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Creating Microarray Workflows in ProteusLIMS

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Creating Microarray Workflows in ProteusLIMS Powered By Docstoc
					ProteusLIMS Training:
Task Management and
Workflow Template

Sau-Mei Leung Ph.D.
            What is Task Management?

            Task Management is created for tracking billable work

            Any work done in the laboratory is considered as a Task
               Examples:
                  Prepare Final report, Customer consultation
                  Any Processes such as Sample Preparation, Digestion, MS analysis,
                   Protein Search, etc.

               There are 7 tasks for the following PMF workflow
                 Sample preparation (Task 1)
                   2D gel (Task 2)
                     Digestion (Task 3)
                        MALDI-TOF (Task 4)
                           Mascot search (Task 5)
                              Final report (Task 6)
                                  Customer consultation (Task 7)
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           What is Task Management?
     Task can be assigned to laboratory staff
     Report can be generated for these tasks for billing




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            What is Workflow Template?
       A powerful way to store commonly used laboratory procedures in
           ProteusLIMS
            Example of a Workflow Template created for “PMF and TOF/TOF”




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           What is the relationship between
           Workflow Template and Task
           Management?
    Workflow template is required for tracking billable work via Task
     Management
    You will need to create each billable Task in the configuration in
     order to build a Workflow Template




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            What is Workflow Template?

            Once the Workflow template is created, it can be
            assigned to sample




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           Creating a PMF Workflow Template
              This presentation will outline the creation of a PMF
               Workflow.

              Prerequisites:
                  Three processes have been created in the ProteusLIMS
                   system for the PMF Workflow Template (i.e. Digestion,
                   MALDI-TOF analysis and Protein Search).


              Outline:
               1. Create a corresponding Task for each Process
               2. Create a Workflow Template using the Tasks
               3. Assign the Workflow Template to a sample



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           Login as administrator to access
           configuration




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           Add new task




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           New Task : Tryptic digestion



Select Process
and what is
associated with
this task




  Click save and then add two more tasks: MALDI-TOF analysis
  and Protein Search using Mascot
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           Three new tasks have been added




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           Create the Workflow Template



                                        Select the item you
                                        want to add a
                                        workflow for.




                     Use the “Add” button to
                     add a new workflow for
                     the selected item.



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           Create the Workflow




             Use the “Add” buttons to insert
             new tasks in the workflow.




               Select a default
               protocol for each task.
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           Finish adding the tasks to the Workflow
           Template




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           Assign the Workflow Template to a sample




                   Select samples in a
                   project sample list and
                   right-click to add the
                   workflow to the samples.


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           Assign the Workflow Template to Samples




                Initially no tasks are assigned to
                the samples.




                                          Use the “Select a
                                          Workflow” button to add an
                                          entire workflow to the
                                          samples.
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           Assign the Workflow Template




            The default protocol you specified
            earlier is automatically used for a task.


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           Run the Workflow




            After assigning the workflow, it is possible for users
            to run the workflow’s tasks directly from the sample
            view
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