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nature04915 s08
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Information for genes used in the over-expression studies





Gene Symbol UniGene

Alternative Symbol ID RefSeq Transcript ID Gene Description

Acin1 Acin1 Mm.297078 NM_019567, NM_023190 apoptotic chromatin condensation inducer 1

Acvr1 Acvr1 Mm.689 NM_007394 activin A receptor, type 1

Acvrl1 Acvrl1 Mm.279542 NM_009612 activin A receptor, type II-like 1

Aff3 Laf4 Mm.336679 NM_010678 AF4/FMR2 family, member 3

Amn Amn Mm.197639 NM_033603.2 amnionless

Ankrd1 Ankrd1 Mm.10279 NM_013468 ankyrin repeat domain 1 (cardiac muscle)

Ankrd10 Ankrd10 Mm.12459 NM_133971.1 ankyrin repeat domain 10

Arhgef5 Arhgef5 Mm.320978 XM_133067 Rho guanine nucleotide exchange factor (GEF) 5

Arid3a Arid3a Mm.301282 NM_007880 AT rich interactive domain 3A (Bright like)

Arl4 Arl4 Mm.12723 NM_007487 ADP-ribosylation factor-like 4

Armcx2 Alex2 Mm.285969 NM_026139 armadillo repeat containing, X-linked 2

Ascl2 Ascl2 Mm.196417 NM_008554 achaete-scute complex homolog-like 2 (Drosophila)

Atf3 ATF3 Mm.2706 NM_007498 activating transcription factor 3

Axl Axl Mm.4128 NM_009465 AXL receptor tyrosine kinase

Basp1 Basp1 Mm.29586 NM_027395 brain abundant, membrane attached signal protein 1

Bbx Bbx-hi Mm.28940 NM_027444 bobby sox homolog (Drosophila)

Bhlhb2 Bhlhb2 Mm.2436 NM_011498 basic helix-loop-helix domain containing, class B2

Birc4 Birc4 Mm.259879 NM_009688.1 baculoviral IAP repeat-containing 4

Bmi1 Pcgf4 Mm.289584 NM_007552.3 B lymphoma Mo-MLV insertion region 1

Bmpr1a Bmpr1a Mm.237825 NM_009758 bone morphogenetic protein receptor, type 1A

Bmpr1b Bmpr1b Mm.39089 NM_007560 bone morphogenetic protein receptor, type 1B

Cbfb Cbfb Mm.2018 NM_022309 core binding factor beta

Cdx2 Cdx2 Mm.20358 NM_007673 caudal type homeo box 2

Cebpa Cebpa Mm.349667 NM_007678 CCAAT/enhancer binding protein (C/EBP), alpha

Cebpb Cebpb Mm.347406 NM_009883 CCAAT/enhancer binding protein (C/EBP), beta

Cebpd Cebpd Mm.347407 NM_007679.2 CCAAT/enhancer binding protein (C/EBP),

Cited1 Cited1 Mm.2390 NM_007709 Cbp/p300-interacting transactivator with Glu/Asp-rich

Cited4 Cited4 Mm.272646 NM_019563 Cbp/p300-interacting transactivator, with Glu/Asp-ric

Cln6 Cln6 Mm.283636 NM_001033175.1 ceroid-lipofuscinosis, neuronal 6

Creb3 Creb3 Mm.12407 NM_013497 cAMP responsive element binding protein 3

Ctbp2 Ctbp2 Mm.383174 NM_009980 C-terminal binding protein 2

Ctcf Ctcf Mm.269474 NM_007794, NM_181322CCCTC-binding factor

Ctgf Ctgf Mm.1810 NM_010217 connective tissue growth factor

Cyr61 Cyr61 Mm.1231 NM_010516 cysteine rich protein 61

Dab2 Dab2 Mm.240830 disabled homolog 2 (Drosophila)

NM_001008702, NM_023118

Dll1 Dll1 Mm.4875 NM_007865 delta-like 1 (Drosophila)

Dlx3 Dlx3 Mm.5194 NM_010055 distal-less homeobox 3

Dmrt1 Dmrt1 Mm.88852 NM_015826 doublesex and mab-3 related transcription factor 1

Dppa3 Dppa3 Mm.27982 NM_139218 developmental pluripotency-associated 3

E2f6 E2F6 Mm.23296 NM_033270 E2F transcription factor 6

Ebf2 Ebf2 Mm.319947 NM_010095 early B-cell factor 2

Elf2 Elf2 Mm.131038 NM_023502 E74-like factor 2

Esx1 Esx1 Mm.8017 NM_007957 extraembryonic, spermatogenesis, homeobox 1

Ets2 Ets2 Mm.290207 NM_011809 E26 avian leukemia oncogene 2, 3' domain

Etv3 Etv3 Mm.219460 NM_012051 ets variant gene 3

Fgf15 Fgf15 Mm.3904 NM_008003 fibroblast growth factor 15

Fgfbp1 Fgfbp1 Mm.46053 NM_008009 fibroblast growth factor binding protein 1

Fgfrl1 Fgfr5 Mm.35691 NM_054071 fibroblast growth factor receptor-like 1

Fhl1 Fhl1 Mm.3126 NM_010211 four and a half LIM domains 1

Fhl2 Fhl2 Mm.6799 NM_010212 four and a half LIM domains 2

Fos Fos Mm.246513 NM_010234 FBJ murine osteosarcoma viral oncogene homolog

Foxp1 FoxP1 Mm.234965 NM_053202 forkhead box P1

Foxq1 FoxQ1 Mm.44235 NM_008239 forkhead box Q1

Fst Fst Mm.4913 NM_008046 follistatin

Fstl1 Fstl Mm.182434 NM_008047 follistatin-like 1

Fzd7 Fzd7 Mm.297906 NM_008057 frizzled homolog 7 (Drosophila)

Gata1 Gata1 Mm.335973 NM_008089 GATA binding protein 1

Gata2 Gata2 Mm.272747 NM_008090 GATA binding protein 2

Gata3 Gata3 Mm.313866 NM_008091 GATA binding protein 3

Glis2 Glis2 Mm.134072 NM_031184 GLIS family zinc finger 2

Gng10 Gng10 Mm.41780 NM_025277 guanine nucleotide binding protein (G protein), gamm

Gpc3 Gpc3 Mm.22515 NM_016697 glypican 3

Hand1 Hand1 Mm.4746 NM_008213 heart and neural crest derivatives expressed transcri

Hbegf Dtr Mm.289681 NM_010415 heparin-binding EGF-like growth factor

Hipk2 Hipk2 Mm.23790 NM_010433 homeodomain interacting protein kinase 2

Hmgb1 Hmgb1 Mm.378939 NM_010439 high mobility group box 1

Hmgn3a Hmgn3a Mm.244426 NM_026122.1 high mobility group nucleosomal binding do

Hoxa1 HoxA1 Mm.197 NM_010449 homeo box A1

Hoxd9 HoxD9 Mm.26544 NM_013555 homeo box D9

Id2 Id2 Mm.34871 NM_010496 inhibitor of DNA binding 2

Irak1bp1 Irak1bp1 Mm.41415 NM_022986.2 interleukin-1 receptor-associated kinase 1 b

Irf1 Irf1 Mm.105218 NM_008390 interferon regulatory factor 1

Irx2 Irx2 Mm.28888 NM_010574 Iroquois related homeobox 2 (Drosophila)

Irx3 Irx3 Mm.238044 NM_008393 Iroquois related homeobox 3 (Drosophila)

Jun Junc Mm.275071 NM_010591 Jun oncogene

Klf6 Copeb/Klf6 Mm.275036 NM_011803 Kruppel-like factor 6

Klf7 Klf7 Mm.29466 NM_033563 Kruppel-like factor 7 (ubiquitous)

Lbh Lbh Mm.154109 NM_029999 limb-bud and heart

Ldb1 Ldb1 Mm.327442 NM_010697 LIM domain binding 1

Lef1 Lef1 Mm.255219 NM_010703 lymphoid enhancer binding factor 1

Lefty1 Lefty1 Mm.378911 NM_010094 left right determination factor 1

Limd1 Limd1 Mm.10987 NM_013860 LIM domains containing 1

Lin28 Lin28 Mm.302567 NM_145833 lin-28 homolog (C. elegans)

Lmo6 Lmo6 Mm.232232 NM_175097.2 LIM domain only 6

Lrpap1 Lrpap1 Mm.277661 NM_013587 low density lipoprotein receptor-related protein assoc

Lrrc1 Lrrc1 Mm.28534 NM_172528.2 ieucine rich repeat containing 1

Lzic Lzic Mm.332085 NM_026963 leucine zipper and CTNNBIP1 domain containing

Lztr1 Lztr1 Mm.161726 NM_025808 leucine-zipper-like transcriptional regulator, 1

Lzts2 Lzts2 Mm.28204 NM_145503 leucine zipper, putative tumor suppressor 2

Mbnl2 Mbnl2 Mm.238266 m

NM_175341, NM_207515 uscleblind-like 2

Mbnl3 Mbnl3 Mm.295324 NM_134163.4 muscleblind-like 3

Mdfi Mdfi Mm.329100 NM_010783 MyoD family inhibitor

Mid1ip1 Mid1ip1 Mm.29429 NM_026524.2 mid1 interacting protein 1

Morc4 Zcwcc2 Mm.23269 NM_029413 microrchidia 4

Msl31 Msl31 Mm.24248 NM_010832 male-specific lethal-3 homolog 1 (Drosophila)

Myc Myc Mm.2444 NM_010849 myelocytomatosis oncogene

Ncoa2 Ncoa2 Mm.2537 NM_008678 nuclear receptor coactivator 2

Ndp52 Ndp52 Mm.296049 XM_203409 nuclear domain 10 protein 52

Nmyc1 Mycn Mm.16469 NM_008709.2 neuroblastoma myc-related oncogene 1

Nr2f6 Nr2f6 Mm.28989 NM_010150 nuclear receptor subfamily 2, group F, member 6

Nr6a1 Nr6a1 Mm.242728 NM_010264 nuclear receptor subfamily 6, group A, member 1

Otx2 Otx2 Mm.134516 NM_144841 orthodenticle homolog 2 (Drosophila)

Pbx1 Pbx1 Mm.43358 pre

NM_008783, NM_183355 B-cell leukemia transcription factor 1

Pdgfa Pdgfa Mm.2675 NM_008808 platelet derived growth factor, alpha

Pdgfc Pdgfc Mm.331089 NM_019971 platelet-derived growth factor, C polypeptide

Pdlim2 Pdlim2 Mm.283968 NM_145978 PDZ and LIM domain 2

Pea15 Pea15 Mm.544 NM_008556, NM_011063phosphoprotein enriched in astrocytes 15

Phc2 Edr2 Mm.259103 NM_018774 polyhomeotic-like 2 (Drosophila)

Pim1 Pim1 Mm.328931 NM_008842 proviral integration site 1

Pim2 Pim2 Mm.347478 proviral integration site 2

NM_138606.1, NM_145737.2, NM_145736.1

Pitx2 Pitx2 Mm.246804 NM_011098 paired-like homeodomain transcription factor 2

pKnox2 pKnox2 Mm.260335 NM_148950.2 PREP2 mRNA for TALE homeodomain transcription facto

Pnrc1 Pnrc Mm.27769 XM_131355 proline-rich nuclear receptor coactivator 1

Prkd2 Prkd2 Mm.1881 NM_178900 protein kinase D2

Prrx2 Prrx2 Mm.1802 NM_009116 paired related homeobox 2

Ptp4a2 Ptp4a2 Mm.193688 NM_008974 protein tyrosine phosphatase 4a2

Rarg Rarg Mm.1273 NM_011244.2 retinoic acid receptor, gamma

Rbp1 Rbp1 Mm.279741 NM_011254 retinol binding protein 1, cellular

Rcor2 Rcor2 Mm.283859 NM_054048 REST corepressor 2

Rhox5 Pem Mm.6923 NM_008818 reproductive homeobox on X chromosome, 5

Rhox9 Psx2 Mm.156958 NM_023894 reproductive homeobox on X chromosome, 9

Rnf141 Rnf141 Mm.96867 NM_025999 ring finger protein 141

Sall2 Sall2 Mm.39487 NM_015772 sal-like 2 (Drosophila)

Samd4 Samd4 Mm.269139 NM_028966 sterile alpha motif domain containing 4

Satb1 Satb1 Mm.311655 NM_009122 special AT-rich sequence binding protein 1

Sema4b Sema4b Mm.275909 NM_013659 sema domain, immunoglobulin domain (Ig), transme

Skp2 Skp2 Mm.35584 NM_013787, NM_145468S-phase kinase-associated protein 2 (p45)

Smarca2 Brm Mm.313303 NM_011416, NM_026003SWI/SNF related, matrix associated, actin dependen

Smarcd1 Smarcd1 Mm.273756 NM_031842 SWI/SNF related, matrix associated, actin dependen

Snai1 Snai1 Mm.2093 NM_011427 snail homolog 1 (Drosophila)

Sox11 Sox11 Mm.41702 NM_009234 SRY-box containing gene 11

Sox18 Sox18 Mm.264904 NM_009236 SRY-box containing gene 18

Sox7 Sox7 Mm.42162 NM_011446 SRY-box containing gene 7

Sox9 Sox9 Mm.286407 NM_011448 SRY-box containing gene 9

Spry2 Spry2 Mm.89982 NM_011897 sprouty homolog 2 (Drosophila)

Tactd2 Tactd2 Mm.154045 NM_020047.2 tumor-associated calcium signal transducer

Tax1bp1 Tax1bp1 Mm.50424 NM_025816 Tax1 (human T-cell leukemia virus type I) binding pro

Tcf12 Tcf12 Mm.171615 NM_011544 transcription factor 12

Tcfap4 Tcfap4 Mm.273210 NM_031182 transcription factor AP4

Tead1 Tead1 Mm.28081 NM_009346 TEA domain family member 1

Tead2 Tead2 Mm.3019 NM_011565 TEA domain family member 2

Tead3 Tead3 Mm.6655 NM_011566 TEA domain family member 3

Thpok Zbtb7b Mm.262184 NM_009565.4 T helper-inducing POZ/Krueppel factor

Tle6 Tle6 Mm.206764 NM_053254 transducin-like enhancer of split 6, homolog of Droso

Tob2 Tob2 Mm.379085 NM_020507 transducer of ERBB2, 2

Usf1 USF1 Mm.8 NM_009480 upstream transcription factor 1

Wnt9a Wnt9a Mm.218794 NM_139298 wingless-type MMTV integration site 9A

Wwtr1 Wwtr1 Mm.227202 NM_133784 WW domain containing transcription regulator 1

Yaf2 Yaf2 Mm.4714 NM_024189 YY1 associated factor 2

Yy1 Yy1 Mm.3868 NM_009537 YY1 transcription factor

Zbtb36 Zbtb7c Mm.159332 NM_145356.3 Zinc finger and BTB domain containing 7C

Zcchc3 Zcchc3 Mm.18589 NM_175126 zinc finger, CCHC domain containing 3

Zdhhc6 Zdhhc6 Mm.386789 zinc

NM_001033573, NM_025883 finger, DHHC domain containing 6

Zfp1 Zfp1 Mm.4184 NM_011742 zinc finger protein 1

Zfp289 Zfp289 Mm.43636 NM_023854 zinc finger protein 289

Zfp319 Zfp319 Mm.383256 NM_024467 zinc finger protein 319

Zfp364 Zfp364 Mm.386792 NM_026406 zinc finger protein 364

Zfp385 Zfp385 Mm.14099 NM_013866 zinc finger protein 385

Zfp57 Zfp57 Mm.305561 zinc

NM_001013745, NM_009559 finger protein 57

Znrf1 Znrf1 Mm.271578 NM_133206 zinc and ring finger 1

ondensation inducer 1









1 (cardiac muscle)



e exchange factor (GEF) 5

main 3A (Bright like)



ining, X-linked 2

x homolog-like 2 (Drosophila)







rane attached signal protein 1



domain containing, class B2



insertion region 1

rotein receptor, type 1A

rotein receptor, type 1B







ing protein (C/EBP), alpha

ing protein (C/EBP), beta

binding protein (C/EBP), delta

ransactivator with Glu/Asp-rich carboxy-terminal domain 1

ransactivator, with Glu/Asp-rich carboxy-terminal domain, 4



ment binding protein 3









related transcription factor 1

ency-associated 3









matogenesis, homeobox 1

ncogene 2, 3' domain







r binding protein 1

r receptor-like 1







oma viral oncogene homolog









ding protein (G protein), gamma 10



derivatives expressed transcript 1

ke growth factor

ing protein kinase 2



p nucleosomal binding domain 3







tor-associated kinase 1 binding protein 1



obox 2 (Drosophila)

obox 3 (Drosophila)









ding factor 1









receptor-related protein associated protein 1

containing 1

NNBIP1 domain containing

scriptional regulator, 1

e tumor suppressor 2

homolog 1 (Drosophila)









lated oncogene 1

mily 2, group F, member 6

mily 6, group A, member 1

2 (Drosophila)

nscription factor 1

factor, alpha

h factor, C polypeptide



ed in astrocytes 15









ain transcription factor 2

homeodomain transcription factor Prep2

ceptor coactivator 1









tor, gamma





x on X chromosome, 5

x on X chromosome, 9







ain containing 4

nce binding protein 1

oglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B

iated protein 2 (p45)

rix associated, actin dependent regulator of chromatin, subfamily a, member 2

rix associated, actin dependent regulator of chromatin, subfamily d, member 1









calcium signal transducer 2

ukemia virus type I) binding protein 1

/Krueppel factor

er of split 6, homolog of Drosophila E(spl)







ntegration site 9A

g transcription regulator 1







B domain containing 7C

main containing 3

main containing 6


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