ST4 by xiaopangnv

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									Table S4. Frame corrections. Genes which have evidence from a peptide cluster for a frame change are listed with the number of peptides suggesting the cha
Locus               Peps Out of frame       Full Fasta Header
AT1G11905           3                       >AT1G11905.1 | Symbols: | similar to unknown protein [Arabidopsis thaliana]
                                            (TAIR:AT5G42570.1); similar to unknown protein [Oryza sativa (japonica cultivar-
                                            group)] (GB:BAD69146.1); similar to Os06g0367500 [Oryza sativa (japonica
                                            cultivar-group)] (GB:NP_001057612.1); similar to Os05g0272900 [Oryza sativa
                                            (japonica cultivar-group)] (GB:NP_001055067.1); contains domain BCR-
                                            ASSOCIATED PROTEIN, BAP (PTHR12701:SF1); contains domain BCR-
                                            ASSOCIATED PROTEIN, BAP (PTHR12701) | chr1:4014957-4016242
                                            FORWARD
AT1G15120            3                        >AT1G15120.1 | Symbols: | ubiquinol-cytochrome C reductase complex 7.8 kDa
                                              protein, putative / mitochondrial hinge protein, putative | chr1:5203086-5203892
                                              FORWARD
AT1G16840            2                        >AT1G16840.4 | Symbols: | similar to unknown protein [Arabidopsis thaliana]
                                              (TAIR:AT1G78890.1); similar to At1g16840/F17F16.27-related [Medicago
                                              truncatula] (GB:ABE84583.1) | chr1:5763104-5763977 REVERSE

AT1G18580            2                        >AT1G18580.1 | Symbols: GAUT11 | GAUT11 (Galacturonosyltransferase 11);
                                              polygalacturonate 4-alpha-galacturonosyltransferase | chr1:6396137-6397383
                                              FORWARD
AT1G19130            10                       >AT1G19130.1 | Symbols: | similar to unknown protein [Oryza sativa (japonica
                                              cultivar-group)] (GB:BAD36638.1); similar to Os08g0455800 [Oryza sativa
                                              (japonica cultivar-group)] (GB:NP_001061963.1); contains InterPro domain
                                              Protein of unknown function DUF985; (InterPro:IPR009327) | chr1:6609487-
                                              6610546 REVERSE
AT1G21695            2                        >AT1G21695.1 | Symbols: | hydroxyproline-rich glycoprotein family protein |
                                              chr1:7619121-7619774 FORWARD
AT1G29560            3                        >AT1G29560.1 | Symbols: | similar to zinc finger protein-related [Arabidopsis
                                              thaliana] (TAIR:AT1G29570.1); similar to glycoprotein 96-92, putative
                                              [Leishmania major] (GB:CAJ05675.1) | chr1:10332633-10335496 FORWARD

AT1G29600            2                        >AT1G29600.1 | Symbols: | zinc finger (CCCH-type) family protein |
                                              chr1:10344032-10345637 FORWARD
AT1G53705            3                        >AT1G53705.1 | Symbols: | similar to unknown protein [Arabidopsis thaliana]
                                              (TAIR:AT3G29750.1); contains InterPro domain Peptidase aspartic, catalytic;
                                              (InterPro:IPR009007) | chr1:20054143-20055119 REVERSE

AT1G56100            11                       >AT1G56100.1 | Symbols: | pectinesterase inhibitor domain-containing protein |
                                              chr1:20984034-20987644 REVERSE
AT1G63500            2                        >AT1G63500.1 | Symbols: | protein kinase-related | chr1:23559963-23562066
                                              FORWARD
AT1G63820            2                        >AT1G63820.1 | Symbols: | similar to unknown protein [Arabidopsis thaliana]
                                              (TAIR:AT5G41380.1); similar to CCT [Medicago truncatula] (GB:ABD32315.1);
                                              contains InterPro domain CCT; (InterPro:IPR010402) | chr1:23686192-23687713
                                              REVERSE
AT1G65090            2                        >AT1G65090.1 | Symbols: | similar to unknown protein [Arabidopsis thaliana]
                                              (TAIR:AT5G36100.1); similar to unknown [Hyacinthus orientalis]
                                              (GB:AAS21015.1) | chr1:24184850-24186331 REVERSE
AT1G67350            9                        >AT1G67350.1 | Symbols: | unknown protein | chr1:25239580-25240446
                                              FORWARD
AT1G71360            2                        >AT1G71360.1 | Symbols: | similar to unknown protein [Arabidopsis thaliana]
                                              (TAIR:AT1G22882.1); similar to membrane protein-like [Cucumis melo]
                                              (GB:AAU04771.1); contains InterPro domain Galactose-binding like;
                                              (InterPro:IPR008979); contains InterPro domain Sad1/UNC-like, C-terminal;
                                              (InterPro:IPR012919) | chr1:26895876-26897255 REVERSE
AT1G71530            3                        >AT1G71530.1 | Symbols: | protein kinase family protein | chr1:26943428-
                                              26945241 FORWARD
AT1G72840            2                        >AT1G72840.1 | Symbols: | ATP binding / protein binding / transmembrane
                                              receptor | chr1:27413681-27417146 REVERSE
AT1G76820   14   >AT1G76820.1 | Symbols: | similar to translation initiation factor [Arabidopsis
                 thaliana] (TAIR:AT1G76720.1); similar to translation initiation factor if-2 [Aedes
                 aegypti] (GB:EAT38917.1) | chr1:28842690-28843490 FORWARD

AT1G79920   7    >AT1G79920.1 | Symbols: | heat shock protein 70, putative / HSP70, putative |
                 chr1:30064195-30067117 REVERSE
AT2G02730   3    >AT2G02730.1 | Symbols: | similar to bZIP family transcription factor
                 [Arabidopsis thaliana] (TAIR:AT1G27000.1); similar to bZIP transcription factor
                 bZIP109 [Glycine max] (GB:ABI34660.1); contains InterPro domain Protein of
                 unknown function DUF1664; (InterPro:IPR012458) | chr2:765279-767335
                 REVERSE
AT2G02810   2    >AT2G02810.1 | Symbols: ATUTR1, UTR1 | ATUTR1/UTR1 (UDP-GALACTOSE
                 TRANSPORTER 1); UDP-galactose transporter/ UDP-glucose transporter/
                 pyrimidine nucleotide sugar transporter | chr2:801642-803288 FORWARD

AT2G03600   2    >AT2G03600.1 | Symbols: ATUPS3 | ATUPS3 (Arabidopsis thaliana ureide
                 permease 3) | chr2:1097291-1098760 FORWARD
AT2G07280   2    >AT2G07280.1 | Symbols: | similar to Ulp1 protease family protein [Arabidopsis
                 thaliana] (TAIR:AT4G03970.1) | chr2:3026395-3029071 FORWARD

AT2G09865   2    >AT2G09865.1 | Symbols: | similar to unknown protein [Arabidopsis thaliana]
                 (TAIR:AT1G38380.1) | chr2:3736626-3738125 REVERSE
AT2G24680   2    >AT2G24680.1 | Symbols: | transcriptional factor B3 family protein |
                 chr2:10500966-10505410 REVERSE
AT2G30120   3    >AT2G30120.1 | Symbols: | transcription factor | chr2:12868409-12868939
                 REVERSE
AT2G34200   2    >AT2G34200.1 | Symbols: | zinc finger (C3HC4-type RING finger) family protein |
                 chr2:14448184-14448961 FORWARD
AT3G06290   2    >AT3G06290.1 | Symbols: | similar to SAC3/GANP family protein [Arabidopsis
                 thaliana] (TAIR:AT3G54380.1); similar to Nuclear protein export factor (ISS)
                 [Ostreococcus tauri] (GB:CAL50253.1); contains InterPro domain SAC3/GANP;
                 (InterPro:IPR005062) | chr3:1899129-1907303 REVERSE

AT3G08770   3    >AT3G08770.1 | Symbols: LTP6 | LTP6 (Lipid transfer protein 6); lipid binding |
                 chr3:2664355-2664790 REVERSE
AT3G09660   2    >AT3G09660.1 | Symbols: | minichromosome maintenance family protein / MCM
                 family protein | chr3:2961319-2966171 REVERSE
AT3G19290   2    >AT3G19290.1 | Symbols: AREB2, ABF4 | ABF4 (ABRE BINDING FACTOR 4);
                 DNA binding / transcription factor/ transcriptional activator | chr3:6687962-
                 6689790 FORWARD
AT3G22240   5    >AT3G22240.1 | Symbols: | unknown protein | chr3:7863755-7864507
                 REVERSE
AT3G29796   3    >AT3G29796.1 | Symbols: | unknown protein | chr3:11711040-11715507
                 FORWARD
AT3G47836   3    >AT3G47836.1 | Symbols: | unknown protein | chr3:17661334-17662634
                 REVERSE
AT3G55970   2    >AT3G55970.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family
                 protein | chr3:20777949-20780243 REVERSE
AT4G00340   0    >AT4G00340.1 | Symbols: RLK4 | RLK4 (RECEPTOR-LIKE PROTEIN KINASE
                 4); sugar binding | chr4:148958-150227 FORWARD
AT4G01925   2    >AT4G01925.1 | Symbols: | DC1 domain-containing protein | chr4:833241-
                 834634 REVERSE
AT4G02260   2    >AT4G02260.3 | Symbols: AT-RSH1, RSH1 | RSH1 (RELA-SPOT HOMOLOG);
                 catalytic | chr4:985451-990697 FORWARD
AT4G02700   2    >AT4G02700.1 | Symbols: SULTR3;2 | SULTR3;2 (SULFATE TRANSPORTER
                 3;2); sulfate transporter | chr4:1189062-1193325 FORWARD

AT4G05631   2    >AT4G05631.1 | Symbols: | unknown protein | chr4:2990003-2992615
                 REVERSE
AT4G14240   2    >AT4G14240.1 | Symbols: | similar to CBS domain-containing protein-related
                 [Arabidopsis thaliana] (TAIR:AT4G14230.1); similar to Os05g0395300 [Oryza
                 sativa (japonica cultivar-group)] (GB:NP_001055462.1); similar to unknown
                 protein [Oryza sativa (japonica cultivar-group)] (GB:AAT07635.1); contains
                 InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550);
                 contains InterPro domain CBS; (InterPro:IPR000644) | chr4:8204707-8207268
                 REVERSE


AT4G15020   0    >AT4G15020.1 | Symbols: | similar to DNA binding / protein dimerization
                 [Arabidopsis thaliana] (TAIR:AT3G22220.2); similar to Os03g0822900 [Oryza
                 sativa (japonica cultivar-group)] (GB:NP_001051738.1); similar to hypothetical
                 protein [Oryza sativa (japonica cultivar-group)] (GB:AAO18451.1); contains
                 InterPro domain Viral capsid/hemagglutinin protein; (InterPro:IPR008980);
                 contains InterPro domain Protein of unknown function DUF659;
                 (InterPro:IPR007021) | chr4:8576125-8576994 FORWARD


AT4G15770   0    >AT4G15770.1 | Symbols: | 60S ribosome subunit biogenesis protein, putative |
                 chr4:8978334-8978624 FORWARD
AT4G15930   2    >AT4G15930.1 | Symbols: | dynein light chain, putative | chr4:9036419-9037840
                 FORWARD
AT4G16260   4    >AT4G16260.1 | Symbols: | glycosyl hydrolase family 17 protein | chr4:9200310-
                 9201457 REVERSE
AT4G16380   0    >AT4G16380.1 | Symbols: | metal ion binding | chr4:9254659-9255527
                 FORWARD
AT4G17120   2    >AT4G17120.1 | Symbols: | similar to C2 domain-containing protein [Arabidopsis
                 thaliana] (TAIR:AT1G48090.2); similar to unknown protein [Oryza sativa]
                 (GB:AAG60185.1); similar to Os10g0565300 [Oryza sativa (japonica cultivar-
                 group)] (GB:NP_001065419.1); contains InterPro domain C2 calcium/lipid-binding
                 region, CaLB; (InterPro:IPR008973) | chr4:9615997-9624221 REVERSE


AT4G17245   3    >AT4G17245.1 | Symbols: | zinc finger (C3HC4-type RING finger) family protein |
                 chr4:9669395-9669895 FORWARD
AT4G19460   2    >AT4G19460.1 | Symbols: | glycosyl transferase family 1 protein |
                 chr4:10610433-10611983 REVERSE
AT4G20310   2    >AT4G20310.1 | Symbols: | metalloendopeptidase/ protein binding |
                 chr4:10961649-10963293 FORWARD
AT4G22850   2    >AT4G22850.1 | Symbols: | similar to unknown protein [Arabidopsis thaliana]
                 (TAIR:AT4G12000.1); similar to At1g12450-related [Medicago truncatula]
                 (GB:ABE81486.1); contains domain UNCHARACTERIZED (PTHR12677) |
                 chr4:11994205-11995952 FORWARD
AT4G23760   3    >AT4G23760.1 | Symbols: | unknown protein | chr4:12379384-12382826
                 FORWARD
AT4G36600   2    >AT4G36600.1 | Symbols: | late embryogenesis abundant domain-containing
                 protein / LEA domain-containing protein | chr4:17263726-17264974 FORWARD

AT4G36780   2    >AT4G36780.1 | Symbols: | brassinosteroid signalling positive regulator-related |
                 chr4:17333282-17334217 REVERSE
AT4G36800   4    >AT4G36800.1 | Symbols: RCE1 | RCE1 (RUB1 CONJUGATING ENZYME 1);
                 small protein conjugating enzyme | chr4:17341533-17342152 REVERSE

AT4G39420   2    >AT4G39420.1 | Symbols: | unknown protein | chr4:18339725-18342147
                 FORWARD
AT5G02160   5    >AT5G02160.1 | Symbols: | similar to hypothetical protein [Solanum
                 lycopersicum] (GB:BAD95796.1) | chr5:426389-426895 FORWARD
AT5G06350   2    >AT5G06350.1 | Symbols: | binding | chr5:1938782-1944198 FORWARD
AT5G07670   2    >AT5G07670.1 | Symbols: | F-box family protein | chr5:2430422-2432066
                 FORWARD
AT5G13010   2    >AT5G13010.1 | Symbols: EMB3011 | EMB3011 (EMBRYO DEFECTIVE 3011);
                 RNA helicase | chr5:4122750-4128663 FORWARD
AT5G13850   16   >AT5G13850.1 | Symbols: NACA3 | nascent polypeptide-associated complex
                 (NAC) domain-containing protein | chr5:4471364-4472544 FORWARD
AT5G26680   3   >AT5G26680.1 | Symbols: | endonuclease, putative | chr5:9311885-9315461
                REVERSE
AT5G32070   2   >AT5G32070.1 | Symbols: | similar to AT hook motif-containing protein-related
                [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein
                31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain
                Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285) |
                chr5:11464897-11466782 FORWARD
AT5G39570   5   >AT5G39570.1 | Symbols: | unknown protein | chr5:15861367-15863188
                FORWARD
AT5G43530   2   >AT5G43530.1 | Symbols: | SNF2 domain-containing protein / helicase domain-
                containing protein / RING finger domain-containing protein | chr5:17506555-
                17512058 FORWARD
AT5G43580   2   >AT5G43580.1 | Symbols: | serine-type endopeptidase inhibitor | chr5:17525311-
                17525803 REVERSE
AT5G44280   2   >AT5G44280.1 | Symbols: | protein binding / zinc ion binding | chr5:17853342-
                17856341 REVERSE
AT5G46540   2   >AT5G46540.1 | Symbols: | (P-GLYCOPROTEIN 7, PGP7); ATPase, coupled to
                transmembrane movement of substances | chr5:18894419-18899574 REVERSE

AT5G58790   2   >AT5G58790.1 | Symbols: | unknown protein | chr5:23762553-23762709
                FORWARD
AT5G59980   3   >AT5G59980.1 | Symbols: | RNase P subunit p30 family protein | chr5:24164433-
                24166618 FORWARD
the number of peptides suggesting the change, comments on the nature of the change, and information about the gene.

								
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