Docstoc
EXCLUSIVE OFFER FOR DOCSTOC USERS
Try the all-new QuickBooks Online for FREE.  No credit card required.

Supplementary Table Differentially expressed genes in CD

Document Sample
Supplementary Table Differentially expressed genes in CD Powered By Docstoc
					Supplementary Table 10: Differentially expressed genes in CD14 monocytes discriminating SLE,
AAV and control samples
Probe ID      GenBank Acc      Gene Name        p value        Signature     Description
14976         NM_006187        OAS3             4.90E-05       IFN           "2'-5'-oligoadenylate
                                                                             synthetase 3,
                                                                             100kDa"
71793         XM_291055        PARP14;          4.90E-05       IFN           "synonym: KIAA1268;
                               KIAA1268                                      Homo sapiens poly
                                                                             (ADP-ribose)
                                                                             polymerase family,
                                                                             member 14
                                                                             (PARP14), mRNA."
28035         NM_017523        HSXIAPAF1        8.46E-05       IFN           XIAP associated
                                                                             factor-1
47607         NM_033255        EPSTI1           0.000184       IFN           Epithelial stromal
                                                                             interaction 1 (breast)
93924         NM_002462        MX1              0.000184       IFN           "Myxovirus (influenza
                                                                             virus) resistance 1,
                                                                             interferon-inducible
                                                                             protein p78 (mouse)"
116787        NM_002535        OAS2             0.000184       IFN           "2'-5'-oligoadenylate
                                                                             synthetase 2,
                                                                             69/71kDa"
15844         NM_006820        C1orf29          0.000286       IFN           Chromosome 1 open
                                                                             reading frame 29
118241        NM_001549        IFIT3            0.000286       IFN           Interferon-induced
                                                                             protein with
                                                                             tetratricopeptide
                                                                             repeats 3
91276         NM_001565        CXCL10           0.000315       IFN           Chemokine (C-X-C
                                                                             motif) ligand 10
56956         NM_144573        NEXN             0.000334       IFN           Nexilin (F actin
                                                                             binding protein)
105669        NM_007315        STAT1            0.000341       IFN           "Signal transducer
                                                                             and activator of
                                                                             transcription 1,
                                                                             91kDa"
59983         NM_152703        C7orf6           0.000346       IFN           Chromosome 7 open
                                                                             reading frame 6
87629         NM_001185        AZGP1            0.000346       IFN           "Alpha-2-glycoprotein
                                                                             1, zinc"
100978        AA353152         IFIT1            0.000346       IFN           Interferon-induced
                                                                             protein with
                                                                             tetratricopeptide
                                                                             repeats 1
36692         NM_020640        RP42             0.000429       IFN           RP42 homolog
30839         NM_016323        HERC5            0.00052        IFN           Hect domain and
                                                                             RLD 5
93772         NM_002346        LY6E             0.000601       IFN           "Lymphocyte antigen
                                                                             6 complex, locus E"
4511          NM_004223        UBE2L6           0.00071        IFN           Ubiquitin-conjugating
                                                                             enzyme E2L 6
94284         NM_001548        IFIT1; G10P1;    0.00071        IFN           "synonyms: G10P1,
                               IFI56; IFI-56;                                IFI56, IFI-56, IFNAI1,
                               IFNAI1;                                       RNM561, GARG-16;
                     RNM561;                      isoform 2 is encoded
                     GARG-16                      by transcript variant
                                                  2; Interferon, alpha-
                                                  inducible protein (MW
                                                  56kD); interferon-
                                                  induced protein 56;
                                                  go_component:
                                                  cytoplasm [goid
                                                  0005737] [evidence
                                                  NAS] [pmid
                                                  3753936];
                                                  go_function:
                                                  molecular_function
                                                  unknown [goid
                                                  0005554] [evidence
                                                  ND] [pmid 3753936];
                                                  go_process: immune
                                                  response [goid
                                                  0006955] [evidence
                                                  IEA]; Homo sapiens
                                                  interferon-induced
                                                  protein with
                                                  tetratricopeptide
                                                  repeats 1 (IFIT1),
                                                  transcript variant 2,
                                                  mRNA."
83596    XM_290768   C17orf27;   0.000722   IFN   "synonym: KIAA1554;
                     KIAA1554                     Homo sapiens
                                                  chromosome 17 open
                                                  reading frame 27
                                                  (C17orf27), mRNA."
79995    XM_059368               0.000782   IFN
95474    NM_002463   MX2         0.00101    IFN   Myxovirus (influenza
                                                  virus) resistance 2
                                                  (mouse)
95874    NM_002759   PRKR        0.00112    IFN   "Protein kinase,
                                                  interferon-inducible
                                                  double stranded RNA
                                                  dependent"
15307    NM_006417   IFI44       0.00128    IFN   Interferon-induced
                                                  protein 44
27967    NM_017414   USP18       0.00136    IFN   Ubiquitin specific
                                                  protease 18
8896     NM_005101   G1P2        0.00138    IFN   "Interferon, alpha-
                                                  inducible protein
                                                  (clone IFI-15K)"
12577    NM_005532   IFI27       0.00148    IFN   "Interferon, alpha-
                                                  inducible protein 27"
145970   AF026943    IFIT3       0.00156    IFN   Interferon-induced
                                                  protein with
                                                  tetratricopeptide
                                                  repeats 3
43072    NM_031458   BAL         0.00169    IFN   B aggressive
                                                  lymphoma gene
94971    NM_002053   GBP1        0.00196    IFN   "Guanylate binding
                                                     protein 1, interferon-
                                                     inducible, 67kDa"
107477   M97168      XIST; XCE;   0.00316    IFN     Homo sapiens X
                     XIC; SXI1;                      (inactive)-specific
                     swd66;                          transcript (XIST)
                     DXS1089;                        complete exon.
                     DXS399E
29530    NM_016817   OAS2         0.00404    IFN     "2'-5'-oligoadenylate
                                                     synthetase 2,
                                                     69/71kDa"
97074    NM_003641   IFITM1       0.00451    IFN     Interferon induced
                                                     transmembrane
                                                     protein 1 (9-27)
172026   NM_002534   OAS1         0.0049     IFN     "2',5'-oligoadenylate
                                                     synthetase 1,
                                                     40/46kDa"
185216   NM_182658   C20orf185    0.00573    IFN     Chromosome 20
                                                     open reading frame
                                                     185
96167    NM_002982   CCL2         0.00592    IFN     Chemokine (C-C
                                                     motif) ligand 2
31209    NM_016816   OAS1         0.0061     IFN     "2',5'-oligoadenylate
                                                     synthetase 1,
                                                     40/46kDa"
106219   NM_002038   G1P3         0.00702    IFN     "Interferon, alpha-
                                                     inducible protein
                                                     (clone IFI-6-16)"
23797    NM_015907   LAP3         0.00709    IFN     Leucine
                                                     aminopeptidase 3
47500    NM_033109   PNPT1        0.00893    IFN     Polyribonucleotide
                                                     nucleotidyltransferase
                                                     1
133876   NM_052932   PORIMIN      0.0096     IFN     Pro-oncosis receptor
                                                     inducing membrane
                                                     injury gene
110063   NM_004863   SPTLC2       0.0162     IFN     "Serine
                                                     palmitoyltransferase,
                                                     long chain base
                                                     subunit 2"
107379   AW582992    CLU          7.57E-05   Other   "Clusterin
                                                     (complement lysis
                                                     inhibitor, SP-40,40,
                                                     sulfated glycoprotein
                                                     2, testosterone-
                                                     repressed prostate
                                                     message 2,
                                                     apolipoprotein J)"
100911   AW583796    CLU          8.46E-05   Other   "Clusterin
                                                     (complement lysis
                                                     inhibitor, SP-40,40,
                                                     sulfated glycoprotein
                                                     2, testosterone-
                                                     repressed prostate
                                                     message 2,
                                                     apolipoprotein J)"
141980   NM_000566   FCGR1A    8.46E-05   Other   "Fc fragment of IgG,
                                                  high affinity Ia,
                                                  receptor for (CD64)"
94654    NM_001831   CLU       0.000468   Other   "Clusterin
                                                  (complement lysis
                                                  inhibitor, SP-40,40,
                                                  sulfated glycoprotein
                                                  2, testosterone-
                                                  repressed prostate
                                                  message 2,
                                                  apolipoprotein J)"
19010    NM_014147   HSPC047   0.00062    Other   HSPC047 protein
130957   NM_173077   CPO       0.00112    Other   Carboxypeptidase O
22043    NM_014059   RGC32     0.00451    Other   Response gene to
                                                  complement 32
172152   NM_000607   ORM1      0.00693    Other   Orosomucoid 1
31162    NM_016619   PLAC8     0.00702    Other   Placenta-specific 8
12822    NM_005738   ARL4A     0.00864    Other   ADP-ribosylation
                                                  factor-like 4A
97731    NM_002965   S100A9    0.015      Other   S100 calcium binding
                                                  protein A9
                                                  (calgranulin B)
167088   NM_005143   HP        0.0194     Other   Haptoglobin
142959   NM_004084   DEFA1     0.0229     Other   "Defensin, alpha 1,
                                                  myeloid-related
                                                  sequence"
18579    NM_013269   OCIL      0.0326     Other   Lectin-like NK cell
                                                  receptor
14321    NM_006865   LILRA3    0.0354     Other   "Leukocyte
                                                  immunoglobulin-like
                                                  receptor, subfamily A
                                                  (without TM domain),
                                                  member 3"
93546    NM_002166   ID2       0.0159     Other   "Inhibitor of DNA
                                                  binding 2, dominant
                                                  negative helix-loop-
                                                  helix protein"

				
DOCUMENT INFO
Shared By:
Categories:
Tags:
Stats:
views:7
posted:11/19/2011
language:English
pages:4