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Percentage_of_similarity

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					Table 4 supp: Average percentage of similarity of the TE copies with the reference elements
according to the synonymous and non-synonymous sites, and to the non-coding regions. The
variance values are in parentheses



class              name                                 % similarity
                                    synonymous sites non-synonymous non-coding
                                                     sites           sequences
LTR
retrotransposons
                   mdg1             99.170 (0.360)     99.290 (0.450)    98.900 (0.059)

                   412              99.850 (0.020)     99.890 (0.010 )   99.580 (0.020)

                   stalker          98.360 (3.260)     98.650 (2.320)    97.000 (10.000)

                   new_stalker      99.940 (0.007)     99.880 (0.140)    99.730 (0.030)

                   blood            99.970 (0.004)     99.910 (0.010)    99.780 (0.040)

                   tirant           99.970 (0.011)     99.960 (0.030)    99.770 (0.039)

                   copia            99.860 (0.006)     99.890 (0.026)    99.900 (0.030)

                   297              99.630 (0.130)     98.360 (1.560)    99.210 (0.010)

                   17.6             99.760 (0.050)     99.630 (0.190)    99.080 (0.420)

                   rover            99.840 (0.040)     99.860 (0.017)    99.910 (0.040)

                   roo/B104         99.960 (0.005)     99.910 (0.017)    99.570 (0.700)

                   bel              99.940 (0.005)     99.950 (0.002)    99.770 (0.005)

                   tinker           99.920 (0.008)     99.750 (0.130)    99.640 (0.070)



non-LTR
retrotransposons
                   jockey           99.420 (0.100)     99.570 (0.040)    99.860 (1.200)

                   F                99.630 (0.420)     99.580 (0.790)    99.700 (0.300)

                   doc              99.360 (0.370)     99.930 (0.058)    99.740 (0.430)

                   doc2             98.610 (/)         97.300 (/)        98.180 (/)

                   doc3             97.420 (4.140)     91.000 (6.900)    93.640 (10.330)



Transposons
hobo     99.920 (0.030)    100.000 (0.000)   100.000 (0.000)

pogo     100.000 (0.000)   99.500 (0.240)    99.920 (0.060)

bari-1   100.000 (0.000)   99.630 (0.103)    99.820 (0.020)

				
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