Docstoc
EXCLUSIVE OFFER FOR DOCSTOC USERS
Try the all-new QuickBooks Online for FREE.  No credit card required.

An Optimized Transform for ECG Signal Compression

Document Sample
An Optimized Transform for ECG Signal Compression Powered By Docstoc
					                                                    ACEEE Int. J. on Signal & Image Processing, Vol. 01, No. 03, Dec 2010
 


            An Optimized Transform for ECG Signal
                        Compression
                                            Mrs.S.O.Rajankar1, Dr. S.N. Talbar2
                                        1
                                         Sinhgad College of Engineering, Pune, India.
                                             Email: supriya.rajankar@gmail.com
                             2
                               S.G.G. S. College of Engineering and Technology, Nanded, India.
                                                 Email: sntalbar@yahoo.com

Abstract-A significant feature of the coming digital era is the   samples where inter-beat and, intra-beat correlation is
exponential increase in digital data, obtained from various       exploited. Some of the DDC algorithms are Turning point
signals specially the biomedical signals such as                  (TP), Amplitude zone time epoch coding (AZTEC), Co-
electrocardiogram (ECG), electroencephalogram (EEG),              ordinate reduction time encoding system (CORTES), Scan
electromyogram (EMG) etc. How to transmit or store these
signals efficiently becomes the most important issue. A digital
                                                                  along polynomial approximation (SAPA), and Non
compression technique is often used to solve this problem.        redundant template.       These algorithms suffer from
This paper proposed a comparative study of transform based        sensitiveness to sampling rate, quantization levels and high
approach for ECG signal compression. Adaptive threshold is        frequency interference. It fails to achieve high data rate
used on the transformed coefficients. The algorithm is tested     along with preservation of clinical information [10]. In
for 10 different records from MIT-BIH arrhythmia database         Transform based technique compressions are accomplished
and obtained percentage root mean difference as around            by applying an invertible orthogonal transform to the
0.528 to 0.584% for compression ratio of 18.963:1 to 23.011:1     signal. Due to its de-correlation and energy compaction
for DWT. Among DFT, DCT and DWT techniques, DWT has               properties the transform based methods achieve better
been proven to be very efficient for ECG signal coding.
Further improvement in the CR is possible by efficient
                                                                  compression ratios. The commonly used transforms for
entropy coding.                                                   data compression are DCT, DST, DFT and DWT. In
                                                                  parameter extraction methods a set of model
Index Terms: Electrocardiogram (ECG), Discrete Fourier            parameters/features are extracted from the original signal
Transform (DFT), Discrete Cosines Transform (DCT),                (model based) which involves methods like Linear term
Discrete Wavelet Transform (DWT) etc.                             prediction LTP) and analysis by synthesis (ASEC) [5],
                                                                  [10].
                      I.    INTRODUCTION                              In this paper different transform like DCT, DFT and
                                                                  DWT are studied for ECG signal compression. A threshold
    The ECG is a one of the important physiological signal
which depicts the electrical activity of a heart. ECG             based algorithm is proposed to achieve better compression.
processing is a topic of great interest in the scientific
community because based on the ECG’s a diagnosis is                                     II. TRANSFORM TECHNIQUES
done for detecting abnormalities in the heart functioning         A. Discrete Fourier Transform
[7].  The amount of ECG data grows with the increase of               Discrete Fourier Transform is a fundamental transform
number of channels, sampling rate, sample resolution,             in digital signal processing with applications in frequency
recording time, etc. As an example, with a sampling rate of       analysis, signal processing etc. The periodicity and
360 Hz, 11 bits/sample data resolution, a 24-h record             symmetry properties of DFT are useful for compression.
requires about 43 Mbytes per channel[5],[6]. Therefore an         The uth DFT coefficient of length N sequence {f(x)} is
effective data compression scheme for ECG signal is               defined as in “(1)”:
required in many practical applications such as ECG data
storage, ambulatory recording systems and ECG data                               N −1
transmission     over    telephone      line   or    digital          F (u ) = ∑ f ( x)e− j 2π ux / N u = 0,1,.... N − 1            (1)
telecommunication network for telemedicine. The main                             x =0
goal of electrocardiogram (ECG) data compression
techniques is to preserve the most useful diagnostic                  And its inverse transform (IDFT) as in “(2)”:
information while compressing a signal to an acceptable                
size. Lossless compression is the best choice as long as the                         N −1
                                                                                 1
compression ratio is acceptable, but it cannot usually offer          f ( x) =
                                                                                 N
                                                                                     ∑ F (u )e
                                                                                     u =0
                                                                                                 j 2π ux / N
                                                                                                               x = 0,1,....., N − 1  (2)
a satisfactory compression ratio (CR). To obtain significant
signal compression, lossy compression is preferable to a
                                                                     The number of complex multiplications and additions to
lossless compression.
                                                                  compute DFT is N2. Moreover fast algorithms exist that
    ECG data compression algorithms can be categorized as
                                                                  makes it possible to compute DFT efficiently [9]. This
direct data compression (DDC), Transform based and
                                                                  algorithm is popularly known as Fast Fourier Transform
Parameter extraction. Direct data compression is a time
                                                                  (FFT) which reduces the computations to N log2N.
domain compression algorithm which directly analyses
©2010 ACEEE                                                33                                                        
DOI: 01.IJSIP.01.03.224
 
                                                               ACEEE Int. J. on Signal & Image Processing, Vol. 01, No. 03, Dec 2010
 

B. Discrete Cosine Transform                                                       This multi-resolution wavelet algorithm decomposes a
   Discrete Cosine Transform is a basis for many signal                        signal f(t)with the help of φ (t ) and wavelet function
and image compression algorithms due to its high de-                           byψ (t).These functions together resolves the signal into its
correlation and energy compaction property. A discrete                         coarse and detail components[8],[10]. Thus using multi-
Cosine Transform of N sample is defined as in”(3)”:                            resolution idea, the signal f(t)is defined in terms of scale
                                                                               and wavelet coefficients, c(k) and d(k), respectively. That
                  2       N −1
                                        π (2 x + 1)u
                    C (u )∑ f ( x) cos[
                                                                               is,
      F (u ) =                                       ]
                 N        x =0              2N                                                  ∞                          ∞     ∞
      u = 0,1,..., N − 1,                                          (3)
                                                                                    f (t ) =   ∑
                                                                                               k =−∞
                                                                                                       c(k )φk (t ) + ∑         ∑ d ( j, k )ψ
                                                                                                                           j = 0 k =−∞
                                                                                                                                                  j ,k   (t )
                                                                                                                                                                (8)
                               1
                  Where C(u) =                    for u=0                          The first summation gives a function that is a low
                                2                                              resolution or a coarse approximation of f (t); the second one
                                                                               represents the higher or finer resolution to give detailed
                                      = 1,        otherwise.                   information of the signal.
   The function f(x) represents the value of xth samples of
                                                                                               III.    PERFORMANCE MEASUREMENT
input signals. F(u) represents a DCT coefficients. The
inverse DCT is defined in similar fashion as follows in                            The evaluation of performance for testing ECG
“(4)”:                                                                         compression algorithms includes three components:
                                                                               compression efficiency, reconstruction error and
                 2 N −1                  π (2 x + 1) u                         computational complexity. The compression efficiency is
    f ( x) =       ∑ C ( u ) F ( u ) cos[ 2 N ]
                N u =0
                                                                               given by compression ratio (CR). The compression ratio
                                                                               and the reconstruction error are usually dependent on each
    x = 0,1, ..., N − 1.                                           (4)
                                                                               other. The computational complexity component is part of
                                                                               the practical implementation consideration [6], [8].
   Since DCT belongs to family of DFT there are Fast
                                                                               A. Compression Measurement
DCT algorithms of computational complexity N log2N
similar to FFT[9].                                                                 All data compression algorithms minimizes data storage
                                                                               by reducing the redundancy wherever possible, thereby
C. Discrete Wavelet Transform                                                  increasing the compression ratio. The compression ratio
    Wavelet transforms have become an attractive and                           (CR) is defined as the ratio of the number of bits
efficient tool in many applications especially in coding and                   representing the original signal to the number of bits
compression of signals because of multi-resolution and                         required to store the compressed signal. A high
high-energy compaction properties. Wavelets allow both                         compression ratio is typically desired. A data compression
time and frequency analysis of signals simultaneously                          algorithm must also represent the data with acceptable
because of the fact that energy of wavelet is concentrated in                  fidelity while achieving high CR.
time and still possesses the wave like characteristics. As a
result wavelet representation provides a versatile                                                             boriginal
mathematical tool to analyze transients, non-stationary                                         CR =
                                                                                                           bcompressed
signals. Wavelets ψ a ,b (t ) are functions generated by one                                                                                                (9)

single basis function, called mother wavelet                   ψ (t)     by
                                                                               B. Distortion Measurement
dilation ‘a’ and translation ‘b’ represented as in”(5)”:
                                                                                   One of the most difficult problems in ECG compression
                                       1   ⎛ t −b ⎞                            and reconstruction is defining the error criterion that
                 ψ a ,b (t ) =            ψ⎜      ⎟                            measures the ability of the reconstructed signal to preserve
                                       |a| ⎝ a ⎠                   (5)         the relevant information. Different objective error measures
                                                                               namely; root mean square error (RMSE), percentage root
   If a and b are discredited then discrete wavelets can be                    mean difference (PRD), signal to noise ratio (SNR) are
represented as in”(6)”:                                                        used for calculation of reconstruction error. Among these
                                                                               error measures, the ECG processing is frequently measured
                  ψ j ,k (t ) = a0 j /2ψ (a0 j t − kb0 )
                                 −         −
                                                                               by the percentage root mean difference (PRD). It is most
                                                                   (6)
                                                                               commonly defined as:
where for dyadic sampling a0=2 and b0=1.
                                                                                                       ∑
                                                                                                                                         2
                                                                                                                ⎡ x ( n) − x ( n) ⎤
                                                                                                           N
                                                                                                           n =1 ⎣                 ⎦ ×100
           ψ j ,k (t ) = 2        ψ (2 t − k )
                             − j /2          −j
                                                      j, k ∈ Z                       PRD =
                                                                                                              ∑ n=1 x(n)
                                                                   (7)                                             N        2

                                                                                                                                                           (10)
©2010 ACEEE                                                               34                                                                   
DOI: 01.IJSIP.01.03.224
 
                                                     ACEEE Int. J. on Signal & Image Processing, Vol. 01, No. 03, Dec 2010
 

where x(n) and x ( n) are the values of the original and          waveform of the ECG signal. The CR and PRD values
                                                                  increases proportionally if the percentage threshold is
reconstructed samples, respectively, and N is the length of       increased as in “fig.2” and “fig.3”.The energy compaction
the window over which the PRD is calculated. The PRD              ability for different transform is shown in “fig.4”. With
indicates reconstruction fidelity by point wise comparison        4096 samples, for DFT method the PRD is around 0.222
with the original data. Despite their wide use, PRD do not        to 1.020% with the corresponding CR 4.362:1 to
indicate precisely the quality of signal's reconstruction and     15.814:1.For DCT the PRD is around 0.181 to 0.9346%
the decompressed signal has to be evaluated by visual             with CR 5.446:1 to 19.23:1.In case of DWT the PRD is
inspection also.                                                  around 0.214 to 0.584% with the CR 9.315:1 to 23.011:1.
                                                                  The “fig.5” explains about effect of number of samples on
                IV. CODING ALGORITHM                              CR.
    Transform based techniques because of their high                                            1400

compression ability have gained popularity. In this method                                      1200

the preprocessed signal is transformed to get the de-                                           1000
correlated coefficients. The thresholding or quantization of                                    800
transformed coefficients gives the actual compression,                                          600
                                                                                                       0     500      1000       1500   2000   2500     3000     3500       4000
which is lossy one. But it has good performance and low                                                                                  (a)
computational cost. In this paper the comparative study of                                      1400

DFT, DCT and DWT is carried out. Following are some                                             1200

important steps of the proposed algorithm.                                                      1000
   • Transform the ECG signal using DFT/DCT/DWT.                                                800
   • To achieve an adaptive threshold compute the                                               600
                                                                                                       0     500      1000       1500   2000   2500     3000     3500       4000
     maximum value of the transformed coefficients.                                                                                      (b)

   • Apply the threshold of a fix percentage based on
     absolute maximum values of the transform                     Figure 1. (a) Original and (b) Reconstructed signal of record number 207
     coefficients.                                                              with DWT (PRD=0.584% and CR=23.011:1)
   • After threshold operation to reconstruct the signal                                        25
     apply inverse transform.
    For wavelet based compression the signal is
                                                                                                20
decomposed up to fifth level using Bior4.4 wavelet. Bi-
orthogonal wavelets also allow perfect reconstruction of
                                                                            Compression ratio




                                                                                                15
the signal using linear phase filter banks which in turn
avoid reconstruction error at the beginning and at the end
of the signal.                                                                                  10
                                                                                                                                                                 DFT
                                                                                                                                                                 DCT
                                                                                                                                                                 DWT
              V. EXPERIMENTAL RESULTS                                                            5


    The data from MIT-BIH arrhythmia database is used to
                                                                                                 0
test the performance of the coding schemes. This database                                            0     0.01    0.02   0.03    0.04 0.05 0.06      0.07    0.08   0.09    0.1
                                                                                                                                     % Threshold
is sampled at 360Hz, and the resolution of each sample is
11 bits/samples. The algorithm is tested for 1024, 2048 &
                                                                             Figure 2. Comparison of CR for different transforms
4096 samples of the record numbers 100, 103, 105, 107,                                     (record number 207).
111, 200, 203, 205, 207 and 210. Table I summarizes the
results for record number 207 with maximum
threshold.”Fig.1” shows original and reconstructed

                                                  TABLE I.
     PERFORMANCE RESULTS FOR DIFFERENT TRANSFORM METHODS FOR RECORD NUMBER 207 WITH MAXIMUM THRESHOLD


         Number of                   DFT                              DCT                                                                      DWT
         samples             CR              PRD              CR                                     PRD                            CR                          PRD
            1024            10.343           0.405           12.337                                  0.172                         18.963                       0.528
            2048            11.702           0.683           14.027                                  0.623                         21.558                       0.561
            4096            15.815           1.021           19.230                                  0.935                         23.011                       0.584




©2010 ACEEE                                                  35                                                                                            
DOI: 01.IJSIP.01.03.224
 
                                                                                                                                                   ACEEE Int. J. on Signal & Image Processing, Vol. 01, No. 03, Dec 2010
 

                                                                1.4
                                                                                                                                                                                                  CONCLUSION

                                                                1.2
                                                                                                                                                                            For the transforms considered in this paper as the
                                                                                                DFT
                               Percentage Root Mean Diffrence                                   DCT
                                                                                                                                                                        percentage threshold is increased the number of
                                                                     1                          DWT                                                                     transformed coefficients with zero value gets increased
                                                                0.8
                                                                                                                                                                        which improves the CR but PRD also gets increased
                                                                                                                                                                        proportionally. As the PRD indicates reconstruction fidelity
                                                                0.6                                                                                                     the increase in its value is actually undesirable. In
                                                                0.4
                                                                                                                                                                        comparison with DFT and DCT the rise in PRD for DWT
                                                                                                                                                                        is less but CR is more, also energy compaction in DWT
                                                                0.2                                                                                                     more. So the DWT is found to be more suitable for ECG
                                                                     0
                                                                                                                                                                        signals compression. Also it is observed that as the number
                                                                         0        0.01     0.02     0.03     0.04 0.05 0.06   0.07   0.08   0.09   0.1
                                                                                                                % Threshold                                             of samples is increased the correlation among the samples
                                                                                                                                                                        and hence the CR is increased. It is possible to further
              Figure 3. Comparison of PRD for different transforms                                                                                                      increase the CR by using effective coding methods.
                            ( record number 207).
                                                                                                                                                                                                 REFERENCES
                                              100.002

                                                                                                                                                                        [1] Abo-Zahhad, M. and Rajoub B.A., “An effective coding
                                                                 100
                                                                                                                                                                            technique for the compression of one-dimensional signals
                                                            99.998
                                                                                                                                                                            using wavelets”, Medical Engineering and Physics, 2002, 24,
                                                                                                                                                                            pp.185–199.
           % Energy retained




                                                            99.996                                                                                                      [2] Leonardo Vidal Batista Elmar Uwe Kurt Melcher a, Luis
                                                                                                                                                                            Carlos Carvalho b, “Compression of ECG signals by
                                                            99.994                                                                                                          optimized quantization of discrete cosine transform
                                                                                                                                                                            coefficients”, Medical Engineering & Physics, 2001, 23, pp.
                                                            99.992                                  DFT
                                                                                                    DCT                                                                     127–134.
                                                                                                    DWT                                                                 [3] Gholam-Hosseini, H., Nazeran, H. and Moran, B., “ECG
                                                                99.99
                                                                                                                                                                            compression: evaluation of FFT, DCT, and WT
                                                            99.988                                                                                                          performance”.Australasian Physical & Engineering Sciences
                                                                             0      0.01     0.02     0.03     0.04 0.05 0.06    0.07   0.08   0.09      0.1
                                                                                                                  % Threshold                                               in Medicine,1998, 21, pp. 186–192.
       Figure 4. Comparison of % energy retained for different transforms                                                                                               [4] Jalaleddine SMS, Hutchens CG, Strattan R D, Coberly W
                           (record number 207)                                                                                                                              A., “ECG data compression technique-a unified approach”,
                                                                                                                                                                           IEEE transactions on Biomedical Eng 1990,37(4),pp.329-43
                                                                25                                                                                                      [5] Julian Cardenas-Barrera, Juan valentine Lorenzo-Ginori,
                                                                                                                                                                            “Mean-Shape vector quantizer for ECG Signal Compression”,
                                                                20                                                                                                           IEEE transactions on Biomedical Eng 1999, 46(1), pp. 62-70.
                                                                                                                                                                        [6] Shang-Gang Miaou,Heng-Lin Yen, Chih-Lung Lin, “Wavelet-
                                                                                                                                                                            Based ECG Compression Using Dynamic Vector
                        Compression ratio




                                                                15
                                                                                                                                                                            Quantization with Tree Code vectors in Single Codebook”,
                                                                                                                                                                            IEEE transactions on Biomedical Eng 2002, 49(7), pp. 671-
                                                                10                                                                                                          680.
                                                                                                                                1024 samples
                                                                                                                                2048 samples                            [7] W. J. Tompkins and J.G. Webster, “Biomedical Digital Signal
                                                                                                                                4096 samples
                                                                5
                                                                                                                                                                            processing” PHI-2006.
                                                                                                                                                                        [8] R.shanta selva Kumari, V Sadasivam, “A novel algorithm for
                                                                                                                                                                            wavelet based ECG signal coding”, Science Direct Computers
                                                                0
                                                                     0           0.01    0.02     0.03     0.04 0.05 0.06     0.07   0.08   0.09   0.1                      and Electrical Engineering, 2007, (33), pp. 186-194.
                                                                                                              % Threshold
                                                                                                                                                                        [9] Tinku Acharya and Ajoy K.Roy, “Image Processing Principles
    Figure 5. Comparison of CR for different number of samples with DWT                                                                                                     and Applications”, John Wiley.
                            (record number 207)                                                                                                                         [10] M. Sabarimalai Manikandan, S. Dandpat, “ Wavelet
                                                                                                                                                                              Threshold based ECG compression using USZZQ and
                                                                                                                                                                              Huffman coding of DSM”, Science Direct Biomedical Signal
                                                                                                                                                                              Processing and Control 2006, pp. 261-270.

 




©2010 ACEEE                                                                                                                                                        36                                                
DOI: 01.IJSIP.01.03.224
 

				
DOCUMENT INFO
Description: A significant feature of the coming digital era is the exponential increase in digital data, obtained from various signals specially the biomedical signals such as electrocardiogram (ECG), electroencephalogram (EEG), electromyogram (EMG) etc. How to transmit or store these signals efficiently becomes the most important issue. A digital compression technique is often used to solve this problem. This paper proposed a comparative study of transform based approach for ECG signal compression. Adaptive threshold is used on the transformed coefficients. The algorithm is tested for 10 different records from MIT-BIH arrhythmia database and obtained percentage root mean difference as around 0.528 to 0.584% for compression ratio of 18.963:1 to 23.011:1 for DWT. Among DFT, DCT and DWT techniques, DWT has been proven to be very efficient for ECG signal coding. Further improvement in the CR is possible by efficient entropy coding.