regulati 56521                       9             Phatr2/chr_16: Thioredoxin (T Oryctolagus cu39      P08628      0,133        0,697          0,141          S             3             20   VLT-NKI       ER/pps, cytosol? (No Signal peptide recognised by SignalP's HMM, translation start unclear)
thioredoxin m Trx-m        Redox regulati 51357                       9             Phatr2/chr_1:5 Thioredoxin-1 Synechococcu 47        P12243      0,517        0,745          0,009          S             4             29   CSA-FCS       plastid          TrxM           ?                          ?
thioredoxin o Trx-o        Redox regulati 31720                       9             Phatr2/chr_1:7 thioredoxin      Flavobacteriale46   ZP_01105321 0,918        0,037          0,07           M             1             28                 mitochondria TrxO               4792                       Thaps3/chr_4:1936070-1936450
Thioredoxin re NADPH-FTR Redox regulati 56519                         1             Phatr2/chr_14: thioredoxin red Acidiphilium cr 45   YP_001235553SignalP HMM: 1,000          Signal Peptide not recognised by TargetP   24   VHA-RPV       ER/pps?
Thioredoxin y Trx Y        Redox regulati 43384                       9             Phatr2/chr_2:3 thioredoxin      Acaryochloris m36   YP_0015168830,015        0,986          0,034          S             1             25   IEG-FYR       plastid
thioredoxin y Trx-y        Redox regulati 33356                       9             Phatr2/chr_3:6 thioredoxin y Chlamydomon 34         AAO20257    0,433        0,683          0,02           S             4             17   AEA-FVH       plastid          TrxY           9699                       Thaps3/chr_14:135157-136034
threonine-ammTDH           Amino acid me 49047                        1             Phatr2/chr_20: threonine ammBurkholderia th55       YP_441106. 0,887         0,038          0,116          M             2             18                 mitochondria TPS_100902 42074                              Thaps3/chr_12:311890-313772
Transaldolase Phatr1_43839 Pentose phosp28222                         2             Phatr2/chr_11: transaldolase 1Rattus norvegi 60     NP_113999 0,059          0,074          0,933          _             1             -                  cytosol
Transaldolase TAL          Pentose phosp50313                         2             Phatr2/chr_28: transaldolase Methylobacillus42      YP_545764 0,495          0,751          0,02           S             4             16   SSG-FAP       plastid
Transketolase Phatr1_49038 Pentose phosp29260                         2             Phatr2/chr_15: ADL366Wp         Ashbya gossyp53     NP_983730 0,052          0,109          0,929          _             1             -                  cytosol
Transketolase Tkl          Pentose phosp50819                         2             Phatr2/chr_4:1 transketolase Dictyostelium d51      XP_645046 0,389          0,493          0,059          S             5             19   AQG-FTG       plastid
Triosephospha Phatr1_25343 Calvin cycle 18228                         2             Phatr2/chr_2:8 Triosephospha Carboxydother 35       ABB15245    0,072        0,875          0,077          S             2             18   ISA-FTV       plastid
Triosephosphate Isomerase Calvin cycle 50738                          2             Phatr2/chr_2:1 Triosephospha delta proteoba 44      EAT04169    0,292        0,760          0,032          S             3             17   ATA-FAP       plastid
triosephosphat TPI/GapC3   Glycolysis     25308        AF063804       6             Phatr2/chr_2:7 triosephosphat Odontella sine 81     AF063802    0,925        0,027          0,087          M             1             27                 mitochondria** [6]
triosephosphat Tpt1        Pyruvate meta 24610         AAO43194       2             Phatr2/chr_1:9 triose or hexos Plasmodium fa 33     XP_00135164 0,033        0,877          0,149          S             2             19   AFG-LNG       plastid* [3,4] (cleavage site m 7341                       Thaps3/chr_8:2392-3920
UDP-glucose dPhatr1_51016 Chrysolaminar 23639                         3             Phatr2/chr_25: hypothetical pr Trifolium prate 43   BAE71295    0,337        0,876          0,01           S             3             18   ASS-FGT       plastid          TPS_109581 42326                          Thaps3/chr_14:223721-225944
UDP-Glucose- UGP/PGM (PGM component) 50444                            3             Phatr2/chr_30: phosphoglucom    Arabidopsis tha57   NP_173732 0,08           0,119          0,867          _             2             -                  cytosol
UDP-Glucose- UGP/PGM (UGP component) 50444                            3             Phatr2/chr_30: UTP-glucose-1Leishmania inf 49       XP_0014649130,08         0,119          0,867          _             2             -                  cytosol          TPS_136908 262059                         Thaps3/chr_4:353468-354916



                                         unmapped sequences (not yet publicly available)                                                            Other prediction method than TargetP                                        conserved clea* experimental evidence via GFP Fusion
                                                                                                                                                                                                                                              ** experimental evidence via immunogold labeling

                                                                                                                                                                                                                                              *[1]          PMID: 123569 Apt KE, Zaslav In vivo charact J Cell Sci. 2002 Nov 1;115(Pt 21):4061-9.
                                                                                                                                                                                                                                              *[2]          PMID: 174840 Gruber A, Vug Protein targetinPlant Mol Biol. 2007 Jul;64(5):519-30.
                                                                                                                                                                                                                                              *[3]          PMID: 154614 Kilian O, Kroth Presequence aJ Mol Evol. 2004 Jun;58(6):712-21.
*[4]    PMID: 156341 Kilian O, Kroth Identification a Plant J. 2005 Jan;41(2):175-83.
*[5]    PMID: 162733 Kroth PG, Sch The peculiar d Curr Genet. 2005 Dec;48(6):389-400.
**[6]   PMID: 106778 Liaud MF, Lich Compartment- Mol Biol Evol. 2000 Feb;17(2):213-23.
*[7]    PMID: 158493 Tanaka Y, NakLocalization of Plant Physiol. 2005 May;138(1):207-17.

				
DOCUMENT INFO
Shared By:
Categories:
Tags:
Stats:
views:3
posted:3/25/2013
language:Unknown
pages:3