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Variable Definition list

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Variable Group Variable Name Variable Type Read Write



Image Image.ActivePlane Number Yes Yes





Image.ActiveRegion Number Yes Yes





Image.Annotation String Yes Yes



Image.C02PressureStatus Number Yes Yes



Image.CameraX Number Yes Yes



Image.CameraY Number Yes Yes





Image.Depth Number Yes No

Image.FileDir String Yes Yes

Image.FileDrive String Yes Yes

Image.FileName String Yes Yes





Image.FilePath String Yes Yes

Image.Gamma Number Yes Yes





Image.Height Number Yes No



Image.IllumSetting String Yes Yes



Image.MagSetting String Yes Yes

Image.MouseClick.Flags Number Yes No

Image.MouseClick.Plane Number Yes No

Image.MouseClick.X Number Yes No

Image.MouseClick.Y Number Yes No





Image.NA Number Yes Yes





Image.Name String Yes Yes





Image.NumPlanes Number Yes No



Image.NumRegions Number Yes No





Image.Pixel.BlueValue Number Yes Yes

Image.Pixel.GreenValue Number Yes Yes





Image.Pixel.Intensity Number Yes Yes





Image.Pixel.RedValue Number Yes Yes







Image.Pixel.X Number Yes Yes







Image.Pixel.Y Number Yes Yes



Image.PlaneFileDir String Yes No



Image.PlaneFileDrive String Yes No

Image.PlaneFileIndex Number Yes No



Image.PlaneFileName String Yes No



Image.PlaneFilePath String Yes No





Image.RefractiveIndex Number Yes Yes

Image.ScaleAutoScale Number Yes Yes

Image.ScalePercentHigh Number Yes Yes

Image.ScalePercentLow Number Yes Yes

Image.ScaleValueHigh Number Yes Yes

Image.ScaleValueLow Number Yes Yes



Image.StageLabel String Yes Yes

Image.StageX Number Yes Yes

Image.StageY Number Yes Yes



Image.Temperature Number Yes Yes

Image.ThreshMax Number Yes Yes

Image.ThreshMin Number Yes Yes



Image.ThreshState Number Yes Yes

Image.Time.Create.Date Number Yes No

Image.Time.Create.String String Yes No

Image.Time.Create.Time Number Yes No





Image.Wavelength Number Yes Yes

Image.Width Number Yes No



Image.XCalibration Number Yes Yes



Image.YCalibration Number Yes Yes



Image.ZAbsolute Number Yes Yes



Image.ZDistance Number Yes Yes

Image.Zoom Number Yes Yes

Executable



Yes





Yes





No



No



No



No





No

No

No

No





No

Yes





No



No



No

No

No

No

No





No





Yes





No



No





Yes

Yes





Yes





Yes







Yes







Yes



No



No

No



No



No





No

Yes

Yes

Yes

Yes

Yes



No

No

No



No

Yes

Yes



Yes

No

No

No





No

No



No



No



No



No

Yes

Definition

Specifies the active plane of the current image. When changed it will set the active plane to the designated

number in the active image. It can be used as the For variable in a For/Next loop to loop for all planes. i.e. For

Imgane.ActivePlane = 1 to Image.NumPlanes step 1.

Specifies the active region on the current image. When changed it will set the active region to the designated

number on the active image. It can be used as the For variable in a For/Next loop to loop for all regions. i.e. For

Imgane.ActiveRegion = 1 to Image.NumRegions step 1.

Information stored with the image as configured in the Annotation tab of the Acquire dialog. To add additional

information to what is present use an Assign to Variable statement where Image.Annotation = Image.Annotation

+ "Your additional information"

Current Hardware settings at time image was acquired. If there is no device configure the value will be blank.

This value is the current CO2 Pressure from an incubation chamber on the microscope stage.

Upper left X pixel location on the chip of the camera that the image was acquired. Value will be 0 if used full chip,

but will be different if used center quadrant or active region to designate the chip area used for acquisition.

Upper left Y pixel location on the chip of the camera that the image was acquired. Value will be 0 if used full chip,

but will be different if used center quadrant or active region to designate the chip area used for acquisition.

Image Bit-Depth of the active image. Value is set at image window creation. Determined by camera settings at

acquisition, or result image setting for certain dialogs in MetaMorph, i.e. New Image dialog, Arithmetic dialog,

Color Combine dialog, etc..

Last directory that image was saved into. Value will be blank if image has not been saved.

Last drive that image was saved into. Value will be blank if image has not been saved.

File name File Path including was last saved.the image was blank ifinto. Value not been saved.

Complete used when image extension that Value will be saved image has will be blank if image has not been

saved. Variable can be built by combining File Drive, File Directory, File Name and an extension. i.e.

Image.FilePath = Image.FileDrive + Image.FileDir + Image.FileName + ".tif" will save out a tiff image in the path

created.

Current Gamma setting for active image. Changing this value will adjust the gamma of the image.

The Height in pixels of the active image. Can be used as an End Value variable in a nested For/Next loop to

cycle through every pixel in an image. i.e. FOR Image.Pixel.X = 1 TO Image.Width, FOR Image.Pixel.Y = 1 TO

Image.Height STEP 1, NEXT, NEXT.

Current Hardware settings at time image was acquired. If there is no device configure the value will be blank.

This value is the current Illumination Setting at the time the image was acquired.

Current Hardware settings at time image was acquired. If there is no device configure the value will be blank.

This value is the current Magnification Setting selected at the time the image was acquired.



Records the plane number of the last left mouse button click in the active image.

Records the X pixel location of the last left mouse button click in the active image.

Records the Y pixel location of the last left mouse button click in the active image.

Current Hardware settings at time image was acquired. If there is no device configure the value will be blank.

This value is based on the current Magnification Setting used at the time the image was acquired. It is set in the

Meta Imaging Series Administrator's Configure Hardware>>> Objectives Settings for the microscope.

Image name displayed on the image window title bar. Ideally used with a custom variable to store a specific

image name that can be later recalled to assure the correct image is being used for specific steps of the journal.

i.e. ImgNam = Image.Name… later: Select Image function>>> Specified option is set to %ImgNam%.

Indicates the number of plane in the active image window. For a single plane image this value is 1 for a

multiplaned image it is the total number of planes in the stack. Typically used to either verify that a stack is open

(If Image.NumPlanes > 1) or to do a loop for all planes (For Image.ActivePlane = 1 to Image.NumPlanes step 1).

Indicates the number of regions on the active image window. Typically used to do a loop for all regions (For

Image.ActiveRegion = 1 to Image.NumRegions step 1).

Intensity value of the blue channel of a 24-bit image at the specified Pixel.X and Pixel.Y position of the image.

Must set the Pixel.X and Pixel.Y values first. This intensity value can be change through a simple variable whole

number assignment or though a formula calculation in the expression of a variable assignment.

Intensity value of the green channel of a 24-bit image at the specified Pixel.X and Pixel.Y position of the image.

Must set the Pixel.X and Pixel.Y values first. This intensity value can be change through a simple variable whole

number assignment or though a formula calculation in the expression of a variable assignment.

Intensity value at the specified Pixel.X and Pixel.Y position of a monochrome image. Must set the Pixel.X and

Pixel.Y values first. This intensity value can be change through a simple variable whole number assignment or

though a formula calculation in the expression of a variable assignment.

Intensity value of the red channel of a 24-bit image at the specified Pixel.X and Pixel.Y position of the image.

Must set the Pixel.X and Pixel.Y values first. This intensity value can be change through a simple variable whole

number assignment or though a formula calculation in the expression of a variable assignment.

Sets the X pixel position in the image to allow changing the Image.Pixel.Intensity value (as well as the .BlueValue,

GreenValue, and RedValue of 24-bit images) Can be placed in a nested For/Next loop to loop through every

pixel in an image. i.e. For Image.Pixel.X = 1 to Image.Width step 1 with For Image.Pixel.Y = 1 to Image.Height

step 1 between the For and the Next.

Sets the X pixel position in the image to allow changing the Image.Pixel.Intensity value (as well as the .BlueValue,

GreenValue, and RedValue of 24-bit images) Can be placed in a nested For/Next loop to loop through every

pixel in an image. i.e. For Image.Pixel.X = 1 to Image.Width step 1 with For Image.Pixel.Y = 1 to Image.Height

step 1 between the For and the Next.

File directory of active plane the image was saved. Can be different in each plane if stack was built in MetaMorph

by adding images to a stack. For a single plane image same as Image.FileDir

File drive of active plane the image was saved. Can be different in each plane if stack was built in MetaMorph by

adding images to a stack. For a single plane image same as Image.FileDrive

Plane number. May be 0 if stack was just built and has not been saved.

File Name of active plane the image was saved. Can be different in each plane if stack was built in MetaMorph

by adding images to a stack. For a single plane image same as Image.FileName.

File Path of active plane the image was saved. Can be different in each plane if stack was built in MetaMorph by

adding images to a stack. For a single plane image same as Image.FilePath

Current Hardware settings at time image was acquired. If there is no device configure the value will be blank.

This value is based on the current Magnification Setting used at the time the image was acquired. It is set in the

Meta Imaging Series Administrator's Configure Hardware>>> Objectives Settings for the microscope.

Turns AutoScale on or off. If value =1, AutoScale is on, if value = 0, AutoScale is off.

Sets High % value used in AutoScale

Sets Low % value used is AutoScale

Sets High value used in non-AutoScale mode

Sets Low value used in non-AutoScale mode

Current Stage Label settings at time image was acquired. If there is no device configure the value will be blank.

Used with Stage Memory List, an MDA stage list, or a Scan Multi-Well Plate (Well number) before image

Current X value of stage at time image was acquired.

Current Y value of stage at time image was acquired.

Current Hardware settings at time image was acquired. These values can be read or written to. If there is no

device configure the value will be blank.

Sets the maximum intensity value for the threshold range.

Sets the minimum intensity value for the threshold range.

Sets Threshold state. Value = 0, threshold is off. Value = 1, threshold is set to inclusive. Value = 2, threshold is

set to exclusive.

Numeric value of date image was created. Cannot be changed.

Text string of time and date image was created. Cannot be changed.

Numeric value of time image was created. Cannot be changed.

Current Hardware settings at time image was acquired. If there is no device configure the value will be blank.

Value is based on the current Illumination Setting at the time the image was acquired. Is set in the Configure

Illumination dialog, Wavelength box.

The width in pixels for the active image. Can be used as an End Value variable in a nested For/Next loop to cycle

through every pixel in an image. i.e. FOR Image.Pixel.X = 1 TO Image.Width, FOR Image.Pixel.Y = 1 TO

Image.Height STEP 1, NEXT, NEXT.

X pixel calibration value. Can be applied through the Calibrate Distance dialog post acquisition, or at acquisition if

a calibration setting is linked to a Magnification setting.

Y pixel calibration value. Can be applied through the Calibrate Distance dialog post acquisition, or at acquisition if

a calibration setting is linked to a Magnification setting.

Current Hardware settings at time image was acquired. These values can be read or written to. If there is no

device configure the value will be blank.

Current Hardware settings at time image was acquired. These values can be read or written to. If there is no

device configure the value will be blank.

Current image zoom setting. Changing this value will adjust the zoom setting on the image.

Variable Group Variable Name Variable Type Read Write

Program Acquire.ErrorCode Number

Acquire.FPS Number

Acquire.Save.LastName String

Acquire.Save.LastPath String

Acquire.Save.NextName String

Acquire.Save.NextPath String



AdjustXYPosition.X Number



AdjustXYPosition.Y Number

Camera.Digital.Exposure Number Yes Yes





Component.XXXX_XXX Number or String Yes Yes



CopyFile.ErrorCode String

CreateDirectory.ErrorCode String

DeleteFile.ErrorCode String

Device.ActiveShutter.State Number Yes Yes

Device.Focus.Bottom Number

Device.Focus.CurPos Number

Device.Focus.Home Number

Device.Focus.Top Number



Device.Illumination.Setting String



Device.Magnification.Setting String

Device.Stage.XPosition Number

Device.Stage.Yposition Number

DoesFileExist.ErrorCode String

EnterVariable.LastResponse String



File.LastOpenedFile String





IMAObjectData.AverageGrayValue Number





IMAObjectData.TotalGrayValue Number

Journal.RunJournalLastDirectory String

MDA.BaseName String

MDA.Exposure Number

MDA.Gain Number



MDA.IntensifierGain Number

MDA.IntervalnSec Number

MDA.NumTimePoints Number



MDA.Path String

MDA.Stage.AFOffset Number

MDA.Stage.X Number

MDA.Stage.Y Number



MDA.Stage.Z Number



MDA.Stage.Z2 Number

MDA.Stage.ZTravelOffset Number



MDA.Status.StagePosName String







MDA.Status.StagePosNum Number





MDA.Status.TimePointNum Number





MDA.Status.WaveName String





MDA.Status.WaveNum Number





MDA.Status.ZStepNum Number

MDA.StreamExposure Number

MDA.StreamGain Number



MDA.StreamIntensifierGain Number

Morphometry.OD.HighBoundary Number

Morphometry.OD.LowABoundary Number

Morphometry.StdArea Number

MoveFile.ErrorCode String



PickPoint.Success Number

PickPoint.X Number

PickPoint.Y Number



ScanSlide.BaseName String



ScanSlide.Directory String



ScanSlide.RegionLowerRight.StageX Number



ScanSlide.RegionLowerRight.StageY Number



ScanSlide.RegionUpperLeft.StageX Number



ScanSlide.RegionUpperLeft.StageY Number

ScanSlide.ScanLowerRight.X Number

ScanSlide.ScanLowerRight.Y Number

ScanSlide.ScanUpperLeft.X Number

ScanSlide.ScanUpperLeft.Y Number

ScanSlide.Status.WaveNum String

ScanSlide.Status.XStep Number

ScanSLide.Status.Ystep Number

SelectDirectory.Path String

SelectDirectory.Success Number

SelectRegion.Success Number

SerialData.Success Number

UserName ?????

Executable









???





Yes









Yes

Definition

Frames Per Second value from camera durning live mode

Name of last saved acquired image

Directory path of last saved acquired image

If using save w/ Sequence, this is the next Acquired image name that will be used.

If using save w/ Sequence, this is the directory path that will be used.

New X stage position calculated in the Sample Reload Adjustment using the Single Position option of the Update

Stage Position(s) tab

New Y stage position calculated in the Sample Reload Adjustment using the Single Position option of the Update

Stage Position(s) tab

Current Camera Exposure time that is set in the Acquire dialog



Specific device compontents current position. This list will depend on what hardware is install with the system.

The variables will be listed as Component.(Manufacture Name).(Component Name).









Designates the current shutter state. Value=1 open, Value = 0 closed

Current Bottom position value set in the Focus dialog

Current Position of the active z motor

Current Home position value set in the Focus dialog

Current Top positoin value set in the Focus dialog

Current Illumination setting selected. Changing this will change the selected Illumination setting. Value must

match the names in the Configure Illumination list. If not the setting does not change.

Current Magnigication setting selected. Changing this will change the selected Magnification setting. Value must

match the names in the Configure Magnification list. If not the setting does not change.

Current X stage position

Current Y stage position



The last response value used in the Enter Variable dialog from journal playback.

Records the resopnse to Yes, No or Yes, No Cancel buttion selections from either Enter Variable or Prompt User

durning journal playback.

Legacy variable. In the IMA, the parameter Average Gray Value got change to Average Intensity. This variable is

needed for legacy support of older journals that may be using it. After measuring and logging in the IMA, it has

the same value as IMAObjectData.AverageIntensity variable in the Measurements variables list.

Legacy variable. In the IMA the parameter Total Gray Value got change to Total Intensity. This variable is

needed for legacy support of older journals that may be using it. After measuring and logging in the IMA, it has

the same value as IMAObjectData.TotalIntensity variable in the Measurements variables list.

Records the directory that the last run journal was stored.

Base name in the Saving tab of the MDA

Exposure Time of the current wavelength being acquired in an MDA experiment.

Gain setting of the current wavelength being acquired in an MDA experiment.

Intensifier Gain setting of the current wavelength being acquired in an MDA experiment. Option only available if

camera has an Intensifuer.

Interval value in seconds of the Time Interval setting on the Timelapse tab of the MDA

Number of time points currently configured in the Timelapse tab of the MDA.

The directory path that the experiment will be saved into as chosen with the Select Directory on the Saving tab of

the MDA.

This is the offset postion value for a z motor that has a hardware based autofocus device attached to the scope

from the current stage position being acquired in an MDA experiment.

The current X stage position being acqured in an MDA experiment.

The current Y stage position being acqured in an MDA experiment.

The current Z stage position being acqured in an MDA experiment. Value is used if only one z motor configure or

is the position of the first z motor if dual z motors are being used.

The current Z2 stage position being acqured in an MDA experiment. Value is not used if only one z motor

configure or is the position of the second z motor if dual z motors are being used.

The current Z travel offset configured for the stage position being acqured in an MDA experiment.

Current Stage position name being acquired in an MDA experiment. The stage postion name is configure on the

stage tab of the MDA dialog.

Current Stage position number being acquired in an MDA experiment. Based on the list created on the Stage tab

of the MDA dialog. Value could be monitored and trigger something to happen once a specific Stage postion is

being acquired. i.e. If MDA.Status.StagePosNum = 1 then ... end if. will execute what ever actions are placed

after the then everytime Stage Positon 1 is being acquired.

Current time point number being acquired in an MDA experiment. Value could be monitored and trigger

something to happen once a specific Time Point is being acquired. i.e. If MDA.Status.TimePointNum = 3 then ...

, will execute what ever actions are placed after the then everytime Time Point 3 is being acquired.

Current Wavelength Name being acquired in an MDA experiment. Value could be monitored and trigger

something to happen once a specific Time Point is being acquired. i.e. If MDA.Status.WaveName = "Blue" then

... , will execute what ever actions are placed after the then everytime Wavelength "Blue" is being acquired.

Current Wavelength number being acquired in an MDA experiment. Value could be monitored and trigger

something to happen once a specific Time Point is being acquired. i.e. If MDA.Status.WaveNum = 3 then ... , will

execute what ever actions are placed after the then everytime Wavelength 3 is being acquired.

Current Z position number being acquired in an MDA experiment. Value could be monitored and trigger

something to happen once a specific Time Point is being acquired. i.e. If MDA.Status.ZStepNumNum = 3 then ...

, will execute what ever actions are placed after the then everytime Z positoin 3 is being acquired.

Stream Exposure time being acquired in an MDA experiment, as configured in the Stream tab of the MDA dialog

Stream Gain Setting being acquired in an MDA experiment, as configured in the Stream tab of the MDA dialog

Stream Intensifier Gain setting being acquired in an MDA experiment, as configured in the Stream tab of the MDA

dialog. Option is only available if the camera has an intensifier.

Optical Density High boundary value set in the Preferences tab of the IMA dialog

Optical Density Low boundary value set in the Preferences tab of the IMA dialog

Standard Area value set in the Preferences tab of the IMA dialog



Indicates whether a left mouse click has be done to the active image when usign the Pick Point function in a

journal. Value = 0 click has not happened, Value = 1 click has happened.

X pixel location clicked on the image using the Pick Point function in a journal

Y pixel location clicked on the image using the Pick Point function in a journal

Base File name configured on the Main tab of the Scan Slide dialog. Changing this value will override the current

setting

Directory that current Scan Slide will be saved, configured on the Main tab of the Scan Slide dialog. Changing

this value will override the current setting

X stage position of the Lower Right X location of the active region on the low res tiled image of the corrent scan

or a previously acquired scan.

Y stage position of the Lower Right Y location of the active region on the low res tiled image of the corrent scan

or a previously acquired scan.

X stage position of the Upper Leftt X location of the active region on the low res tiled image of the corrent scan or

a previously acquired scan.

Y stage position of the Upper Right Y location of the active region on the low res tiled image of the corrent scan or

a previously acquired scan.

Lower Right X stage position configured on the Slide Area tab of the Scan Slide dialog.

Lower Right Y stage position configured on the Slide Area tab of the Scan Slide dialog.

Upper Left X stage position configured on the Slide Area Tab fo the Scan Slide dialog.

Upper Left Y stage position configured on the Slide Area Tab fo the Scan Slide dialog.

Current Wavelength number bing acquired in a Scan Slide.





Select Directory function. Displays the path of the selected directory

Select Directory function. 1= Directory selected by user

Select Region function 1= region exists and is selected. 0= not selected.

Wait for serial Data. 0= time out. 1=Serial Data returned.

Variable Group Variable Name Variable Type Read Write

Region Region.ColorBlue Number Yes Yes

Region.ColorGreen Number Yes Yes

Region.ColorRed Number Yes Yes

Region.Height Number Yes Yes

Region.Label String Yes Yes

Region.Left Number Yes Yes

Region.Top Number Yes Yes

Region.Type String Yes No

Region.Width Number Yes Yes

Executable

Yes

Yes

Yes

Yes

Yes

Yes

Yes

No

Yes

Definition

Blue RGB component value of Region Color of active region

Green RGB component value of Region Color of active region

Red RGB component value of Region Color of active region

Distance in the Y direction down from the Region.Top position of active region. Changes to overall size of the region

String value of region label.

Top Left X coordinate position of the active region. Changes the region location

Top Left Y coordinate position of the active region. Changes the region location

Indicates the type of region active. Region Types include: Rectangle, Ellipse, Line, Polyline and Polygon

Distance in the X direction to the right from the Region.Left position of active region. Changes to overall size of the region

ze of the region









all size of the region



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