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					Table S1. This sheet shows transcripts that are significantly different in abundance at the 95% confidence level between lsf1 (At3g

 Affy Probe      log2 ratio    Fold change     AGI number
248676_at         2.32348347   5.005393426    At5g48850
255604_at       1.932542532    3.817273437    At4g01080
249752_at       1.730103568    3.317516332    At5g24660
261684_at       1.529499605    2.886856919    At1g47400
260955_at       1.516366508    2.860696623    At1g06000
244974_at       1.436032402    2.705757232    psbN
263268_at         1.42328274   2.681950742    At2g16590
244966_at       1.398588364    2.636434882    petG
257793_at       1.326114203    2.507264508    At3g26960
244990_s_at     1.312364312    2.483482037    orf77.1
245024_at       1.308982308    2.477667012    atpA
245638_s_at     1.288479145    2.442704156    At1g24996
251899_at       1.287172308    2.440492483    At3g54400
254343_at       1.274489025    2.419131216    At4g21990
250942_at       1.260530511     2.39583825    At5g03350
259842_at       1.217835289    2.325974514    At1g73600
248353_at       1.216168708    2.323289133    At5g52320
255433_at       1.203844044     2.30352626    At4g03210
266325_at       1.200751383     2.29859355    At2g46630
255284_at       1.198083466    2.294346782    At4g04610
265831_at       1.197675017    2.293697309    At2g14460
260126_at         1.19271114   2.285818952    At1g36370
264286_at       1.186936355    2.276687619    At1g61870
244991_s_at     1.185587328    2.274559742    ndhB.1
246884_at       1.168373512    2.247581627    At5g26220
258470_at       1.163717897    2.240340312    At3g06035
244977_at       1.153876063    2.225109081    petD
257382_at       1.144666103    2.210949545    At2g40750
260618_at       1.134343106    2.195185878    At1g53230
263134_at       1.131380329    2.190682382    At1g78570
264898_at       1.124126441    2.179695249    At1g23205
267595_at       1.119293366    2.172405418    At2g32990
257173_at       1.114663441    2.165444866    At3g23810
253162_at       1.114496773    2.165194717    At4g35630
253050_at       1.100485591    2.144268534    At4g37450
245035_at       1.097204924     2.13939804    At2g26400
256275_at       1.095974493     2.13757419    At3g12110
265837_at       1.084272372    2.120305829    At2g14560
252831_at       1.084049964    2.119978985    At4g39980
245025_at       1.082019917    2.116998016    atpF
257763_s_at     1.081307948    2.115953536    At3g23110
258155_at       1.080026581    2.114075032    At3g18130
265730_at       1.076881645    2.109471572    At2g32220
248043_s_at     1.075149519    2.106940421    At5g56000
259757_at       1.074748133     2.10635431    At1g77510
259985_at       1.071157289    2.101118149    At1g76620
251174_at       1.062721459     2.08886819    At3g63200
257658_at      1.057599089    2.081464696    At3g13230
255080_at       1.05129153    2.072384258    At4g09030
247189_at      1.048910475    2.068966772    At5g65390
245816_at      1.039913321    2.056104116    At1g26210
253245_at      1.039542478    2.055575665    At4g34590
248889_at      1.035264947    2.049489995    At5g46230
250546_at      1.034740962    2.048745757    At5g08180
246995_at      1.024034283    2.033597671    At5g67470
245956_s_at    1.020116072    2.028082122    At5g28540
258979_at      1.012711741    2.017700079    At3g09440
251638_at      1.000613043    2.000850038    At3g57490
263942_at      0.998735058    1.998247186    At2g35860
251058_at      0.994321056    1.992142787    At5g01790
258415_at      0.992287244    1.989336379    At3g17390
262094_at      0.989499411     1.98549594    At1g56110
254785_at      0.986016755    1.980708747    At4g12730
261907_at      0.983585724     1.97737394    At1g65060
264803_at      0.979283821    1.971486486    At1g08580
248625_at      0.970217937    1.959136524    At5g48880
261055_at      0.966505226    1.954101257    At1g01300
245254_at      0.960364158    1.945800982    At4g14680
267260_at       0.95674994    1.940932492    At2g23130
246575_at      0.951464795     1.93383512    At1g31660
256673_at      0.939297637    1.917594448    At3g52370
262682_at      0.933512529    1.909920422    At1g75900
252034_at      0.930747487     1.90626341    At3g52040
260533_at     -0.903410481    -1.87048252    At2g43370
261056_at     -0.920941666      -1.8933507   At1g01360
261663_at     -0.924120436    -1.89752703    At1g18330
250000_at      -0.92480422      -1.8984266   At5g18650
251066_at      -0.92980078    -1.90501292    At5g01880
264788_at     -0.931815415    -1.90767501    At2g17880
247361_at     -0.940020881    -1.91855601    At5g63480
246028_at      -0.94158594    -1.92063842    At5g21170
250032_at     -0.943452545    -1.92312501    At5g18170
250099_at     -0.947962124    -1.92914572    At5g17300
264210_at      -0.95099906    -1.93321093    At1g22640
246178_s_at   -0.953537922       -1.936616   At5g28430
259787_at     -0.962826469      -1.9491248   At1g29460
247474_at     -0.964616395    -1.95154455    At5g62280
262719_at     -0.971294265    -1.96059869    At1g43590
249831_at     -0.972178722    -1.96180102    At5g23340
247072_at     -0.974000708    -1.96428015    At5g66490
252323_at     -0.974755227    -1.96530773    At3g48530
262383_at     -0.977605333    -1.96919411    At1g72940
262552_at     -0.981085764    -1.97395043    At1g31350
252230_at     -0.984419209    -1.97851665    At3g49810
252464_at     -0.985514331    -1.98001908    At3g47160
250809_at        -0.9859957   -1.98067984    At5g05140
256914_at     -0.988931008    -1.98471383    At3g23880
246215_at   -0.988966226    -1.98476229    At4g37180
254953_at   -0.989330931    -1.98526409    At4g10925
247793_at   -0.989773925    -1.98587377    At5g58650
258501_at      -0.9936436   -1.99120754    At3g06780
246975_at   -1.002887373    -2.00400676    At5g24890
259015_at   -1.007057203    -2.00980733    At3g07350
251221_at   -1.007391232    -2.01027272    At3g62550
261253_at   -1.017834795    -2.02487773    At1g05840
256413_at   -1.017882552    -2.02494476    At3g11100
267035_at   -1.022468971    -2.03139243    At2g38400
247029_at   -1.023704204    -2.03313245    At5g67190
245264_at   -1.030066679    -2.04211863    At4g17245
255037_at   -1.030610996    -2.04288925    At4g09460
260799_at   -1.035073036    -2.04921738    At1g78270
252036_at   -1.040526269    -2.05697786    At3g52070
264339_at   -1.045299521    -2.06379478    At1g70290
253806_at   -1.047451442    -2.06687543    At4g28270
259373_at   -1.050403572    -2.07110913    At1g69160
264246_at   -1.051634474    -2.07287694    At1g60140
267523_at   -1.053458955    -2.07550003    At2g30610
252234_at   -1.060138316    -2.08513142    At3g49780
263265_at   -1.076658344    -2.10914509    At2g38820
253814_at   -1.077535048    -2.11042718    At4g28290
267557_at   -1.084095602    -2.12004605    At2g32710
252040_at   -1.084850583    -2.12115579    At3g52060
257381_at   -1.093045864    -2.13323938    At2g37950
254178_at    -1.09324862     -2.1335392    At4g23880
265648_at   -1.093489968    -2.13389615    At2g27500
261265_at   -1.097695566    -2.14012574    At1g26800
257624_at   -1.112383268    -2.16202509    At3g26220
263953_at   -1.125571098       -2.181879   At2g36050
254424_at   -1.128256036    -2.18594338    At4g21510
256433_at   -1.136248273    -2.19808667    At3g10980
265023_at    -1.13626319     -2.1981094    At1g24440
247585_at   -1.148654062     -2.2170696    At5g60680
258262_at   -1.155814737    -2.22810116    At3g15770
248050_at   -1.159848975    -2.23434037    At5g56100
251443_at   -1.161473299    -2.23685742    At3g59940
266656_at   -1.162231713    -2.23803363    At2g25900
260567_at   -1.162622557    -2.23864002    At2g43820
257615_at   -1.183348758    -2.27103314    At3g26510
258939_at   -1.184656932    -2.27309335    At3g10020
253125_at   -1.195567908    -2.29034973    At4g36040
254573_at   -1.202527938    -2.30142581    At4g19420
263352_at   -1.210116357    -2.31356295    At2g22080
264467_at   -1.219618864    -2.32885185    At1g10140
246949_at   -1.223189618    -2.33462303    At5g25140
245431_at   -1.225206202    -2.33788862    At4g17080
252300_at   -1.240210954    -2.36233072    At3g49160
255511_at   -1.245585498    -2.37114765    At4g02075
254919_at     -1.248094643    -2.37527515    At4g11360
264217_at     -1.255390925    -2.38731829    At1g60190
267337_at     -1.262182301     -2.3985829    At2g39980
256337_at     -1.270517217    -2.41248039    At1g72060
263133_at     -1.279097127     -2.4268705    At1g78450
263935_at     -1.284349221    -2.43572156    At2g35930
263799_at     -1.293112939    -2.45056249    At2g24550
250098_at      -1.30162606    -2.46506563    At5g17350
262259_s_at   -1.323687297    -2.50305032    At1g53870
266259_at     -1.328323565    -2.51110711    At2g27830
255926_at      -1.33722692    -2.52665191    At1g22190
253859_at     -1.344802327    -2.53995393    At4g27657
261135_at     -1.352724621    -2.55393998    At1g19610
253830_at     -1.365701341    -2.57701573    At4g27652
250114_s_at   -1.368007256    -2.58113796    At5g16340
245777_at     -1.372572906    -2.58931934    At1g73540
252250_at     -1.400385628    -2.63972132    At3g49790
261984_at     -1.402607637    -2.64379009    At1g33760
256442_at     -1.426235203    -2.68744495    At3g10930
262456_at     -1.426623263    -2.68816792    At1g11260
265478_at     -1.428641045    -2.69193028    At2g15890
258091_at     -1.435437355    -2.70464146    At3g14560
258647_at     -1.444982045    -2.72259435    At3g07870
253872_at     -1.499664713    -2.82776986    At4g27410
266983_at     -1.499970512    -2.82836931    At2g39400
264238_at     -1.536352207    -2.90060171    At1g54740
261901_at        -1.5487578   -2.92565124    At1g80920
248622_at     -1.566745122     -2.9623562    At5g49360
249862_at     -1.586946492    -3.00412843    At5g22920
263019_at     -1.592382882        -3.01547   At1g23870
256772_at     -1.593771018    -3.01837283    At3g13750
246114_at     -1.601326149    -3.03422096    At5g20250
266072_at     -1.617497212    -3.06842264    At2g18700
254832_at     -1.645480297    -3.12851993    At4g12490
245757_at     -1.645954187    -3.12954775    At1g35140
247954_at     -1.706154736    -3.26289992    At5g56870
266617_at     -1.714266556    -3.28129785    At2g29670
248606_at     -1.725502677    -3.30695331    At5g49450
258225_at     -1.728361179    -3.31351208    At3g15630
267477_at     -1.753844746    -3.37256149    At2g02710
251642_at     -1.803038853     -3.4895448    At3g57520
267238_at     -1.820947076    -3.53313059    At2g44130
265387_at     -1.905115269    -3.74538823    At2g20670
249923_at     -1.927982016    -3.80522567    At5g19120
262986_at     -1.950703837    -3.86563075    At1g23390
253874_at     -2.103679754    -4.29804252    At4g27450
252367_at     -2.115840403    -4.33442435    At3g48360
251039_at      -2.16751282     -4.4924823    At5g02020
259751_at     -2.188440217    -4.55812414    At1g71030
267357_at     -2.226534926    -4.68008563    At2g40000
258402_at   -2.266081936   -4.81015017   At3g15450
259188_at   -2.350333719   -5.09942195   At3g01510
253061_at   -2.351560326   -5.10375942   At4g37610
253161_at   -2.356201076   -5.12020324   At4g35770
251356_at   -2.398171197   -5.27134529   At3g61060
260287_at   -2.701548276   -6.50499648   At1g80440
at are significantly different in abundance at the 95% confidence level between lsf1 (At3g01510) and Col0. The log2 ratio (lsf1 :Col0) and the fold chan

                    Description
                    putative protein similar to unknown protein (gb|AAC72543.1)
                    hypothetical protein
                    putative protein similar to unknown protein (emb CAB62461.1);supported by full-length cDNA: Ceres:268701.
                    hypothetical protein predicted by genemark.hmm
                    unknown protein contains similarity to UDPG glucosyltransferase GB:AAB62270 GI:2232354 from [Solanum berthaultii];supported
                    PSII low MW protein
                    unknown protein
                     cytochrome b6-f complex, subunit V
                    unknown protein ;supported by full-length cDNA: Ceres:96816.
                    hypothetical protein
                    ATPase alpha subunit
                     F5A9.10 unknown protein; similar to ESTs dbj AV530941.1, dbj|AV530975.1, gb|BE037999.1, gb|BE037993.1, gb|AI995009.1, gb|
                     nucleoid DNA-binding - like protein nucleoid DNA-binding protein cnd41, chloroplast, common tobacco, PIR:T01996; supported by
                    PRH26 protein ;supported by full-length cDNA: Ceres:36866.
                    putative protein
                     phosphoethanolamine N-methyltransferase, putative similar to GI:7407189 from [Spinacia oleracea]
                    cytochrome P450
                    putative xyloglucan endotransglycosylase ;supported by full-length cDNA: Ceres:17748.
                    putative extensin
                    5-adenylylsulfate reductase ;supported by full-length cDNA: Ceres:40330.
                    unknown protein
                    putative hydroxymethyltransferase similar to serine hydroxymethyltransferage GB:P50433 from [Solanum tuberosum];supported b
                    unknown protein ;supported by full-length cDNA: Ceres:16387.
                    NADH dehydrogenase ND2
                     putative protein cation transport protein chaC, Escherichia coli, PIR:G64868
                    Expressed protein ; supported by full-length cDNA: Ceres: 6490.
                    cytochrome b/f
                    hypothetical protein predicted by genscan and genefinder
                     flower development protein cycloidea (cyc3), putative similar to flower development protein cycloidea (cyc3) GI:6358611 from [M
                     dTDP-glucose 4,6-dehydratase, putative similar to dTDP-glucose 4,6-dehydratase GI:5921157 from [Streptomyces avermitilis]; sup
                    Unknown protein ; supported by full-length cDNA: Ceres: 28033.
                    putative glucanse
                     S-adenosyl-L-homocysteinase, putative similar to S-adenosyl-L-homocysteinase GB:AAD56048 from [Lupinus luteus]; supported by
                    phosphoserine aminotransferase ;supported by full-length cDNA: Ceres:34272.
                     putative protein probable arabinogalactan protein precursor, Lycopersicon esculentum, PIR2:S55925; supported by cDNA: gi_1193
                    unknown protein similar to GP|2244827|gnl|PID|e326818|Z97336
                    actin 11 (ACT11) identical to actin 11 (ACT11) SP:P53496 (Plant J. 10:189-202(1996));supported by full-length cDNA: Ceres:38101.
                    unknown protein
                    2-dehydro-3-deoxyphosphoheptonate aldolase ; supported by cDNA: gi_166687_gb_M74819.1_ATHDHS1
                    ATPase I subunit
                     disease resistance protein, putative similar to Hcr2-5b GB:AAC78595 [Lycopersicon esculentum] (Plant Cell 10, 1915-1926 (1998))
                     protein kinase C-receptor/G-protein, putative similar to uanine nucleotide binding protein (G protein), beta polypeptide GB:NP_00
                    60S ribosomal protein L27
                    heat shock protein (emb|CAA72514.1)
                    putative thioredoxin similar to protein disulfide isomerase precursor GB:P29828 [Medicago sativa]; Pfam HMM hit: Thioredoxins
                    unknown protein ; supported by cDNA: gi_16974597_gb_AY060575.1_
                     putative protein latex protein allergen Hev b 7 - Hevea brasiliensis, EMBL:AF113546; supported by cDNA: gi_15912226_gb_AY056
unknown protein ; supported by full-length cDNA: Ceres: 22588.
 arabinogalactan-protein homolog arabinogalactan-protein - Arabidopsis thaliana,PID:g3883126; supported by cDNA: gi_10880496
unknown protein ;supported by full-length cDNA: Ceres:108595.
hypothetical protein similar to hypothetical protein GI:6524175 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:3
bZIP transcription factor ATB2
unknown protein ;supported by full-length cDNA: Ceres:15495.
nhp2-like protein high mobility group-like nuclear protein 2 (nhp2) - Saccharomyces cerevisiae; supported by cDNA: gi_14190414_
formin-like protein
luminal binding protein ; supported by cDNA: gi_1303694_dbj_D84414.1_ATHBIPA
heat-shock protein (At-hsc70-3) identical to (At-hsc70-3) (cytosolic Hsp70) GB:CAA76606 [Arabidopsis thaliana]; supported by cDN
 40S ribosomal protein S2 homolog 40S ribosomal protein S2 - Arabidopsis thaliana, SWISSPROT:RS2_ARATH;supported by full-leng
unknown protein
putative protein
putative s-adenosylmethionine synthetase similar to S-ADENOSYLMETHIONINE SYNTHETASE GB:Q96552 from [Catharanthus roseu
 SAR DNA binding protein, putative similar to SAR DNA binding protein GB:BAA31260 GI:3288883 from [Oryza sativa];supported b
 putative pollen surface protein endosperm specific protein - Zea mays, PID:g2104712;supported by full-length cDNA: Ceres:4620.
4-coumarate:CoA ligase 3 identical to 4-coumarate:CoA ligase 3 GI:5702190 from [Arabidopsis thaliana]; supported by cDNA: gi_57
hypothetical protein predicted by genscan
3-keto-acyl-CoA thiolase 2 (gb|AAC17877.1) ; supported by cDNA: gi_3192892_gb_AF062590.1_AF062590
 chloroplast nucleoid DNA binding protein, putative similar to chloroplast nucleoid DNA binding protein GB:BAA22813 GI:2541876
ATP-sulfurylase ; supported by cDNA: gi_459143_gb_U06275.1_ATU06275
putative proline-rich protein ; supported by full-length cDNA: Ceres: 28853.
 bystin, putative similar to bystin GI:1160618 from [Homo sapiens]
unknown protein
anter-specific proline-rich -like protein (APG-like) similar to anter-specific proline-rich protein (APG) SP:P40602 [Arabidopsis thalian
putative protein ;supported by full-length cDNA: Ceres:97866.
putative U1 small nuclear ribonucleoprotein 70 kDa
hypothetical protein similar to hypothetical protein GB:CAB45785 GI:5262156 from [Arabidopsis thaliana];supported by full-length
hypothetical protein similar to hypothetical protein GB:AAF25987 GI:6714291 from [Arabidopsis thaliana]
 putative protein PGPD14 - Petunia x hybrida, EMBL:AF049930
 putative protein RING-H2 finger protein RHA3a - Arabidopsis thaliana, EMBL:AF078824
putative DnaJ protein ;supported by full-length cDNA: Ceres:22711.
unknown protein ;supported by full-length cDNA: Ceres:16144.
AKIN beta1 ; supported by full-length cDNA: Ceres: 41668.
glutamate dehydrogenase (EC 1.4.1.-) 1 (pir||S71217) ; supported by cDNA: gi_15146203_gb_AY049243.1_
unknown protein ; supported by cDNA: gi_14190364_gb_AF378860.1_AF378860
 putative myb-related transcription factor Similar to myb-related transcription factor (THM27) gb|X95296 from Solanum lycopersic
putative protein predicted proteins - Arabidopsis thaliana
 auxin-induced protein, putative similar to SP:P33083 from [Glycine max];supported by full-length cDNA: Ceres:147801.
 putative protein predicted proteins, Arabidopsis thaliana
hypothetical protein predicted by genscan+
putative protein contains similarity to glucose regulated repressor protein; supported by cDNA: gi_15809999_gb_AY054268.1_
putative protein similar to unknown protein (pir||T08411);supported by full-length cDNA: Ceres:93374.
 putative protein probable transcription regulator protein - Sorghum bicolor,PIR2:T03446;supported by full-length cDNA: Ceres:341
 disease resistance protein, putative similar to disease resistance protein GI:9758876 from [Arabidopsis thaliana]
hypothetical protein similar to hypothetical protein GB:AAF24593 GI:6692128 from [Arabidopsis thaliana]
 putative protein various predicted proteins, Arabidopsis thaliana;supported by full-length cDNA: Ceres:115372.
RNA-binding protein-like protein various RNA-binding proteins;supported by full-length cDNA: Ceres:9763.
putative protein contains similarity to unknown protein (gb AAF19567.1)
hypothetical protein
putative cytoskeletal protein ; supported by cDNA: gi_1732508_gb_U62741.1_ATU62741
Expressed protein ; supported by full-length cDNA: Ceres: 11425.
putative protein ; supported by cDNA: gi_15529263_gb_AY052256.1_
hypothetical protein predicted by genemark.hmm; supported by cDNA: gi_15450370_gb_AY052286.1_
putative protein hypothetical proteins - Arabidopsis thaliana;supported by full-length cDNA: Ceres:42528.
unknown protein similar to hypothetical protein GB:AAC17612 [Arabidopsis thaliana];supported by full-length cDNA: Ceres:251012
putative protein ER6 protein - Lycopersicon esculentum, EMBL:AF096262; supported by cDNA: gi_14334945_gb_AY035146.1_
unknown protein ;supported by full-length cDNA: Ceres:158528.
hypothetical protein predicted by genemark.hmm; supported by full-length cDNA: Ceres: 126401.
putative beta-alanine-pyruvate aminotransferase ;supported by full-length cDNA: Ceres:147543.
TINY-like protein
Expressed protein ; supported by cDNA: gi_15809953_gb_AY054245.1_
DNA-binding protein ;supported by full-length cDNA: Ceres:28019.
UDP-glucose glucosyltransferase, putative similar to UDP-glucose glucosyltransferase GI:3928543 from [Arabidopsis thaliana]
putative protein ;supported by full-length cDNA: Ceres:118329.
trehalose-6-phosphate synthase, putative similar to trehalose-6-phosphate synthase GI:297792 from [Kluyveromyces lactis]
putative protein Arabidopsis thaliana RMA1 mRNA, PID:d1029538
hypothetical protein predicted by genemark.hmm; supported by cDNA: gi_16648778_gb_AY058166.1_
trehalose-6-phosphate synthase, putative similar to trehalose-6-phosphate synthase GI:297792 from [Kluyveromyces lactis]
unknown protein
putative protein ; supported by full-length cDNA: Ceres: 40302.
hypothetical protein predicted by genscan and genefinder; supported by cDNA: gi_16649128_gb_AY059934.1_
putative protein ;supported by full-length cDNA: Ceres:10077.
unknown protein ; supported by cDNA: gi_11907565_gb_AF123315.1_AF123315
putative protein hypothetical protein F10M6.70 - Arabidopsis thaliana,PIR3:T05399; supported by cDNA: gi_15293266_gb_AY051
unknown protein
hypothetical protein
putative beta-1,3-glucanase ;supported by full-length cDNA: Ceres:1126.
hypothetical protein predicted by genscan+;supported by full-length cDNA: Ceres:250127.
cytochrome P450 monooxygenase (CYP71B3) identical to cytochrome P450 monooxygenase (CYP71B3) GB:D78602 [Arabidopsis t
hypothetical protein predicted by genefinder; supported by cDNA: gi_14994264_gb_AY044326.1_
hypothetical protein ;supported by full-length cDNA: Ceres:36892.
unknown protein
unknown protein weak similarity to C3HC4 zinc finger;supported by full-length cDNA: Ceres:156298.
putative protein predicted proteins, Arabidopsis thaliana;supported by full-length cDNA: Ceres:16638.
hypothetical protein
unknown protein
putative protein unknown protein At2g44130 - Arabidopsis thaliana, EMBL:AC004005;supported by full-length cDNA: Ceres:8014.
putative CCCH-type zinc finger protein identical to GB:U81238;supported by full-length cDNA: Ceres:39893.
putative glucosyltransferase ;supported by full-length cDNA: Ceres:34407.
unknown protein
unknown protein predicted by genefinder, multiple est matches;supported by full-length cDNA: Ceres:7073.
DnaJ-like protein DnaJ-like protein, Phaseolus vulgaris, PATX:G1684851
putative pectinacetylesterase pectinacetylesterase precursor, Vigna radiata, PIR2:S68805
En/Spm-like transposon protein related to En/Spm transposon family of maize
unknown protein similar to EST gb|AA598098;supported by full-length cDNA: Ceres:23916.
cytochrome P450-like protein CYTOCHROME P450 71B1 - Thlaspi arvense, EMBL:L24438
hypothetical protein
pyruvate kinase -like protein various pyruvate kinases from procaryotes
Expressed protein ; supported by cDNA: gi_4741922_gb_AF130849.1_AF130849
RING-H2 finger protein RHA1b ;supported by full-length cDNA: Ceres:37097.
hypothetical protein predicted by genemark.hmm
putative anthocyanin 5-aromatic acyltransferase ; supported by cDNA: gi_13937225_gb_AF372968.1_AF372968
unknown protein
hypothetical protein predicted by genemark.hmm;supported by full-length cDNA: Ceres:5677.
unknown protein
unknown protein ; supported by cDNA: gi_15724183_gb_AF411794.1_AF411794
putative protein ;supported by full-length cDNA: Ceres:1198.
hypothetical protein predicted by genemark.hmm;supported by full-length cDNA: Ceres:1094.
unknown protein ;supported by full-length cDNA: Ceres:33700.
 AP2 domain containing protein RAP2, putative similar to AP2 domain containing protein RAP2.4 GI:2281633 from [Arabidopsis tha
Expressed protein ; supported by full-length cDNA: Ceres: 12935.
 defensin AMP1, putative similar to PIR:S66219 from [Clitoria ternatea]
Expressed protein ; supported by full-length cDNA: Ceres: 42507.
AMP-binding protein
unknown protein contains similarity to diphosphoinositol polyphosphate phosphohydrolase GI:3978224 from [Homo sapiens]
 putative protein predicted protein, Arabidopsis thaliana
TINY-like protein similar to TINY GB: CAA64359 GI:1246403 from [Arabidopsis thaliana]
hypothetical protein predicted by genefinder;supported by full-length cDNA: Ceres:12509.
glucose transporter almost identical to glucose transporter GB:P23586 from [Arabidopsis thaliana]; supported by full-length cDNA:
unknown protein ;supported by full-length cDNA: Ceres:29905.
hypothetical protein predicted by genmark;supported by full-length cDNA: Ceres:19279.
unknown protein ; supported by cDNA: gi_15983478_gb_AF424614.1_AF424614
 putative protein Arabidopsis thaliana nap gene,PID:e1234813;supported by full-length cDNA: Ceres:38344.
putative phospholipase ; supported by cDNA: gi_14532651_gb_AY039950.1_
hypothetical protein predicted by genscan+
J8-like protein similar to DnaJ homologue J8 GB:AAC72399 GI:3851670 from [Arabidopsis thaliana];supported by full-length cDNA:
xylosidase
PGPD14 protein ;supported by full-length cDNA: Ceres:41666.
 trehalose 6-phosphate synthase, putative similar to trehalose 6-phosphate synthase GB:CAA09463 GI:3647365 from [Yarrowia lip
 galactosidase, putative similar to BETA-GALACTOSIDASE PRECURSOR (LACTASE) GB:P48980 from [Lycopersicon esculentum]
 seed imbitition protein-like seed imbitition protein Sip1 - Hordeum vulgare, EMBL:M77475
putative trehalose-6-phosphate synthase
 pEARLI 1-like protein Arabidopsis thaliana pEARLI 1 mRNA, PID:g871780; supported by cDNA: gi_15450470_gb_AY052336.1_
 phosphate-induced (phi-1) protein, putative similar to phi-1 GB:BAA33810 GI:3759184 from [Nicotiana tabacum];supported by ful
beta-galactosidase (emb|CAB64740.1) ; supported by cDNA: gi_15451017_gb_AY054589.1_
unknown protein ; supported by cDNA: gi_14030738_gb_AF375460.1_AF375460
putative protein contains similarity to bZIP transcription factor;supported by full-length cDNA: Ceres:43004.
unknown protein ; supported by cDNA: gi_15529233_gb_AY052241.1_
putative receptor-like protein kinase
 imbibition protein homolog probable imbibition protein - Brassica oleracea, PIR:S45033; supported by cDNA: gi_15292676_gb_AY
unknown protein ;supported by full-length cDNA: Ceres:6950.
unknown protein ;supported by full-length cDNA: Ceres:34827.
 conglutin gamma - like protein conglutin gamma precursor, Lupinus angustifolius, PIR:S21426; supported by cDNA: gi_15010797_
unknown protein similar to hypothetical protein GB:AAF27090 GI:6730669 from (Arabidopsis thaliana);supported by full-length cD
 putative protein stem-specific protein - Nicotiana tabacum,PID:g20037;supported by full-length cDNA: Ceres:35207.
 putative protein MEL-26, Caenorhabditis elegans, U67737; supported by cDNA: gi_14532781_gb_AY040015.1_
 putative protein hypothetical protein T6H20.90 - Arabidopsis thaliana, EMBL:AL096859; supported by cDNA: gi_16648747_gb_AY
putative transcription factor similar to myb-related transcription factor 24 GB:S71287;supported by full-length cDNA: Ceres:31592
putative nematode-resistance protein ;supported by full-length cDNA: Ceres:35056.
unknown protein very similar to unknown protein GB:AAC39468 from [Arabidopsis thaliana]; supported by cDNA: gi_14335087_gb
unknown protein ;supported by full-length cDNA: Ceres:249634.
 putative protein SPOP, Homo sapiens, AJ000644;supported by full-length cDNA: Ceres:122670.
senescence-associated protein sen1 identical to senescence-associated protein GI:1046270 from [Arabidopsis thaliana] ;supported
putative protein hypothetical proteins - Arabidopsis thaliana; supported by cDNA: gi_14334587_gb_AY034967.1_
unknown protein contains two Kelch motifs; supported by full-length cDNA: Ceres: 32885.
[Solanum berthaultii];supported by full-length cDNA: Ceres:1040.




BE037993.1, gb|AI995009.1, gb|AI099531.1, gb|N37906.1, gb|T76894.1
bacco, PIR:T01996; supported by full-length cDNA: Ceres: 8987.




 olanum tuberosum];supported by full-length cDNA: Ceres:122515.




oidea (cyc3) GI:6358611 from [Misopates orontium]; supported by cDNA: gi_3243273_gb_AF072134.1_AF072134
m [Streptomyces avermitilis]; supported by cDNA: gi_14596090_gb_AY042833.1_


m [Lupinus luteus]; supported by cDNA: gi_15292698_gb_AY050783.1_

925; supported by cDNA: gi_11935087_gb_AF305940.1_AF305940

 full-length cDNA: Ceres:38101.




Plant Cell 10, 1915-1926 (1998)); contains Pfam profile: PF00560 leucine rich repeat (20 copies)
ein), beta polypeptide GB:NP_006089 [Homo sapiens]; contains Pfam profile: PF00400 WD domain, G-beta repeat (7 copies); supported by cDNA: gi_1


 ; Pfam HMM hit: Thioredoxins

y cDNA: gi_15912226_gb_AY056391.1_
 upported by cDNA: gi_10880496_gb_AF195891.1_AF195891

rted by full-length cDNA: Ceres:3618.


pported by cDNA: gi_14190414_gb_AF378885.1_AF378885


psis thaliana]; supported by cDNA: gi_15292924_gb_AY050896.1_
S2_ARATH;supported by full-length cDNA: Ceres:101250.


 96552 from [Catharanthus roseus];supported by full-length cDNA: Ceres:326.
 from [Oryza sativa];supported by full-length cDNA: Ceres:31447.
by full-length cDNA: Ceres:4620.
 liana]; supported by cDNA: gi_5702191_gb_AF106088.1_AF106088


otein GB:BAA22813 GI:2541876 from [Nicotiana tabacum];supported by full-length cDNA: Ceres:7567.




G) SP:P40602 [Arabidopsis thaliana (Mouse-ear cress)]; supported by cDNA: gi_15054385_gb_AY028611.1_


haliana];supported by full-length cDNA: Ceres:3998.




X95296 from Solanum lycopersicum. ESTs gb|T42000, gb|T04118, gb|AA598042, gb|AA394757 and gb|AA598046 come from this gene; supported by

 cDNA: Ceres:147801.


_15809999_gb_AY054268.1_

ed by full-length cDNA: Ceres:34151.
y full-length cDNA: Ceres:251012.
_14334945_gb_AY035146.1_




from [Arabidopsis thaliana]

om [Kluyveromyces lactis]


om [Kluyveromyces lactis]




 cDNA: gi_15293266_gb_AY051067.1_




71B3) GB:D78602 [Arabidopsis thaliana] (Plant Mol. Biol. 37 (1), 39-52 (1998)); supported by cDNA: gi_3164133_dbj_D78602.1_D78602




by full-length cDNA: Ceres:8014.
I:2281633 from [Arabidopsis thaliana]; supported by cDNA: gi_15292782_gb_AY050825.1_




78224 from [Homo sapiens]




; supported by full-length cDNA: Ceres: 33727.




];supported by full-length cDNA: Ceres:4150.


3 GI:3647365 from [Yarrowia lipolytica]
Lycopersicon esculentum]


5450470_gb_AY052336.1_
tiana tabacum];supported by full-length cDNA: Ceres:118937.




d by cDNA: gi_15292676_gb_AY050772.1_


pported by cDNA: gi_15010797_gb_AY045700.1_
ana);supported by full-length cDNA: Ceres:101865.


d by cDNA: gi_16648747_gb_AY058150.1_
y full-length cDNA: Ceres:31592.
orted by cDNA: gi_14335087_gb_AY037223.1_


Arabidopsis thaliana] ;supported by full-length cDNA: Ceres:13699.
ta repeat (7 copies); supported by cDNA: gi_15215619_gb_AY050338.1_
AA598046 come from this gene; supported by cDNA: gi_3941409_gb_AF062859.1_AF062859
64133_dbj_D78602.1_D78602
Table S1. This sheet shows transcripts that are significantly different in abundance at the 95% confidence level between sex4 (At3

       Affy Probe             log2 ratio    Fold change         AGI number
248676_at                    1.850900118     3.607251763   At5g48850
263268_at                    1.630415468     3.096021452   At2g16590
244990_s_at                  1.498033964     2.824575304   orf77.1
244966_at                    1.424364498      2.68396247   petG
AFFX-Athal-5SrRNA_at         1.403274891     2.645013143   AFFX-Athal-5SrRNA
249752_at                    1.203637738     2.303196878   At5g24660
265837_at                    1.141767115     2.206511269   At2g14560
261684_at                      1.12673924    2.183646373   At1g47400
258419_at                    1.101027187     2.145073656   At3g16670
254343_at                    1.093691724     2.134194591   At4g21990
244991_s_at                    1.07079198    2.100586185   ndhB.1
263046_at                    1.062937006     2.089180301   At2g05380
258897_at                    1.033737625     2.047321433   At3g05730
260126_at                    1.026224003     2.036686605   At1g36370
245035_at                    1.023567409      2.03293968   At2g26400
245005_at                      0.99489956    1.992941772   rps14
257895_at                    0.972294505     1.961958472   At3g16950
257382_at                    0.954030058     1.937276741   At2g40750
247443_at                   -1.039328046    -2.055270162   At5g62720
264016_at                   -1.062819016    -2.089009446   At2g21220
262719_at                   -1.189101103    -2.280106328   At1g43590
257021_at                   -1.947899939    -3.858125142   At3g19710
256676_at                   -3.072228198    -8.410713532   At3g52180
erent in abundance at the 95% confidence level between sex4 (At3g52180) and Col0. The log2 ratio (sex4 :Col0) and the fold change (sex4 /Col0) are g

                   Description
                   putative protein similar to unknown protein (gb|AAC72543.1)
                   unknown protein
                   hypothetical protein
                    cytochrome b6-f complex, subunit V
                   Arabidopsis thaliana /REF=M65137 /DEF=5S ribosomal RNA gene, complete cds /LEN=497
                   putative protein similar to unknown protein (emb CAB62461.1);supported by full-length cDNA: Ceres:268701.
                   unknown protein
                   hypothetical protein predicted by genemark.hmm
                   unknown protein
                   PRH26 protein ;supported by full-length cDNA: Ceres:36866.
                   NADH dehydrogenase ND2
                   unknown protein ; supported by cDNA: gi_15146251_gb_AY049267.1_
                   unknown protein
                   putative hydroxymethyltransferase similar to serine hydroxymethyltransferage GB:P50433 from [Solanum tuberosum];supported b
                   unknown protein similar to GP|2244827|gnl|PID|e326818|Z97336
                   ribosomal protein S14
                    dihydrolipoamide dehydrogenase, putative similar to dihydrolipoamide dehydrogenase GB:CAA88451 [Synechocystis PCC6803] (M
                   hypothetical protein predicted by genscan and genefinder
                    putative protein predicted proteins, Arabidopsis thaliana; supported by full-length cDNA: Ceres: 38273.
                   putative auxin-regulated protein
                   hypothetical protein predicted by genscan+
                    branched-chain amino acid aminotransferase, putative similar to branched-chain amino acid aminotransferase GB:AAF07192 from
                   putative protein ;supported by full-length cDNA: Ceres:114734.
olanum tuberosum];supported by full-length cDNA: Ceres:122515.


451 [Synechocystis PCC6803] (Microbiology 143 (Pt 11), 3543-3553 (1997)); supported by cDNA: gi_15215695_gb_AY050376.1_




otransferase GB:AAF07192 from [Solanum tuberosum];supported by full-length cDNA: Ceres:38004.
15695_gb_AY050376.1_

				
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