Dataset S1 _XLSX_ - PNAS

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Dataset S1 _XLSX_ - PNAS Powered By Docstoc
					hsa-mir-451
gcccaagaagctctctgctcagcctgtcacaacctactgactgccagggcaCTTGGGAATGGCAAGGAAACCGTTACCATTACTGAGTTTAGTAAT
..((.((.((...(((((((((((((...((......)).((.((..((((((((((.((((((((..(((((((((((((((((....)))))))))))))))))..)))))))).))))).....))))).)).))......))))...)))).))))))).))))....
...................................................................AAACCGTTACCATTACTGAGTTT..............................................................................
...................................................................AAACCGTTACCATTACTGAGTTTA............................................................................
...................................................................AAACCGTTACCATTACTGAGTT.................................................................................
...................................................................AAACCGTTACCATTACTGAGTTTAGT.......................................................................
...................................................................AAACCGTTACCATTACTGAGT...................................................................................
...................................................................AAACCGTTACCATTACTGAGTTTAGTAAT................................................................
...................................................................AAACCGTTACCATTACTGAGTTTAG.........................................................................
...................................................................AAACCGTTACCATTACTGAGTTTAGTAA..................................................................
...................................................................AAACCGTTACCATTACTGAG.....................................................................................
....................................................................................GAGTTTAGTAATGGTAATGGTTCTC........................................................
...................................................................................TGAGTTTAGTAATGGTAATGGTTCTC.......................................................
.......................................................................................TTTAGTAATGGTAATGGTTCTC.............................................................
................................................................................TACTGAGTTTAGTAATGGTAATGGTTCT.....................................................
...................................................................AAACCGTTACCATTACTGAGTTTAGTA.....................................................................
...................................................................................TGAGTTTAGTAATGGTAATGGTTCT.........................................................
...................................................................AAACCGTTACCATTACTGA......................................................................................
.................................................................................ACTGAGTTTAGTAATGGTAATGGTTCTC....................................................
.....................................................................................AGTTTAGTAATGGTAATGGTTCTC..........................................................
................................................................................TACTGAGTTTAGTAATGGTAATGGTTCTC..................................................
..................................................................................CTGAGTTTAGTAATGGTAATGGTTCTC.....................................................
..................................................................................CTGAGTTTAGTAATGGTAATGGTTCT........................................................
...................................................................AAACCGTTACCATTACTGAGTTTAGTAATG.............................................................
....................................................................AACCGTTACCATTACTGAGTTT................................................................................
.................................................................................ACTGAGTTTAGTAATGGTAATGGTTCT......................................................
....................................................................................GAGTTTAGTAATGGTAATGGTTCTCT......................................................
..............................................................................................ATGGTAATGGTTCTCTTGCTAT......................................................
.......................................................................................TTTAGTAATGGTAATGGTTCT................................................................
........................................................................................TTAGTAATGGTAATGGTTCTC..............................................................
.........................................................................................TAGTAATGGTAATGGTTCTC...............................................................
..................................................................GAAACCGTTACCATTACTGAGTTTA..........................................................................
...................................................................AAACCGTTACCATTACTG.......................................................................................
....................................................................AACCGTTACCATTACTGAGTTTAG...........................................................................
....................................................................AACCGTTACCATTACTGAGTTTA.............................................................................
....................................................................AACCGTTACCATTACTGAGT....................................................................................
.......................................................................CGTTACCATTACTGAGTTTA.................................................................................
.......................................................................CGTTACCATTACTGAGTTT..................................................................................
........................................................................GTTACCATTACTGAGTTTAG................................................................................
........................................................................GTTACCATTACTGAGTTTA.................................................................................
................................................................................TACTGAGTTTAGTAATGGTAATGGTTC.......................................................
..................................................................................CTGAGTTTAGTAATGGTAATG....................................................................
...................................................................................TGAGTTTAGTAATGGTAATGGTTC............................................................
...................................................................................TGAGTTTAGTAATGGTAATGGT................................................................
....................................................................................GAGTTTAGTAATGGTAATGGTTCT...........................................................
....................................................................................GAGTTTAGTAATGGTAATGGTTC.............................................................
....................................................................................GAGTTTAGTAATGGTAAT......................................................................
.....................................................................................AGTTTAGTAATGGTAATGGTTCTCT.......................................................
........................................................................................TTAGTAATGGTAATGGTTCT................................................................
............................................................................................TAATGGTAATGGTTCTCTTGCTA.....................................................
.............................................................................................AATGGTAATGGTTCTCTTGCTA.......................................................
..............................................................................................ATGGTAATGGTTCTCTTGCTA........................................................
..............................................................................................ATGGTAATGGTTCTCTTGCT..........................................................
...............................................................................................TGGTAATGGTTCTCTTGCTATACC................................................
TTACTGAGTTTAGTAATGGTAATGGTTCTCTTGCTATACCCAGAaaacgtgccaggaagagaactcaggaccctgaagcagactactggaagg
         Length Total GSM494809-Normal_PBMC-1 GSM494810-Normal_PBMC-2GSM494811-K562
              23 5048                    1845                    185          3015
              24  778                     314                     19           445
              22  508                      96                    195           217
              26  183                      85                                   98
              21  183                      13                    148            22
              29  119                      22                                   97
              25    80                     37                      2            41
              28    36                      3                                   33
              20    31                      3                     23             5
              25    31                                                          31
              26    25                      1                                   24
              22    21                     19                                    2
              28    17                                                          17
              27    14                      3                                   11
              25    13                                                          13
              19    12                      1                      2             9
              28    11                                                          11
              24     6                      1                                    5
              29     4                                                           4
              27     4                                                           4
              26     4                                                           4
              30     3                                                           3
              22     3                      3
              27     3                                                           3
              26     3                                                           3
              22     3                      3
              21     2                      2
              21     2                      2
              20     2                      2
              25     1                                                           1
              18     1                      1
              24     1                      1
              23     1                      1
              20     1                                             1
              20     1                      1
              19     1                                                           1
              20     1                      1
              19     1                                                           1
              27     1                                                           1
              21     1                                                           1
              24     1                                                           1
              22     1                                                           1
              24     1                                                           1
              23     1                                                           1
              18     1                                                           1
              25     1                                                           1
              20     1                                                           1
              23     1                      1
              22     1                      1
              21     1                      1
20   1   1
24   1   1
accctgaagcagactactggaagg
           GSM494812-HL60
                         3
mmu-mir-451
gtacacgggctcactgctcggcctaatcaagcctgctgacagctgtggcaCTTGGGAATGGCGAGGAAACCGTTACCATTACTGAGTTTAGTAATG
.....(((((.....)))))...............((..((((..((((((.(((((..((((((..(((((((((((((((((....)))))))))))))))))..))))))..)))))......))))))......((((.........)))).....))))..))....
..................................................................AAACCGTTACCATTACTGAGTTT...............................................................................
..................................................................AAACCGTTACCATTACTGAGTT..................................................................................
..................................................................AAACCGTTACCATTACTGAGTTTAG..........................................................................
..................................................................AAACCGTTACCATTACTGAGTTTA.............................................................................
..................................................................AAACCGTTACCATTACTGAGTTTAGT........................................................................
.......................................................................GTTACCATTACTGAGTTT...................................................................................
..................................................................AAACCGTTACCATTACTGAGT....................................................................................
...................................................................AACCGTTACCATTACTGAGTTT.................................................................................
......................................................................CGTTACCATTACTGAGTTT...................................................................................
..................................................................AAACCGTTACCATTACTGAGTTTAGTA......................................................................
....................................................................ACCGTTACCATTACTGAGTTT..................................................................................
.....................................................................CCGTTACCATTACTGAGTTT...................................................................................
.......................................................................GTTACCATTACTGAGTTTAG.................................................................................
.......................................................................GTTACCATTACTGAGTTTA..................................................................................
..................................................................AAACCGTTACCATTACTGAG......................................................................................
..................................................................AAACCGTTACCATTACTGAGTTTAGTAAT.................................................................
.......................................................................GTTACCATTACTGAGTTTAGT...............................................................................
..................................................................AAACCGTTACCATTACTGA.......................................................................................
.....................................................................CCGTTACCATTACTGAGTT....................................................................................
.........................................................................TACCATTACTGAGTTTAG.................................................................................
......................................................................CGTTACCATTACTGAGTT....................................................................................
..........................................................................ACCATTACTGAGTTTAGT................................................................................
......................................................................CGTTACCATTACTGAGTTTA..................................................................................
...................................................................AACCGTTACCATTACTGAGTTTA..............................................................................
...................................................................AACCGTTACCATTACTGAGTT...................................................................................
...................................................................AACCGTTACCATTACTGAGTTTAG............................................................................
....................................................................ACCGTTACCATTACTGAGTT....................................................................................
.....................................................................CCGTTACCATTACTGAGTTTAG..............................................................................
....................................................................ACCGTTACCATTACTGAGTTTAG.............................................................................
......................................................................CGTTACCATTACTGAGTTTAGT..............................................................................
......................................................................CGTTACCATTACTGAGTTTAG................................................................................
.........................................................................TACCATTACTGAGTTTAGT................................................................................
...................................................................AACCGTTACCATTACTGAGTTTAGT.........................................................................
....................................................................ACCGTTACCATTACTGAGTTTA................................................................................
.....................................................................CCGTTACCATTACTGAGTTTA.................................................................................
..................................................................AAACCGTTACCATTACTG........................................................................................
..................................................................AAACCGTTACCATTACTGAGTTTAGTAA...................................................................
...................................................................AACCGTTACCATTACTGAGT.....................................................................................
....................................................................ACCGTTACCATTACTGAGTTTAGT...........................................................................
.....................................................................CCGTTACCATTACTGAGT.....................................................................................
.....................................................................CCGTTACCATTACTGAGTTTAGT............................................................................
..................................................................AAACCGTTACCATTACTGAGTTTAGTAATG..............................................................
....................................................................ACCGTTACCATTACTGAGT.....................................................................................
.........................................................................TACCATTACTGAGTTTAGTA...............................................................................
...................................................................................GAGTTTAGTAATGGTAACGGTTC.............................................................
....................................................................ACCGTTACCATTACTGAGTTTAGTAAT....................................................................
......................................................................CGTTACCATTACTGAGTTTAGTA...........................................................................
.......................................................................GTTACCATTACTGAGTTTAGTA.............................................................................
.........................................................................TACCATTACTGAGTTTAGTAAT...........................................................................
..........................................................................ACCATTACTGAGTTTAGTAAT.............................................................................
............................................................................CATTACTGAGTTTAGTAA..............................................................................
......................................................................................TTTAGTAATGGTAACGGTTC..................................................................
.........................................................................................AGTAATGGTAACGGTTCT.................................................................
.............................................................................................ATGGTAACGGTTCTCTTGCTGCT...................................................
..............................................................................................TGGTAACGGTTCTCTTGCTG..........................................................
TACTGAGTTTAGTAATGGTAACGGTTCTCTTGCTGCTCCCACAaactgtgccaagaagagctcatgaccctggagcagactgctggaagaaaa
         Length Total                               GSM433295 18.5 dpc_homo_tdrd1-KO
                         GSM433294 18.5dpc_hetero_tdrd1-KO
              23 38007                        8126                              22924
              22   5387                       1073                               2376
              25   4106                       1458                               1906
              24   2866                        752                               1786
              26   1959                        726                               1094
              18     569                       327                                175
              21     555                       137                                101
              22     160                         38                                92
              19     137                         76                                40
              27     130                         35                                84
              21     108                         35                                46
              20      94                         37                                38
              20      71                         29                                25
              19      62                         37                                18
              20      61                         26                                17
              29      58                         16                                42
              21      31                         11                                18
              19      25                         18                                 6
              19      25                         15                                 5
              18      25                         11                                12
              18      22                         10                                 5
              18      22                         15                                 6
              20      17                         11                                 5
              23      16                          7                                 8
              21      16                          4                                 5
              24      15                          3                                 6
              20      15                          3                                10
              22      14                          1                                 3
              23      13                          1                                 9
              22      12                          4                                 4
              21      11                          4                                 5
              19      10                          8                                 2
              25       8                                                            8
              22       7                          2                                 5
              21       7                          3                                 3
              18       6                          4                                 2
              28       5                          2                                 3
              20       4                          2
              24       4                                                            4
              18       4                          2                                 1
              23       3                          2                                 1
              30       2                                                            2
              19       2                          1                                 1
              20       2                          2
              23       2                                                            2
              27       1                                                            1
              23       1                                                            1
              22       1                                                            1
              22       1                          1
              21       1                                                            1
18   1
20   1
18   1   1
23   1   1
20   1   1
gaccctggagcagactgctggaagaaaa
           GSM43328818 dpp_hetero_tdrd6-KO GSM261957 fully grown oocytes
                                        3399                           3558
                                         737                           1201
                                         412                             330
                                         182                             146
                                          86                              53
                                          19                              48
                                          65                             252
                                          26                               4
                                          10                              11
                                          11
                                          24                               3
                                          10                               9
                                           8                               9
                                                                           7
                                           2                              16

                                           2
                                                                          1
                                           5
                                           2
                                           1                              6
                                           1
                                           1
                                           1
                                           6                              1
                                           6
                                           2
                                           8                              2
                                           2                              1
                                           4
                                                                          2



                                           1


                                           2

                                           1
1
    1
mmu-mir-451
atcaagcctgctgacagctgtggcaCTTGGGAATGGCGAGGAAACCGTTACCATTACTGAGTTTAGTAATGGTAACGGTTCTCTTGCT
...........................(((((.((((((((.(((((((((((((((((....))))))))))))))))).)))))))).)))))...........................
..........................................AAACCGTTACCATTACTGAGTTTAGTAAT....................................................
..........................................AAACCGTTACCATTACTGAGTTTAGTAA.....................................................
..........................................AAACCGTTACCATTACTGAGTTTAGTA......................................................
................AGCTGTGGCACTTGGGAATGGCGAGG.................................................................................
..........................................AAACCGTTACCATTACTGAGTTTAGT.......................................................
..........................................AAACCGTTACCATTACTGAGTTTAG........................................................
..........................................AAACCGTTACCATTACTGAGTTTA.........................................................
..................CTGTGGCACTTGGGAATGGCGAGG.................................................................................
.....................TGGCACTTGGGAATGGCGAGGAA...............................................................................
...................TGTGGCACTTGGGAATGGCGAGG.................................................................................
..........................................AAACCGTTACCATTACTGAGTTT..........................................................
....................GTGGCACTTGGGAATGGCGAGG.................................................................................
..........................................AAACCGTTACCATTACTGAGTT...........................................................
...........................................AACCGTTACCATTACTGAGTT...........................................................
..........................................AAACCGTTACCATTACTGAGT............................................................
....................GTGGCACTTGGGAATGGCGAG..................................................................................
.....................TGGCACTTGGGAATGGCGAGG.................................................................................
...............................................GTTACCATTACTGAGTTTAG........................................................
..........................................AAACCGTTACCATTACTGAG.............................................................
......................GGCACTTGGGAATGGCGAGG.................................................................................
.......................GCACTTGGGAATGGCGAGG.................................................................................
..........................................AAACCGTTACCATTACTGA..............................................................
...............................................GTTACCATTACTGAGTTTA.........................................................
..............................................CGTTACCATTACTGAGTT...........................................................
TAACGGTTCTCTTGCTGCTCCCACAaactgtgccaagaagagctcatgac
        Length                    Blast hits
                   Normalized reads            Library countsGSM539835 pro B cellsGSM539836 pre B cells
                29              4            1             2                   0           0
                28              1            1             1                   0           0
                27              4            1             2                   0           0
                26              1            1             1                   0           0
                26             40            1            12                  12           6
                25             30            1            11                   0           0
                24             99            1            15                  25          26
                24              2            1             1                   2           0
                23              1            1             1                   0           1
                23              1            1             1                   0           1
                23           431             1            29                  36          66
                22              1            1             1                   0           0
                22           163             1            23                   3           7
                21              1            1             1                   0           0
                21             14            1             8                   0           0
                21              1            1             1                   0           0
                21              3            1             2                   2           1
                20              1            1             1                   0           0
                20             19            1            12                   2           1
                20              1            1             1                   1           0
                19              1            1             1                   0           0
                19              8            1             8                   0           0
                19              2            1             1                   0           0
                18              1            1             1                   0           0
           GSM539838 mature B cells (spleen) replicate B cellsB(spleen) replicate 2 activatedcells activated i
GSM539837 immature B cells                     GSM539840 GSM539841 BGSM539842 B LPS/IL4 replicat
                                GSM539839 mature 1                              in vitro with in vitro with LP
                                                                cells activatedcells
         0                    1              0              0               0              0
         1                    0              0              0               0              0
         3                    0              0              0               0              0
         0                    1              0              0               0              0
         1                    1              1              0               0              0
         4                    2              3              0               0              0
         3                    1              5              2               0              0
         0                    0              0              0               0              0
         0                    0              0              0               0              0
         0                    0              0              0               0              0
        22                    6              6              5               5              3
         0                    0              1              0               0              0
         4                    0              8              0               1              1
         0                    0              0              0               0              0
         0                    0              1              0               0              0
         0                    0              1              0               0              0
         0                    0              0              0               0              0
         0                    0              0              0               0              0
         0                    0              0              0               1              0
         0                    0              0              0               0              0
         0                    0              0              0               0              0
         0                    0              0              0               1              1
         0                    2              0              0               0              0
         1                    0              0              0               0              0
            cells activated B vitro
                          GSM539845 marginal zone B cells (spleen)
                                       LPS/aIgD-Dextran
                                                   GSM539847 plasma cells hematopoetic mast cells cell
                                                                 GSM539848 GSM539849 progenitor
GSM539843 BGSM539844 B1 in cells withGSM539846 germinal center B cells (lymph node)
         0              0            3           0             0          0          0
         0              0            0           0             0          0          0
         0              0            0           0             0          0          0
         0              0            0           0             0          0          0
         8              0            3           0             0          0          0
         3              1            3           0             0          1          0
         6              1            4           0             0          0          0
         0              0            0           0             0          0          0
         0              0            0           0             0          0          0
         0              0            0           0             0          0          0
        80              0           17           1             1          6          1
         0              0            0           0             0          0          0
         9              2            4           2             0          1          0
         0              0            0           0             0          0          0
         2              0            1           0             1          0          0
         0              0            0           0             0          0          0
         0              0            0           0             0          0          0
         0              0            0           0             0          0          0
         2              0            0           0             0          0          0
         0              0            0           0             0          0          0
         0              0            1           0             0          0          0
         0              0            0           0             1          1          0
         0              0            0           0             0          0          0
         0              0            0           0             0          0          0
           GSM539851 GSM539852 neutrophil cellsGSM539854 GSM539855 GSM539856 CD4+CD8+ T
                                          replicate 1   replicate 2
GSM539850 basophil cells neutrophil cellsGSM539853 dendritic cells macrophages natural killer cells
         0              0             0               0             0         0              0
         0              0             0               0             0         0              0
         0              0             0               0             0         0              0
         0              0             0               0             0         0              0
         0              1             0               0             0         0              1
         0              7             0               0             0         0              1
         0              7             0               0             0         0              0
         0              0             0               0             0         0              0
         0              0             0               0             0         0              0
         0              0             0               0             0         0              0
         0            23              1               1             3         0              1
         0              0             0               0             0         0              0
         1            20              2               0             0         0              1
         0              1             0               0             0         0              0
         0              3             0               0             0         0              0
         0              0             0               0             0         0              0
         0              0             0               0             0         0              0
         0              1             0               0             0         0              0
         1              2             0               0             0         0              1
         0              0             0               0             0         0              0
         0              0             0               0             0         0              0
         0              1             1               0             0         0              0
         0              0             0               0             0         0              0
         0              0             0               0             0         0              0
           GSM539858 CD8+ T
                         GSM539859 TGSM539860 Th1 cells with GSM539862 Th17 cells
                                        cells activated in vitro
GSM539857 CD4+ T cells (spleen) cells (spleen)                     Concanavalin GSM539863 TFHS cells
                                                      GSM539861 Th2 cells       A
         0            0              0              0            0           0           0
         0            0              0              0            0           0           0
         0            0              0              0            0           0           1
         0            0              0              0            0           0           0
         0            0              0              0            0           0           3
         0            0              0              0            0           0           2
         1            0              3              0            0           0           4
         0            0              0              0            0           0           0
         0            0              0              0            0           0           0
         0            0              0              0            0           0           0
         1            1             54              0            0           0          16
         0            0              0              0            0           0           0
         2            4              5              0            0           0          18
         0            0              0              0            0           0           0
         0            0              3              0            0           0           0
         0            0              0              0            0           0           0
         0            0              0              0            0           0           0
         0            0              0              0            0           0           0
         0            1              0              0            0           0           1
         0            0              0              0            0           0           0
         0            0              0              0            0           0           0
         0            0              0              1            0           0           0
         0            0              0              0            0           0           0
         0            0              0              0            0           0           0
           GSM539865 nTreg cells
GSM539864 iTreg cells               GSM539867 embryonic fibroblast cells BclXL germinal center B cells
                                                 GSM539879 BclXL B activated with LPS/IL4 [BalbC]
                         GSM539866 embryonic stem cells     GSM539880
         0             0          0            0          0              0
         0             0          0            0          0              0
         0             0          0            0          0              0
         0             0          0            0          0              0
         0             1          0            0          0              2
         0             0          0            0          0              3
         0             1          0            0          0             10
         0             0          0            0          0              0
         0             0          0            0          0              0
         0             0          0            0          0              0
         1            11          3            2         13             45
         0             0          0            0          0              0
         0            10          1            0          6             51
         0             0          0            0          0              0
         0             0          0            0          1              2
         0             0          0            0          0              0
         0             0          0            0          0              0
         0             0          0            0          0              0
         0             1          0            0          1              5
         0             0          0            0          0              0
         0             0          0            0          0              0
         0             1          0            0          0              0
         0             0          0            0          0              0
         0             0          0            0          0              0
XL germinal center B cells [BalbC]
cfa-mir-451
GCCAAGACACUUGGGGAUGGCGAGGAAACCGUUACCAUUACUGAGUUUAGUAAUGGUAAUGGUUCUCUUGCUGUACCC
.......(((((((((((((((((..(((((((((((((((((....)))))))))))))))))..)))))))).))).)))...)))............
....................................AAACCGUUACCAUUACUGAGUUU....................................................
....................................AAACCGUUACCAUUACUGAGUU.....................................................
....................................AAACCGUUACCAUUACUGAGU......................................................
....................................AAACCGUUACCAUUACUGAGUUUA...................................................
....................................AAACCGUUACCAUUACUGAG.......................................................
....................................AAACCGUUACCAUUACU..........................................................
....................................AAACCGUUACCAUUACUGA........................................................
....................................AAACCGUUACCAUUACUG.........................................................
....................................AAACCGUUACCAUUACUGAGUUUAG..................................................
....................................AAACCGUUACCAUUAC...........................................................
....................................AAACCGUUACCAUUACUGAGUUUAGU.................................................
.....................................AACCGUUACCAUUACUGAGUUU....................................................
.....................................AACCGUUACCAUUACUGAGUU.....................................................
.....................................AACCGUUACCAUUACUGAGU......................................................
.....................................AACCGUUACCAUUACUGAGUUUAGU.................................................
.....................................AACCGUUACCAUUACUGAGUUUA...................................................
.......................................CCGUUACCAUUACUGAGUUU....................................................
........................................................UUUAGUAAUGGUAAUGGUUCUC.................................
........................................................UUUAGUAAUGGUAAUGGUUCU..................................
.........................................................UUAGUAAUGGUAAUGGUUCU..................................
........................................CGUUACCAUUACUGAGUUU....................................................
........................................CGUUACCAUUACUGAGUU.....................................................
........................................CGUUACCAUUACUGAGU......................................................
.........................................GUUACCAUUACUGAGUUU....................................................
.........................................GUUACCAUUACUGAGUU.....................................................
..........................................UUACCAUUACUGAGUUU....................................................
..........................................UUACCAUUACUGAGUU.....................................................
........................................CGUUACCAUUACUGAG.......................................................
...........................................UACCAUUACUGAGUUU....................................................
............................................ACCAUUACUGAGUUUA...................................................
UUCUCUUGCUGUACCCACAAUACGUGCCAAGAAGACAG
        reads    blast
           29996       1 dog
           18651       1 dog
            6124       1 dog
             894       1 dog
             876       1 dog
             220       1 dog
             205       1 dog
              87       1 dog
              42       1 dog
              39       1 dog
              22       1 dog
              19       1 dog
              17       1 dog
               4       1 dog
               1       1 dog
               1       1 dog
               1       1 dog
               3       1 dog
               3       1 dog
               2       1 dog
              14       1 dog
              13       1 dog
               5       1 dog
               3       1 dog
               3       1 dog
               2       1 dog
               1       1 dog
               1       1 dog
               1       1 dog
               1       1 dog
gga-mir-451
GCCAAGGACACAUGGCUGGCAGGGAAACCGUUACCAUUACUGAGUUUAGUAAUGGUAACGGUUCUGCUGACAGCCAGG
.((.........((((((.(((((((.(((((((((((((((....))))))))))))))))))).))).)))))).((.....))..))..
....................................AAACCGUUACCAUUACUGAGUUU....................................................
....................................AAACCGUUACCAUUACUGAGUUUA...................................................
....................................AAACCGUUACCAUUACUGAGUU.....................................................
....................................AAACCGUUACCAUUACUGAGU......................................................
....................................AAACCGUUACCAUUACUGAGUUUAG..................................................
....................................AAACCGUUACCAUUACUGAGUUUAGU.................................................
....................................AAACCGUUACCAUUACUGAG.......................................................
....................................AAACCGUUACCAUUACUGA........................................................
....................................AAACCGUUACCAUUACU..........................................................
....................................AAACCGUUACCAUUAC...........................................................
.....................................AACCGUUACCAUUACUGAGUUU....................................................
....................................AAACCGUUACCAUUACUGAGUUUAGUA................................................
....................................AAACCGUUACCAUUACUGAGUUUAGUAA...............................................
....................................AAACCGUUACCAUUACUG.........................................................
.....................................AACCGUUACCAUUACUGAGUUUAG..................................................
........................................CGUUACCAUUACUGAGUUU....................................................
........................................CGUUACCAUUACUGAGUUUA...................................................
.........................................GUUACCAUUACUGAGUUU....................................................
.........................................GUUACCAUUACUGAGUUUA...................................................
UCUGCUGACAGCCAGGCAUGCAGCGAGGAA
        reads      blast
              9131       1 chicken
              1346       1 chicken
               599       1 chicken
               139       1 chicken
               113       1 chicken
               106       1 chicken
                81       1 chicken
                18       1 chicken
                14       1 chicken
                13       1 chicken
                 8       1 chicken
                 5       1 chicken
                 4       1 chicken
                 4       1 chicken
                 2       1 chicken
                10       1 chicken
                 1       1 chicken
                 1       1 chicken
                 1       1 chicken

				
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