171595Finkemeier_Table_S1_S2_S3

Supplemental Table S1: Proteins identified in organellar fractions of (A) chloroplasts.



prot_acc spliceform plastid localisation (SUBA II)

At4g02770 1 plastid localisation experimentally observed (SUBA II)

AtCg00480 1 plastid localisation experimentally observed (SUBA II)

AtCg00470 1 plastid localisation experimentally observed (SUBA II)

AtCg00490 1 plastid localisation experimentally observed (SUBA II)

At5g38410 1 plastid localisation experimentally observed (SUBA II)

At2g34420 1 plastid localisation experimentally observed (SUBA II)

At1g29910 1 plastid localisation experimentally observed (SUBA II)

At1g67090 1 plastid localisation experimentally observed (SUBA II)

At5g38430 1 plastid localisation experimentally observed (SUBA II)

AtCg00120 1 plastid localisation experimentally observed (SUBA II)

At1g06680 2 plastid localisation experimentally observed (SUBA II)

At2g05070 1 plastid localisation experimentally observed (SUBA II)

At3g16140 1 plastid localisation experimentally observed (SUBA II)

At5g54270 1 plastid localisation experimentally observed (SUBA II)

At4g04640 1 plastid localisation experimentally observed (SUBA II)

At4g09650 1 plastid localisation experimentally observed (SUBA II)

At2g39730 2 plastid localisation experimentally observed (SUBA II)

At1g52230 1 plastid localisation experimentally observed (SUBA II)

At1g12900 1 plastid localisation experimentally observed (SUBA II)

At4g03280 1 plastid localisation experimentally observed (SUBA II)

At3g47070 1 plastid localisation experimentally observed (SUBA II)

At3g12780 1 plastid localisation experimentally observed (SUBA II)

At4g38970 1 plastid localisation experimentally observed (SUBA II)

At4g20360 1 plastid localisation experimentally observed (SUBA II)

AtCg00680 1 plastid localisation experimentally observed (SUBA II)

At2g28900 1 plastid localisation experimentally observed (SUBA II)

At4g05180 1 plastid localisation experimentally observed (SUBA II)

At1g61520 1 plastid localisation experimentally observed (SUBA II)

At1g42970 1 plastid localisation experimentally observed (SUBA II)

At1g20020 1 plastid localisation experimentally observed (SUBA II)

At3g47470 1 plastid localisation experimentally observed (SUBA II)

At2g46820 1 plastid localisation experimentally observed (SUBA II)

At5g64040 1 plastid localisation experimentally observed (SUBA II)

At4g02530 1 plastid localisation experimentally observed (SUBA II)

At4g21280 1 plastid localisation experimentally observed (SUBA II)

AtCg00510 1

At5g23120 1 plastid localisation experimentally observed (SUBA II)

At3g50820 1 plastid localisation experimentally observed (SUBA II)

At4g10340 1 plastid localisation experimentally observed (SUBA II)

AtCg01060 1 plastid localisation experimentally observed (SUBA II)

At3g01500 3 plastid localisation experimentally observed (SUBA II)

At2g20260 1 plastid localisation experimentally observed (SUBA II)

At3g60750 1 plastid localisation experimentally observed (SUBA II)

At5g35630 1 plastid localisation experimentally observed (SUBA II)

At2g21330 1 plastid localisation experimentally observed (SUBA II)

At5g66570 1 plastid localisation experimentally observed (SUBA II)

At4g09010 1 plastid localisation experimentally observed (SUBA II)

At1g03600 1 plastid localisation experimentally observed (SUBA II)

At3g54890 1 plastid localisation experimentally observed (SUBA II)

AtCg00270 1 plastid localisation experimentally observed (SUBA II)

At3g14420 1 plastid localisation experimentally observed (SUBA II)

At5g66190 1 plastid localisation experimentally observed (SUBA II)

At1g21500 1 plastid localisation experimentally observed (SUBA II)

At1g76450 1 plastid localisation experimentally observed (SUBA II)

At3g61470 1 plastid localisation experimentally observed (SUBA II)

At1g09340 1 plastid localisation experimentally observed (SUBA II)

AtCg00540 1 plastid localisation experimentally observed (SUBA II)

At3g11630 1 plastid localisation experimentally observed (SUBA II)

At2g42130 5 plastid localisation experimentally observed (SUBA II)

At4g28750 1 plastid localisation experimentally observed (SUBA II)

AtCg00750 1 plastid localisation experimentally observed (SUBA II)

At1g71500 1 plastid localisation experimentally observed (SUBA II)

At5g58250 1 plastid localisation experimentally observed (SUBA II)

AtCg00710 1 plastid localisation experimentally observed (SUBA II)

At2g20890 1 plastid localisation experimentally observed (SUBA II)

At1g55670 1 plastid localisation experimentally observed (SUBA II)

At3g53460 1 plastid localisation experimentally observed (SUBA II)

At5g20720 1 plastid localisation experimentally observed (SUBA II)

AtCg00730 1 plastid localisation experimentally observed (SUBA II)

At1g55490 1 plastid localisation experimentally observed (SUBA II)

At1g15820 1 plastid localisation experimentally observed (SUBA II)

At5g03880 1 plastid localisation experimentally observed (SUBA II)

At1g44575 1 plastid localisation experimentally observed (SUBA II)

At1g68590 1 plastid localisation experimentally observed (SUBA II)

At3g62030 1 plastid localisation experimentally observed (SUBA II)

At5g14910 1 plastid localisation experimentally observed (SUBA II)

AtCg00020 1 plastid localisation experimentally observed (SUBA II)

At3g14415 1 plastid localisation experimentally observed (SUBA II)

At2g28000 1 plastid localisation experimentally observed (SUBA II)

At2g37220 1 plastid localisation experimentally observed (SUBA II)

At3g27830 1 plastid localisation experimentally observed (SUBA II)

At2g05990 1 plastid localisation experimentally observed (SUBA II)

At5g01530 1 plastid localisation experimentally observed (SUBA II)

At2g46910 1 plastid localisation experimentally observed (SUBA II)

At3g55800 1 plastid localisation experimentally observed (SUBA II)

At3g63140 1 plastid localisation experimentally observed (SUBA II)

At4g22240 1 plastid localisation experimentally observed (SUBA II)

At4g12800 1 plastid localisation experimentally observed (SUBA II)

At5g17870 1 plastid localisation experimentally observed (SUBA II)

At1g07660 1 plastid localisation experimentally observed (SUBA II)

At2g27710 1 plastid localisation experimentally observed (SUBA II)

At4g24770 1 plastid localisation experimentally observed (SUBA II)

At5g58260 1 plastid localisation experimentally observed (SUBA II)

At2g44920 2 plastid localisation experimentally observed (SUBA II)

At1g31330 1 plastid localisation experimentally observed (SUBA II)

At3g45140 1 plastid localisation experimentally observed (SUBA II)

At5g13510 1 plastid localisation experimentally observed (SUBA II)

AtCg00650 1 plastid localisation experimentally observed (SUBA II)

At2g27730 1

AtCg00280 1 plastid localisation experimentally observed (SUBA II)

At4g34620 1 plastid localisation experimentally observed (SUBA II)

At5g36700 1 plastid localisation experimentally observed (SUBA II)

At1g30380 1 plastid localisation experimentally observed (SUBA II)

At2g26500 1 plastid localisation experimentally observed (SUBA II)

At2g35490 1 plastid localisation experimentally observed (SUBA II)

At2g43750 1 plastid localisation experimentally observed (SUBA II)

At2g47400 1 plastid localisation experimentally observed (SUBA II)

At3g56650 1 plastid localisation experimentally observed (SUBA II)

At4g21210 1 plastid localisation experimentally observed (SUBA II)

At5g42650 1 plastid localisation experimentally observed (SUBA II)

AtCg00660 1 plastid localisation experimentally observed (SUBA II)

At1g32060 1 plastid localisation experimentally observed (SUBA II)

At1g79040 1 plastid localisation experimentally observed (SUBA II)

At3g54050 1 plastid localisation experimentally observed (SUBA II)

AtCg00830 1 plastid localisation experimentally observed (SUBA II)

At1g07320 1 plastid localisation experimentally observed (SUBA II)

At1g08380 1 plastid localisation experimentally observed (SUBA II)

At1g51110 1 plastid localisation experimentally observed (SUBA II)

At1g54780 1 plastid localisation experimentally observed (SUBA II)

At3g23400 1 plastid localisation experimentally observed (SUBA II)

At5g64816 1 plastid localisation experimentally observed (SUBA II)

At4g31560 1

At3g58610 1 plastid localisation experimentally observed (SUBA II)

At4g24750 1 plastid localisation experimentally observed (SUBA II)

At5g45390 1 plastid localisation experimentally observed (SUBA II)

At5g58330 1 plastid localisation experimentally observed (SUBA II)

At5g09650 1 plastid localisation experimentally observed (SUBA II)

At1g80380 2 plastid localisation experimentally observed (SUBA II)

At1g20340 1 plastid localisation experimentally observed (SUBA II)

At2g37660 1 plastid localisation experimentally observed (SUBA II)

At4g39260 1 plastid localisation experimentally observed (SUBA II)

At1g63940 2 plastid localisation experimentally observed (SUBA II)

At2g30950 1 plastid localisation experimentally observed (SUBA II)

At3g52380 1 plastid localisation experimentally observed (SUBA II)

At4g01150 1 plastid localisation experimentally observed (SUBA II)

At5g08740 1 plastid localisation experimentally observed (SUBA II)

At5g09660 1 plastid localisation experimentally observed (SUBA II)

At5g42070 1 plastid localisation experimentally observed (SUBA II)

AtCg00420 1 plastid localisation experimentally observed (SUBA II)

At1g73060 1 plastid localisation experimentally observed (SUBA II)

At5g04140 1 plastid localisation experimentally observed (SUBA II)

At5g08540 1 plastid localisation experimentally observed (SUBA II)

At1g23740 1 plastid localisation experimentally observed (SUBA II)

At1g75330 1 plastid localisation experimentally observed (SUBA II)

At3g20390 1 plastid localisation experimentally observed (SUBA II)

AtCg00340 1 plastid localisation experimentally observed (SUBA II)

At1g68010 1 plastid localisation experimentally observed (SUBA II)

At2g04039 1 plastid localisation experimentally observed (SUBA II)

At2g13360 1 plastid localisation experimentally observed (SUBA II)

At2g40490 1 plastid localisation experimentally observed (SUBA II)

At3g15360 1 plastid localisation experimentally observed (SUBA II)

At3g27890 1 plastid localisation experimentally observed (SUBA II)

At3g47520 1 plastid localisation experimentally observed (SUBA II)

At5g33320 1 plastid localisation experimentally observed (SUBA II)

At5g35170 1 plastid localisation experimentally observed (SUBA II)

AtCg00130 1 plastid localisation experimentally observed (SUBA II)

At1g69740 1 plastid localisation experimentally observed (SUBA II)

At1g74970 1 plastid localisation experimentally observed (SUBA II)

At3g44890 1 plastid localisation experimentally observed (SUBA II)

At5g46110 1 plastid localisation experimentally observed (SUBA II)

At3g15840 4 plastid localisation experimentally observed (SUBA II)

At2g43560 1 plastid localisation experimentally observed (SUBA II)

At4g01050 1 plastid localisation experimentally observed (SUBA II)

At4g25100 1 plastid localisation experimentally observed (SUBA II)

At4g39710 1 plastid localisation experimentally observed (SUBA II)

At5g07020 1 plastid localisation experimentally observed (SUBA II)

AtCg00720 1 plastid localisation experimentally observed (SUBA II)

At1g74470 1 plastid localisation experimentally observed (SUBA II)

At2g42220 1 plastid localisation experimentally observed (SUBA II)

At2g43180 1 plastid localisation experimentally observed (SUBA II)

At3g15520 1 plastid localisation experimentally observed (SUBA II)

At3g55330 1 plastid localisation experimentally observed (SUBA II)

At4g24930 1 plastid localisation experimentally observed (SUBA II)

At5g42765 1 plastid localisation experimentally observed (SUBA II)

At5g50920 1 plastid localisation experimentally observed (SUBA II)

At5g52970 1 plastid localisation experimentally observed (SUBA II)

At5g62720 1 plastid localisation experimentally observed (SUBA II)

At5g63570 1 plastid localisation experimentally observed (SUBA II)

AtCg00800 1 plastid localisation experimentally observed (SUBA II)

At5g35100 2 plastid localisation experimentally observed (SUBA II)

At1g14030 1 plastid localisation experimentally observed (SUBA II)

At1g27450 1 plastid localisation experimentally observed (SUBA II)

At1g44920 1 plastid localisation experimentally observed (SUBA II)

At1g45474 1 plastid localisation experimentally observed (SUBA II)

At2g39470 1 plastid localisation experimentally observed (SUBA II)

At2g46100 1 plastid localisation experimentally observed (SUBA II)

At3g12930 1 plastid localisation experimentally observed (SUBA II)

At3g26070 1 plastid localisation experimentally observed (SUBA II)

At3g46780 1 plastid localisation experimentally observed (SUBA II)

At4g29670 1 plastid localisation experimentally observed (SUBA II)

At5g15530 1 plastid localisation experimentally observed (SUBA II)

AtCg00150 1 plastid localisation experimentally observed (SUBA II)

AtCg00350 1 plastid localisation experimentally observed (SUBA II)

At1g64680 1 plastid localisation experimentally observed (SUBA II)

At1g77090 1 plastid localisation experimentally observed (SUBA II)

At2g43030 1 plastid localisation experimentally observed (SUBA II)

At3g04790 1 plastid localisation experimentally observed (SUBA II)

At4g01310 1 plastid localisation experimentally observed (SUBA II)

At4g23100 1 plastid localisation experimentally observed (SUBA II)

At5g08670 1 plastid localisation experimentally observed (SUBA II)

At5g25980 2 plastid localisation experimentally observed (SUBA II)

At1g01080 1 plastid localisation experimentally observed (SUBA II)

At1g02560 1 plastid localisation experimentally observed (SUBA II)

At1g12410 1 plastid localisation experimentally observed (SUBA II)

At1g16880 1 plastid localisation experimentally observed (SUBA II)

At1g32220 1 plastid localisation experimentally observed (SUBA II)

At2g15620 1 plastid localisation experimentally observed (SUBA II)

At2g34460 1 plastid localisation experimentally observed (SUBA II)

At3g22960 1 plastid localisation experimentally observed (SUBA II)

At5g23310 1 plastid localisation experimentally observed (SUBA II)

At5g62610 1

At4g20330 1

At1g16080 1 plastid localisation experimentally observed (SUBA II)

At1g24360 1 plastid localisation experimentally observed (SUBA II)

At1g32900 1 plastid localisation experimentally observed (SUBA II)

At3g03890 1 plastid localisation experimentally observed (SUBA II)

At3g04940 1 plastid localisation experimentally observed (SUBA II)

At3g58010 1 plastid localisation experimentally observed (SUBA II)

At4g04020 1 plastid localisation experimentally observed (SUBA II)

At4g18370 1 plastid localisation experimentally observed (SUBA II)

At4g25080 1 plastid localisation experimentally observed (SUBA II)

At4g31530 1 plastid localisation experimentally observed (SUBA II)

At5g51100 1 plastid localisation experimentally observed (SUBA II)

At5g66530 1 plastid localisation experimentally observed (SUBA II)

At2g43950 2 plastid localisation experimentally observed (SUBA II)

At1g55480 1 plastid localisation experimentally observed (SUBA II)

At2g36460 1 plastid localisation experimentally observed (SUBA II)

At3g61080 1 plastid localisation experimentally observed (SUBA II)

At5g27560 1 plastid localisation experimentally observed (SUBA II)

At5g54770 1 plastid localisation experimentally observed (SUBA II)

At1g52510 1 plastid localisation experimentally observed (SUBA II)

At1g74640 1 plastid localisation experimentally observed (SUBA II)

At2g27680 1 plastid localisation experimentally observed (SUBA II)

At2g45440 1 plastid localisation experimentally observed (SUBA II)

At3g60880 1 plastid localisation experimentally observed (SUBA II)

At4g36810 1 plastid localisation experimentally observed (SUBA II)

At5g08280 1 plastid localisation experimentally observed (SUBA II)

At5g17920 1 plastid localisation experimentally observed (SUBA II)

At5g23060 1 plastid localisation experimentally observed (SUBA II)

At2g29050 1

At1g01090 1 plastid localisation experimentally observed (SUBA II)

At1g04420 1 plastid localisation experimentally observed (SUBA II)

At1g32160 1 plastid localisation experimentally observed (SUBA II)

At1g48420 1 plastid localisation experimentally observed (SUBA II)

At1g50450 1 plastid localisation experimentally observed (SUBA II)

At2g04030 1 plastid localisation experimentally observed (SUBA II)

At2g22360 1 plastid localisation experimentally observed (SUBA II)

At2g43710 1 plastid localisation experimentally observed (SUBA II)

At3g01480 1 plastid localisation experimentally observed (SUBA II)

At3g16470 1 plastid localisation experimentally observed (SUBA II)

At4g18480 1 plastid localisation experimentally observed (SUBA II)

At4g35250 1 plastid localisation experimentally observed (SUBA II)

At5g28500 1 plastid localisation experimentally observed (SUBA II)

At5g30510 1 plastid localisation experimentally observed (SUBA II)

At5g39830 1 plastid localisation experimentally observed (SUBA II)

At4g02930 1

At1g57720 1

At1g54080 1

At1g15980 1 plastid localisation experimentally observed (SUBA II)

At1g20260 1 plastid localisation experimentally observed (SUBA II)

At1g20620 1 plastid localisation experimentally observed (SUBA II)

At1g20630 1 plastid localisation experimentally observed (SUBA II)

At1g80030 1 plastid localisation experimentally observed (SUBA II)

At2g31810 1 plastid localisation experimentally observed (SUBA II)

At2g44640 1 plastid localisation experimentally observed (SUBA II)

At3g04550 1 plastid localisation experimentally observed (SUBA II)

At3g22890 1 plastid localisation experimentally observed (SUBA II)

At3g29320 1 plastid localisation experimentally observed (SUBA II)

At3g52750 1 plastid localisation experimentally observed (SUBA II)

At4g13430 1 plastid localisation experimentally observed (SUBA II)

At4g33680 1 plastid localisation experimentally observed (SUBA II)

At5g41670 1 plastid localisation experimentally observed (SUBA II)

At5g46290 1 plastid localisation experimentally observed (SUBA II)

At5g48300 1 plastid localisation experimentally observed (SUBA II)

At5g16290 1

At1g70580 1

At1g31640 1

At1g02150 1 plastid localisation experimentally observed (SUBA II)

At1g06820 1 plastid localisation experimentally observed (SUBA II)

At1g52400 1 plastid localisation experimentally observed (SUBA II)

At2g35040 1 plastid localisation experimentally observed (SUBA II)

At2g47940 1 plastid localisation experimentally observed (SUBA II)

At3g23940 1 plastid localisation experimentally observed (SUBA II)

At4g00490 1 plastid localisation experimentally observed (SUBA II)

At4g01690 1 plastid localisation experimentally observed (SUBA II)

At4g18440 1 plastid localisation experimentally observed (SUBA II)

At4g19170 1 plastid localisation experimentally observed (SUBA II)

At5g17530 1 plastid localisation experimentally observed (SUBA II)

At5g35360 1 plastid localisation experimentally observed (SUBA II)

At5g62530 1 plastid localisation experimentally observed (SUBA II)

At5g64300 1 plastid localisation experimentally observed (SUBA II)

At1g48790 1

At5g67030 2 plastid localisation experimentally observed (SUBA II)

At3g18890 1 plastid localisation experimentally observed (SUBA II)

At4g16155 1 plastid localisation experimentally observed (SUBA II)

At5g42270 1 plastid localisation experimentally observed (SUBA II)

At1g12800 1 plastid localisation experimentally observed (SUBA II)

At1g31230 1 plastid localisation experimentally observed (SUBA II)

At1g62750 1 plastid localisation experimentally observed (SUBA II)

At3g10690 1 plastid localisation experimentally observed (SUBA II)

AtCg01010 1 plastid localisation experimentally observed (SUBA II)

At5g11430 1

At4g33010 2 plastid localisation experimentally observed (SUBA II)

At5g04360 1 plastid localisation experimentally observed (SUBA II)

At5g42390 1 plastid localisation experimentally observed (SUBA II)

At4g02510 1 plastid localisation experimentally observed (SUBA II)

At5g53460 1 plastid localisation experimentally observed (SUBA II)

At5g43900 1

At1g67120 1 plastid localisation experimentally observed (SUBA II)

ctions of (A) chloroplasts.



prot_desc prot_score prot_mass prot_matches emPAI

prot_matches_sig

687 22641

| Symbols: PSAD-1 | PSAD-1 (photosystem I subunit D-1) | chr4:1229247-1229873 REVERSE 42 10 29.93

2188 53957 107 51

| Symbols: ATPB | chloroplast-encoded gene for beta subunit of ATP synthase | chrC:52660-54156 REVERSE 22.12

812

| Symbols: ATPE | ATPase epsilon subunit | chrC:52265-52663 REVERSE 14547 36 17 16.45

1040 53435 75 26 11.16

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in

394 20556 30 8 10.02

| Symbols: | ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) | chr5:1537750

| chr2:14522716-14523513 REVERSE20

| Symbols: LHB1B2, LHCB1.5 | LHB1B2; chlorophyll binding 1002 28093 51 8.77

1057 28266 51 21 8.6

| Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding | chr1:10472443-104

322 20488 1A); ion 6.82

| Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN26 copper 6 binding / ribulose-bisph

351 20558 25 6 6.82

| Symbols: | ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) | chr5:1538435

1396 55351 56 26 6.53

| Symbols: ATPA | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which ca

303 23801 16 6 4.15

| Symbols: PSBP-1, OEE2, PSII-P | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding | chr1:2048076-2049186 FORWAR

613 28659 28

| Symbols: LHCB2.2, LHCB2 | LHCB2.2; chlorophyll binding | chr2:1799436-1800329 REVERSE 9 4.03

283 15207

| Symbols: PSAH-1 | PSAH-1 (photosystem I subunit H-1) | chr3:5468670-5469415 REVERSE 15 7 3.95

632 28745 24

| Symbols: LHCB3, LHCB3*1 | LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3);11 3.42

structural molecule | chr5:2

289 41171

| Symbols: ATPC1 | ATPC1; enzyme regulator | chr4:2350761-2351882 REVERSE 23 8 2.7

345 25653 11 6

| Symbols: ATPD | ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE); hydrogen ion transporting ATP synthase,2.47 rotational mechan

733 49354 30 14 2.45

| Symbols: RCA | RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carbox

178 15264 13 3

| Symbols: PSAH2, PSAH-2, PSI-H | PSAH2 (PHOTOSYSTEM I SUBUNIT H2) | chr1:19454902-19455508 FORWARD 2.11

433 43105 24 NAD

| Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2);11 or NADH binding / bind1.96

| Symbols: PETC, PGR1 | PETC (PHOTOSYNTHETIC ELECTRON149 24635 8 2 1.74

TRANSFER C); electron transporter, transferring electrons from c

85

| Symbols: | unknown protein | chr3:17337205-17337507 REVERSE 10523 4 2 1.63

363 50195

| Symbols: PGK1 | PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase |22 9 1.54

chr3:4061127-4063140 REVERSE

266 43132

| Symbols: | fructose-bisphosphate aldolase, putative | chr4:18163714-18165659 REVERSE17 6 1.5

490 51883 E1B); 10 1.47

| Symbols: ATRAB8D, ATRABE1B | ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG 20 GTP binding / GTPase/ translation

427 56172

| Symbols: PSBB | encodes for CP47, subunit of the photosystem II reaction center. |19 6 1.46

chrC:72371-73897 FORWARD

200 15529 6 3 1.45

| Symbols: OEP16, ATOEP16-L, ATOEP16-1 | ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1); P-P-bond-hydrolysis-driv

110 24628 9

| Symbols: PSBQ, PSBQ-2, PSII-Q | PSBQ-2; calcium ion binding | chr4:2672093-2673170 REVERSE3 1.37

226 29163

| Symbols: LHCA3 | LHCA3; chlorophyll binding | chr1:22700152-22701149 FORWARD 10 4 1.35

321 48086 19 6 1.28

| Symbols: GAPB | GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehy

198 41484 25 4 1.18

| Symbols: ATLFNR2, FNR2 | FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ po

314 27773 11 7 1.16

| Symbols: LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding

293 18585 7 7 1.13

| Symbols: PTAC8, TMP14, PSAP, PSI-P | PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding | chr2:19243729-19244870 FORWA

65 18702

| Symbols: PSAN | PSAN; calmodulin binding | chr5:25628724-25629409 REVERSE 7 2 1.12

194 23705

| Symbols: | chloroplast thylakoid lumen protein | chr4:1112335-1114005 REVERSE 9 5 1.11

175

| Symbols: PSBQ, PSBQA, PSBQ-1 | oxygen-evolving enhancer protein23781 putative (PSBQ1) (PSBQ) | chr4:1133444

3, chloroplast, 12 3 1.11

35 4131

| Symbols: PSAI | Encodes subunit I of photosystem I. | chrC:59247-59360 FORWARD 1 0 1.1

214 44133

| Symbols: HCF136 | HCF136; protein binding | chr5:7778154-7780463 FORWARD 13 6 1.08

335 35226

| Symbols: PSBO2, PSBO-2, OEC33 | PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen 21 6 1.04

evolving/ poly(U) binding | chr3:188910

| Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF103 30195 8 2 1.03

PHOTOSYSTEM II 5); chlorophyll binding | chr4:6408200-640949

| 9545 2

| Symbols: PSAC | Encodes the PsaC subunit of photosystem I.66 chrC:117318-117563 REVERSE 1 1.03

| Symbols: CA1 | CA1 (CARBONIC ANHYDRASE 1); carbonate 395 36521 13 8 0.99

dehydratase/ zinc ion binding | chr3:195173-197873 REVERSE

227 15180 7

| Symbols: PSAE-2 | PSAE-2 (photosystem I subunit E-2); catalytic | chr2:8736780-8737644 FORWARD 3 0.98

412

| Symbols: | transketolase, putative | chr3:22454004-22456824 FORWARD 80374 22 11 0.97

539 47780 21 12 0.97

| Symbols: GS2, GLN2, ATGSL1 | GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammonia ligase | chr5:13831220-13833239 FO

129 43075

| Symbols: | fructose-bisphosphate aldolase, putative | chr2:9128416-9130152 REVERSE 15 4 0.95

159

| Symbols: PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 | PSBO1 (PS II 35349 20 3 0.84

OXYGEN-EVOLVING COMPLEX 1); oxygen evolving/ poly

187

| Symbols: APX4 | APX4 (ASCORBATE PEROXIDASE 4); heme binding / 38082 8 3 0.76

peroxidase | chr4:5777502-5779338 REVERSE

150

| Symbols: | photosystem II family protein | chr1:898916-899440 FORWARD 18823 4 3 0.75

146 26150

| Symbols: LHCA1 | LHCA1; chlorophyll binding | chr3:20339706-20340922 REVERSE 7 4 0.72

| Symbols: PSBD | PSII D2 protein | chrC:32711-33772 FORWARD 157 39750 7 4 0.72

209 40373 10 4 0.7

| Symbols: | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid

182 40643 14 4

| Symbols: ATLFNR1, FNR1 | FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporte 0.7

| Symbols: | unknown protein | chr1:7530047-7530954 REVERSE 51 13250 2 1 0.69

44 27530

| Symbols: | oxygen-evolving complex-related | chr1:28684618-28686109 FORWARD 5 0 0.68

214 27851

| Symbols: LHCA2 | LHCA2; chlorophyll binding | chr3:22745736-22747032 FORWARD 10 6 0.67

189

| Symbols: CRB, CSP41B | CRB (CHLOROPLAST RNA BINDING); binding42764 11 4 0.66

/ catalytic/ coenzyme binding | chr1:3015473-3018035

175 35449 11 2

| Symbols: PETA | Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; 0.66 encoded by the ch

185 29188

| Symbols: | 2-cys peroxiredoxin, chloroplast (BAS1) | chr3:3672189-3673937 FORWARD 7 4 0.63

238

| Symbols: | unknown protein | chr2:17566862-17567916 FORWARD22770 5 4 0.59

144 14958

| Symbols: PSAE-1 | PSAE-1 (PSA E1 KNOCKOUT); catalytic | chr4:14202951-142038888 REVERSE 2 0.59

59 15128

| Symbols: RPS11 | 30S chloroplast ribosomal protein S11 | chrC:78960-79376 REVERSE 4 1 0.58

91 31879

| Symbols: | Rieske (2Fe-2S) domain-containing protein | chr1:26936084-26937331 FORWARD 2 4 0.57

76

| Symbols: | unknown protein | chr5:23559558-23560372 FORWARD24146 3 1 0.55

30 of the 1 0 0.54

| Symbols: PSBH | Encodes a 8 kD phosphoprotein that is a component7697 photosystem II oxygen evolving core. Its exact

126

| Symbols: PSB29, THF1 | PSB29 | chr2:8987783-8989185 FORWARD 34003 4 3 0.52

53 17075

| Symbols: PSAG | PSAG (PHOTOSYSTEM I SUBUNIT G) | chr1:20802874-20803356 REVERSE 3 0 0.5

75 36099

| Symbols: CP29 | CP29; RNA binding / poly(U) binding | chr3:19819738-19821423 REVERSE 6 2 0.49

42 26785 3 0 0.49

| Symbols: CPN20, CPN10, CHCPN10, ATCPN21, CPN21 | CPN20 (CHAPERONIN 20); calmodulin binding | chr5:7015015-70163

61 17476 2 1 0.49

| Symbols: PETD | A chloroplast gene encoding subunit IV of the cytochrome b6/f complex | chrC:76481-77672 FORWARD

ATP 64169 14 2 0.48

| Symbols: CPN60B, LEN1 | CPN60B (CHAPERONIN 60 BETA);132 binding / protein binding | chr1:20715717-20718673 REVER

148 27505 5 3 0.47

| Symbols: LHCB6, CP24 | LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6); chlorophyll binding | chr1:5446685-544767

| Symbols: | electron carrier | chr5:1038674-1041453 REVERSE 129 37301 5 1 0.47

| Symbols: NPQ4, PSBS | NPQ4 (NONPHOTOCHEMICAL QUENCHING);27990 279 7 5 0.46

chlorophyll binding / xanthophyll binding | chr1:16871

122 18518 4 2 0.46

| Symbols: | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative | chr1:25757593-25758169 REVERSE

60 28532 4 1 0.45

| Symbols: ROC4 | peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (RO

46 19059 2

| Symbols: | heavy-metal-associated domain-containing protein | chr5:4823815-4825196 FORWARD 0 0.44

part 39025 6 3 0.44

| Symbols: PSBA | Encodes chlorophyll binding protein D1, a 128 of the photosystem II reaction center core | chrC:383-1444

152 40338 8 3 0.43

| Symbols: | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid

208 62205 10 3 0.42

| Symbols: CPN60A, CH-CPN60A, SLP | CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding | chr2:11926603-119

| Symbols: | 29 kDa ribonucleoprotein, chloroplast, putative287 30699 6 3 0.42

/ RNA-binding protein cp29, putative | chr2:15634980-1563633

75 20063 2 1 0.42

| Symbols: RPL12-A, RPL12 | RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome | chr3:10318576-103

113 41416 5 1 0.41

| Symbols: MOD1, ENR1 | MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ enoyl-[acyl-carrier-prote

| Symbols: | chlorophyll A-B binding protein CP29 (LHCB4) | 111 31177

chr5:209084-210243 FORWARD 7 2 0.41

160 31789 4 3

| Symbols: | plastid-lipid associated protein PAP / fibrillin family protein | chr2:19272427-19273856 FORWARD 0.4

134 42787 7 2 0.4

| Symbols: SBPASE | SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase/ sedoheptulose-bisphosphatase |

89 44074 5 2 0.39

| Symbols: CSP41A | CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding | ch

156 33692

| Symbols: | plastid-lipid associated protein PAP, putative | chr4:11766090-117672274REVERSE 3 0.37

137 23094

| Symbols: PSAL | PSAL (photosystem I subunit L) | chr4:7521469-7522493 FORWARD 3 2 0.36

| Symbols: PSRP6 | PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL45 11087 1 0

PROTEIN 6) | chr5:5907817-5908137 FORWARD 0.36

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD 45 11402 4 0 0.35

92 11437

| Symbols: | 60S acidic ribosomal protein P2 (RPP2B) | chr2:11816929-11817670 FORWARD 1 1 0.35

124 35766 5 2 0.35

| Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | chr4:

51 23668 3 0 0.35

| Symbols: | Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thyla

| Symbols: | thylakoid lumenal 15 kDa protein, chloroplast |127 24106 2

chr2:18524419-18526502 FORWARD 2 0.34

129 24329

| Symbols: PSAF | PSAF (photosystem I subunit F) | chr1:11215011-11215939 REVERSE 6 2 0.34

142

| Symbols: LOX2, ATLOX2 | LOX2 (LIPOXYGENASE 2); lipoxygenase | 102552 13 2

chr3:16525437-16529233 FORWARD 0.33

115 24891

| Symbols: | ribosomal protein L10 family protein | chr5:4341294-4341956 FORWARD 3 1 0.33

40 12053

| Symbols: RPS18 | chloroplast-encoded ribosomal protein S18 | chrC:67917-68222 FORWARD 0 1 0.33

102

| Symbols: | unknown protein | chr2:11820056-11820867 REVERSE 11940 2 1 0.33

of 52063 8 5 0.32

| Symbols: PSBC | chloroplast gene encoding a CP43 subunit 228the photosystem II reaction center. promoter contains a blue

82

| Symbols: SSR16 | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16);12748 2 2 0.31

structural constituent of ribosome | chr4:16535084-16

| Symbols: ATPGLP1, PGLP1 | PGLP1 (2-PHOSPHOGLYCOLATE 88 40192 3 2 0.31

PHOSPHATASE 1); phosphoglycolate phosphatase | chr5:14421

55 13312

| Symbols: PSAK | PSAK (photosystem I subunit K) | chr1:10722325-10723013 FORWARD 1 1 0.3

48 13151 1

| Symbols: | cytochrome b6f complex subunit (petM), putative | chr2:11270370-11270747 FORWARD 1 0.3

126 40538

| Symbols: | plastid-lipid associated protein PAP, putative | chr2:14912309-149137973REVERSE 2 0.3

60 41915 4 0 0.29

| Symbols: OASB, ACS1, CPACS1, ATCS-B | OASB (O-ACETYLSERINE (THIOL) LYASE B); cysteine synthase | chr2:18129604-1813

| Symbols: CP12-1, CP12 | CP12-1 | chr2:19446889-1944726373 13707

FORWARD 1 1 0.29

69 28726

| Symbols: | thylakoid lumenal 20 kDa protein | chr3:20984807-20985913 FORWARD2 1 0.28

84 43827 4

| Symbols: ATRP1 | ATRP1 (PPDK REGULATORY PROTEIN); phosphoprotein phosphatase/ protein kinase | 0.28 2 chr4:11307002-113

166 58331 7 3 0.28

| Symbols: AOS, CYP74A, DDE2 | AOS (ALLENE OXIDE SYNTHASE); allene oxide synthase/ hydro-lyase/ oxygen binding | chr5:1

70 14211 2 1 0.28

| Symbols: RPL20 | encodes a chloroplast ribosomal protein L20, a constituent of the large subunit of the ribosomal complex

103 44721 6 1 0.27

| Symbols: PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding | chr1:11532668-11534

86 14577

| Symbols: PSBR | PSBR (photosystem II subunit R) | chr1:29736085-29736781 FORWARD 3 2 0.27

62 45590 5 1 0.27

| Symbols: | fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, pu

52 30131 2 0.27

| Symbols: RPL2.1 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit1of the ribosomal complex |

38 30540 3 0

| Symbols: RPL4 | RPL4; poly(U) binding / structural constituent of ribosome | chr1:2249190-2250189 FORWARD 0.26

184 15248

| Symbols: PSAO | PSAO (photosystem I subunit O) | chr1:2641004-2641739 REVERSE 3 3 0.26

50 46079 7 0

| Symbols: | plastid-lipid associated protein PAP / fibrillin family protein | chr1:18935380-18937484 FORWARD0.26

55 31120

| Symbols: | thylakoid lumen 18.3 kDa protein | chr1:20439533-20440953 FORWARD2 1 0.26

59 30493 2

| Symbols: | plastid-lipid associated protein PAP / fibrillin family protein | chr3:8376636-83782251REVERSE 0.26

25

| Symbols: | unknown protein | chr5:25913487-25913879 FORWARD15002 1 0 0.26

| Symbols: HCF153 | HCF153 | chr4:15295219-15296028 FORWARD 1474931 1 0 0.26

123

| Symbols: | ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD64172 8 3 0.25

197 32208 4 4 0.25

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chlorop

167 31535 3 3 0.25

| Symbols: CLPP4, NCLPP4 | CLPP4 (CLP PROTEASE P4); serine-type endopeptidase | chr5:18396351-18397586 FORWARD

136 48799 4

| Symbols: | malate dehydrogenase (NADP), chloroplast, putative | chr5:23580010-23582287 REVERSE 0.25 2

55

| Symbols: AtPPa6 | AtPPa6 (Arabidopsis thaliana pyrophosphorylase 33644 2 0 0.24

6); inorganic diphosphatase/ pyrophosphatase | chr5:2

81 51499

| Symbols: | phosphoribulokinase/uridine kinase-related | chr1:30217332-30219784 FORWARD 15 0.23

54 17031 1

| Symbols: DRT112, PETE2 | DRT112; copper ion binding / electron carrier | chr1:7042770-7043273 REVERSE1 0.23

91 34972

| Symbols: | binding / catalytic/ coenzyme binding | chr2:15795481-15796977 REVERSE 2 2 0.23

27 16626 1 0 0.23

| Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding | chr4:1827416

67 53554 3

| Symbols: MDAR6 | monodehydroascorbate reductase, putative | chr1:23730095-23733534 FORWARD 0.22 1

162 74282 6 3 0.22

| Symbols: VAR2, FTSH2 | VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding | ch

97 35893

| Symbols: CP33, PDE322 | CP33; RNA binding | chr3:19421619-19422855 FORWARD 3 1 0.22

| Symbols: | unknown protein | chr4:493692-494668 FORWARD 29 17743 1 0 0.22

| Symbols: NDC1 | NDC1 (NAD(P)H dehydrogenase C1); NADH66 57154 3 1 0.21

dehydrogenase | chr5:2848752-2851323 REVERSE

107 37688 2 0.21

| Symbols: PMDH2 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase2| chr5:2993645-2995551 R

52

| Symbols: | unknown protein | chr5:16819118-16820119 REVERSE 17956 1 1 0.21

45 18660 2 0 0.21

| Symbols: NDHJ | Encodes NADH dehydrogenase subunit J. Its transcription is increased upon sulfur depletion. | chrC:48677

120

| Symbols: | unknown protein | chr1:27479027-27481258 FORWARD40232 6 3 0.2

213 178066 11

| Symbols: GLU1, GLS1, GLUS, FD-GOGAT | GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase 5 0.2

(ferredoxin) | chr5:113003

71

| Symbols: | unknown protein | chr5:2763914-2765431 FORWARD 38745 2 1 0.2

74 41132 3 1

| Symbols: | oxidoreductase, zinc-binding dehydrogenase family protein | chr1:8398245-8399656 REVERSE 0.19

69 41261 3 1 0.19

| Symbols: OTC | OTC (ORNITHINE CARBAMOYLTRANSFERASE); amino acid binding / carboxyl- or carbamoyltransferase/ ornit

112 19917

| Symbols: | endoribonuclease L-PSP family protein | chr3:7110227-7111695 REVERSE 2 2 0.19

and 82537 7 3 0.19

| Symbols: PSAB | Encodes the D1 subunit of photosystem I 210 II reaction centers. | chrC:37375-39579 REVERSE

44 42449 2 0

| Symbols: HPR | HPR; glycerate dehydrogenase/ poly(U) binding | chr1:25493418-25495720 FORWARD 0.18

136

| Symbols: | unknown protein | chr2:1333464-1334438 FORWARD 21460 2 2 0.18

71 44465 2 1 0.18

| Symbols: AGT, AGT1 | AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxyla

63 43724 4

| Symbols: HEME2 | HEME2; uroporphyrinogen decarboxylase | chr2:16912961-16914988 FORWARD 1 0.18

74 21330

| Symbols: ATHM4, TRX-M4, ATM4 | TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4);1 1 chr3:5188448-518

enzyme activator | 0.18

| Symbols: NQR | NQR (NADPH:QUINONE OXIDOREDUCTASE);46 21543 1 0

FMN reductase | chr3:10350807-103519380.18 REVERSE

81 42607 2 1 0.18

| Symbols: MDH | MDH (MALATE DEHYDROGENASE); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ o

112 44310 4 2 0.18

| Symbols: CUE1, PPT, ARAPPT | CUE1 (CAB UNDEREXPRESSED 1); antiporter/ triose-phosphate transmembrane transporter |

50 66039

| Symbols: | adenylate kinase family protein | chr5:13419278-13423482 FORWARD 4 0 0.18

60

| Symbols: ATPF | ATPase F subunit. | chrC:11529-12798 REVERSE 21101 4 1 0.18

39 47117 3 0 0.17

| Symbols: HEMB1 | HEMB1; catalytic/ metal ion binding / porphobilinogen synthase | chr1:26232197-26234713 FORWARD

78 22620 2 1 0.17

| Symbols: RPS9, TWN3 | RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome | chr1:28157761-28159202 REV

23 22177 1 0 0.17

| Symbols: RPL9 | RPL9 (RIBOSOMAL PROTEIN L9); structural constituent of ribosome | chr3:16386505-16387963 FORWARD

106

| Symbols: APE2, TPT | APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO 44775 2 2 0.17

ENVIRONMENT 2); antiporter/ triose-phosphate transm

36 24374 1 0

| Symbols: PIFI | PIFI (post-illumination chlorophyll fluorescence increase) | chr3:5356782-5358070 REVERSE 0.16

85 23720 2 2 0.16

| Symbols: | immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr2:18073995-18075385 REVERS

74 49357 3

| Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:455874-458175 FORWARD 2 0.16

82 23776 1 1 0.16

| Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase | chr4:12884649-128865

60 23644 2 1 0.16

| Symbols: | immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative | chr4:18427249-18428325 RE

41

| Symbols: | proline-rich family protein | chr5:2180669-2182284 REVERSE 24494 2 0 0.16

47 24251 1 0 0.16

| Symbols: PETB | Encodes the cytochrome b(6) subunit of the cytochrome b6f complex. | chrC:74841-76292 FORWARD

80

| Symbols: | geranylgeranyl reductase | chr1:27991248-27992845 FORWARD 52204 2 1 0.15

79 25722

| Symbols: | rhodanese-like domain-containing protein | chr2:17592105-17593305 FORWARD 12 0.15

| Symbols: | catalytic | chr2:17953719-17955774 REVERSE 45 52410 3 0 0.15

140 50508 4 0.15

| Symbols: | peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 383kDa / cyclophilin / rotamas

54 25665 2

| Symbols: PPL1 | PPL1 (PsbP-like protein 1); calcium ion binding | chr3:20514031-20515275 REVERSE0 0.15

41 24908 1

| Symbols: | thylakoid lumenal 17.9 kDa protein, chloroplast | chr4:12821496-12822389 REVERSE 0 0.15

31 25254 1 0 0.15

| Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplas

ATP 103616 6 1 0.15

| Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC1; 71 binding / ATP-dependent peptidase/ ATPase | chr5:207157

33 24725

| Symbols: | thylakoid lumen 15.0 kDa protein | chr5:21479620-21481018 FORWARD1 0 0.15

36 26039

| Symbols: | integral membrane HPP family protein | chr5:25191969-25194845 FORWARD 2 0 0.15

66 50737 2

| Symbols: GSA1 | GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE); glutamate-1-semialdehyde0.15 1 2,1-aminomutase

42 25344 1 0.15

| Symbols: | encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the0ribosomal complex | chrC:

35 26836

| Symbols: | peptidyl-prolyl cis-trans isomerase | chr5:13360459-13361377 REVERSE 2 0 0.14

125 54749 2 1 0.14

| Symbols: | ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative | chr1:4805493-4

| Symbols: APT1, ATAPT1 | APT1 (ADENINE PHOSPHORIBOSYL44 26607 2 0 0.14

TRANSFERASE 1); adenine phosphoribosyltransferase | chr1:95

44

| Symbols: | unknown protein | chr1:16983229-16984408 REVERSE 27698 2 0 0.14

76 27784

| Symbols: LHCA5 | LHCA5; pigment binding | chr1:17179353-17180439 FORWARD 1 1 0.14

102 27174 3 1

| Symbols: PPL2 | PPL2 (PsbP-like protein 2); calcium ion binding | chr2:16476335-16477653 FORWARD 0.14

33

| Symbols: | unknown protein | chr2:18953326-18954467 FORWARD27165 1 0 0.14

37 26532 1 21 0.14

| Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN:0 plant structures; EXPRE

46 27204 2

| Symbols: | plastid-lipid associated protein PAP / fibrillin family protein | chr3:9526904-95281990FORWARD 0.14

68 54325 5 1 0.14

| Symbols: PTAC16 | PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16); binding / catalytic | chr3:17228766-17231021 FORW

34 26283

| Symbols: ACHT2 | thioredoxin family protein | chr4:14535772-14537108 REVERSE 1 0 0.14

30 27490 1 0 0.14

| Symbols: BCCP2, CAC1-B | BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2); biotin binding | chr5:5038955-5040437 FORWAR

33 a proton 1 0 0.14

| Symbols: ATPI | Encodes a subunit of ATPase complex CF0, which is 27390 channel that supplies the proton motive force

175 83406 7 4

| Symbols: PSAA | Encodes psaA protein comprising the reaction center for photosystem I along with psaB0.14 protein; hydropho

50

| Symbols: | unknown protein | chr1:24036071-24037062 FORWARD28657 1 1 0.13

108 28655

| Symbols: | thylakoid lumenal 29.8 kDa protein | chr1:28960576-28961875 REVERSE2 2 0.13

44 29345

| Symbols: | ribosomal protein L3 family protein | chr2:17894898-17895713 FORWARD 1 0 0.13

45 29401

| Symbols: | ribose 5-phosphate isomerase-related | chr3:1313365-1314195 FORWARD 2 0 0.13

48 28440

| Symbols: | ribosomal protein L5 family protein | chr4:544166-545480 REVERSE 1 0 0.13

78 58924 2 1 0.13

| Symbols: RML1, PAD2, GSH1, CAD2, ATECS1, GSHA | GSH1 (GLUTAMATE-CYSTEINE LIGASE); glutamate-cysteine ligase | chr

92 59765 4 2 0.13

| Symbols: | ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism | chr5:2818395-2821149 REVERSE

| Symbols: TGG2, BGLU37 | TGG2 (GLUCOSIDE GLUCOHYDROLASE 2);6326271 4 1 0.12

hydrolase, hydrolyzing O-glycosyl compounds / thioglu

42 32727 1 0 0.12

| Symbols: | 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | chr1:45503-46789 REVER

86

| Symbols: CLPP5, NCLPP5, NCLPP1 | CLPP5 (NUCLEAR ENCODED CLP 32506 2 2 0.12

PROTEASE 5); serine-type endopeptidase | chr1:538000

45

| Symbols: CLPR2, NCLPP2, CLP2 | CLP2 (CLP PROTEASE PROTEOLYTIC31303 1 0 0.12

SUBUNIT 2); serine-type endopeptidase | chr1:422309

58

| Symbols: | uridylyltransferase-related | chr1:5773796-5776125 FORWARD 31446 1 1 0.12

36 32130

| Symbols: | binding / catalytic/ coenzyme binding | chr1:11608038-11609591 FORWARD 3 0 0.12

107 65977 5 0.12

| Symbols: NIR1, NIR, ATHNIR | NIR1 (NITRITE REDUCTASE 1); ferredoxin-nitrate reductase/ nitrite2reductase (NO-forming) | c

103

| Symbols: | flavin reductase-related | chr2:14529635-14530732 FORWARD 30566 2 2 0.12

52 65603

| Symbols: PKP1, PKP-ALPHA | PKP-ALPHA; pyruvate kinase | chr3:8139369-8141771 FORWARD 1 2 0.12

39 30512 1 0

| Symbols: FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3); superoxide dismutase | chr5:7850624-7852241 FORWARD 0.12

21 30665 1

| Symbols: | basic helix-loop-helix (bHLH) family protein | chr5:25133117-25134600 REVERSE 0 0.12

29 32581

| Symbols: | transcription initiation factor-related | chr4:10982683-10984039 REVERSE 1 0 0.12

| Symbols: | unknown protein | chr1:5514394-5515761 FORWARD 3445056 2 0 0.11

101 33755 2 1 0.11

| Symbols: | 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase | chr1:864082

83

| Symbols: | starch synthase, putative | chr1:11920582-11923506 REVERSE 67521 2 1 0.11

| Symbols: | FMN binding | chr3:999667-1001996 REVERSE 67 35258 1 1 0.11

27 34501 1 0

| Symbols: ATCYSD1, CYSD1 | CYSD1 (CYSTEINE SYNTHASE D1); cysteine synthase | chr3:1365681-1367508 FORWARD 0.11

83

| Symbols: | unknown protein | chr3:21475949-21477463 REVERSE 34184 2 1 0.11

86 34984

| Symbols: FIB | FIB (FIBRILLIN); structural molecule | chr4:1932161-1933546 FORWARD 2 2 0.11

37 35073 1 0 0.11

| Symbols: DEG5, DEGP5, HHOA | DEG5 (DEGP PROTEASE 5); catalytic/ serine-type endopeptidase/ serine-type peptidase | c

29 33946 1

| Symbols: CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin 0.110 IX methyltransferas

| Symbols: | binding / catalytic | chr4:15282281-15284064 FORWARD23 35320 2 0 0.11

50 34642 1 1

| Symbols: FSD2 | FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase | chr5:20773357-20775635 REVERSE 0.11

95 33956

| Symbols: | aldose 1-epimerase family protein | chr5:26553821-26555575 REVERSE 2 2 0.11

36

| Symbols: OEP37 | OEP37; ion channel | chr2:18200830-18202644 REVERSE 37854 1 0 0.1

72

| Symbols: | binding / protein binding | chr1:20713822-20715351 FORWARD 37558 1 1 0.1

33 38705

| Symbols: | fructose-bisphosphate aldolase, putative | chr2:15296929-15298387 REVERSE 2 0 0.1

21 36733

| Symbols: | fructosamine kinase family protein | chr3:22607152-22608883 FORWARD 1 0 0.1

| Symbols: | unknown protein | chr5:9731758-9733644 FORWARD 3842150 1 1 0.1

| Symbols: THI1, TZ, THI4 | THI1; protein homodimerization | 36 36755 1

chr5:22246634-22247891 FORWARD 0 0.1

23 41927

| Symbols: | hydrolase, alpha/beta fold family protein | chr1:19563039-19565260 REVERSE 1 0 0.09

31

| Symbols: | unknown protein | chr1:28032849-28034659 FORWARD41146 1 0 0.09

49 43355

| Symbols: | aldo/keto reductase family protein | chr2:11803981-11805965 REVERSE 1 1 0.09

45 40552 1 0 0.09

| Symbols: DHDPS2 | DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE); catalytic/ dihydrodipicolinate synthase/ lyase | chr2:1873

34 40667 1 0 0.09

| Symbols: DHDPS, DHDPS1 | dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1) | chr3:22495086-22496542 FORWA

39 40491 1

| Symbols: GGPS1 | GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase |0.09 0 chr4:17343513-17

33 41531

| Symbols: HEMC | HEMC (HYDROXYMETHYLBILANE SYNTHASE); hydroxymethylbilane2synthase | 0 0.09

chr5:2663763-2665596 REV

90 84646 2 1 0.09

| Symbols: ATCIMS, ATMETS, ATMS1 | ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ c

43 41374

| Symbols: CaS | CaS (Calcium sensing receptor) | chr5:7736760-7738412 REVERSE 2 0 0.09

24

| Symbols: ATRBL1 | ATRBL1 (Arabidopsis thaliana Rhomboid-like 1) |43959 1 0

chr2:12478245-12480121 FORWARD 0.09

54 47600 1 1 0.08

| Symbols: PDH-E1 ALPHA | PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transfe

37 46683

| Symbols: | aldo/keto reductase family protein | chr1:1191634-1193699 FORWARD 1 0 0.08

68

| Symbols: | unknown protein | chr1:11568701-11570241 FORWARD46067 1 1 0.08

55 44101 1

| Symbols: D-CDES | D-CDES (D-CYSTEINE DESULFHYDRASE); 1-aminocyclopropane-1-carboxylate 1 0.08

deaminase/ D-cysteine desu

26

| Symbols: | binding / catalytic | chr1:18687902-18690348 REVERSE 46758 1 0 0.08

49 89064

| Symbols: CR88, EMB1956, HSP90.5 | CR88; ATP binding | chr2:1281983-1285909 FORWARD 1 2 0.08

20 48358

| Symbols: | DNAJ heat shock family protein | chr2:9498162-9500459 FORWARD 1 0 0.08

86 45835 1 1 0.08

| Symbols: SSI2, FAB2 | SSI2; acyl-[acyl-carrier-protein] desaturase/ stearoyl-CoA 9-desaturase | chr2:18120107-18122495 FO

38 48180 2 0

| Symbols: CYP38 | CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase | chr3:188569-190674 FORWARD 0.08

| Symbols: JR1 | JR1 | chr3:5596096-5597709 REVERSE 41 48524 1 0 0.08

23 46526 | 0 0.08

| Symbols: CHLI1, CH42, CH-42, CHL11, CHLI-1 | CHLI1; ATPase/ magnesium chelatase 3 chr4:10201897-10203361 REVERSE

25

| Symbols: | vestitone reductase-related | chr4:16771401-16773269 44152 REVERSE 1 0 0.08

47

| Symbols: | unknown protein | chr5:10477810-10479114 FORWARD48321 2 0 0.08

45 45310 1 0 0.08

| Symbols: RPS1, ARRPS1 | RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome | chr5:1161926

31 47691 1

| Symbols: DEGP8, DEG8 | DEG8; peptidase/ serine-type peptidase | chr5:15942883-15945676 FORWARD0.08 0

| Symbols: | elongation factor Tu, putative / EF-Tu, putative |27 49607

chr4:1295751-12983542 REVERSE 0 0.08

28 putative 1

| Symbols: | elongation factor 1B-gamma, putative / eEF-1B gamma, 46598 | chr1:21377873-213801140.08 0 FORWARD

| Symbols: UBP1A | oligouridylate-binding protein, putative | 27 47546 1

chr1:20183923-20186824 REVERSE 0 0.08

| Symbols: NDF1 | NDF1 (NDH-DEPENDENT CYCLIC ELECTRON62 51275 3 0

FLOW 1) | chr1:5489314-5491199 FORWARD 0.07

85 54392 1 1 0.07

| Symbols: | hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzin

93 57059 2

| Symbols: CAT3, SEN2, ATCAT3 | CAT3 (CATALASE 3); catalase | chr1:7143142-7146193 FORWARD 2 0.07

101 57068

| Symbols: CAT1 | CAT1 (CATALASE 1); catalase | chr1:7146812-7149609 FORWARD 2 2 0.07

54 54300

| Symbols: | DNAJ heat shock protein, putative | chr1:30105398-30108873 REVERSE 1 1 0.07

30 54068 1

| Symbols: | acetolactate synthase small subunit, putative | chr2:13524271-13528246 FORWARD0 0.07

68 49914 2 1 0.07

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitocho

43

| Symbols: | unknown protein | chr3:1225961-1227310 FORWARD 50282 1 0 0.07

28 51484 1 0

| Symbols: APS1 | APS1 (ATP SULFURYLASE 1); sulfate adenylyltransferase (ATP) | chr3:8112837-8114734 0.07 FORWARD

78 109087

| Symbols: | glucan phosphorylase, putative | chr3:11252871-11257587 FORWARD 3 2 0.07

21 50400 1 0

| Symbols: FTSZ2-2 | FTSZ2-2; GTP binding / GTPase/ structural molecule | chr3:19549841-19552435 REVERSE 0.07

| Symbols: IIL1 | IIL1 (ISOPROPYL MALATE ISOMERASE LARGE 70 55834 1 1 hydro-lyase/ lyase

SUBUNIT 1); 4 iron, 4 sulfur cluster binding /0.07

36 50934 1 0 0.07

| Symbols: AGD2 | AGD2 (ABERRANT GROWTH AND DEATH 2); L,L-diaminopimelate aminotransferase/ transaminase | chr4:1

85 53626 2

| Symbols: | 6-phosphogluconate dehydrogenase family protein | chr5:16665647-16667110 REVERSE 1 0.07

| Symbols: KAS I | KAS I (3-KETOACYL-ACYL CARRIER PROTEIN 38 50895 1 0 0.07

SYNTHASE I); catalytic/ fatty-acid synthase/ transferase, transfe

43 56957 2 0 0.07

| Symbols: ADG1, APS1 | ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1); glucose-1-phosphate adenylyltransferase | chr5:19

59 52412 2

| Symbols: | acetolactate synthase small subunit, putative | chr5:5333874-5337387 FORWARD 1 0.07

26 53980 1 0

| Symbols: AOAT2, GGT2 | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); L-alanine:2-oxoglutarate aminotran0.07

25 52349 1 0 0.07

| Symbols: AGL92 | AGL92 (AGAMOUS-LIKE 92); DNA binding / transcription factor | chr1:11322692-11324176 REVERSE

50 60244 1

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:408779-410433 FORWARD 1 0.06

64 65957 1 1 0.06

| Symbols: CRTISO, CCR2 | CRTISO (CAROTENOID ISOMERASE); carotenoid isomerase | chr1:2093145-2096220 REVERSE

| Symbols: BGL1, BGLU18 | BGLU18 (BETA GLUCOSIDASE 18); 20 60877 / 0 0.06

catalytic/ cation binding1 hydrolase, hydrolyzing O-glycosyl com

56 65436

| Symbols: | AICARFT/IMPCHase bienzyme family protein | chr2:14765347-147682691 REVERSE 1 0.06

30 67501 2 0 0.06

| Symbols: DEGP2 | DEGP2; serine-type endopeptidase/ serine-type peptidase | chr2:19618372-19622164 REVERSE

93

| Symbols: | dehydratase family | chr3:8648780-8652323 FORWARD 65556 1 1 0.06

40 61929 1

| Symbols: BAM2, BMY9 | BAM2 (BETA-AMYLASE 2); beta-amylase | chr4:222422-224862 FORWARD 0 0.06

| Symbols: PPOX, HEMG1, PPO1 | PPOX; protoporphyrinogen 79 | chr4:729929-732309 FORWARD 0.06

oxidase58001 1 1

32 59948 2 0 0.06

| Symbols: | adenylosuccinate lyase, putative / adenylosuccinase, putative | chr4:10186385-10188832 REVERSE

40 65845 3 0

| Symbols: NCED4 | NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) | chr4:10481835-10483622 FORWARD 0.06

60 63065

| Symbols: | phosphoglucosamine mutase family protein | chr5:5778168-5781863 FORWARD 11 0.06

59 chr5:13584300-13588268 FORWARD

| Symbols: CAC2 | CAC2; acetyl-CoA carboxylase/ biotin carboxylase |58863 1 1 0.06

47 62190 1

| Symbols: ALDH12A1, ATP5CDH, P5CDH | ALDH12A1; 1-pyrroline-5-carboxylate dehydrogenase/ 0 0.06

3-chloroallyl aldehyde dehy

25 59361 1 0 0.06

| Symbols: ATGCH, GCH, ATRIBA1, RFD1 | ATGCH; 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II | c

27

| Symbols: | mov34 family protein | chr1:18043925-18047427 REVERSE 57746 2 0 0.06

40

| Symbols: ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP | ABA1 (ABA68026 1 0 | chr5:26754026-2

DEFICIENT 1); zeaxanthin epoxidase0.05

35 68642

| Symbols: | binding / catalytic/ coenzyme binding | chr3:6511169-6514729 FORWARD 2 0 0.05

43 67561

| Symbols: | dihydrolipoyl dehydrogenase | chr4:9153570-9157322 REVERSE 1 0 0.05

39 75356 2 0 0.05

| Symbols: VAR1, FTSH5 | VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase | chr5:16902659-169

53 85842

| Symbols: | S1 RNA-binding domain-containing protein | chr1:4361778-4365189 REVERSE 1 1 0.04

137 100026 2 1 0.04

| Symbols: AK-HSDH I, AK-HSDH | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homo

41 86345 1 0 0.04

| Symbols: ATSCO1, ATSCO1/CPEF-G, SCO1 | SCO1 (SNOWY COTYLEDON 1); ATP binding / translation elongation factor/ trans

29 105384

| Symbols: | DNA gyrase subunit A family protein | chr3:3339612-3346243 REVERSE 1 0 0.04

33

| Symbols: NDHF | Chloroplast encoded NADH dehydrogenase unit. |85696 1

chrC:110398-112638 REVERSE 0 0.04

| Symbols: | zinc ion binding | chr5:3648469-3652256 FORWARD 26 96484 1 0 0.04

35 107126 1 0 dehydrogenase (de

| Symbols: AtGLDP1 | AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1); catalytic/ glycine 0.03

30 107855 1 0

| Symbols: ATPU1, ATLDA, PU1 | ATLDA (LIMIT DEXTRINASE); alpha-amylase/ limit dextrinase/ pullulanase0.03 | chr5:1221566-12

39

| Symbols: | metalloendopeptidase | chr5:16945308-16952647 FORWARD 141374 1 0 0.03

124 161006 2 0.02

| Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | TOC159 (TRANSLOCON AT THE4OUTER ENVELOPE MEMBRANE OF CHL

32 243741

| Symbols: GLT1 | GLT1; glutamate synthase (NADH) | chr5:21700518-21709629 FORWARD 1 0 0.02

22 171534 3 0 Rab

| Symbols: MYA2, ATMYA2, XI-2, XI-6 | MYA2 (ARABIDOPSIS MYOSIN 2); GTP-dependent protein binding /0.02 GTPase bindin

26 608450 1

| Symbols: | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription0 0.01

factor binding | chr1:2506

Supplemental Table S1: Proteins identified in organellar fractions of (B) mitochondria.

prot_acc spliceform mito localisation (SUBA II)

At4g21105 1 mito localisation experimentally observed (SUBA II)

At4g20150 1 mito localisation experimentally observed (SUBA II)

At2g46390 1 mito localisation experimentally observed (SUBA II)

At3g08580 1 mito localisation experimentally observed (SUBA II)

At1g22520 1 mito localisation experimentally observed (SUBA II)

At1g72170 1 mito localisation experimentally observed (SUBA II)

At1g08480 1 mito localisation experimentally observed (SUBA II)

At5g65880 1

At5g13490 1 mito localisation experimentally observed (SUBA II)

At3g14420 1

At5g15320 2

At5g08670 1 mito localisation experimentally observed (SUBA II)

At5g08690 1 mito localisation experimentally observed (SUBA II)

At5g08680 1 mito localisation experimentally observed (SUBA II)

At3g14415 1

At5g15320 1

At4g22310 1 mito localisation experimentally observed (SUBA II)

At5g14040 1 mito localisation experimentally observed (SUBA II)

At3g14420 6

At5g08040 1 mito localisation experimentally observed (SUBA II)

At3g61440 2 mito localisation experimentally observed (SUBA II)

At4g37930 1 mito localisation experimentally observed (SUBA II)

At4g28390 1 mito localisation experimentally observed (SUBA II)

At3g46430 1 mito localisation experimentally observed (SUBA II)

At2g42210 1 mito localisation experimentally observed (SUBA II)

At3g61440 1 mito localisation experimentally observed (SUBA II)

At2g27730 1 mito localisation experimentally observed (SUBA II)

At5g40770 1 mito localisation experimentally observed (SUBA II)

At3g10920 1 mito localisation experimentally observed (SUBA II)

At3g59280 1 mito localisation experimentally observed (SUBA II)

At1g51650 1 mito localisation experimentally observed (SUBA II)

At5g41685 1 mito localisation experimentally observed (SUBA II)

At3g01130 2

At4g16450 1 mito localisation experimentally observed (SUBA II)

At1g68680 1

At5g05370 1 mito localisation experimentally observed (SUBA II)

At5g14780 1 mito localisation experimentally observed (SUBA II)

At3g10860 1 mito localisation experimentally observed (SUBA II)

AtMg01190 1 mito localisation experimentally observed (SUBA II)

At1g22840 1 mito localisation experimentally observed (SUBA II)

At2g40765 1 mito localisation experimentally observed (SUBA II)

At2g20360 1 mito localisation experimentally observed (SUBA II)

At1g22520 2 mito localisation experimentally observed (SUBA II)

At2g28430 1

At1g07830 1

At1g48030 1 mito localisation experimentally observed (SUBA II)

At5g50850 1 mito localisation experimentally observed (SUBA II)

At1g53240 1 mito localisation experimentally observed (SUBA II)

At2g34420 1

At1g20620 1 mito localisation experimentally observed (SUBA II)

At4g13850 1 mito localisation experimentally observed (SUBA II)

At1g11860 1 mito localisation experimentally observed (SUBA II)

At1g29910 1 mito localisation experimentally observed (SUBA II)

At1g29930 1

At3g62530 1 mito localisation experimentally observed (SUBA II)

At5g67500 1 mito localisation experimentally observed (SUBA II)

At4g35090 1 mito localisation experimentally observed (SUBA II)

AtCg00490 1

At1g20620 2 mito localisation experimentally observed (SUBA II)

At1g03860 1 mito localisation experimentally observed (SUBA II)

AtMg00070 1 mito localisation experimentally observed (SUBA II)

At1g20620 5 mito localisation experimentally observed (SUBA II)

At4g33010 1 mito localisation experimentally observed (SUBA II)

At3g23990 1 mito localisation experimentally observed (SUBA II)

At2g34430 1

At2g05070 1

At2g05100 1

At3g27690 1

At3g56070 1

At1g23310 2

At3g02090 1 mito localisation experimentally observed (SUBA II)

At5g11770 1 mito localisation experimentally observed (SUBA II)

At2g07698 1 mito localisation experimentally observed (SUBA II)

At3g12260 1 mito localisation experimentally observed (SUBA II)

At2g44350 1 mito localisation experimentally observed (SUBA II)

At1g67090 1

At2g20530 1 mito localisation experimentally observed (SUBA II)

At5g13450 1 mito localisation experimentally observed (SUBA II)

At3g48140 1

At3g17240 1 mito localisation experimentally observed (SUBA II)

At3g22200 1 mito localisation experimentally observed (SUBA II)

At2g33210 1 mito localisation experimentally observed (SUBA II)

At1g79440 1 mito localisation experimentally observed (SUBA II)

At5g47890 1 mito localisation experimentally observed (SUBA II)

At5g10860 1 mito localisation experimentally observed (SUBA II)

At5g54270 1

At5g03290 1 mito localisation experimentally observed (SUBA II)

At3g15020 1 mito localisation experimentally observed (SUBA II)

At3g62810 1

At1g59900 1 mito localisation experimentally observed (SUBA II)

At2g35795 1

At2g05710 1 mito localisation experimentally observed (SUBA II)

At5g25940 1 mito localisation experimentally observed (SUBA II)

At5g07440 1 mito localisation experimentally observed (SUBA II)

At4g10040 1 mito localisation experimentally observed (SUBA II)

At3g15660 1 mito localisation experimentally observed (SUBA II)

At5g19760 1 mito localisation experimentally observed (SUBA II)

At2g20420 1 mito localisation experimentally observed (SUBA II)

At2g39730 1

At4g35260 1 mito localisation experimentally observed (SUBA II)

At4g29130 1 mito localisation experimentally observed (SUBA II)

At2g30970 1 mito localisation experimentally observed (SUBA II)

At1g49410 1 mito localisation experimentally observed (SUBA II)

At5g38410 1

At5g38420 1

At5g38430 1

At5g09660 2

At3g58750 1

At2g19860 2 mito localisation experimentally observed (SUBA II)

At2g33040 1 mito localisation experimentally observed (SUBA II)

At1g74230 1 mito localisation experimentally observed (SUBA II)

At5g09660 3

At5g15090 1 mito localisation experimentally observed (SUBA II)

At3g01280 1 mito localisation experimentally observed (SUBA II)

At5g09660 1

At2g46540 1 mito localisation experimentally observed (SUBA II)

At2g19750 1

At1g47260 1 mito localisation experimentally observed (SUBA II)

At3g06320 1

At3g27280 1 mito localisation experimentally observed (SUBA II)

At2g47380 1 mito localisation experimentally observed (SUBA II)

At5g09660 4

At5g10730 1

At4g35000 1 mito localisation experimentally observed (SUBA II)

At4g28510 1 mito localisation experimentally observed (SUBA II)

At2g17130 1 mito localisation experimentally observed (SUBA II)

At2g28900 1 mito localisation experimentally observed (SUBA II)

At3g07910 1

At5g26780 1 mito localisation experimentally observed (SUBA II)

At1g18630 1

At3g54110 1 mito localisation experimentally observed (SUBA II)

At3g48000 1 mito localisation experimentally observed (SUBA II)

At1g68010 1

At5g24165 1

At4g18360 2

At4g20360 1

At5g66760 1 mito localisation experimentally observed (SUBA II)

At3g15590 1 mito localisation experimentally observed (SUBA II)

At1g24180 1 mito localisation experimentally observed (SUBA II)

At5g67590 1 mito localisation experimentally observed (SUBA II)

At2g45740 1 mito localisation experimentally observed (SUBA II)

At2g07696 1

At5g54580 1

At5g20080 1 mito localisation experimentally observed (SUBA II)

At4g27585 1 mito localisation experimentally observed (SUBA II)

At2g31490 1 mito localisation experimentally observed (SUBA II)

At1g64220 1 mito localisation experimentally observed (SUBA II)

At1g51980 1 mito localisation experimentally observed (SUBA II)

At1g15120 1 mito localisation experimentally observed (SUBA II)

At2g19860 1 mito localisation experimentally observed (SUBA II)

At4g37910 1 mito localisation experimentally observed (SUBA II)

At1g32470 1 mito localisation experimentally observed (SUBA II)

At2g35370 1 mito localisation experimentally observed (SUBA II)

At2g14247 1

At2g42790 1

At1g12900 3

At3g55410 1 mito localisation experimentally observed (SUBA II)

At2g26080 1 mito localisation experimentally observed (SUBA II)

At4g33666 1

At5g50810 1 mito localisation experimentally observed (SUBA II)

At4g01100 1 mito localisation experimentally observed (SUBA II)

At5g55125 1

At4g26910 3 mito localisation experimentally observed (SUBA II)

At4g26970 1 mito localisation experimentally observed (SUBA II)

At3g12370 1 mito localisation experimentally observed (SUBA II)

At4g23620 1

At1g47278 1

At3g09810 1 mito localisation experimentally observed (SUBA II)

At1g61570 1 mito localisation experimentally observed (SUBA II)

At5g09600 2 mito localisation experimentally observed (SUBA II)

At5g46800 1 mito localisation experimentally observed (SUBA II)

At5g09590 1 mito localisation experimentally observed (SUBA II)

At4g39660 1 mito localisation experimentally observed (SUBA II)

At3g26650 1

At5g43970 1 mito localisation experimentally observed (SUBA II)

At5g08530 1 mito localisation experimentally observed (SUBA II)

At3g16480 1 mito localisation experimentally observed (SUBA II)

At3g06050 1 mito localisation experimentally observed (SUBA II)

At2g39725 1

At3g27890 1

At5g63000 1

AtMg00510 1 mito localisation experimentally observed (SUBA II)

At2g13360 1

At3g06860 1

At4g31830 1

At3g27240 1 mito localisation experimentally observed (SUBA II)

At3g20000 1 mito localisation experimentally observed (SUBA II)

At1g14980 1 mito localisation experimentally observed (SUBA II)

At4g02770 1

At2g26240 1 mito localisation experimentally observed (SUBA II)

At2g47840 1

At3g11940 1

At5g16060 1

At5g16950 1

At5g42150 1 mito localisation experimentally observed (SUBA II)

At5g23250 1 mito localisation experimentally observed (SUBA II)

At4g25100 1 mito localisation experimentally observed (SUBA II)

At3g13860 1 mito localisation experimentally observed (SUBA II)

At1g07660 1

At4g32210 1

At5g08300 1 mito localisation experimentally observed (SUBA II)

At4g02930 1 mito localisation experimentally observed (SUBA II)

At2g33150 1 mito localisation experimentally observed (SUBA II)

At5g11520 1

At5g41761 1

At4g26910 1 mito localisation experimentally observed (SUBA II)

At2g02050 1 mito localisation experimentally observed (SUBA II)

At3g56460 1

At5g03030 1

At5g20090 1 mito localisation experimentally observed (SUBA II)

At4g11010 1 mito localisation experimentally observed (SUBA II)

At4g05590 1 mito localisation experimentally observed (SUBA II)

At3g18410 1 mito localisation experimentally observed (SUBA II)

At3g07770 1 mito localisation experimentally observed (SUBA II)

At2g37410 1 mito localisation experimentally observed (SUBA II)

At3g48030 1

At4g14430 1

At4g29010 1

At4g29660 1

At5g55140 1

At4g35650 1 mito localisation experimentally observed (SUBA II)

At2g47510 1 mito localisation experimentally observed (SUBA II)

At2g42310 1 mito localisation experimentally observed (SUBA II)

At1g71260 1 mito localisation experimentally observed (SUBA II)

At1g49140 1 mito localisation experimentally observed (SUBA II)

At1g70580 1

At3g54890 1

At4g34620 1

AtCg00480 1

At5g63400 1 mito localisation experimentally observed (SUBA II)

At5g37510 1 mito localisation experimentally observed (SUBA II)

At3g52300 2 mito localisation experimentally observed (SUBA II)

At5g66510 1 mito localisation experimentally observed (SUBA II)

At5g63510 1 mito localisation experimentally observed (SUBA II)

At3g48680 1 mito localisation experimentally observed (SUBA II)

At1g47420 1 mito localisation experimentally observed (SUBA II)

At5g59880 2 mito localisation experimentally observed (SUBA II)

At4g02580 1 mito localisation experimentally observed (SUBA II)

At2g34050 1

At3g62030 1

At4g25130 1

At5g44730 1

At5g50950 3 mito localisation experimentally observed (SUBA II)

At5g61030 1 mito localisation experimentally observed (SUBA II)

At5g18170 1 mito localisation experimentally observed (SUBA II)

At1g06290 1

At5g64400 1

AtCg00470 1

At2g41380 1 mito localisation experimentally observed (SUBA II)

At4g14145 1

At5g64816 1

AtCg00750 1

At5g40650 1 mito localisation experimentally observed (SUBA II)

At4g34030 1 mito localisation experimentally observed (SUBA II)

At3g58610 1 mito localisation experimentally observed (SUBA II)

At1g53000 1 mito localisation experimentally observed (SUBA II)

At1g42970 1

At5g02960 1

At5g45390 1

AtCg00770 1

At5g59880 1 mito localisation experimentally observed (SUBA II)

At3g01910 2 mito localisation experimentally observed (SUBA II)

At5g55070 1 mito localisation experimentally observed (SUBA II)

At2g33220 1 mito localisation experimentally observed (SUBA II)

At1g07920 1 mito localisation experimentally observed (SUBA II)

At1g04630 1 mito localisation experimentally observed (SUBA II)

At1g24360 1

At3g09680 1

At1g63940 1 mito localisation experimentally observed (SUBA II)

At3g10370 1 mito localisation experimentally observed (SUBA II)

At1g04270 1

At1g48320 1

At1g55670 1

At1g56560 1

At1g73940 1

At2g26230 1

At4g35490 1

At5g43640 1

At5g65940 2

At5g50950 2 mito localisation experimentally observed (SUBA II)

At2g14170 2 mito localisation experimentally observed (SUBA II)

At2g33600 1

AtCg00900 1

At5g65940 3

At5g50950 1 mito localisation experimentally observed (SUBA II)

At2g23370 1 mito localisation experimentally observed (SUBA II)

At2g07707 1 mito localisation experimentally observed (SUBA II)

At1g20630 1 mito localisation experimentally observed (SUBA II)

At1g57660 1

At1g76060 1

At2g22780 1

At3g11070 1

At3g48170 1

At4g16760 1

At4g34870 1

At4g37660 1

AtCg00420 1

AtCg00500 1

At3g52300 1 mito localisation experimentally observed (SUBA II)

At5g65750 1 mito localisation experimentally observed (SUBA II)

At3g15090 1 mito localisation experimentally observed (SUBA II)

At2g31570 1

At3g60750 1

At4g36420 1

At4g39120 1

At5g05520 1

AtMg00080 1 mito localisation experimentally observed (SUBA II)

At5g53350 1 mito localisation experimentally observed (SUBA II)

At1g72750 1 mito localisation experimentally observed (SUBA II)

At2g05990 1

At5g48230 1

At5g13450 2 mito localisation experimentally observed (SUBA II)

At3g01910 1 mito localisation experimentally observed (SUBA II)

At2g14170 1 mito localisation experimentally observed (SUBA II)

At1g56190 2 mito localisation experimentally observed (SUBA II)

AtMg00090 1 mito localisation experimentally observed (SUBA II)

At5g58070 1 mito localisation experimentally observed (SUBA II)

At5g54100 1 mito localisation experimentally observed (SUBA II)

At5g47030 1 mito localisation experimentally observed (SUBA II)

At5g40930 1 mito localisation experimentally observed (SUBA II)

At3g22330 1 mito localisation experimentally observed (SUBA II)

At2g07725 1 mito localisation experimentally observed (SUBA II)

At1g09340 1

At2g07727 1

At2g35010 1

At2g42490 1

At3g06690 1

At3g21400 1

At3g22960 1

At4g38970 1

At5g19550 1

At5g49840 1

At1g63940 3 mito localisation experimentally observed (SUBA II)

At4g03280 2

At3g59760 3 mito localisation experimentally observed (SUBA II)

At4g11060 1 mito localisation experimentally observed (SUBA II)

At3g27080 1 mito localisation experimentally observed (SUBA II)

At2g18450 1 mito localisation experimentally observed (SUBA II)

At1g15480 1

At5g23200 1

At3g01980 2

AtMg00060 1 mito localisation experimentally observed (SUBA II)

At5g13420 1 mito localisation experimentally observed (SUBA II)

At4g31460 1 mito localisation experimentally observed (SUBA II)

At3g58140 1 mito localisation experimentally observed (SUBA II)

At1g27390 1 mito localisation experimentally observed (SUBA II)

At1g33360 1

At1g54340 1

At1g79750 1

At2g30870 1

At3g51840 1

At5g58250 1

At1g63940 4 mito localisation experimentally observed (SUBA II)

At1g56190 1 mito localisation experimentally observed (SUBA II)

At4g03280 1

At5g26000 2

At4g35850 1 mito localisation experimentally observed (SUBA II)

At4g23900 1 mito localisation experimentally observed (SUBA II)

At3g61070 1 mito localisation experimentally observed (SUBA II)

At3g60100 1 mito localisation experimentally observed (SUBA II)

At3g12780 1 mito localisation experimentally observed (SUBA II)

At2g30720 1 mito localisation experimentally observed (SUBA II)

At2g16460 1 mito localisation experimentally observed (SUBA II)

At1g79010 1 mito localisation experimentally observed (SUBA II)

At1g10310 1

At1g32480 1

At2g25080 1

At4g16800 1

At4g28070 1

At5g02740 1

At5g13510 1

At5g15980 1

At5g43680 1

At5g46780 1

At5g62720 1

AtCg00280 1

At4g23100 2

At5g66860 1 mito localisation experimentally observed (SUBA II)

At5g41670 1 mito localisation experimentally observed (SUBA II)

At5g23140 1 mito localisation experimentally observed (SUBA II)

At5g14590 1 mito localisation experimentally observed (SUBA II)

At4g30490 1 mito localisation experimentally observed (SUBA II)

At1g45332 1 mito localisation experimentally observed (SUBA II)

At1g04640 1 mito localisation experimentally observed (SUBA II)

At1g14620 1

At1g47840 1

At2g35790 1

At3g24570 1

At3g47470 1

At3g61470 1

At4g05530 1

At4g25280 1

AtCg00120 1

AtCg00160 1

At2g36460 2

At5g40810 2 mito localisation experimentally observed (SUBA II)

At2g04030 2 mito localisation experimentally observed (SUBA II)

AtMg00160 1 mito localisation experimentally observed (SUBA II)

At5g42650 1 mito localisation experimentally observed (SUBA II)

At1g19580 1 mito localisation experimentally observed (SUBA II)

At1g07210 1

At1g14410 1

At1g61520 1

At2g31670 1

At4g01310 1

At4g05160 1

At4g10340 1

At4g16210 1

At4g39980 1

At5g04820 1

At5g15910 1

AtCg00830 1

At5g55610 2

At5g62530 1 mito localisation experimentally observed (SUBA II)

At5g44140 1 mito localisation experimentally observed (SUBA II)

At4g28220 1 mito localisation experimentally observed (SUBA II)

At4g05020 1 mito localisation experimentally observed (SUBA II)

At3g27380 1 mito localisation experimentally observed (SUBA II)

At2g28000 1 mito localisation experimentally observed (SUBA II)

At2g15620 1 mito localisation experimentally observed (SUBA II)

At1g02560 1

At2g37250 1

At2g42450 1

At2g43610 1

At2g43620 1

At3g12800 1

At3g15290 1

At4g02510 1

At5g01530 1

AtMg00516 1 mito localisation experimentally observed (SUBA II)

At4g39690 1 mito localisation experimentally observed (SUBA II)

At4g00570 1 mito localisation experimentally observed (SUBA II)

At3g17465 1 mito localisation experimentally observed (SUBA II)

At2g13560 1 mito localisation experimentally observed (SUBA II)

At1g26460 1 mito localisation experimentally observed (SUBA II)

At1g19140 1 mito localisation experimentally observed (SUBA II)

At1g75290 1

At1g80270 1

At2g20060 1

At2g20890 1

At3g02780 1

At4g09750 1

At5g16440 1

At5g65720 2 mito localisation experimentally observed (SUBA II)

At5g61810 2 mito localisation experimentally observed (SUBA II)

At2g36460 1

At3g01500 3

AtMg00560 1 mito localisation experimentally observed (SUBA II)

At5g40660 1 mito localisation experimentally observed (SUBA II)

At5g26860 1 mito localisation experimentally observed (SUBA II)

At4g04870 1 mito localisation experimentally observed (SUBA II)

At3g48850 1 mito localisation experimentally observed (SUBA II)

At3g27620 1 mito localisation experimentally observed (SUBA II)

At3g22360 1 mito localisation experimentally observed (SUBA II)

At3g10270 1 mito localisation experimentally observed (SUBA II)

At1g05240 1

At1g06130 1

At1g19800 1

At1g52760 1

At2g35690 1

At3g52380 1

At3g52930 1

At3g63410 1

At5g08540 1

At5g24400 1

At1g71920 3

At1g03090 2 mito localisation experimentally observed (SUBA II)

AtMg00830 1 mito localisation experimentally observed (SUBA II)

At5g04130 1 mito localisation experimentally observed (SUBA II)

At4g11120 1 mito localisation experimentally observed (SUBA II)

At3g47520 1 mito localisation experimentally observed (SUBA II)

At3g45770 1 mito localisation experimentally observed (SUBA II)

At3g22370 1 mito localisation experimentally observed (SUBA II)

At3g15000 1 mito localisation experimentally observed (SUBA II)

At3g13110 1 mito localisation experimentally observed (SUBA II)

At2g45030 1 mito localisation experimentally observed (SUBA II)

At2g43750 1 mito localisation experimentally observed (SUBA II)

At2g40800 1 mito localisation experimentally observed (SUBA II)

At1g74240 1 mito localisation experimentally observed (SUBA II)

At1g23850 1

At1g30510 1

At1g54010 1

At1g73060 1

At1g75330 1

At2g06050 1

At2g30650 1

At2g30660 1

At2g45290 1

At3g03780 1

At3g06483 1

At3g20320 1

At3g61520 1

At4g04640 1

At4g05390 1

At4g12130 1

At4g30580 1

At5g17920 1

At5g28460 1

At1g71920 1

At4g35830 1 mito localisation experimentally observed (SUBA II)

At1g72330 2 mito localisation experimentally observed (SUBA II)

At5g17230 3

At2g34630 2

At4g00520 2

At4g19880 2

At5g35630 1 mito localisation experimentally observed (SUBA II)

At5g23300 1 mito localisation experimentally observed (SUBA II)

At4g36680 1 mito localisation experimentally observed (SUBA II)

At4g31810 1 mito localisation experimentally observed (SUBA II)

At3g56430 1 mito localisation experimentally observed (SUBA II)

At3g45300 1 mito localisation experimentally observed (SUBA II)

At3g03910 1 mito localisation experimentally observed (SUBA II)

At2g38670 1 mito localisation experimentally observed (SUBA II)

At2g29080 1 mito localisation experimentally observed (SUBA II)

At2g25840 1 mito localisation experimentally observed (SUBA II)

At1g61870 1 mito localisation experimentally observed (SUBA II)

At1g55890 1 mito localisation experimentally observed (SUBA II)

At1g21150 1 mito localisation experimentally observed (SUBA II)

At1g01090 1

At1g03475 1

At1g08750 1

At1g30120 1

At1g34430 1

At1g43800 1

At1g65930 1

At2g34590 1

At2g43710 1

At3g60500 1

At4g13330 1

At4g20020 1

At4g35630 1

At5g02130 1

At5g09450 1

At5g14200 1

At5g20980 1

At5g22350 1

At5g33320 1

At5g44250 1

At5g51740 1

At5g53140 1

At5g57590 1

At5g63620 1

At5g65720 1 mito localisation experimentally observed (SUBA II)

At5g61810 1 mito localisation experimentally observed (SUBA II)

AtMg00285 1 mito localisation experimentally observed (SUBA II)

At5g07320 1 mito localisation experimentally observed (SUBA II)

At3g46950 1 mito localisation experimentally observed (SUBA II)

At3g06850 1 mito localisation experimentally observed (SUBA II)

At3g05780 1 mito localisation experimentally observed (SUBA II)

At1g61960 1 mito localisation experimentally observed (SUBA II)

At1g60770 1 mito localisation experimentally observed (SUBA II)

At1g06950 1

At1g20260 1

At1g51310 1

At1g76030 1

At2g24200 1

At2g38630 1

At2g44640 1

At3g02360 1

At3g14390 1

At3g25860 1

At3g48730 1

At3g49990 1

At3g54190 1

At4g32060 1

At4g38510 1

At5g11880 1

At5g56730 1

At1g72330 1 mito localisation experimentally observed (SUBA II)

At5g64050 1 mito localisation experimentally observed (SUBA II)

At5g52520 1 mito localisation experimentally observed (SUBA II)

At4g17300 1 mito localisation experimentally observed (SUBA II)

At3g13930 1 mito localisation experimentally observed (SUBA II)

At1g17290 1 mito localisation experimentally observed (SUBA II)

At1g01280 1

At1g20510 1

At1g22410 1

At1g59990 1

At1g72040 1

At1g72810 1

At1g74960 1

At2g23890 1

At2g35040 1

At2g35720 1

At3g16170 1

At3g16910 1

At3g21720 1

At3g22310 1

At3g25660 1

At3g27180 1

At4g30910 1

At4g30920 1

At5g13110 1

At5g14260 1

At5g17530 1

At5g35360 1

At5g48110 1

At5g49970 1

At5g52920 1

At5g60960 1

At2g31060 2

At5g58270 1 mito localisation experimentally observed (SUBA II)

At5g42390 1 mito localisation experimentally observed (SUBA II)

At5g27540 1 mito localisation experimentally observed (SUBA II)

At5g26830 1 mito localisation experimentally observed (SUBA II)

At5g12290 1 mito localisation experimentally observed (SUBA II)

At4g36580 1 mito localisation experimentally observed (SUBA II)

At4g33760 1 mito localisation experimentally observed (SUBA II)

At3g55400 1 mito localisation experimentally observed (SUBA II)

At3g49240 1 mito localisation experimentally observed (SUBA II)

At3g47930 1 mito localisation experimentally observed (SUBA II)

At2g43400 1 mito localisation experimentally observed (SUBA II)

At1g06310 1

At1g15500 1

At1g24280 1

At1g28320 1

At1g50380 1

At1g75200 1

At1g77590 1

At1g80300 1

At2g04750 1

At2g18330 1

At2g31240 1

At3g02490 1

At3g03060 1

At3g05820 1

At3g06500 1

At3g59910 1

At4g01660 1

At5g16930 1

At5g27600 1

At5g36210 1

At5g48960 1

At5g53460 1

At4g35830 2 mito localisation experimentally observed (SUBA II)

At3g59820 1 mito localisation experimentally observed (SUBA II)

At3g10690 1 mito localisation experimentally observed (SUBA II)

At3g05790 1 mito localisation experimentally observed (SUBA II)

At1g07510 1 mito localisation experimentally observed (SUBA II)

At1g10270 1

At1g12800 1

At1g65540 1

At1g76280 1

At3g11390 1

At3g19620 1

At3g43190 1

At5g20830 1

At5g15700 1 mito localisation experimentally observed (SUBA II)

At4g31210 1 mito localisation experimentally observed (SUBA II)

At3g19170 1 mito localisation experimentally observed (SUBA II)

At1g65780 1

At3g02650 1

At3g19740 1

At3g29320 1

At3g44630 1

At4g10930 1

At4g36120 1

At2g35110 2

At4g17140 2

AtCg00860 1

fied in organellar fractions of (B) mitochondria.

prot_desc prot_score

| Symbols: | cytochrome-c oxidase/ electron carrier | chr4:11266273-11266724 FORWARD 622

| Symbols: | unknown protein | chr4:10888529-10889500 REVERSE 644

| Symbols: | unknown protein | chr2:19042466-19043018 REVERSE 267

3909

| Symbols: AAC1 | AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding | chr3:2605706-2607030 REVERSE

| Symbols: | unknown protein | chr1:7953299-7954304 REVERSE 667

| Symbols: | unknown protein | chr1:27156403-27157516 FORWARD 673

| Symbols: | unknown protein | chr1:2684340-2685395 FORWARD 427

| Symbols: | unknown protein | chr5:26353095-26353594 FORWARD 179

1471

| Symbols: AAC2 | AAC2 (ADP/ATP carrier 2); ATP:ADP antiporter/ binding | chr5:4336034-4337379 FORWARD

923

| Symbols: | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid

| Symbols: | unknown protein | chr5:4977647-4978658 FORWARD 115

1295

| Symbols: | ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism | chr5:2818395-2821149 REVERSE

| Symbols: | ATP synthase beta chain 2, mitochondrial | chr5:2825739-2828352 FORWARD 1295

| Symbols: | ATP synthase beta chain, mitochondrial, putative | chr5:2821992-2824683 FORWARD 1295

949

| Symbols: | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid

| Symbols: | unknown protein | chr5:4977647-4978658 FORWARD 115

| Symbols: | unknown protein | chr4:11791443-11792638 FORWARD 408

| Symbols: | mitochondrial phosphate transporter | chr5:4531059-4532965 REVERSE 636

689

| Symbols: | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid

131

| Symbols: TOM5 | TOM5 (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG) | chr5:2577358-2578073 REVE

628

| Symbols: ATCYSC1, CYSC1 | CYSC1 (CYSTEINE SYNTHASE C1); L-3-cyanoalanine synthase/ cysteine synthase | chr3:22736383

916

| Symbols: SHM1, STM, SHMT1 | SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase

1315

| Symbols: AAC3, ATAAC3 | AAC3 (ADP/ATP CARRIER 3); ATP:ADP antiporter/ binding | chr4:14041486-14042781 REVERSE

| Symbols: | unknown protein | chr3:17087687-17088497 FORWARD 151

327

| Symbols: ATOEP16-3, OEP16-3 | mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family pro

678

| Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 | CYSC1 (CYSTEINE SYNTHASE C1); L-3-cyanoalanine synthase/ cysteine synthase

| Symbols: | unknown protein | chr2:11820056-11820867 REVERSE 1525

| Symbols: ATPHB3 | ATPHB3 (PROHIBITIN 3) | chr5:16315589-16316621 REVERSE 387

| Symbols: MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); metal ion 223 binding / superoxide dismu

| Symbols: TXR1 | TXR1 (THAXTOMIN A RESISTANT 1) | chr3:21909266-21910519 REVERSE 149

| Symbols: | ATP synthase epsilon chain, mitochondrial | chr1:19152680-19153641 FORWARD 153

102

| Symbols: | mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1) | chr5:1

| Symbols: | unknown protein | chr3:44911-45522 REVERSE 72

| Symbols: | unknown protein | chr4:9280132-9280541 FORWARD 371

| Symbols: | unknown protein | chr1:25785627-25786622 FORWARD 123

131

| Symbols: | ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C redu

357

| Symbols: FDH | FDH (FORMATE DEHYDROGENASE); NAD or NADH binding / binding / catalytic/ cofactor binding / oxidoredu

122

| Symbols: | ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C redu

| Symbols: ATP1 | ATPase subunit 1 | chrM:302166-303689 REVERSE 742

ion

| Symbols: CYTC-1, ATCYTC-A | CYTC-1 (CYTOCHROME C-1); electron carrier/ heme binding / iron 125 binding | chr1:8079384

| Symbols: | unknown protein | chr2:17012301-17013081 FORWARD 388

| Symbols: | binding / catalytic/ coenzyme binding | chr2:8786070-8789098 FORWARD 501

| Symbols: | unknown protein | chr1:7952996-7954304 REVERSE 654

| Symbols: | unknown protein | chr2:12159736-12160387 REVERSE 47

| Symbols: | ribosomal protein L29 family protein | chr1:2422549-2423392 FORWARD 119

453

| Symbols: mtLPD1 | mtLPD1 (mitochondrial lipoamide dehydrogenase 1); ATP binding / dihydrolipoyl dehydrogenase | chr1:

267

| Symbols: MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) | chr5:20689671-20692976

| Symbols: | malate dehydrogenase (NAD), mitochondrial | chr1:19854966-19856802 REVERSE 333

| Symbols: LHB1B2, LHCB1.5 | LHB1B2; chlorophyll binding | chr2:14522716-14523513 REVERSE 652

| Symbols: CAT3, SEN2, ATCAT3 | CAT3 (CATALASE 3); catalase | chr1:7143142-7146193 FORWARD 1395

160

| Symbols: ATGRP2, GR-RBP2, GRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double

| Symbols: | aminomethyltransferase, putative | chr1:4001801-4003245 FORWARD 289

652

| Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding | chr1:10472443-104

652

| Symbols: CAB1, AB140, CAB140, LHCB1.3 | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding | chr1:10478

| Symbols: | PBS lyase HEAT-like repeat-containing protein | chr3:23132219-23133121 FORWARD67 1

anion

| Symbols: VDAC2, ATVDAC2 | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2); voltage-gated 140 channel | chr5:26935

| Symbols: CAT2 | CAT2 (CATALASE 2); catalase | chr4:16700937-16703215 REVERSE 639

257

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in

| Symbols: CAT3, SEN2, ATCAT3 | CAT3 (CATALASE 3); catalase | chr1:7143142-7145807 FORWARD 414

| Symbols: ATPHB2 | ATPHB2 (PROHIBITIN 2) | chr1:979611-981157 REVERSE 294

| Symbols: NAD9 | NADH dehydrogenase subunit 9 | chrM:23663-24235 REVERSE 115

| Symbols: CAT3, SEN2, ATCAT3 | CAT3 (CATALASE 3); catalase | chr1:7143142-7146193 FORWARD 432

716

| Symbols: AtGLDP1 | AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1); catalytic/ glycine dehydrogenase (de

427

| Symbols: HSP60, HSP60-3B | HSP60 (HEAT SHOCK PROTEIN 60); ATP binding | chr3:8669013-8672278 FORWARD

| Symbols: LHB1B1, LHCB1.4 | LHB1B1; chlorophyll binding | chr2:14524818-14525618 FORWARD 647

| Symbols: LHCB2.2, LHCB2 | LHCB2.2; chlorophyll binding | chr2:1799436-1800329 REVERSE 647

| Symbols: LHCB2.1, LHCB2 | LHCB2.1; chlorophyll binding | chr2:1823449-1824331 REVERSE 647

| Symbols: LHCB2.4, LHCB2.3, LHCB2 | LHCB2.3; chlorophyll binding | chr3:10256002-10256921 FORWARD647

104

| Symbols: ROC2 | ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase | chr3:2080

216

| Symbols: GGT1, AOAT1 | GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE); L-alanine:2-oxoglutarate aminotransfera

202

| Symbols: MPPBETA | mitochondrial processing peptidase beta subunit, putative | chr3:365624-368526 FORWARD

77

| Symbols: | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial | chr5:3791148-3792929 REVERSE

| Symbols: | ATP synthase alpha chain, mitochondrial, putative | chr2:3361474-3364028 FORWARD 742

| Symbols: | complex 1 family protein / LVR family protein | chr3:3909252-3910337 REVERSE 48

393

| Symbols: ATCS, CSY4 | ATCS; ATP binding / ATP citrate synthase/ citrate (SI)-synthase | chr2:18316673-18320524 FORWARD

ion

| Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A); copper113 binding / ribulose-bisph

| Symbols: ATPHB6 | ATPHB6 (PROHIBITIN 6) | chr2:8842300-8843787 FORWARD 269

362

| Symbols: | ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit,

| Symbols: | senescence-associated protein, putative | chr3:17778471-17779299 FORWARD 50

317

| Symbols: mtLPD2 | mtLPD2 (LIPOAMIDE DEHYDROGENASE 2); ATP binding / dihydrolipoyl dehydrogenase | chr3:5890278-5

409

| Symbols: POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase/ 4-aminobutyra

268

| Symbols: HSP60-2 | HSP60-2 (HEAT SHOCK PROTEIN 60-2); ATP binding | chr2:14075093-14078568 REVERSE

NADH

| Symbols: ALDH5F1, SSADH1, SSADH | ALDH5F1; 3-chloroallyl aldehyde dehydrogenase/ NAD or 441 binding / succinate-s

| Symbols: | NADH-ubiquinone oxidoreductase B8 subunit, putative | chr5:19388806-19390409 FORWARD 60

| Symbols: | CBS domain-containing protein | chr5:3429173-3430142 REVERSE 171

| Symbols: LHCB3, LHCB3*1 | LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3); 629 structural molecule | chr5:2

307

| Symbols: | isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative | chr5:794043-795939 FORWARD

| Symbols: | malate dehydrogenase (NAD), mitochondrial, putative | chr3:5056139-5057941 FORWARD 223

| Symbols: | complex 1 family protein / LVR family protein | chr3:23227763-23228180 FORWARD 29

120

| Symbols: AT-E1 ALPHA | AT-E1 ALPHA; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as accepto

| Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:15042321-15043334 FORWARD 97

| chr2:2141591-2146350 FO

| Symbols: | aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative 607

| Symbols: | early nodulin-related | chr5:9054252-9055151 REVERSE 85

922

| Symbols: GDH2 | GDH2 (GLUTAMATE DEHYDROGENASE 2); ATP binding / glutamate dehydrogenase [NAD(P)+]/ glutamate d

88

| Symbols: CYTC-2 | CYTC-2 (cytochrome c-2); electron carrier/ heme binding / iron ion binding | chr4:6277083-6278281 FOR

| Symbols: ATGRX4, GRX4 | GRX4 (GLUTAREDOXIN 4); metal ion binding | chr3:5308134-5309383 REVERSE 77

| Symbols: | dicarboxylate/tricarboxylate carrier (DTC) | chr5:6679591-6681845 REVERSE 73

275

| Symbols: | succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, pu

218

| Symbols: RCA | RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carbox

119

| Symbols: IDH1 | IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the C

200

| Symbols: ATHXK1, GIN2, HXK1 | HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase | chr4:143523

163

| Symbols: ASP1 | ASP1 (ASPARTATE AMINOTRANSFERASE 1); L-aspartate:2-oxoglutarate aminotransferase | chr2:13179012

34

| Symbols: TOM6 | TOM6 (translocase of the outer mitochondrial membrane 6) | chr1:18286738-18286902 REVERSE

83

| Symbols: | ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) | chr5:1537750

83

| Symbols: | ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) | chr5:1538120

83

| Symbols: | ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) | chr5:1538435

374

| Symbols: PMDH2 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase | chr5:2993645-2995169 R

362

| Symbols: CSY2 | CSY2 (citrate synthase 2); citrate (SI)-synthase | chr3:21724564-21727458 REVERSE

147

| Symbols: ATHXK2, HXK2 | HXK2 (HEXOKINASE 2); ATP binding / fructokinase/ glucokinase/ hexokinase | chr2:8571949-8573

| Symbols: | ATP synthase gamma chain, mitochondrial (ATPC) | chr2:14018978-14021047 REVERSE 299

213

| Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding | chr1:27915346-27916857 F

374

| Symbols: PMDH2 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase | chr5:2993691-2995169 R

89

| Symbols: VDAC3, ATVDAC3 | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3); voltage-gated anion channel | chr5:48896

anion

| Symbols: VDAC1, ATVDAC1 | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1); voltage-gated 104 channel | chr3:85754

374

| Symbols: PMDH2 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase | chr5:2993645-2995551 R

| Symbols: | unknown protein | chr2:19110687-19111681 REVERSE 46

| Symbols: | 40S ribosomal protein S30 (RPS30A) | chr2:8515037-8515806 FORWARD 35

220

| Symbols: APFI, GAMMA CA2 | GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase | chr1:17321384-1

| Symbols: | ribosomal protein L33 family protein | chr3:1914940-1915116 FORWARD 95

| Symbols: ATPHB4 | ATPHB4 (PROHIBITIN 4) | chr3:10076904-10078051 FORWARD 88

37

| Symbols: | cytochrome c oxidase subunit Vc family protein / COX5C family protein | chr2:19441694-19441888 FORWARD

374

| Symbols: PMDH2 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase | chr5:2993691-2995551 R

| Symbols: | binding / catalytic/ coenzyme binding | chr5:3390822-3392947 REVERSE 226

274

| Symbols: APX3 | APX3 (ASCORBATE PEROXIDASE 3); L-ascorbate peroxidase | chr4:16665007-16667541 REVERSE

| Symbols: ATPHB1 | ATPHB1 (PROHIBITIN 1) | chr4:14084970-14086372 REVERSE 233

173

| Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting

79

| Symbols: OEP16, ATOEP16-L, ATOEP16-1 | ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1); P-P-bond-hydrolysis-driv

27

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endome

222

| Symbols: SHM2 | SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal

53

| Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-binding protein 6); RNA binding / nucleic acid binding / nucleotide binding |

169

| Symbols: ATPUMP1, UCP, PUMP1, ATUCP1, UCP1 | PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1); binding / o

211

| Symbols: ALDH2B4, ALDH2, ALDH2A | ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4); 3-chloroallyl aldehyde dehydrogenase/

| Symbols: HPR | HPR; glycerate dehydrogenase/ poly(U) binding | chr1:25493418-25495720 FORWARD 139

| Symbols: | unknown protein | chr5:8188622-8189087 FORWARD 29

271

| Symbols: | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid

154

| Symbols: ATRAB8D, ATRABE1B | ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B); GTP binding / GTPase/ translation

| Symbols: SDH1-1 | SDH1-1; ATP binding / succinate dehydrogenase | chr5:26653776-26657224 233 FORWARD

| Symbols: | DNA-binding protein, putative | chr3:5275568-5277658 REVERSE 203

95

| Symbols: IAR4 | IAR4; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehy

| Symbols: FRO1 | FRO1 (FROSTBITE1); NADH dehydrogenase (ubiquinone) | chr5:26958073-26959356 FORWARD43

| Symbols: PEX11D | PEX11D | chr2:18839865-18841102 FORWARD 83

| Symbols: | ribosomal protein S7 family protein | chr2:3351340-3351786 REVERSE 37

| Symbols: | RNA recognition motif (RRM)-containing protein | chr5:22171332-22172656 FORWARD 73

| Symbols: | NADH-cytochrome b5 reductase, putative | chr5:6782708-6786360 FORWARD 105

| Symbols: | band 7 family protein | chr4:13766984-13769832 REVERSE 198

| Symbols: | unknown protein | chr2:13412060-13413002 FORWARD 66

33

| Symbols: TOM7-2 | TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2); P-P-bond-hydrolysis-driven protein

113

| Symbols: | mitochondrial processing peptidase alpha subunit, putative | chr1:19323692-19326771 REVERSE

| Symbols: | ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial39 hinge protein, putative | c

147

| Symbols: ATHXK2, HXK2 | HXK2 (HEXOKINASE 2); ATP binding / fructokinase/ glucokinase/ hexokinase | chr2:8570818-8573

198

| Symbols: mtHsc70-1 | mtHsc70-1 (mitochondrial heat shock protein 70-1); ATP binding | chr4:17825368-17828099 REVERS

71

| Symbols: | glycine cleavage system H protein, mitochondrial, putative | chr1:11739479-11740246 REVERSE

| Symbols: GDCH | GDCH; glycine dehydrogenase (decarboxylating) | chr2:14891239-14892050 FORWARD 71

| Symbols: | Expressed protein | chr2:6034472-6034708 FORWARD 76

| Symbols: CSY3 | CSY3 (citrate synthase 3); citrate (SI)-synthase | chr2:17803132-17805991 REVERSE349

148

| Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / bind

347

| Symbols: | 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglut

347

| Symbols: AtGLDP2 | AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2); ATP binding / glycine dehydrogenase

| Symbols: | unknown protein | chr4:16169167-16169406 FORWARD 29

79

| Symbols: TIM8 | TIM8; P-P-bond-hydrolysis-driven protein transmembrane transporter | chr5:20675875-20676505 REVERS

200

| Symbols: ADNT1 | ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1); ADP transmembrane transporter/ AMP transmembran

| Symbols: | unknown protein | chr5:22372737-22372967 FORWARD 34

| Symbols: | 2-oxoacid dehydrogenase family protein | chr4:13520127-13522055 REVERSE 73

| Symbols: | aconitate hydratase/ copper ion binding | chr4:13543077-13548427 FORWARD 393

| Symbols: | ribosomal protein L10 family protein | chr3:3937464-3937979 REVERSE 85

| Symbols: | 50S ribosomal protein-related | chr4:12315016-12316659 REVERSE 113

| Symbols: | unknown protein | chr1:17331383-17331726 FORWARD 52

152

| Symbols: | isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative | chr3:3008753-3011070 FORWA

43

| Symbols: TIM13 | TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13); P-P-bond-hydrolysis-driven prot

| Symbols: SDH3-1 | SDH3-1; succinate dehydrogenase | chr5:2979777-2980527 FORWARD 136

| Symbols: BOU | BOU (A BOUT DE SOUFFLE); binding / transporter | chr5:18988779-18989810 REVERSE 203

198

| Symbols: MTHSC70-2, HSC70-5 | MTHSC70-2 (MITOCHONDRIAL HSP70 2); ATP binding | chr5:2975721-2978508 FORWARD

197

| Symbols: AGT2 | AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2); alanine-glyoxylate transaminase/ catalytic/ pyridox

148

| Symbols: GAPA, GAPA-1 | GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosph

75

| Symbols: TOM22-V, TOM9-2, ATTOM22-V | TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V); P-P-bond-hydrolysis-dr

180

| Symbols: CI51 | CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NADH binding / N

98

| Symbols: MPPalpha | MPPalpha (mitochondrial processing peptidase alpha subunit); catalytic/ metal ion binding / metalloe

62

| Symbols: PRXIIF, ATPRXIIF | PRXIIF (PEROXIREDOXIN IIF); antioxidant/ peroxidase | chr3:1826311-1827809 REVERSE

| Symbols: | complex 1 family protein / LVR family protein | chr2:16570070-16570342 FORWARD 49

| Symbols: NQR | NQR (NADPH:QUINONE OXIDOREDUCTASE); FMN reductase | chr3:10350807-10351938 REVERSE100

| Symbols: | unknown protein | chr5:25280151-25281463 REVERSE 156

| Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD 66

170

| Symbols: AGT, AGT1 | AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxyla

121

| Symbols: MFP2, ATMFP2 | MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase

| Symbols: | unknown protein | chr4:15400803-15401105 REVERSE 28

| Symbols: | cytochrome c1, putative | chr3:10056144-10058370 REVERSE 72

112

| Symbols: TOM40 | TOM40; P-P-bond-hydrolysis-driven protein transmembrane transporter/ voltage-gated anion channel |

| Symbols: CPN10 | CPN10 (CHAPERONIN 10); chaperone binding | chr1:5165930-5166654 REVERSE 46

| Symbols: PSAD-1 | PSAD-1 (photosystem I subunit D-1) | chr4:1229247-1229873 REVERSE 37

| Symbols: | unknown protein | chr2:11167496-11168373 REVERSE 29

| Symbols: | tic20 protein-related | chr2:19594331-19594957 REVERSE 64

93

| Symbols: ATRPS5A, AML1 | ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome | chr3:3778175-377935

48

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_

| Symbols: | unknown protein | chr5:5572640-5572939 FORWARD 22

| Symbols: | electron carrier/ protein disulfide oxidoreductase | chr5:16846247-16847909 FORWARD 55

146

| Symbols: | succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, p

98

| Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase | chr4:12884649-128865

244

| Symbols: HSP60-3A | HSP60-3A (HEAT SHOCK PROTEIN 60-3A); ATP binding / protein binding | chr3:4561704-4565133 REV

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD 36

| Symbols: SDH3-2 | SDH3-2; succinate dehydrogenase | chr4:15556732-15558041 REVERSE 136

190

| Symbols: | succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, p

| Symbols: | elongation factor Tu, putative / EF-Tu, putative | chr4:1295751-1298354 REVERSE 84

152

| Symbols: PKT3, PED1, KAT2 | PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3); acetyl-CoA C-acyltransferase | chr2:1404

127

| Symbols: ASP3, YLS4 | ASP3 (ASPARTATE AMINOTRANSFERASE 3); L-aspartate:2-oxoglutarate aminotransferase | chr5:3685

| Symbols: | unknown protein | chr5:16711437-16711742 FORWARD 39

| Symbols: | 2-oxoacid dehydrogenase family protein | chr4:13520127-13522889 REVERSE 73

| Symbols: | NADH-ubiquinone oxidoreductase B18 subunit, putative | chr2:490024-490335 FORWARD 36

112

| Symbols: | oxidoreductase, zinc-binding dehydrogenase family protein | chr3:20933029-20934425 REVERSE

| Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:708479-709513 REVERSE 39

| Symbols: | unknown protein | chr5:6787246-6788000 REVERSE 32

63

| Symbols: NDPK3 | NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3); ATP binding / nucleoside diphosphate kinase | chr4:6732

| Symbols: | unknown protein | chr4:2907176-2908297 FORWARD 35

| Symbols: | NADH-ubiquinone oxidoreductase-related | chr3:6323203-6323761 FORWARD 34

| Symbols: | ATP binding | chr3:2479611-2483970 FORWARD 183

138

| Symbols: ATTIM17-2, TIM17 | ATTIM17-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transpo

64

| Symbols: | hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein | chr3:17725410-17727

93

| Symbols: IBR10, ATECI2, ECI2, ECHIB, PEC12 | IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10); catalytic/ dodecenoyl-CoA del

386

| Symbols: AIM1 | AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase | chr4:14297312-14302016 REVERS

| Symbols: EMB2752 | EMB2752 (EMBRYO DEFECTIVE 2752) | chr4:14534495-14535171 REVERSE 33

| Symbols: | ribosomal protein L30 family protein | chr5:22381370-22381787 FORWARD 102

79

| Symbols: | isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative | chr4:16908584-16909973 FORW

132

| Symbols: FUM1 | FUM1 (FUMARASE 1); catalytic/ fumarate hydratase | chr2:19498614-19502020 FORWARD

| Symbols: | unknown protein | chr2:17625251-17625595 FORWARD 26

| Symbols: ATWHY2 | ATWHY2 (A. THALIANA WHIRLY 2); DNA binding | chr1:26861849-26863391 59 REVERSE

| Symbols: | NADH-ubiquinone oxidoreductase-related | chr1:18177696-18178269 REVERSE 45

186

| Symbols: AOAT2, GGT2 | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); L-alanine:2-oxoglutarate aminotran

| Symbols: LHCA1 | LHCA1; chlorophyll binding | chr3:20339706-20340922 REVERSE 67

20

| Symbols: SSR16 | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16); structural constituent of ribosome | chr4:16535084-16

115

| Symbols: ATPB | chloroplast-encoded gene for beta subunit of ATP synthase | chrC:52660-54156 REVERSE

138

| Symbols: ADK1 | ADK1 (ADENYLATE KINASE 1); ATP binding / adenylate kinase/ nucleobase, nucleoside, nucleotide kinase/

117

| Symbols: EMB1467 | EMB1467 (embryo defective 1467); NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ elect

| Symbols: ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL) | chr3:19396689-19397866 FORWARD 51

112

| Symbols: GAMMA CA3 | GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3); carbonate dehydratase | chr5:26550016-26551

75

| Symbols: GAMMA CAL1 | GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1); carbonate dehydratase | chr5:25424054

75

| Symbols: GAMMA CAL2 | GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2); transferase | chr3:18035107-18036773 F

147

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitocho

41

| Symbols: ADF3 | ADF3 (ACTIN DEPOLYMERIZING FACTOR 3); actin binding | chr5:24120382-24121628 FORWARD

| Symbols: | NADH-ubiquinone oxidoreductase 24 kDa subunit, putative | chr4:1134586-1136906 47 FORWARD

36

| Symbols: | INVOLVED IN: protein complex assembly; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant stru

39

| Symbols: ROC4 | peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (RO

| Symbols: | peptide methionine sulfoxide reductase, putative | chr4:12898802-12899998 REVERSE 50

| Symbols: | haloacid dehalogenase-like hydrolase family protein | chr5:18045588-18046519 REVERSE 49

| Symbols: | fumarate hydratase, putative / fumarase, putative | chr5:20729999-20733636 FORWARD 121

59

| Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding | chr5:24560870-24562152 F

146

| Symbols: GDH1 | GDH1 (GLUTAMATE DEHYDROGENASE 1); ATP binding / glutamate dehydrogenase [NAD(P)+]/ oxidoreduc

| Symbols: ACX3, ATACX3 | ACX3 (ACYL-COA OXIDASE 3); acyl-CoA oxidase | chr1:1922423-1926002 FORWARD 66

39

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 pla

| Symbols: ATPE | ATPase epsilon subunit | chrC:52265-52663 REVERSE 91

| Symbols: | embryo-abundant protein-related | chr2:17251981-17252886 FORWARD 42

| Symbols: | unknown protein | chr4:8152499-8153091 REVERSE 34

| Symbols: | unknown protein | chr5:25913487-25913879 FORWARD 42

| Symbols: RPS11 | 30S chloroplast ribosomal protein S11 | chrC:78960-79376 REVERSE 53

100

| Symbols: SDH2-2 | SDH2-2; electron carrier/ succinate dehydrogenase | chr5:16281462-16283296 FORWARD

236

| Symbols: MCCB | MCCB (3-METHYLCROTONYL-COA CARBOXYLASE); biotin carboxylase/ methylcrotonoyl-CoA carboxylase |

| Symbols: | ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD 146

| Symbols: | cytidylyltransferase family | chr1:19745330-19747133 REVERSE 41

61

| Symbols: GAPB | GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehy

| Symbols: | 40S ribosomal protein S23 (RPS23B) | chr5:693280-694396 REVERSE 45

80

| Symbols: CLPP4, NCLPP4 | CLPP4 (CLP PROTEASE P4); serine-type endopeptidase | chr5:18396351-18397586 FORWARD

| Symbols: RPS8 | chloroplast 30S ribosomal protein S8 | chrC:80068-80472 REVERSE 31

41

| Symbols: ADF3 | ADF3 (ACTIN DEPOLYMERIZING FACTOR 3); actin binding | chr5:24120382-24121628 FORWARD

| Symbols: SOX, AT-SO, AtSO | SOX (SULFITE OXIDASE); sulfite oxidase | chr3:314919-316641 REVERSE 65

| Symbols: | 2-oxoacid dehydrogenase family protein | chr5:22347637-22350409 FORWARD 75

70

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mit

| Symbols: | elongation factor 1-alpha / EF-1-alpha | chr1:2455559-2457001 FORWARD 67

| Symbols: MEE4 | MEE4 (maternal effect embryo arrest 4) | chr1:1289921-1290986 REVERSE 60

101

| Symbols: | 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase | chr1:864082

| Symbols: | 40S ribosomal protein S23 (RPS23A) | chr3:2969197-2970291 REVERSE 45

| Symbols: MDAR6 | monodehydroascorbate reductase, putative | chr1:23730206-23733534 FORWARD 179

92

| Symbols: SDP6 | SDP6 (SUGAR-DEPENDENT 6); glycerol-3-phosphate dehydrogenase | chr3:3216502-3219027 FORWARD

28

| Symbols: RPS15 | RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome | chr1:1141852-114296

| Symbols: | thioesterase family protein | chr1:17855024-17855577 REVERSE 35

| Symbols: PSAG | PSAG (PHOTOSYSTEM I SUBUNIT G) | chr1:20802874-20803356 REVERSE 50

168

| Symbols: | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative | chr

| Symbols: | unknown protein | chr1:27798519-27799522 REVERSE 75

| Symbols: | uricase / urate oxidase / nodulin 35, putative | chr2:11164956-11166968 FORWARD 31

of

| Symbols: MRPL11 | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11); structural constituent26 ribosome | chr4:16855

| Symbols: | 40S ribosomal protein S15 (RPS15E) | chr5:17531302-17532370 FORWARD 28

66

| Symbols: CHY1 | CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1); 3-hydroxyisobutyryl-CoA hydrolase | chr5:263771

| Symbols: | fumarate hydratase, putative / fumarase, putative | chr5:20729687-20733636 FORWARD 121

106

| Symbols: ALDH6B2 | ALDH6B2; 3-chloroallyl aldehyde dehydrogenase/ methylmalonate-semialdehyde dehydrogenase (acy

| Symbols: | cinnamoyl-CoA reductase family | chr2:14226873-14228498 FORWARD 46

27

| Symbols: RPS7.1, RPS7 | encodes a chloroplast ribosomal protein S7, a constituent of the small subunit of the ribosomal com

66

| Symbols: CHY1 | CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1); 3-hydroxyisobutyryl-CoA hydrolase | chr5:263769

| Symbols: | fumarate hydratase, putative / fumarase, putative | chr5:20729687-20733476 FORWARD 121

| Symbols: | unknown protein | chr2:9953067-9955018 REVERSE 136

92

| Symbols: | hydrogen ion transmembrane transporter/ hydrolase, acting on acid anhydrides, catalyzing transmembrane mo

| Symbols: CAT1 | CAT1 (CATALASE 1); catalase | chr1:7146812-7149609 FORWARD 173

| Symbols: | 60S ribosomal protein L21 (RPL21E) | chr1:21355567-21356364 FORWARD 36

| Symbols: EMB1793 | EMB1793 (EMBRYO DEFECTIVE 1793); catalytic | chr1:28543367-28543840 51 REVERSE

138

| Symbols: PMDH1 | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); L-malate dehydrogenase/ binding / catalytic

| Symbols: | outer membrane OMP85 family protein | chr3:3467801-3469815 FORWARD 117

93

| Symbols: ALDH10A9 | ALDH10A9; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase | chr3:17786290-17789918 REVE

239

| Symbols: ACX1, ATACX1 | ACX1 (ACYL-COA OXIDASE 1); acyl-CoA oxidase | chr4:9424930-9428689 REVERSE

| Symbols: ROC5, ATCYP1 | ROC5 (ROTAMASE CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase 36 | chr4:16614451-1661496

| Symbols: | ribosomal protein L12 family protein | chr4:17695543-17696046 FORWARD 22

30

| Symbols: NDHJ | Encodes NADH dehydrogenase subunit J. Its transcription is increased upon sulfur depletion. | chrC:48677

89

| Symbols: ACCD | Encodes the carboxytransferase beta subunit of the Acetyl-CoA carboxylase (ACCase) complex in plastids.

51

| Symbols: ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter | chr3:1939

122

| Symbols: | 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglut

| Symbols: | oxidoreductase, zinc-binding dehydrogenase family protein | chr3:5076847-5078870 69 FORWARD

46

| Symbols: ATGPX2 | ATGPX2 (GLUTATHIONE PEROXIDASE 2); glutathione peroxidase | chr2:13438211-13439775 REVERSE

| Symbols: | transketolase, putative | chr3:22454004-22456824 FORWARD 119

| Symbols: | ribosomal protein L12 family protein | chr4:17203718-17204257 REVERSE 79

99

| Symbols: IMPL2 | IMPL2 (MYO-INOSITOL MONOPHOSPHATASE LIKE 2); 3~(2~),5~-bisphosphate nucleotidase/ L-galactose-1

| Symbols: | outer membrane OMP85 family protein | chr5:1632912-1635104 FORWARD 102

33

| Symbols: RPL16 | encodes a mitochondrial ribosomal protein L16, which is a constituent of the large ribosomal subunit | ch

102

| Symbols: CLPX | CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:21644

43

| Symbols: ATTIM23-2 | ATTIM23-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter | c

120

| Symbols: MOD1, ENR1 | MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ enoyl-[acyl-carrier-prote

68

| Symbols: EMB1276, ACAT2 | ACAT2 (ACETOACETYL-COA THIOLASE 2); acetyl-CoA C-acetyltransferase/ catalytic | chr5:1955

75

| Symbols: | ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit,

| Symbols: SOX, AT-SO, AtSO | SOX (SULFITE OXIDASE); sulfite oxidase | chr3:314919-317274 REVERSE 65

106

| Symbols: ALDH6B2 | ALDH6B2; 3-chloroallyl aldehyde dehydrogenase/ methylmalonate-semialdehyde dehydrogenase (acy

| Symbols: | phosphoglycerate kinase, putative | chr1:21028622-21030454 FORWARD 126

| Symbols: | ribosomal protein S3 | chrM:25482-28733 REVERSE 48

40

| Symbols: ATTIL, TIL | TIL (TEMPERATURE-INDUCED LIPOCALIN); binding / transporter | chr5:23500512-23501156 REVERSE

| Symbols: | band 7 family protein | chr5:21954035-21956500 REVERSE 35

| Symbols: | ATP synthase delta~ chain, mitochondrial | chr5:19090384-19092034 FORWARD 49

38

| Symbols: TOM20-4 | TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4); P-P-bond-hydrolysis-driven protein transmem

| Symbols: PMH2 | PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent 156 helicase/ helicase/ nucleic a

| Symbols: | 60S ribosomal protein L5 (RPL5) | chr2:3448402-3448959 FORWARD 43

92

| Symbols: CRB, CSP41B | CRB (CHLOROPLAST RNA BINDING); binding / catalytic/ coenzyme binding | chr1:3015473-3018035

| Symbols: | cytochrome b (MTCYB) (COB) (CYTB) | chr2:3450863-3452044 FORWARD 72

| Symbols: ATO1 | ATO1 (Arabidopsis thioredoxin O1) | chr2:14754398-14755888 FORWARD 38

| Symbols: | copper amine oxidase, putative | chr2:17691600-17695526 REVERSE 77

39

| Symbols: | FAD binding / acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group o

| Symbols: | unknown protein | chr3:7534824-7536293 REVERSE 48

| Symbols: PKP1, PKP-ALPHA | PKP-ALPHA; pyruvate kinase | chr3:8139369-8141771 FORWARD 58

| Symbols: | fructose-bisphosphate aldolase, putative | chr4:18163714-18165659 REVERSE 66

70

| Symbols: ASP2, AAT2 | ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate:2-oxoglutarate aminotransferase | chr5:659

102

| Symbols: | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:20255243-20259

| Symbols: MDAR6 | monodehydroascorbate reductase, putative | chr1:23730206-23732917 FORWARD 138

41

| Symbols: PETC, PGR1 | PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C); electron transporter, transferring electrons from c

48

| Symbols: OASC, ATCS-C | OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase | chr3:22072

54

| Symbols: MTSSB | MTSSB (mitochondrially targeted single-stranded DNA binding protein); single-stranded DNA binding | ch

30

| Symbols: TOM20-3 | TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3); P-P-bond-hydrolysis-driven prot

| Symbols: SDH1-2 | SDH1-2; succinate dehydrogenase | chr2:7997510-8000801 REVERSE 149

| Symbols: | DNA binding | chr1:5318307-5320422 FORWARD 87

| Symbols: | unknown protein | chr5:7807319-7808988 FORWARD 38

| Symbols: | short-chain dehydrogenase/reductase (SDR) family protein | chr3:328075-328833 REVERSE 39

154

| Symbols: NAD5C, NAD5.3, NAD5 | Mitochondrial NADH dehydrogenase subunit 5. The gene is trans-spliced from the three d

| Symbols: | transaldolase, putative | chr5:4302080-4304212 REVERSE 78

| Symbols: | ribosomal protein L28 family protein | chr4:15259773-15260847 REVERSE 33

| Symbols: | phenylalanyl-tRNA synthetase class IIc family protein | chr3:21529988-21532386 REVERSE 61

30

| Symbols: TOM20-2 | TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2); P-P-bond-hydrolysis-driven protein transmembra

102

| Symbols: | ATP-dependent Clp protease ATP-binding subunit ClpX, putative | chr1:12092111-12095789 FORWARD

36

| Symbols: ICDH | ICDH (ISOCITRATE DEHYDROGENASE); isocitrate dehydrogenase (NADP+)/ oxidoreductase, acting on the CH

94

| Symbols: ATNADP-ME4 | ATNADP-ME4 (NADP-malic enzyme 4); malate dehydrogenase (oxaloacetate-decarboxylating) (NA

22

| Symbols: ATGSTF10, ERD13, ATGSTF4, GSTF10 | GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10); copper ion bindi

138

| Symbols: ACX4, ATSCX, ATG6 | ACX4 (ACYL-COA OXIDASE 4); acyl-CoA oxidase/ oxidoreductase | chr3:19225653-19229008

| Symbols: | unknown protein | chr5:23559558-23560372 FORWARD 26

| Symbols: MDAR6 | monodehydroascorbate reductase, putative | chr1:23730206-23733534 FORWARD 138

| Symbols: | phosphoglycerate kinase, putative | chr1:21028403-21030454 FORWARD 126

41

| Symbols: PETC, PGR1 | PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C); electron transporter, transferring electrons from c

61

| Symbols: TGG1, BGLU38 | TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / th

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr4:16983638-16986681 FORWARD 144

| Symbols: | nucleoside diphosphate kinase 4 (NDK4) | chr4:12424505-12426318 FORWARD 52

| Symbols: PEX11E | PEX11E | chr3:22604873-22606159 REVERSE 46

159

| Symbols: CSY5 | CSY5 (citrate synthase 5); citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted

126

| Symbols: PGK1 | PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase | chr3:4061127-4063140 REVERSE

| Symbols: | thioesterase family protein | chr2:13089604-13091538 REVERSE 38

| Symbols: | metal ion binding | chr2:7133704-7135483 REVERSE 64

46

| Symbols: | NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) | chr1:29725138-29726933 REVERSE

| Symbols: | short-chain dehydrogenase/reductase (SDR) family protein | chr1:3381733-3383874 53 REVERSE

as

| Symbols: | oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP22 acceptor | chr1:117410

68

| Symbols: ATGPX1 | ATGPX1 (GLUTATHIONE PEROXIDASE 1); glutathione peroxidase | chr2:10668134-10669828 FORWARD

| Symbols: | enoyl-CoA hydratase, putative | chr4:9454931-9456309 REVERSE 30

| Symbols: | AFG1-like ATPase family protein | chr4:13946009-13948462 FORWARD 69

| Symbols: | nucleotide binding | chr5:616517-618267 FORWARD 69

| Symbols: | ribosomal protein L10 family protein | chr5:4341294-4341956 FORWARD 38

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:5213290-5215296 FORWARD 84

| Symbols: | unknown protein | chr5:17544074-17545354 FORWARD 23

| Symbols: | VQ motif-containing protein | chr5:18979236-18979949 FORWARD 43

| Symbols: | integral membrane HPP family protein | chr5:25191969-25194845 FORWARD 35

33

| Symbols: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue

53

| Symbols: RML1, PAD2, GSH1, CAD2 | GSH1 (GLUTAMATE-CYSTEINE LIGASE); glutamate-cysteine ligase | chr4:12103779-121

44

| Symbols: | INVOLVED IN: translation; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ribosomal protein L25/

| Symbols: | 6-phosphogluconate dehydrogenase family protein | chr5:16665647-16667110 REVERSE 46

29

| Symbols: CLPP2, NCLPP7 | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase | chr5:7783811-778

65

| Symbols: | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative | chr5:4703533-4706627 REVER

| Symbols: | AFG1-like ATPase family protein | chr4:14899226-14901883 REVERSE 58

| Symbols: | mitochondrial elongation factor, putative | chr1:17172507-17176683 REVERSE 42

| Symbols: LIP2 | LIP2 (LIPOYLTRANSFERASE 2); lipoyltransferase | chr1:1292541-1293248 FORWARD 35

| Symbols: DECOY | DECOY (DECOY) | chr1:5014948-5016501 REVERSE 30

61

| Symbols: HXK3 | HXK3 (HEXOKINASE 3); ATP binding / fructokinase/ glucokinase/ hexokinase | chr1:17616243-17618859 RE

| Symbols: | unknown protein | chr2:15040735-15041976 FORWARD 53

| Symbols: | peroxisomal membrane 22 kDa family protein | chr3:8966675-8968530 REVERSE 35

100

| Symbols: LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding

| Symbols: LHCA2 | LHCA2; chlorophyll binding | chr3:22745736-22747032 FORWARD 76

40

| Symbols: IBR1, SDRA | IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1); binding / catalytic/ oxidoreductase | chr4:2816462-281

| Symbols: | adenylate kinase family protein | chr4:12939068-12940723 REVERSE 42

25

| Symbols: ATPA | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which ca

| Symbols: RPS2 | Chloroplast ribosomal protein S2 | chrC:15013-15723 REVERSE 55

| Symbols: | fructose-bisphosphate aldolase, putative | chr2:15296929-15297732 REVERSE 62

| Symbols: | cytochrome c1, putative | chr5:16340670-16342327 FORWARD 45

| Symbols: CR88 | CR88; ATP binding | chr2:1281983-1285909 FORWARD 75

| Symbols: COX2 | cytochrome c oxidase subunit 2 | chrM:40502-42628 REVERSE 82

34

| Symbols: AOS, CYP74A, DDE2 | AOS (ALLENE OXIDE SYNTHASE); allene oxide synthase/ hydro-lyase/ oxygen binding | chr5:1

63

| Symbols: GAMMA CA1 | GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1); carbonate dehydratase | chr1:6774937-677709

| Symbols: | 30S ribosomal protein S18 family | chr1:2215320-2216668 FORWARD 40

36

| Symbols: ATWHY1, PTAC1, WHY1 | WHY1 (WHIRLY 1); DNA binding / telomeric DNA binding | chr1:4929352-4930810 REVE

| Symbols: LHCA3 | LHCA3; chlorophyll binding | chr1:22700152-22701149 FORWARD 31

35

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxiso

| Symbols: | ribosomal protein L5 family protein | chr4:544166-545480 REVERSE 35

70

| Symbols: | 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative | chr4:2664451-2666547 FORWARD

42

| Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding | chr4:6408200-640949

32

| Symbols: ECHIA, E-COAH-2 | ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A); catalytic | chr4:9176864-9177978 REVERSE

57

| Symbols: DHS1 | DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1); 3-deoxy-7-phosphoheptulonat

24

| Symbols: ATOFP13, OFP13 | OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13) | chr5:1399685-1400467 FORWA

| Symbols: | dehydrogenase-related | chr5:5193207-5195202 FORWARD 87

54

| Symbols: RPL2.1 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex |

| Symbols: | unknown protein | chr5:22525981-22527479 FORWARD 44

| Symbols: ALDH12A1, ATP5CDH, P5CDH | ALDH12A1; 1-pyrroline-5-carboxylate dehydrogenase/101 3-chloroallyl aldehyde dehy

| Symbols: ATPHB7 | ATPHB7 (PROHIBITIN 7) | chr5:17762491-17763629 FORWARD 122

103

| Symbols: NDB1 | NDB1 (NAD(P)H dehydrogenase B1); NADH dehydrogenase/ disulfide oxidoreductase | chr4:13993078-13

117

| Symbols: NDB2 | NDB2 (NAD(P)H dehydrogenase B2); FAD binding / disulfide oxidoreductase/ oxidoreductase | chr4:25727

59

| Symbols: SDH2-1 | SDH2-1; electron carrier/ succinate dehydrogenase | chr3:10131209-10132673 REVERSE

56

| Symbols: CPN60A, CH-CPN60A, SLP | CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding | chr2:11926603-119

| Symbols: NIR1, NIR, ATHNIR | NIR1 (NITRITE REDUCTASE 1); ferredoxin-nitrate reductase/ nitrite 52reductase (NO-forming) | c

100

| Symbols: CLPP5, NCLPP5, NCLPP1 | CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase | chr1:538000

39

| Symbols: ADK, ATPADK1 | ADK (ADENOSINE KINASE); adenylate kinase/ nucleotide kinase | chr2:15641991-15643318 FORW

| Symbols: | lipase class 3 family protein | chr2:17672425-17674854 REVERSE 98

| Symbols: | glycoside hydrolase family 19 protein | chr2:18088058-18089184 REVERSE 86

| Symbols: | chitinase, putative | chr2:18093954-18095025 REVERSE 86

45

| Symbols: SDRB, DECR | SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B); binding / catalytic/ oxidoreductase | chr3:40

| Symbols: | 3-hydroxybutyryl-CoA dehydrogenase, putative | chr3:5145054-5146613 FORWARD 58

191

| Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHL

| Symbols: | chlorophyll A-B binding protein CP29 (LHCB4) | chr5:209084-210243 FORWARD 50

34

| Symbols: NAD1C, NAD1 | Encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from three precur

| Symbols: | unknown protein | chr4:18417755-18421633 FORWARD 49

| Symbols: | malate oxidoreductase, putative | chr4:242817-246522 REVERSE 140

| Symbols: RPL3P | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID); structural constituent of ribosome |47 chr3:5978059-5979572 RE

| Symbols: | malate oxidoreductase, putative | chr2:5650089-5655103 FORWARD 150

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:9151816-9154407 FORWARD 52

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic35 process; LOCATED IN: mito

| Symbols: | oxidoreductase, acting on NADH or NADPH | chr1:28253890-28255173 FORWARD 48

| Symbols: | DNA-binding protein, putative | chr1:30181265-30183331 FORWARD 93

| Symbols: | ribosomal protein L4 family protein | chr2:8659384-8661227 FORWARD 54

| Symbols: PSB29, THF1 | PSB29 | chr2:8987783-8989185 FORWARD 43

44

| Symbols: IPP2, IPIAT1, IDI2 | IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2); isope

| Symbols: | short-chain dehydrogenase/reductase (SDR) family protein | chr4:6146770-6148698 25 FORWARD

44

| Symbols: IPP1 | IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1); isopentenyl-diphosphate delta-isomerase | chr5:537176

32

| Symbols: ATNIFS1, NIFS1, NFS1, ATNFS1 | NFS1; ATP binding / cysteine desulfurase/ transaminase | chr5:26296733-262977

| Symbols: | mitochondrial substrate carrier family protein | chr5:24831843-24833002 REVERSE 32

| Symbols: | fructose-bisphosphate aldolase, putative | chr2:15296929-15298387 REVERSE 62

28

| Symbols: CA1 | CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding | chr3:195173-197873 REVERSE

of

| Symbols: RPL2 | encodes a mitochondrial ribosomal protein L2, a constituent of the large subunit31 the ribosomal complex

| Symbols: | ATP12 protein-related | chr5:16283650-16285161 REVERSE 54

63

| Symbols: LON_ARA_ARA, LON1 | LON1 (LON PROTEASE 1); ATP binding / ATP-dependent peptidase/ serine-type peptidase

54

| Symbols: CLS | CLS (CARDIOLIPIN SYNTHASE); cardiolipin synthase/ phosphatidyltransferase | chr4:2461904-2464004 REVE

| Symbols: | mitochondrial phosphate transporter, putative | chr3:18114759-18116420 REVERSE 38

| Symbols: AOX1C | AOX1C; alternative oxidase | chr3:10229289-10230595 REVERSE 36

| Symbols: AOX1B | AOX1B; alternative oxidase | chr3:7904156-7905384 FORWARD 36

43

| Symbols: | ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) | chr3:3173805-3179156 REVERSE

| Symbols: | peroxidase, putative | chr1:1521202-1522447 FORWARD 40

51

| Symbols: GLX2-4 | GLX2-4 (glyoxalase 2-4); hydrolase/ hydroxyacylglutathione hydrolase/ zinc ion binding | chr1:1858034-1

25

| Symbols: TGD1 | TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1); lipid transporter | chr1:6846812-6847954 FORWARD

| Symbols: | esterase/lipase/thioesterase family protein | chr1:19651378-19652576 FORWARD 32

99

| Symbols: ACX5 | ACX5 (ACYL-COA OXIDASE 5); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ o

| Symbols: CP33, PDE322 | CP33; RNA binding | chr3:19421619-19422855 FORWARD 33

| Symbols: | fructose-bisphosphate aldolase, putative | chr3:19627383-19628874 REVERSE 62

45

| Symbols: APG1, VTE3, IEP37, E37 | APG1 (ALBINO OR PALE GREEN MUTANT 1); 2-methyl-6-phytyl-1,4-benzoquinone methy

| Symbols: | unknown protein | chr5:2763914-2765431 FORWARD 38

| Symbols: emb2024 | emb2024 (embryo defective 2024); 6-phosphogluconolactonase/ catalytic |33 chr5:8330532-8331784 R

| Symbols: | histidinol-phosphate aminotransferase, putative | chr1:27067333-27068999 FORWARD 22

| Symbols: MCCA | MCCA; methylcrotonoyl-CoA carboxylase | chr1:739715-743819 FORWARD 66

| Symbols: CCB382 | cytochrome c biogenesis orf382 | chrM:231894-233042 REVERSE 43

43

| Symbols: | DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative | chr5:1

| Symbols: | translation elongation factor Ts (EF-Ts), putative | chr4:6778066-6779934 FORWARD93

48

| Symbols: MDH | MDH (MALATE DEHYDROGENASE); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ o

51

| Symbols: | oxidoreductase, zinc-binding dehydrogenase family protein | chr3:16805753-16807774 REVERSE

36

| Symbols: AOX1A, ATAOX1A | AOX1A (ALTERNATIVE OXIDASE 1A); alternative oxidase | chr3:7906890-7908416 FORWARD

61

| Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST A

48

| Symbols: ATSERAT2;2, SAT-1, SAT-A, SAT3, SAT-M | ATSERAT2;2 (SERINE ACETYLTRANSFERASE 2;2); serine O-acetyltransfer

| Symbols: | mitochondrial elongation factor, putative | chr2:18572411-18576756 FORWARD 39

46

| Symbols: OASB, ACS1, CPACS1, ATCS-B | OASB (O-ACETYLSERINE (THIOL) LYASE B); cysteine synthase | chr2:18129604-1813

54

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitocho

| Symbols: | mitochondrial substrate carrier family protein | chr1:27917437-27919987 FORWARD30

| Symbols: | unknown protein | chr1:8425981-8427045 REVERSE 59

43

| Symbols: ATRFNR2 | ATRFNR2 (ROOT FNR 2); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ r

| Symbols: | myrosinase-associated protein, putative | chr1:20158854-20160747 REVERSE 80

| Symbols: | unknown protein | chr1:27479027-27481258 FORWARD 58

35

| Symbols: OTC | OTC (ORNITHINE CARBAMOYLTRANSFERASE); amino acid binding / carboxyl- or carbamoyltransferase/ ornit

67

| Symbols: OPR3 | OPR3 (OPDA-REDUCTASE 3); 12-oxophytodienoate reductase | chr2:2359240-2361971 REVERSE

| Symbols: | catalytic | chr2:13053777-13056315 REVERSE 45

45

| Symbols: | 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative | chr2:13058500-1306

| Symbols: | transketolase, putative | chr2:18672737-18675589 FORWARD 76

95

| Symbols: ATMS2 | AtMS2; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthas

64

| Symbols: PDK, ATPDHK | PDK (PYRUVATE DEHYDROGENASE KINASE); ATP binding / histidine phosphotransfer kinase/ pyruv

54

| Symbols: TGD2 | TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2); lipid transporter/ phospholipid binding | chr3:7087657-708964

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr3:22768974-22771274 REVERSE 150

| Symbols: ATPC1 | ATPC1; enzyme regulator | chr4:2350761-2351882 REVERSE 61

43

| Symbols: ATRFNR1 | ATRFNR1 (ROOT FNR 1); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ r

| Symbols: | aminomethyltransferase | chr4:7263640-7265425 FORWARD 44

34

| Symbols: ATS2, EMB1995 | ATS2; 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase | chr4:14932515-14934489

95

| Symbols: ATCIMS, ATMETS, ATMS1 | ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ c

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:10374927-10377227 FORWARD 150

| Symbols: | histidinol-phosphate aminotransferase, putative | chr1:27067168-27068999 FORWARD 22

97

| Symbols: | aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) | chr4:16973007-16977949 REVERSE

28

| Symbols: ALAAT2 | ALAAT2 (ALANINE AMINOTRANSFERASE 2); ATP binding / L-alanine:2-oxoglutarate aminotransferase | c

66

| Symbols: | phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase | chr5:5659839-5662087 REV

53

| Symbols: GPPS, GPS1 | geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / preny

| Symbols: | acyl-CoA thioesterase family protein | chr4:227726-231494 FORWARD 63

47

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast

56

| Symbols: GS2, GLN2, ATGSL1 | GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammonia ligase | chr5:13831220-13833239 FO

| Symbols: PYRD | PYRD (pyrimidine d); dihydroorotate dehydrogenase | chr5:7847792-7850243 REVERSE43

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr4:17292479-17293717 REVERSE 45

| Symbols: | enoyl-CoA hydratase/isomerase family protein | chr4:15387365-15390290 REVERSE 43

54

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitocho

61

| Symbols: IVD, ATIVD | IVD (ISOVALERYL-COA-DEHYDROGENASE); ATP binding / isovaleryl-CoA dehydrogenase | chr3:16621

52

| Symbols: GDH3 | GDH3 (GLUTAMATE DEHYDROGENASE 3); binding / catalytic/ oxidoreductase/ oxidoreductase, acting on t

28

| Symbols: PECT1 | PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1); ethanolamine-phosphate cytidylyltrans

59

| Symbols: ftsh3 | ftsh3 (FtsH protease 3); ATP-dependent peptidase/ ATPase | chr2:12489911-12492999 REVERSE

42

| Symbols: OVA4 | OVA4 (ovule abortion 4); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tryptophan-tRNA ligas

| Symbols: PPR336 | PPR336 (pentatricopeptide repeat 336) | chr1:22865326-22866552 REVERSE 74

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:20901364-20902560 FORWARD 61

| Symbols: | mitochondrial transcription termination factor family protein / mTERF family protein 39| chr1:7406406-7407578 R

28

| Symbols: PDH-E1 ALPHA | PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transfe

38

| Symbols: LIN2, HEMF1, ATCPO-I | LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase | chr1:869302-871175 REVERSE

| Symbols: | GPI-anchor transamidase, putative | chr1:2801283-2804392 FORWARD 22

54

| Symbols: PDH-E1 BETA | PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferrin

40

| Symbols: EMB3003 | EMB3003 (embryo defective 3003); acyltransferase/ dihydrolipoyllysine-residue acetyltransferase/ pro

28

| Symbols: | acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative | chr1:16577662-16579549

31

| Symbols: | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative | chr1:24539088-24541861 FOR

| Symbols: | transketolase family protein | chr2:14568956-14570844 REVERSE 54

84

| Symbols: SSI2, FAB2 | SSI2; acyl-[acyl-carrier-protein] desaturase/ stearoyl-CoA 9-desaturase | chr2:18120107-18122495 FO

20

| Symbols: CER7, G3 | CER7 (ECERIFERUM 7); 3~-5~-exoribonuclease/ RNA binding | chr3:22354245-22356440 FORWARD

| Symbols: | unknown protein | chr4:7754248-7755837 REVERSE 56

| Symbols: | unknown protein | chr4:10844433-10846085 REVERSE 52

33

| Symbols: PSAT | PSAT; O-phospho-L-serine:2-oxoglutarate aminotransferase | chr4:16904205-16905497 FORWARD

| Symbols: NDP1 | NDP1 (RANDOM POTATO CDNA CLONE); binding | chr5:419747-421958 REVERSE 70

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:2941864-2943324 FORWARD 55

| Symbols: | 3-isopropylmalate dehydrogenase, chloroplast, putative | chr5:4576220-4578111 FORWARD 57

95

| Symbols: ATMS3 | ATMS3 (methionine synthase 3); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransfer

| Symbols: ELM1 | ELM1 (ELONGATED MITOCHONDRIA 1) | chr5:7397762-7400746 REVERSE 29

47

| Symbols: CUE1, PPT, ARAPPT | CUE1 (CAB UNDEREXPRESSED 1); antiporter/ triose-phosphate transmembrane transporter |

| Symbols: | unknown protein | chr5:17823876-17825620 REVERSE 40

| Symbols: | peptidase M48 family protein | chr5:21017110-21018987 FORWARD 27

| Symbols: | protein phosphatase 2C, putative / PP2C, putative | chr5:21549228-21552132 FORWARD 48

58

| Symbols: BIO1 | BIO1 (biotin auxotroph 1); adenosylmethionine-8-amino-7-oxononanoate transaminase | chr5:23318593-2

26

| Symbols: | oxidoreductase, zinc-binding dehydrogenase family protein | chr5:25466380-25468296 REVERSE

32

| Symbols: ATNIFS1, NIFS1, NFS1, ATNFS1 | NFS1; ATP binding / cysteine desulfurase/ transaminase | chr5:26296349-262977

| Symbols: | mitochondrial substrate carrier family protein | chr5:24831843-24833735 REVERSE 32

42

| Symbols: NAD2A, NAD2.1, NAD2 | encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from two

| Symbols: | mitochondrial substrate carrier family protein | chr5:2310248-2312082 FORWARD 32

58

| Symbols: | mitochondrial transcription termination factor-related / mTERF-related | chr3:17289452-17290804 FORWARD

64

| Symbols: BCE2, LTA1, DIN3 | BCE2; acetyltransferase/ alpha-ketoacid dehydrogenase/ dihydrolipoamide branched chain acy

59

| Symbols: LON3 | LON3 (LON PROTEASE 3); ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide

51

| Symbols: | mitochondrial transcription termination factor-related / mTERF-related | chr1:22902239-22903612 FORWARD

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:22366959-22368648 REVERSE 32

62

| Symbols: ATTIC110, TIC110 | TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) | chr1:2

acid

| Symbols: | hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on94 anhydrides, catalyzin

37

| Symbols: | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | chr1:19019185-19021735 REVERSE

94

| Symbols: | vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa sub

| Symbols: | cytosol aminopeptidase | chr2:10287017-10289450 REVERSE 73

26

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chlorop

32

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitocho

| Symbols: | 6-phosphogluconate dehydrogenase family protein | chr3:482498-483958 FORWARD32

39

| Symbols: | diaminopimelate decarboxylase, putative / DAP carboxylase, putative | chr3:4806771-4808954 FORWARD

40

| Symbols: LTA2, PLE2 | LTA2; dihydrolipoyllysine-residue acetyltransferase | chr3:9460632-9462585 FORWARD

24

| Symbols: GSA2 | GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2); catalytic/ glutamate-1-semialdehyde 2,1-aminomu

16

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_

26

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 pla

| Symbols: | calcium-binding EF hand family protein | chr4:15501134-15503321 FORWARD 47

94

| Symbols: | vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, put

39

| Symbols: | diaminopimelate decarboxylase, putative / DAP carboxylase, putative | chr5:3827806-3829942 REVERSE

57

| Symbols: | peptidase M16 family protein / insulinase family protein | chr5:22946906-22952576 REVERSE

28

| Symbols: ALAAT2 | ALAAT2 (ALANINE AMINOTRANSFERASE 2); ATP binding / L-alanine:2-oxoglutarate aminotransferase | c

62

| Symbols: ATERS, OVA3, ERS | ERS (GLUTAMATE TRNA SYNTHETASE); glutamate-tRNA ligase | chr5:25630196-25633099 REV

34

| Symbols: OVA6, PRORS1 | OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tR

| Symbols: NS1, OVA8, ATNS1 | NS1; asparagine-tRNA ligase | chr4:9681558-9684833 FORWARD 68

| Symbols: | dihydrolipoamide S-acetyltransferase, putative | chr3:4596240-4600143 FORWARD 21

| Symbols: AlaAT1 | AlaAT1 (ALANINE AMINOTRANSFERAS); ATP binding / L-alanine:2-oxoglutarate28 aminotransferase | chr1:5

19

| Symbols: CYP703A2, CYP703 | CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2); oxidoreductase

58

| Symbols: OPCL1 | OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase | chr1:7103645-7105856 REVERSE

19

| Symbols: | 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synth

| Symbols: | DEAD/DEAH box helicase, putative (RH22) | chr1:22090369-22092885 REVERSE 27

| Symbols: | deoxynucleoside kinase family | chr1:27112159-27114248 REVERSE 27

| Symbols: | threonine synthase, putative | chr1:27398760-27400393 REVERSE 39

28

| Symbols: FAB1, KAS2 | FAB1 (FATTY ACID BIOSYNTHESIS 1); 3-oxoacyl-[acyl-carrier-protein] synthase/ fatty-acid synthase |

| Symbols: | 5~ nucleotidase family protein | chr2:10170680-10173622 FORWARD 48

| Symbols: | AICARFT/IMPCHase bienzyme family protein | chr2:14765347-14768269 REVERSE 34

| Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:15016883-15019866 FORWARD37

| Symbols: | acyl-activating enzyme 13 (AAE13) | chr3:5476490-5480128 FORWARD 23

| Symbols: AAE7, ACN1 | AAE7 (ACYL-ACTIVATING ENZYME 7); AMP binding / acetate-CoA ligase | 26 chr3:5773231-5775411 RE

66

| Symbols: ICL | ICL (ISOCITRATE LYASE); catalytic/ isocitrate lyase | chr3:7652789-7655873 REVERSE

| Symbols: PMH1, ATRH9 | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent107 helicase/ DNA binding / RN

| Symbols: | glutamyl-tRNA(Gln) amidotransferase, putative | chr3:9339640-9342044 REVERSE 56

| Symbols: | unknown protein | chr3:10027163-10030062 REVERSE 28

| Symbols: | cytosol aminopeptidase family protein | chr4:15042621-15045248 REVERSE 73

| Symbols: | cytosol aminopeptidase family protein | chr4:15046589-15049304 REVERSE 73

61

| Symbols: G6PD2 | G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2); glucose-6-phosphate dehydrogenase | chr5:41589

| Symbols: | SET domain-containing protein | chr5:4601139-4603873 FORWARD 33

| Symbols: | phosphoglucosamine mutase family protein | chr5:5778168-5781863 FORWARD 65

36

| Symbols: CAC2 | CAC2; acetyl-CoA carboxylase/ biotin carboxylase | chr5:13584300-13588268 FORWARD

| Symbols: | terpene synthase/cyclase family protein | chr5:19501157-19504357 REVERSE 15

26

| Symbols: ATPPOX, PDX3 | ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5~-PHOSPHATE OXIDASE); pyridoxamine-ph

49

| Symbols: PKP1, PKP-BETA1, PKP2 | PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1); pyruvate kinase | chr5:2146

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:24528423-24529988 REVERSE 52

| Symbols: | elongation factor family protein | chr2:13213496-13218544 REVERSE 52

33

| Symbols: STA1, ATATM3, ATM3 | STA1 (STARIK 1); ATPase, coupled to transmembrane movement of substances / transpor

| Symbols: | metalloendopeptidase | chr5:16945308-16952647 FORWARD 52

54

| Symbols: MIRO1, emb2473 | MIRO1 (Miro-related GTP-ase 1); GTP binding | chr5:9722816-9727112 FORWARD

| Symbols: | threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) | chr5:9437351-944156842 FORWARD

| Symbols: DGS1 | DGS1 (DGD1 SUPPRESSOR 1) | chr5:3974374-3978066 REVERSE 46

| Symbols: | AAA-type ATPase family protein | chr4:17257958-17260661 FORWARD 53

| Symbols: | tRNA synthetase class II (D, K and N) family protein | chr4:16189285-16193260 REVERSE21

43

| Symbols: OVA1 | OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase/ methionine-tRNA ligase/ nucleotide bin

| Symbols: emb1796 | emb1796 (embryo defective 1796); ATP binding | chr3:18256086-18257975 FORWARD 34

32

| Symbols: ATGLDH | ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE); L-gulono-1,4-lactone dehydrogenase/ galac

51

| Symbols: ETFQO | ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase); catalytic/ electron carrier/ electron-t

39

| Symbols: ACX6 | ACX6 (ACYL-COA OXIDASE 6); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ o

| Symbols: ATNTT2 | ATNTT2; ATP:ADP antiporter | chr1:5326426-5328688 FORWARD 36

61

| Symbols: G6PD3 | G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3); glucose-6-phosphate dehydrogenase | chr1:86094

| Symbols: DEG15 | DEG15; endopeptidase | chr1:9920673-9924347 REVERSE 81

| Symbols: | prolyl oligopeptidase family protein | chr1:18662480-18666185 FORWARD 31

48

| Symbols: | flavodoxin family protein / radical SAM domain-containing protein | chr1:28220849-28223597 REVERSE

24

| Symbols: LACS9 | LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9); long-chain-fatty-acid-CoA ligase | chr1:29148501-291517

36

| Symbols: NTT1, ATNTT1 | NTT1 (NUCLEOTIDE TRANSPORTER 1); ATP:ADP antiporter | chr1:30191954-30194280 FORWARD

| Symbols: | fimbrin-like protein, putative | chr2:1659762-1662748 REVERSE 24

| Symbols: | AAA-type ATPase family protein | chr2:7965829-7968915 FORWARD 53

| Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr2:13317570-13319518 REVERSE 61

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr3:513607-515604 FORWARD 38

53

| Symbols: | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding | chr3:692188-695424 FORWARD

| Symbols: | beta-fructofuranosidase/ catalytic | chr3:1733119-1735757 REVERSE 41

41

| Symbols: | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative | chr

32

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_

81

| Symbols: ATABC1, ATATH10 | ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1); transporter | chr4:708652-711095 F

| Symbols: | AAA-type ATPase family protein | chr5:5568578-5571565 FORWARD 53

41

| Symbols: LACS7, ATLACS7 | LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7); long-chain-fatty-acid-CoA ligase/ protein bindin

| Symbols: | serine-type peptidase | chr5:14248202-14253272 REVERSE 45

| Symbols: | 5~ nucleotidase family protein | chr5:19849645-19853382 FORWARD 50

| Symbols: GLT1 | GLT1; glutamate synthase (NADH) | chr5:21700518-21709629 FORWARD 94

80

| Symbols: | aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) | chr4:16973007-16977278 REVERSE

| Symbols: | calcium-binding mitochondrial protein-related | chr3:22098306-22101759 REVERSE 39

| Symbols: | DNA gyrase subunit A family protein | chr3:3339612-3346243 REVERSE 30

51

| Symbols: LON4 | LON4 (LON PROTEASE 4); ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide

32

| Symbols: ftsh10 | ftsh10 (FtsH protease 10); ATP binding / ATPase/ metalloendopeptidase/ nucleoside-triphosphatase/ nuc

| Symbols: GRP23 | GRP23 (GLUTAMINE-RICH PROTEIN23); binding | chr1:3363535-3366276 FORWARD 70

| Symbols: | S1 RNA-binding domain-containing protein | chr1:4361778-4365189 REVERSE 27

| Symbols: | calcium-binding EF hand family protein | chr1:24362382-24366011 REVERSE 44

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:28617948-28622581 REVERSE 20

| Symbols: | DC1 domain-containing protein | chr3:3569828-3571960 FORWARD 17

| Symbols: | glycosyl hydrolase family 3 protein | chr3:6815613-6818308 REVERSE 24

32

| Symbols: SUS4, ATSUS4 | SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups | chr3

32

| Symbols: SUS1, ASUS1, atsus1 | SUS1 (SUCROSE SYNTHASE 1); UDP-glycosyltransferase/ sucrose synthase | chr5:7050599-7

| Symbols: | DNA-directed RNA polymerase (RPOT2) | chr5:5115793-5121609 REVERSE 17

| Symbols: | DNA topoisomerase family protein | chr4:15165280-15172534 FORWARD 84

50

| Symbols: ATPREP1, ATZNMP | ATPREP1 (PRESEQUENCE PROTEASE 1); metalloendopeptidase | chr3:6625578-6631874 REV

| Symbols: | tRNA-splicing endonuclease positive effector-related | chr1:24462958-24466888 REVERSE 25

| Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr3:566271-569865 FORWARD 58

22

| Symbols: | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding | chr3:6855944-6862930 REVERSE

| Symbols: | glucan phosphorylase, putative | chr3:11252871-11257587 FORWARD 59

18

| Symbols: | disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative | chr3:16196292-16200423 FORWARD

| Symbols: | unknown protein | chr4:6705178-6708846 REVERSE 17

| Symbols: | unknown protein | chr4:17093213-17096573 REVERSE 26

| Symbols: GRL, NAP1, NAPP | GRL (GNARLED); transcription activator | chr2:14795970-14803525 36 REVERSE

28

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 pla

25

| Symbols: YCF2.1 | Encodes an unknown protein. This gene is regulated by AtSIG6 transcriptionally. | chrC:86474-93358 FOR

emPAI

prot_mass prot_matches prot_matches_sig

7679 27 13 114.45

9202 34 12 54.32

4881 8 4 23.76

41563 241 73 13.58

10465 37 15 8.74

10859 37 15 7.94

15803 26 7 6.29

6922 10 2 5.69

41834 122 29 5.6

40373 99 19 5.45

5259 12 2 5.17

59765 85 30 5.13

59847 87 30 5.11

59993 86 30 5.09

40338 100 18 4.93

5599 12 2 4.61

12054 14 6 4.47

40463 53 13 4.38

40462 86 16 3.92

6087 22 2 3.88

29264 180 5 3.85

57535 78 20 3.51

40863 99 25 3.45

6637 17 2 3.34

16989 16 4 3.22

40130 184 7 3.17

11940 53 24 3.17

30381 27 7 3.08

25485 19 4 3.01

12726 11 2 2.85

7941 9 3 2.48

8259 14 2 2.37

5271 11 1 2.36

11338 22 4 2.34

8346 10 2 2.32

8413 6 2 2.28

42668 39 9 2.25

8500 7 2 2.23

55222 56 18 2.04

12500 17 4 1.99

5972 18 8 1.93

44022 36 12 1.89

20150 37 14 1.84

9780 13 0 1.82

16933 16 1 1.8

54239 86 6 1.53

39436 24 5 1.48

36010 26 7 1.45

28093 46 9 1.43

57059 106 39 1.42

15750 10 4 1.42

44759 44 4 1.42

28266 44 9 1.41

28280 43 9 1.41

24659 16 4 1.37

29634 19 2 1.32

57237 32 13 1.27

53435 40 5 1.25

49267 29 11 1.23

31791 16 5 1.2

22787 14 1 1.17

56331 32 12 1.16

113822 76 15 1.15

61584 57 11 1.14

28209 41 9 1.13

28659 44 9 1.11

28688 43 9 1.11

28899 43 9 1.1

19136 18 4 1.09

49032 27 4 1.08

59180 34 3 1.08

24370 16 0 1.06

86221 57 18 1.04

15130 11 1 0.99

52963 59 9 0.98

20488 12 1 0.98

31617 16 5 0.97

26362 25 5 0.96

10127 5 1 0.95

54237 75 5 0.94

55552 29 8 0.92

62339 39 7 0.89

56923 35 8 0.88

11015 9 1 0.86

22829 17 2 0.86

28745 37 9 0.86

41112 18 6 0.84

36024 16 4 0.81

11815 3 0 0.79

43488 29 1 0.78

11989 11 2 0.77

108760 53 12 0.76

12262 2 1 0.75

45013 60 19 0.75

12345 7 2 0.75

18779 6 1 0.75

32347 24 1 0.74

45602 35 5 0.74

52347 27 4 0.73

40001 23 1 0.71

54015 31 4 0.7

48069 36 1 0.69

6261 5 0 0.68

20556 30 0 0.67

20622 30 0 0.67

20558 29 0 0.67

35296 26 7 0.66

56795 25 8 0.66

42956 19 3 0.65

35597 30 3 0.65

28768 11 4 0.64

36778 26 7 0.63

29193 17 1 0.63

29464 25 1 0.62

37688 26 7 0.61

6856 3 0 0.61

6883 5 0 0.61

30161 13 6 0.6

6954 6 2 0.6

30619 13 2 0.59

7066 8 0 0.59

39170 26 7 0.58

31139 12 3 0.58

31723 9 4 0.57

31687 13 5 0.57

39964 11 2 0.57

15529 11 2 0.56

7477 3 0 0.56

57476 45 6 0.55

15950 6 0 0.55

32983 18 3 0.54

58951 19 4 0.54

42449 17 2 0.53

7808 4 0 0.53

34439 56 6 0.52

51883 25 3 0.52

70240 23 4 0.51

69692 28 3 0.51

43787 24 0 0.51

17181 13 0 0.5

26155 7 2 0.5

17304 6 0 0.5

17137 11 1 0.5

36079 15 2 0.49

45049 15 3 0.49

8286 3 1 0.49

8357 11 0 0.49

54539 26 1 0.49

8320 2 0 0.49

54683 20 3 0.48

73315 44 5 0.48

18000 9 1 0.48

18050 11 1 0.47

8703 5 2 0.47

56254 32 8 0.47

37929 21 4 0.46

115889 44 6 0.46

114672 50 9 0.46

8768 1 0 0.46

8972 9 1 0.45

38472 19 4 0.45

8949 5 0 0.45

39678 15 2 0.44

108983 37 8 0.44

19205 4 1 0.44

29057 9 2 0.44

9432 5 1 0.43

40949 9 3 0.42

9634 3 0 0.42

20619 8 3 0.41

31174 20 3 0.41

73174 24 3 0.41

52262 15 4 0.41

42748 17 4 0.4

10372 6 1 0.39

54156 21 5 0.39

54190 15 1 0.39

21546 14 1 0.39

10367 7 1 0.39

21543 6 2 0.39

21566 4 2 0.39

44948 7 1 0.38

44465 20 4 0.38

79303 31 2 0.38

10590 4 0 0.38

33743 11 1 0.37

34228 20 1 0.37

10806 9 1 0.37

22641 14 0 0.37

11101 3 0 0.36

23068 2 1 0.36

23021 7 1 0.36

11161 3 1 0.36

11185 4 0 0.36

35641 11 1 0.35

35751 23 3 0.35

23776 4 2 0.35

60771 22 4 0.35

11402 9 0 0.35

23496 9 3 0.35

36585 22 4 0.34

49607 27 2 0.34

49061 15 2 0.34

49152 18 3 0.34

11819 3 0 0.34

50028 15 2 0.33

11960 14 0 0.33

37470 12 2 0.33

12056 8 0 0.33

12544 4 0 0.32

25832 17 1 0.32

12173 7 0 0.32

12544 1 0 0.32

90739 28 2 0.32

25668 4 2 0.32

39232 8 1 0.32

25871 10 2 0.32

78208 40 5 0.32

12264 2 0 0.32

12408 3 2 0.32

40331 15 1 0.31

53479 18 2 0.31

12681 8 0 0.31

26335 8 0 0.31

12636 2 0 0.31

53980 12 3 0.31

26150 6 1 0.31

12748 3 0 0.31

53957 15 3 0.31

27143 18 2 0.3

82214 21 2 0.3

13819 6 1 0.29

27991 32 2 0.29

27838 11 1 0.29

28167 12 1 0.29

28145 10 3 0.29

14229 12 0 0.28

28770 10 0 0.28

28417 6 0 0.28

28532 13 0 0.28

28968 5 1 0.28

29133 10 0 0.28

45707 17 2 0.27

30024 4 0 0.27

44781 13 5 0.27

76256 18 1 0.27

14623 3 0 0.27

14547 5 2 0.27

30652 9 1 0.26

14886 4 0 0.26

15002 6 0 0.26

15128 7 1 0.26

31919 13 3 0.25

64599 22 3 0.25

64172 12 2 0.25

32567 5 0 0.25

48086 9 1 0.25

15840 8 0 0.25

31535 8 1 0.25

15527 8 0 0.25

16026 12 0 0.24

32833 7 1 0.24

50273 17 2 0.24

16111 9 1 0.24

49813 33 1 0.24

16115 13 1 0.24

33755 13 2 0.24

15931 7 0 0.24

52754 14 4 0.23

68978 19 1 0.23

17118 5 0 0.23

16873 8 0 0.23

17075 4 1 0.23

71019 17 2 0.23

17185 7 1 0.23

35030 12 0 0.23

17048 5 0 0.23

16798 6 0 0.23

36432 8 1 0.22

54506 15 2 0.22

53942 9 2 0.22

35992 7 0 0.22

17347 7 0 0.22

37877 8 1 0.21

56244 15 2 0.21

38301 12 3 0.21

18541 6 2 0.21

57068 16 4 0.21

18754 5 0 0.21

18494 8 0 0.21

37841 12 3 0.21

57402 18 1 0.21

55681 13 1 0.21

74996 15 7 0.21

18594 7 0 0.21

18265 4 0 0.21

18660 2 0 0.21

56258 12 2 0.21

19574 7 1 0.2

117295 20 2 0.2

39598 6 1 0.2

19104 3 0 0.2

80374 17 3 0.2

19501 19 1 0.2

38497 4 2 0.2

58769 12 2 0.2

20319 3 0 0.19

62211 20 2 0.19

19923 6 0 0.19

41416 7 3 0.19

41307 8 1 0.19

21127 13 1 0.18

43473 7 1 0.18

66455 10 2 0.18

42703 17 3 0.18

65019 22 0 0.18

21421 6 0 0.18

43694 5 0 0.18

21534 5 1 0.18

20960 8 0 0.18

65547 25 2 0.18

21211 3 0 0.18

42764 15 3 0.18

44403 4 1 0.18

21349 3 0 0.18

87434 13 0 0.18

21195 3 0 0.18

21057 18 0 0.18

65603 12 1 0.18

43132 11 1 0.18

44467 9 1 0.18

66919 21 2 0.18

45280 9 3 0.17

22804 6 0 0.17

46128 15 0 0.17

22338 9 1 0.17

22608 6 0 0.17

70003 12 2 0.17

67832 16 1 0.17

45052 6 0 0.17

23415 6 0 0.16

74430 8 3 0.16

47955 7 2 0.16

24221 17 0 0.16

49620 9 1 0.16

23326 6 0 0.16

71952 21 2 0.16

47546 10 0 0.16

71458 15 1 0.16

24215 5 0 0.16

48039 17 2 0.16

24146 2 0 0.16

52368 14 3 0.15

50022 24 3 0.15

24635 3 0 0.15

51961 7 0 0.15

50824 16 3 0.15

25871 10 0 0.15

25724 6 0 0.15

51920 34 5 0.15

50195 16 3 0.15

51604 8 0 0.15

25831 5 1 0.15

25943 10 0 0.15

25473 9 1 0.15

24741 2 0 0.15

26170 9 1 0.15

24899 6 0 0.15

52744 9 1 0.15

25436 3 1 0.15

24891 4 0 0.15

75934 20 1 0.15

25017 4 0 0.15

26094 3 0 0.15

26039 5 0 0.15

52063 5 0 0.15

53902 20 0 0.14

27548 4 0 0.14

53626 11 0 0.14

26380 6 0 0.14

54504 17 1 0.14

56955 9 1 0.14

83355 19 1 0.14

26576 6 0 0.14

27351 3 0 0.14

54245 8 1 0.14

26570 3 1 0.14

27051 4 0 0.14

27773 3 2 0.14

27851 4 1 0.14

26862 5 0 0.14

27932 6 0 0.14

55351 10 0 0.14

27172 11 1 0.14

28987 12 1 0.13

28883 9 0 0.13

88658 13 1 0.13

29585 7 2 0.13

58331 14 0 0.13

30123 24 0 0.13

29601 7 0 0.13

29097 3 0 0.13

29163 3 0 0.13

28961 4 0 0.13

28440 13 0 0.13

60040 15 1 0.13

30195 5 0 0.13

28914 11 0 0.13

58456 11 1 0.13

28480 7 0 0.13

28922 7 1 0.13

30131 10 1 0.13

31867 12 0 0.12

62190 19 2 0.12

30798 8 3 0.12

63788 10 3 0.12

65474 11 2 0.12

31949 7 1 0.12

62205 17 1 0.12

65977 31 0 0.12

32506 11 2 0.12

31304 4 0 0.12

61897 15 2 0.12

30892 5 1 0.12

31270 2 1 0.12

31891 5 0 0.12

31897 12 1 0.12

161006 35 2 0.12

31177 9 1 0.12

35766 7 0 0.11

70567 21 0 0.11

67111 16 3 0.11

35666 10 0 0.11

69896 17 3 0.11

70760 13 1 0.11

34433 8 0 0.11

35025 6 1 0.11

67582 26 2 0.11

33300 5 1 0.11

34003 12 0 0.11

32815 5 0 0.11

35308 4 0 0.11

33421 4 0 0.11

36390 16 0 0.1

36816 14 0 0.1

38705 8 1 0.1

36521 9 0 0.1

38174 14 0 0.1

36458 7 1 0.1

109667 26 2 0.1

38075 13 1 0.1

39341 7 0 0.1

37906 8 0 0.1

37579 11 0 0.1

77018 14 0 0.1

36058 5 0 0.1

37058 11 1 0.1

38396 2 0 0.1

37179 9 0 0.1

74878 11 3 0.1

35893 2 0 0.1

38858 10 1 0.1

38131 5 0 0.1

38745 13 0 0.1

35964 9 0 0.1

40981 10 0 0.09

80857 17 1 0.09

43821 6 0 0.09

81345 12 0 0.09

43278 9 1 0.09

42607 6 1 0.09

41139 14 0 0.09

40125 18 0 0.09

43014 7 1 0.09

43093 7 1 0.09

83288 19 1 0.09

41915 8 0 0.09

41824 15 1 0.09

40401 3 0 0.09

40606 2 1 0.09

42977 4 0 0.09

43572 3 1 0.09

40232 4 0 0.09

41261 8 0 0.09

42893 7 1 0.09

42571 3 0 0.09

42996 5 0 0.09

80385 13 2 0.09

84873 16 1 0.09

41591 10 1 0.09

41889 7 1 0.09

87762 12 2 0.09

41171 14 1 0.09

42712 12 0 0.09

43672 10 0 0.09

39769 7 0 0.09

84646 17 1 0.09

87822 10 2 0.09

46787 10 0 0.08

98774 15 2 0.08

48022 7 0 0.08

49534 13 1 0.08

46600 6 1 0.08

48346 5 1 0.08

44080 5 0 0.08

47780 9 1 0.08

48801 10 0 0.08

46917 24 0 0.08

46041 6 0 0.08

48675 13 1 0.08

45372 10 1 0.08

44785 5 1 0.08

47347 5 0 0.08

89468 31 1 0.08

45727 11 0 0.08

46299 18 1 0.08

45251 16 1 0.08

45059 10 0 0.08

47600 8 0 0.08

44111 3 0 0.08

44799 5 0 0.08

44672 3 1 0.08

48334 13 0 0.08

44356 11 0 0.08

46059 16 0 0.08

44443 3 1 0.08

45835 9 1 0.08

48608 7 0 0.08

48428 11 1 0.08

45301 3 1 0.08

47785 10 0 0.08

45964 12 1 0.08

47065 5 1 0.08

44305 12 1 0.08

90993 13 1 0.08

47917 4 0 0.08

44310 7 0 0.08

45981 3 0 0.08

49684 12 0 0.08

46100 9 0 0.08

92903 12 0 0.08

46095 10 0 0.08

50606 18 0 0.07

53584 19 0 0.07

55300 4 0 0.07

54334 18 0 0.07

51760 17 1 0.07

53072 7 1 0.07

103981 15 2 0.07

51844 15 1 0.07

56098 16 0 0.07

112565 22 1 0.07

54392 6 1 0.07

56584 9 0 0.07

54188 5 1 0.07

54760 9 1 0.07

53945 6 0 0.07

49914 4 0 0.07

53829 10 0 0.07

54037 4 0 0.07

50106 11 0 0.07

50452 15 0 0.07

56611 14 0 0.07

53899 5 0 0.07

55665 15 1 0.07

54385 4 1 0.07

54643 6 0 0.07

108824 14 1 0.07

59986 7 0 0.06

63768 12 1 0.06

60880 13 0 0.06

64171 6 1 0.06

58887 14 0 0.06

60410 5 0 0.06

58273 16 0 0.06

59679 11 1 0.06

58689 15 0 0.06

65220 6 0 0.06

65078 13 0 0.06

57402 9 0 0.06

58418 14 0 0.06

64783 9 0 0.06

65436 14 0 0.06

59366 12 0 0.06

60423 15 0 0.06

63543 10 0 0.06

64546 11 1 0.06

63798 19 1 0.06

57601 5 1 0.06

58551 7 0 0.06

61594 8 1 0.06

61667 15 1 0.06

67461 13 1 0.06

58290 8 0 0.06

63065 3 1 0.06

58863 20 0 0.06

67302 9 0 0.06

59623 10 0 0.06

63766 7 1 0.06

59733 14 1 0.06

72858 16 1 0.05

80598 14 0 0.05

141374 18 1 0.05

73018 9 1 0.05

81626 14 0 0.05

69193 8 0 0.05

69732 16 1 0.05

74869 12 0 0.05

69800 11 0 0.05

71703 18 0 0.05

68855 15 0 0.05

70540 10 1 0.05

76479 10 0 0.05

67885 9 0 0.05

67716 11 1 0.05

76591 6 1 0.05

81343 9 0 0.05

72890 11 1 0.05

76812 9 0 0.05

68489 9 0 0.05

73853 10 0 0.05

71322 18 1 0.05

68986 19 1 0.05

76228 14 0 0.05

69695 12 1 0.05

75753 6 0 0.05

75701 10 0 0.05

68270 8 0 0.05

68869 10 1 0.05

71063 19 1 0.05

78045 11 0 0.05

81996 10 0 0.05

73188 13 1 0.05

243741 47 1 0.05

87061 13 1 0.04

85967 12 0 0.04

105384 30 0 0.04

105430 22 1 0.04

89727 14 0 0.04

102543 11 1 0.04

85842 18 0 0.04

83793 28 0 0.04

88957 14 0 0.04

85516 4 0 0.04

86415 11 0 0.04

93514 7 0 0.04

93509 5 0 0.04

115531 14 0 0.03

141776 35 1 0.03

121680 19 1 0.03

121440 11 0 0.03

122702 8 1 0.03

112742 21 0 0.03

109087 18 1 0.03

140770 23 0 0.03

108746 30 0 0.03

112724 20 0 0.03

156849 10 0 0.02

474723 43 0 0.01

271277 17 0 0.01

proteins detected in fractions peptide match (+number of homologues)mapman bin functional category description cellular component according to TAIR database

At2g28470.1 At2g28470.1 10.6.2 cell wall.degradation.mannan-xylose-arabinose-fucose cell wall

BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT2G32810.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.1); similar to beta-galactosidase [Fragaria x ananassa] (GB:CAC44501.1); similar to beta-D-galactosidase [Pyrus pyrifolia] (GB:BAD91083.1); similar to beta-galactosidase [Raphanus sativus] (GB:BAD20774.2); contains InterPro domain Glyc

At3g46440.1 At3g46440.1 +1 10.1.05 cell wall.precursor synthesis.UXS cell wall

UXS5 (UDP-Xyl synthase 5); catalytic encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. similar to UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE) [Arabidopsis thaliana] (TAIR:AT5G59290.2); similar to UXS6 [Arabidopsis thaliana] (TAIR:AT2G28760.3); similar to UDP-glucuronic acid decarboxylase 3 [Populus tomentosa] (GB:AAX37336.1); contains InterPro domain NAD-dependent epimerase/deh

At1g03860.1, At1g03860.2 At1g03860.1 +1 31.3 cell.cycle mitochondrion, chloroplast, cell wall, vacuole, thaliana] (TAIR:AT4G28510.1); similar to prohibitin complex I

ATPHB2 (PROHIBITIN 2) prohibitin 2 similar to ATPHB1 (PROHIBITIN 1) [Arabidopsis plasma membrane, mitochondrial respiratory chain 1-like protein [Brassica napus] (GB:AAK07610.1); contains InterPro domain Prohibitin; (InterPro:IPR000163); contains InterPro domain Band 7 protein; (InterPro:IPR001107)

At1g53720.1 At1g53720.1 31.3 cell.cycle nucleus

ATCYP59/CYP59 (CYCLOPHILIN 59); RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis? trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles. similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / ro

At2g28620.1 At2g28620.1 31.1 cell.organisation chloroplast

kinesin motor protein-related similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G36200.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G37420.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT3G45850.1); similar to Kinesin, motor re (GB:ABD32308.1); similar to putative kinesin [Oryza sativa (japonica cultivar-group)] (GB:AAV44208.1); similar to KRP120-2 [Daucus carota] (GB:AAK91129.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752)

At2g35630.1 At2g35630.1 31.1 cell.organisation microtubule cytoskeleton organization

MOR1 (MICROTUBULE ORGANIZATION 1) Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28155.1); similar to PREDICTED: similar to colonic and hepatic tumor over-expressed protein isoform b isoform 2 [Rattus norve (GB:XP_001068589.1); similar to PREDICTED: similar to

At3g46000.1 At3g46000.1 31.1 cell.organisation cytoplasm, binding

ADF2 (ACTIN DEPOLYMERIZING FACTOR 2); actin nucleus Encodes depolymerizing factor 2. Identical to Actin-depolymerizing factor 2 (ADF-2) (AtADF2) (ADF2) [Arabidopsis Thaliana] (GB:Q39251;GB:Q9LZT2); similar to ADF4 (ACTIN DEPOLYMERIZING FACTOR 4), actin binding [Arabidopsis thaliana] (TAIR:AT5G59890.1); similar to Actin-depolymerizing factor 2 (ADF 2) (GB:Q9FVI1); similar to actin-depolymerizing factor [Platanus x acerifolia] (GB:CAL25339.1); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108)

At3g54870.1 At3g54870.1 31.1 cell.organisation microtubule

MRH2 (morphogenesis of root hair 2);chloroplast motor Armadillo-repeat containing kinesin-related protein. Plays a role during transition to root-hair tip growth. similar to PAK (PHOSPHATIDIC ACID KINASE), microtubule motor [Arabidopsis thaliana] (TAIR:AT1G12430.1); similar to Os03g0152900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048996.1); similar to Kinesin motor domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94031.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Kinesin, motor

At5g37590.1 At5g37590.1 31.1 cell.organisation cellular_component_unknown

binding similar to SPY (SPINDLY), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G11540.1); similar to Krm protein [Lotus japonicus] (GB:CAA73365.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)

At4g26110.1 At4g26110.1 +1 28.1 DNA.synthesis/chromatin structure plasma membrane, nucleus, cytoplasm

NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding similar to NAP1,3 (NUCLEOSOME ASSEMBLY PROTEIN1,3), DNA binding [Arabidopsis thaliana] (TAIR:AT5G56950.1); similar to nucleosome assembly protein I-like protein; similar to mouse nap I, PIR Accession Number JS0707 (GB:AAA50234.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017); contains InterPro domain Nucleosome assembly protein (NAP); (InterPro:IPR002164)

At4g32700.2 At4g32700.2 28.1 DNA.synthesis/chromatin structure protein| similar to nucleus, cytoplasm

DNA-directed DNA polymerase family plasma membrane,DNA helicase HEL308 (Homo sapiens) GI:19110782; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00476: DNA polymerase family A

At1g09200.1 At1g09200.1 +10 28.1.3 DNA.synthesis/chromatin structure.histone nucleosome, nucleus, chloroplast

histone H3 Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10400.1); similar to Histone H3.2 (GB:P68427); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124)

At3g46030.1 +2

At3g46030.1, At3g45980.1, At5g9910.1 28.1.3 DNA.synthesis/chromatin structure.histone nucleus

histone H2B, putative Identical to Histone H2B.7 (HTB11) [Arabidopsis Thaliana] (GB:Q9LZT0); Identical to Histone H2B.6 (HTB9) (H2BAt) (H2B) [Arabidopsis Thaliana] (GB:O23629); Identical to Histone H2B.11 (HTB4) [Arabidopsis Thaliana] (GB:P40283;GB:Q5PP00;GB:Q8LDE5;GB:Q9FJE5); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterP

At1g07660.1, At1g07660.2 At1g07660.1 +8 28.1.3 // 31.1 chloroplast, plasma (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59970.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G53730.1); similar to histone H4 [Nicotiana tabacum] (GB:BAF36442.1); similar to Os01g0835900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044729.1); similar to Histone H4 homologue [Sesbania rostrata] (GB:CAB01913.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPr

DNA.synthesis/chromatin structure.histone // cell.organisation histone H4 Identical to Histone H4 [Arabidopsis Thaliana] membrane

At1g07660.1, At1g07660.2 At1g07660.1 +8 28.1.3 // 31.1 chloroplast, plasma (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59970.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G53730.1); similar to histone H4 [Nicotiana tabacum] (GB:BAF36442.1); similar to Os01g0835900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044729.1); similar to Histone H4 homologue [Sesbania rostrata] (GB:CAB01913.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPr

DNA.synthesis/chromatin structure.histone // cell.organisation histone H4 Identical to Histone H4 [Arabidopsis Thaliana] membrane

At1g07660.1, At1g07660.2 At1g07660.1 +8 28.1.3 // 31.1 chloroplast, plasma (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59970.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G53730.1); similar to histone H4 [Nicotiana tabacum] (GB:BAF36442.1); similar to Os01g0835900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044729.1); similar to Histone H4 homologue [Sesbania rostrata] (GB:CAB01913.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPr

DNA.synthesis/chromatin structure.histone // cell.organisation histone H4 Identical to Histone H4 [Arabidopsis Thaliana] membrane

At1g55130.1 At1g55130.1 28.99 DNA.unspecified Golgi

endomembrane protein 70, putative similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G25100.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G10840.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT3G13772.1); similar to putative PHG1A protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10383.1); similar to putative PHG1A protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54580.1); similar to Nonaspanin (TM9SF) [Medicago truncatula] (GB:ABE93901.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240)

At4g34490.1 At4g34490.1 28.99 DNA.unspecified actin CYCLASE ASSOCIATED PROTEIN similar to adenylyl cyclase associated protein [Gossypium hirsutum] (GB:BAA36585.1); similar to CAP protein [Medicago truncatula] (GB:ABE87946.1); contains InterPro domain Cyclase-associated protein; (InterPro:IPR006599); contains InterPro domain CAP protein; (InterPro:IPR001837)

ATCAP1 (CYCLASE ASSOCIATED PROTEIN 1)cytoskeleton organization

At5g17380.1 At5g17380.1 5.02 fermentation.PDC cellular_component_unknown

pyruvate decarboxylase family protein similar to CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) [Arabidopsis thaliana] (TAIR:AT3G48560.1); similar to Os01g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043144.1); similar to COG0028: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Escherichia coli E24377A] (GB:ZP_00700406.1); similar to thiamine pyrophosphate enzyme-like TPP binding re (GB:ZP_01503010.1); contains InterPro domain Thiamine pyrophosphate enzyme, N-terminal TPP bind

At3g52930.1 At3g52930.1 4.07 glycolysis.aldolase cell similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT2G36460.1); similar to Fructose-bisphosphate aldolase, class-I [Medicago truncatula] (GB:ABE84500.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741)

fructose-bisphosphate aldolase, putative wall, plasma membrane, chloroplast, cytosol, apoplast, mitochondrion, nucleolus

At3g23150.1 At3g23150.1 17.5.2 hormone metabolism.ethylene.signal transduction endoplasmic ethylene membrane

ETR2 (ETHYLENE RESPONSE 2); receptor Involved inreticulum perception in Arabidopsis similar to EIN4 (ETHYLENE INSENSITIVE 4) [Arabidopsis thaliana] (TAIR:AT3G04580.2); similar to ethylene receptor [Fragaria x ananassa] (GB:CAC48386.1); similar to ethylene receptor [Pyrus pyrifolia] (GB:BAD61003.1); similar to ethylene receptor [Brassica oleracea] (GB:BAB84007.2); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082

At5g19440.1 At5g19440.1 26.11 misc.alcohol dehydrogenases plasma membrane

cinnamyl-alcohol dehydrogenase, putative (CAD) similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase similar to cinnamyl-alcohol dehydrogenase, putative (CAD) [Arabidopsis thaliana] (TAIR:AT1G51410.1); similar to putative cinnamyl alcohol dehydrogenase [Malus x domestica] (GB:AAC06319.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509)

At5g45340.1 At5g45340.1 +1 26.10 misc.cytochrome P450 endomembrane polypeptide 3); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. similar to CYP707A1 (cytochrome P450, family 707, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G19230.1); similar to ABA 8'-hydroxylase CYP707A1 [Solanum tuberosum] (GB:ABA55732.1); similar to (+)-abscisic acid 8'-hydr

CYP707A3 (cytochrome P450, family 707, subfamily A,system

At3g04290.1 At3g04290.1 26.28 misc.GDSL-motif lipase carboxylic ester hydrolase similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G33370.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087)

ATLTL1/LTL1 (LI-TOLERANT LIPASE 1);endomembrane system

At5g48375.1 At5g48375.1 26.03 misc.gluco-, galacto- and mannosidases endomembrane system

TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3); hydrolase, hydrolyzing O-glycosyl compounds Is a myrosinase pseudogene that codes for a truncated and frameshifted protein. Although TGG3 apparently is a pseudogene, its mRNA is expressed specifically in stamen and petal according to RT-PCR analysis. Western analysis shows no band of the size expected for a TGG3 protein. similar to TGG2 (GLUCOSIDE GLUCOHYDROLASE 2), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G25980.2); similar to myrosinase [Armoracia rusticana] (GB:AAV71147.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPr

At1g22840.1 At1g22840.1 +1 9.6 mitochondrion

mitochondrial electron transport / ATP synthesis.cytochrome c ATCYTC-A/CYTC-1 (CYTOCHROME C-1); electron carrier Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers. Identical to Probable cytochrome c At1g22840 [Arabidopsis Thaliana] (GB:O23138); similar to CYTC-2 (CYTOCHROME C-2), electron carrier [Arabidopsis thaliana] (TAIR:AT4G10040.1); similar to Cytochrome c (GB:P62772); contains InterPro domain Cytochrome c, monohaem; (InterPro

At3g17820.1 At3g17820.1 12.2.02 N-metabolism.ammonia metabolism.glutamine synthase cytosol, chloroplast, plasma membrane

ATGSKB6 (Arabidopsis thaliana glutamine synthase clone KB6); glutamate-ammonia ligase encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium Identical to Glutamine synthetase cytosolic isozyme 1-3 (EC 6.3.1.2) (GLN1;3) (Glutamate--ammonia ligase GLN1;3) (GS1) (GLN1-3) [Arabidopsis Thaliana] (GB:Q9LVI8;GB:Q5PNX0;GB:Q84W44); similar to ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G37600.1); similar to ATGSR2 (Arabidopsis thaliana glutamine synthase clone R2), glutamate-ammonia ligase [Arabidopsis thaliana] (T

At5g35630.1 At5g35630.1 +2 12.2.02 N-metabolism.ammonia metabolism.glutamine synthase chloroplast

GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammonia ligase chloroplastic glutamine synthetase Identical to Glutamine synthetase, chloroplast/mitochondrial precursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (GS2) (GLN2) [Arabidopsis Thaliana] (GB:Q43127); similar to ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G37600.1); similar to ATGSR2 (Arabidopsis thaliana glutamine synthase clone R2), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT1G66200.1); similar to GLN1,4 (Glutamine synthetase 1,4), glutamate-ammonia ligase [Arabidopsis thaliana] (TAI

At5g37600.1 At5g37600.1 12.2.02 N-metabolism.ammonia metabolism.glutamine synthase cell wall, plasma membrane, cytosol, chloroplast

ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1); glutamate-ammonia ligase encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium Identical to Glutamine synthetase cytosolic isozyme 1-1 (EC 6.3.1.2) (GLN1;1) (Glutamate--ammonia ligase GLN1;1) (GLN1-1) [Arabidopsis Thaliana] (GB:Q56WN1;GB:Q9FHR0); similar to ATGSKB6 (Arabidopsis thaliana glutamine synthase clone KB6), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT3G17820.1); similar to ATGSR2 (Arabidopsis thaliana glutamine synthase clone R2), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT1G66200.

At3g16640.1 At3g16640.1 35.1 not assigned.no ontology plasma membrane, Encodes a apoplast, nucleus, cytoplasm

TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)chloroplast,protein homologous to TRANSCRIPTIONALLY CONTROLLED TUMOR PROTEIN (TCTP). Identical to Translationally-controlled tumor protein homolog (TCTP) (TCTP) [Arabidopsis Thaliana] (GB:P31265;GB:Q8L973;GB:Q9LUS0); similar to translationally controlled tumor family protein [Arabidopsis thaliana] (TAIR:AT3G05540.1); similar to Translationally-controlled tumor protein homolog (TCTP) (GB:Q944W6); contains InterPro domain Translationally controlled tumor protein; (InterPro:IPR001983); contains InterPro domain Mss4-like; (InterPro:IPR011057)

At3g16640.1 At3g16640.1 35.1 not assigned.no ontology plasma membrane, Encodes a apoplast, nucleus, cytoplasm

TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)chloroplast,protein homologous to TRANSCRIPTIONALLY CONTROLLED TUMOR PROTEIN (TCTP). Identical to Translationally-controlled tumor protein homolog (TCTP) (TCTP) [Arabidopsis Thaliana] (GB:P31265;GB:Q8L973;GB:Q9LUS0); similar to translationally controlled tumor family protein [Arabidopsis thaliana] (TAIR:AT3G05540.1); similar to Translationally-controlled tumor protein homolog (TCTP) (GB:Q944W6); contains InterPro domain Translationally controlled tumor protein; (InterPro:IPR001983); contains InterPro domain Mss4-like; (InterPro:IPR011057)

At3g49890.1 At3g49890.1 35.1 not assigned.no ontology cellular_component_unknown

similar to hypothetical protein MtrDRAFT_AC147000g8v1 [Medicago truncatula] (GB:ABE85871.1)

At4g23630.1 At4g23630.1 35.1 not assigned.no ontology vacuole, to BTI2 (VIRB2-INTERACTING PROTEIN 2)

BTI1 (VIRB2-INTERACTING PROTEIN 1) similar endoplasmic reticulum, plasma membrane[Arabidopsis thaliana] (TAIR:AT4G11220.1); similar to Os05g0526400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056102.1); similar to Os01g0736900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044177.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB32723.1); contains InterPro domain Reticulon; (InterPro:IPR003388)

At5g03430.1 At5g03430.1 35.1 not assigned.no ontology cellular_component_unknown

phosphoadenosine phosphosulfate (PAPS) reductase family protein similar to Os01g0259600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042640.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81409.1); contains InterPro domain Phosphoadenosine phosphosulfate reductase; (InterPro:IPR002500); contains InterPro domain Molybdopterin binding domain; (InterPro:IPR001453)

At5g23680.1 At5g23680.1 35.1 not assigned.no ontology cellular_component_unknown

sterile alpha motif (SAM) domain-containing protein similar to sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G48800.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO20060.1); similar to Os03g0850300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051905.1); contains InterPro domain Sterile alpha motif-type; (InterPro:IPR013761); contains InterPro domain Sterile alpha motif SAM; (InterPro:IPR001660); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993)

At1g03910.2 At1g03910.2 35.1 not assigned.no ontology cellular_component_unknown

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37540.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958)

At1g44120.1 At1g44120.1 35.1.19 not assigned.no ontology.C2 domain-containing protein cellular_component_unknown

C2 domain-containing protein / armadillo/beta-catenin repeat family protein similar to C2 domain-containing protein / armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G77460.1); similar to binding [Arabidopsis thaliana] (TAIR:AT2G22125.1); similar to Armadillo/beta-catenin-like repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91813.2); similar to C2 domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95026.1); similar to C2 [Medicago truncatula] (GB:ABE94518.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like h

At5g07650.1 At5g07650.1 35.1.20 formin homology 2 domain-containing protein / FH2 domain-containing protein similar to formin homology 2 domain-containing protein / FH2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G07760.1); similar to putative diaphanous homologue [Oryza sativa (japonica cultivar-group)] (GB:BAC55695.1); similar to Os07g0596300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060171.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104)

not assigned.no ontology.formin homology 2 domain-containing protein chloroplast

At3g16890.1 At3g16890.1 35.1.5 pentatricopeptide (PPR) repeat-containing protein similar to EMB2745 (EMBRYO DEFECTIVE 2745), binding [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99576.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)

not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein mitochondrion

At1g73390.1 +4

At1g73390.1, At1g73390.3, At1g73390.4, At1g17940.1 35.2 not assigned.unknown cellular_component_unknown

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17940.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23062.1); contains domain PCD6 INTERACTING PROTEIN-RELATED (PTHR23030)

At2g27280.1 At2g27280.1 35.2 not assigned.unknown cellular_component_unknown

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27285.1); similar to Os04g0440000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052872.1); similar to OJ000114_01.13 [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL50553.1)

At2g37660.1 At2g37660.1 +1 35.2 not assigned.unknown to Protein At2g37660,

catalytic/ coenzyme binding Identical chloroplast, apoplast chloroplast precursor [Arabidopsis Thaliana] (GB:O80934;GB:Q94B61); similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT5G02240.1); similar to Os05g0110300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054439.1); similar to Os03g0822200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051733.1); similar to similar to Nucleoside-diphosphate-sugar epimerases [Crocosphaera watsonii WH 8501] (GB:ZP_00516553.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509)

At2g45990.1, At2g45990.2 At2g45990.1 +3 35.2 not assigned.unknown chloroplast

similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80178.1); contains domain no description (G3D.3.40.50.1000); contains domain HAD-like (SSF56784)

At3g16040.1 At3g16040.1 35.2 not assigned.unknown cellular_component_unknown

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15270.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77733.1)

At5g65540.1 At5g65540.1 35.2 not assigned.unknown FLOWERING TIME 1) [Arabidopsis thaliana] (TAIR:AT1G25540.2); similar to hypothetical protein [Trifolium pratense] (GB:BAE71249.1)

similar to PFT1 (PHYTOCHROME ANDcellular_component_unknown

At1g63660.1, At1g3660.2 At1g63660.1 +1 23.1.2.031 nucleotide metabolism.synthesis.purine.GMP synthetase cellular_component_unknown

GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative similar to GMP synthase (ISS) [Ostreococcus tauri] (GB:CAL58135.1); similar to Os08g0326600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061552.1); similar to GMP synthetase [Chlamydomonas reinhardtii] (GB:AAO45104.1); contains InterPro domain tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; (InterPro:IPR004506); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain GMP synthase, C-terminal; (InterPro:IPR001674); contains InterPro domain Anthranilate synt

At3g50960.1 At3g50960.1 29.1 protein.aa activation nucleus, cytoplasm

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66410.1); similar to Os05g0255600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055035.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE84079.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335)

At3g11710.1 At3g11710.1 29.1.06 protein.aa activation.lysine-tRNA ligase cytoplasm

lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT3G13490.1); similar to Lysyl-tRNA synthetase, class-2; Aminoacyl-transfer RNA synthetase, class II [Medicago truncatula] (GB:ABE86616.1); similar to Lysyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97356.1); similar to Lysyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97357.1)

At1g09300.1, At1g09300.2 At1g09300.1 +1 29.5 protein.degradation similar to X-Pro

metallopeptidase M24 family protein mitochondrion dipeptidase [Arabidopsis thaliana] (TAIR:AT4G29490.1); similar to metallopeptidase family M24 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98962.2); similar to Os12g0563500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067037.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24B, X-Pro dipeptidase/aminopeptidase N-terminal; (InterPro:IPR007865); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714)

At2g36090.1 At2g36090.1 29.5.11.4.3.02 protein.degradation.ubiquitin.E3.SCF.FBOX biological_process_unknown

F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G27310.1); similar to Os11g0155100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065788.1); similar to H0622F05.2 [Oryza sativa (indica cultivar-group)] (GB:CAH66419.1); similar to OJ991214_12.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE01513.1); contains InterPro domain GPCR, family 2, secretin-like; (InterPro:IPR000832)

At2g31320.1 At2g31320.1 29.4 protein.postranslational modification nucleus

poly (ADP-ribose) polymerase, putative / NAD(+) ADP-ribosyltransferase, putative / poly(ADP-ribose) synthetase, putative Identical to Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1) (ADPRT 1) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) (PARP1) [Arabidopsis Thaliana] (GB:Q9ZP54;GB:Q9SJW4); similar to NAD+ ADP-ribosyltransferase [Arabidopsis thaliana] (TAIR:AT5G22470.1); similar to Poly [ADP-ribose] polymerase 1 (PARP-1) (ADPRT 1) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) (GB:Q9ZSV1); similar to poly(ADP-ribose) synthetase (GB:AAB59447.1); similar to poly(ADP-ribose) pol

At1g07920.1 At1g07920.1 +7 29.2.4 protein.synthesis.elongation Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A)

elongation factor 1-alpha / EF-1-alphamitochondrion, plasma membrane, nucleolus, chloroplast (A4) [Arabidopsis Thaliana] (GB:P13905); similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT5G60390.1); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT1G07930.1); similar to elongation factor-1 alpha [Nicotiana tabacum] (GB:BAA09709.1); similar to Elongation factor 1-alpha (EF-1-alpha) (GB:P17786); similar to elongation factor 1 alpha [Stevia rebaudiana] (GB:AAN77897.1); con

At1g07920.1 At1g07920.1 +7 29.2.4 protein.synthesis.elongation Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A)

elongation factor 1-alpha / EF-1-alphamitochondrion, plasma membrane, nucleolus, chloroplast (A4) [Arabidopsis Thaliana] (GB:P13905); similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT5G60390.1); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT1G07930.1); similar to elongation factor-1 alpha [Nicotiana tabacum] (GB:BAA09709.1); similar to Elongation factor 1-alpha (EF-1-alpha) (GB:P17786); similar to elongation factor 1 alpha [Stevia rebaudiana] (GB:AAN77897.1); con

At1g41880.1, At3g55750.1 At1g41880.1 +1 29.2.2 protein.synthesis.misc ribososomal protein Identical to 60S ribosomal protein

60S ribosomal protein L35a (RPL35aB)cytosolic large ribosomal subunit L35a-4 (RPL35AD) [Arabidopsis Thaliana] (GB:P51422;GB:Q9M049); Identical to 60S ribosomal protein L35a-2 (RPL35AB) [Arabidopsis Thaliana] (GB:Q9FZH0); similar to 60S ribosomal protein L35a (RPL35aD) [Arabidopsis thaliana] (TAIR:AT3G55750.1); similar to ribosomal protein L33 [Castanea sativa] (GB:AAK25760.1); contains InterPro domain Ribosomal protein L35Ae; (InterPro:IPR001780)

At3g25520.1 At3g25520.1 +1 29.2.2 protein.synthesis.misc ribososomal protein nucleus,plasma membrane, cytoplasm

ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); structural constituent of ribosome Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identical to 60S ribosomal protein L5-1 (ATL5) [Arabidopsis Thaliana] (GB:Q8LBI1;GB:Q940R7); similar to 60S ribosomal protein L5 (RPL5B) [Arabidopsis thaliana] (TAIR:AT5G39740.1); similar to 60S ribosomal protein L5 (GB:Q6UNT2); contains InterPro domain Ribosomal protein L18P/L5E; (InterPro:IPR005484); contains InterPro domain Eukaryotic ribosomal protein L5; (InterPro:IPR005485)

At1g73430.1, At1g7430.2 At1g73430.1 +1 29.3.4.2 protein.targeting.secretory pathway.golgi cis-Golgi network, chloroplast

sec34-like family protein similar to Subunit of cis-Gol (GB:CAL52453.1); similar to Os08g0451000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061944.1); contains InterPro domain Sec34-like protein; (InterPro:IPR007265)

At3g51310.1 At3g51310.1 29.3.4.3 protein.targeting.secretory pathway.vacuole membrane

vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75850.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17790.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF93242.1); similar to Os03g0801600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051593.1); contains InterPro domain Vacuolar protein sorting-associated protein 35; (InterPro:IPR005378)

At2g21330.1, At2g21330.2 At2g21330.1 +2 1.3.06 PS.calvin cyle.aldolase apoplast, chloroplast

fructose-bisphosphate aldolase, putative similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-like protein [Hevea brasiliensis] (GB:AAM46780.1); similar to plastidic aldolase [Nicotiana paniculata] (GB:BAA77603.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741)

At1g12900.1 At1g12900.1 +3 1.3.04 PS.calvin cyle.GAP dehydrogenase similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to glyceraldehyde-3-phosphate dehydrogenase A subunit [Glycine max] (GB:ABA86963.1); similar to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (GB:P19866); similar to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (

GAPA-2; glyceraldehyde-3-phosphate chloroplast

At1g56190.1, At1g56190.2 At1g56190.1 +2 1.3.03 PS.calvin cyle.phosphoglycerate kinase mitochondrion, chloroplast

phosphoglycerate kinase, putative similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to chloroplast phosphoglycerate kinase [Populus nigra] (GB:BAA33803.1); similar to Phosphoglycerate kinase [Medicago truncatula] (GB:ABE80998.1); similar to Phosphoglycerate kinase, chloroplast precursor (GB:P50318); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576)

At1g56190.1, At1g56190.2 At1g56190.1 +2 1.3.03 PS.calvin cyle.phosphoglycerate kinase mitochondrion, chloroplast

phosphoglycerate kinase, putative similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to chloroplast phosphoglycerate kinase [Populus nigra] (GB:BAA33803.1); similar to Phosphoglycerate kinase [Medicago truncatula] (GB:ABE80998.1); similar to Phosphoglycerate kinase, chloroplast precursor (GB:P50318); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576)

At3g12780.1 At3g12780.1 1.3.03 // 4.1 PGK1 kinase apoplast, chloroplast, nucleus, cytoplasm, mitochondrion, cell wall

PS.calvin cyle.phosphoglycerate kinase // glycolysis.phosphoglycerate(PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase nuclear phosphoglycerate kinase (PGK1) similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR:AT1G56190.1); similar to chloroplast phosphoglycerate kinase [Populus nigra] (GB:BAA33803.1); similar to Phosphoglycerate kinase [Medicago truncatula] (GB:ABE80998.1); similar to Phosphoglycerate kinase, chloroplast precursor (GB:P50318); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576)

At2g39730.1, At2g39730.2 At2g39730.1 +2 1.3.013 PS.calvin cyle.rubisco interacting chloroplast, apoplast, nucleus, cell wall

RCA (RUBISCO ACTIVASE) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco. Identical to Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) (RCA) [Arabidopsis Thaliana] (GB:P10896;GB:Q39197;GB:Q39198;GB:Q940T8); similar to ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative [Arabidopsis thaliana] (TAIR:AT1G73110.1); similar to chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase activase large protein isofor

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

At1g67090.1, At1g67090.2 At1g67090.1 +5 1.3.02 PS.calvin cyle.rubisco small subunit chloroplast, apoplast, small subunit 1A (RBCS-1A) (ATS1A) Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana] (GB:P10795;GB:Q94JW2;GB:Q9FPI6;GB:Q9SAV4); similar to ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) [Arabidopsis thaliana] (TAIR:AT5G38430.1); similar to ribulose-1,5-bisphosphate carboxylase /oxygenase, small subunit; ribulose-bisphosphate carboxylase [Brassica napus] (GB:CAA53083.1); similar to Ribulose bisphosphate carbo

ribulose bisphosphate carboxylase small chain 1A / RuBisCO thylakoid

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685)

large subunit of RUBISCO. Identical tochloroplast

AtCg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose

eins.



peptide Number of acetylated-K number of spectra tissue iprob ions calc_mass z exp_mass MZratio pI

protein_descr

R.K(ac)VLISGSIHYPR.S 1 1 leaf 0.98727 21/22 1410.8 3 1411.09 471.273 9.99

| Symbols: BGAL8 | BGAL8 (beta-galactosidase 8); beta-galactosidase\ catalytic\ cation binding \ sugar binding | chr2:12169047-12173164 REVERSE

M.ASSDK(ac)QTSPKPPPSPSPLR.N 1 1 cc 0.99985 17/36 2018.05 3 2018.05 673.689 | UXS5; UDP-glucuronate decarboxylase\ catalytic | chr3:17089268-17091611 REVERSE

| Symbols: UXS5 9.99

M.SFNK(ac)VPNIPGAPALSALLK.V 1 1 cc 0.99821 17/36 1978.13 2 1978.13 990.07 |

| Symbols: ATPHB210ATPHB2 (PROHIBITIN 2) | chr1:979611-981157 REVERSE

K.DC(ca)VGGPSSK(ac)FIVK.D 1 3 leaf 0.59121 12/24 1434.72 2 1434.69 718.366 8.2

| Symbols: ATCYP59, CYP59 | CYP59 (CYCLOPHILIN 59); RNA binding \ nucleic acid binding \ peptidyl-prolyl cis-trans isomerase | chr1:20057012-20059508 FORWARD

K.QLQDMENVMVSFVSAK(ac)TK(ac)ATETLR.G 2 1 cc 0.86577 23/46 2809.4 3 2809.41 937.474 6.18

| Symbols: | kinesin motor protein-related | chr2:12265167-12270020 REVERSE

K.M(ox)IPYIIIALTDGK(ac)M(ox)GAEGR.K 1 1 cc 0.99939 12/36 2122.08 2 2122.08 1062.05 5.82

| Symbols: MOR1, GEM1 | MOR1 (MICROTUBULE ORGANIZATION 1); microtubule binding | chr2:14966828-14980361 FORWARD

R.ELDGIQVELQATDPTEM(ox)GLDVFK(ac)SR.T 1 1 cc 0.99982 19/48 2848.38 3 2848.38 950.468 | ADF2

| Symbols: ADF2 4.02 (ACTIN DEPOLYMERIZING FACTOR 2); actin binding | chr3:16907743-16908822 REVERSE

K.K(ac)LEGENAR.S 1 1 cc 0.99954 10/14 957.489 2 957.487 479.752 6.14

| Symbols: MRH2, ARK1, CAE1 | MRH2 (MORPHOGENESIS OF ROOT HAIR 2); actin binding \ microtubule binding \ microtubule motor | chr3:20330806-20335823 FORWARD

R.IAK(ac)DVLHK.L 1 1 cc 0.9953 09/14 964.571 2 964.579 483.293 8.6

| Symbols: | binding | chr5:14927403-14932709 REVERSE

M.SNDK(ac)DSFNVSDLTAALKDEDR.A 1 8 cc 1 37/40 2381.1 3 2381.1 794.707 4.17

| Symbols: NAP1;1, ATNAP1;1 | NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding | chr4:13232712-13235502 FORWARD

K.K(ac)VLLC(ca)EENR.G 1 9 leaf 0.99054 4/16 1201.61 2 1201.62 601.814 6.14

| Symbols: | DNA-directed DNA polymerase family protein | chr4:15767440-15779185 FORWARD

R.K(ac)STGGK(ac)APR.K 2 6 leaf, nucl 0.99962 13/16 984.536 2 984.525 493.275 11.17

| Symbols: | histone H3 | chr1:2971722-2972132 REVERSE

K.SKAEK(ac)APAEKK(ac)PK.A 2 3 leaf 0.99998 21/24 1494.84 3 1495.3 499.288 9.82

| Symbols: HTB11 | HTB11; DNA binding | chr3:16913614-16914051 REVERSE

K.GLGK(ac)GGAK(ac)R.H 2 10 leaf, nucl 0.99999 14/16 926.529 2 926.523 464.272 11.17

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD

K.GGK(ac)GLGK(ac)GGAK(ac)R.H 3 18 leaf, nucl, pl, mit 0.98631 16/22 1210.68 2 1210.69 606.346 11.26

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD

K.GGK(ac)GLGK(ac)GGAK.R 2 1 nucl 0.99538 16/20 1012.57 2 1012.47 507.29 10.3

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD

R.VGFKGSYEGSK(ac)EK(ac)K.Y 2 1 leaf 0.95065 14/26 1626.83 2 1626.48 814.42 9.4

| Symbols: | endomembrane protein 70, putative | chr1:20569654-20572266 FORWARD

-.MEEDLIK(ac)RLEAAVTRLEGISSNGGGVVSLSR.G 1 3 cc 0.99823 73/180 3327.75 4 3327.75 832.944 CAP

| Symbols: ATCAP1, 5 1, CAP1 | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1); actin binding | chr4:16484896-16487355 REVERSE

M.ADK(ac)SETTPPSIDGNVLVAK.S 1 5 cc 0.99993 18/36 1983.02 2 1983.01 992.516 4.56

| Symbols: | pyruvate decarboxylase family protein | chr5:5724920-5726720 REVERSE

M.SAFTSK(ac)FADELIANAAYIGTPGK.G 1 17 cc 1 21/44 2413.22 2 2413.22 1207.62 5.79

| Symbols: | fructose-bisphosphate aldolase, putative | chr3:19627383-19628874 REVERSE

K.RQEGSSLM(ox)FK(ac)VLK.E 1 1 leaf 0.47593 12/24 1579.84 2 1579.56 790.927 9.99

| Symbols: ETR2 | ETR2 (ethylene response 2); ethylene binding \ glycogen synthase kinase 3\ protein histidine kinase\ receptor | chr3:8255156-8257560 FORWARD

M.ANSGEGK(ac)VVC(ca)VTGASGYIASWLVK.F 1 9 cc 0.99877 24/46 2494.25 3 2494.26 832.424 8.22

| Symbols: | cinnamyl-alcohol dehydrogenase, putative (CAD) | chr5:6556493-6558123 FORWARD

K.TYTFNVALISILGK(ac)DEVYYREDLK.R 1 1 mit 0.65505 21/46 2891.5 4 2891.97 723.881 4.78

| Symbols: CYP707A3 | CYP707A3; (+)-abscisic acid 8'-hydroxylase\ oxygen binding | chr5:18368977-18370909 REVERSE

R.K(ac)LYELGAR.R 1 1 leaf 0.45502 4/14 990.55 2 990.485 496.282 8.59

| Symbols: ATLTL1, LTL1 | LTL1 (LI-TOLERANT LIPASE 1); carboxylesterase\ hydrolase, acting on ester bonds | chr3:1133620-1136223 REVERSE

R.VK(ac)K(ac)WITINQLYTVPTR.G 2 1 leaf 0.82615 21/30 2043.15 3 2044.18 682.058 10.29

| Symbols: TGG3, BGLU39 | TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3); hydrolase, hydrolyzing O-glycosyl compounds \ thioglucosidase | chr5:19601303-19603883 REVERSE

K.ALYDYLLNPK(ac)K.Y 1 2 mit 1 15/20 1378.75 2 1380.65 690.382 8.47

| Symbols: CYTC-1, ATCYTC-A | CYTC-1 (CYTOCHROME C-1); electron carrier\ heme binding \ iron ion binding | chr1:8079384-8080286 FORWARD

M.SLLSDLVNLNLTDATGK(ac)IIAEYIWIGGSGMDIR.S 1 6 cc 1 16/64 3589.87 3 3589.87 1197.63 4.23

| Symbols: ATGSKB6, GLN1.3, GLN1;3 | ATGSKB6; copper ion binding \ glutamate-ammonia ligase | chr3:6097503-6099408 FORWARD

K.WPLGWPVGAFPGPQGPYYC(ca)GVGADK(ac)IWGR.D 1 20 leaf 1 36/56 3229.56 3 3229.57 1077.53 8.18

| Symbols: GS2, GLN2, ATGSL1 | GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammonia ligase | chr5:13831220-13833239 FORWARD

M.SLVSDLINLNLSDSTDK(ac)IIAEYIWVGGSGMDMR.S 1 1 cc 0.99952 18/64 3653.79 3 3653.8 1218.94 4.04

| Symbols: ATGSR1, GLN1;1, GSR 1 | ATGSR1; copper ion binding \ glutamate-ammonia ligase | chr5:14933574-14935656 REVERSE

R.LQEQPTYDK(ac)K.G 1 7 leaf 1 14/18 1290.65 2 1290.6 646.331 6.07

| Symbols: TCTP | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) | chr3:5669709-5670729 REVERSE

K.LSEEDQAVFK(ac)K.G 1 3 leaf 1 17/20 1334.67 2 1334.65 668.344 4.68

| Symbols: TCTP | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) | chr3:5669709-5670729 REVERSE

K.K(ac)LTHGQIKVK.N 1 2 leaf 0.61558 10/18 1192.73 2 1192.47 597.372 10.3

| Symbols: | unknown protein | chr3:18499296-18500501 FORWARD

M.AEEHK(ac)HDESVIAPEPAVEVVER.E 1 1 cc 1 28/42 2511.23 3 2511.22 838.083 BTI1

| Symbols: BTI1 |4.53 (VIRB2-INTERACTING PROTEIN 1) | chr4:12318070-12319574 FORWARD

K.K(ac)LTSVGWSVQQTTVLR.N 1 40 leaf 0.96768 10/30 1844.02 2 1844.03 923.015 11

| Symbols: | phosphoadenosine phosphosulfate (PAPS) reductase family protein | chr5:849237-852867 REVERSE

K.SSGGETAATTTTNTASAK(ac)R.V 1 1 leaf 1 19/36 1852.88 2 1854.93 927.446 8.46

| Symbols: | sterile alpha motif (SAM) domain-containing protein | chr5:7985573-7986460 REVERSE

K.K(ac)LLQMKR.M 1 12 leaf 0.99986 12/12 957.58 2 957.597 479.797 11.17

| Symbols: | EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN\s: Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11516 Blast hits to 6722 proteins in 356 species: Archae - 23; Bacteria - 259; Metazoa - 6122; Fungi - 1009; Plants - 493; Viruses - 33; Other Eukaryotes - 3577 (source: NCBI BLink). | chr1:996432-1000231 FORWARD

K.QDK(ac)TVEGHLVGALR.N 1 4 cc 0.9901 07/26 1563.84 2 1563.84 782.926 6.75

| Symbols: | C2 domain-containing protein \ armadillo\beta-catenin repeat family protein | chr1:16780610-16787414 FORWARD

K.NK(ac)DAKEAEM(ox)EK.T 1 1 mit 0.21436 09/20 1349.61 2 1349.61 675.814 4.87

| Symbols: | formin homology 2 domain-containing protein \ FH2 domain-containing protein | chr5:2416375-2421814 REVERSE

K.K(ac)GVVDEAIR.L 1 8 cc 0.99887 16/16 1027.57 2 1027.58 514.79 6.07

| Symbols: PPR40 | PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40) | chr3:5768401-5770380 REVERSE

K.ATLAVK(ac)R.R 1 2 cc 0.88327 04/12 799.492 2 799.493 400.753 11

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN\s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17940.1); Has 95 Blast hits to 95 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 23; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27591079-27594148 REVERSE

R.EEHK(ac)SRYIQHIMKQAER.R 1 1 leaf 0.49467 23/32 2224.12 3 2226.31 742.38 8.6

| Symbols: | unknown protein | chr2:11673826-11675613 REVERSE

R.TGQIVYK(ac)K.L 1 1 leaf 0.61979 16/14 977.555 2 978.545 489.785 9.7

| Symbols: | binding \ catalytic\ coenzyme binding | chr2:15795481-15796977 REVERSE

R.FYPGVSDALK(ac)FASSK.I 1 3 leaf 0.99999 21/28 1657.83 2 1657.84 829.924 8.5

| Symbols: | unknown protein | chr2:18919402-18921043 FORWARD

M.SSK(ac)QGGK(ac)LK(ac)PLK.Q 3 5 leaf, nucl 0.99889 22/22 1395.81 3 1395.78 466.277 10.48

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN\s: Translation machinery associated TMA7 (InterPro:IPR015157); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15270.1); Has 264 Blast hits to 264 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 48; Pla

K.SLSK(ac)PSFTSGTR.G 1 1 nucl 0.84275 14/22 1308.67 2 1308.65 655.341 11

| Symbols: | unknown protein | chr5:26195710-26198112 FORWARD

-.METPTMK(ac)PDTVLILDYGSQYTHLITR.R 1 9 cc 1 22/50 3064.53 4 3064.52 767.139 5.36

| Symbols: | GMP synthase (glutamine-hydrolyzing), putative \ glutamine amidotransferase, putative | chr1:23604127-23607080 REVERSE

-.MDPDAVK(ac)STLSNLAFGNVMAAAAR.N 1 1 cc 1 26/46 2491.22 3 2491.23 831.413 | PLP3a (Phosducin-like protein 3 homolog); beta-tubulin binding | chr3:18938891-18940226 REVERSE

| Symbols: PLP3a5.71

-.MEGAADQTTK(ac)ALSELAMDSSTTLNAAESSAGDGAGPR.S 1 2 cc 1 32/72 3652.65 3 3652.65 1218.56 4.02

| Symbols: ATKRS-1 | ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1); ATP binding \ aminoacyl-tRNA ligase\ lysine-tRNA ligase\ nucleic acid binding \ nucleotide binding | chr3:3702359-3705613 REVERSE

K.SPAELK(ac)LMR.E 1 1 cc 0.99965 07/16 1085.59 2 1085.59 543.802 8.46

| Symbols: | metallopeptidase M24 family protein | chr1:3003981-3008131 FORWARD

R.SVM(ox)EGK(ac)R.V 1 1 mit 0.92702 05/12 863.417 2 863.43 432.716 8.46

| Symbols: | F-box family protein | chr2:15158631-15159584 FORWARD

R.VGNEK(ac)IGGNK(ac)VEEMSK.S 2 1 leaf 0.41285 11/30 1801.89 2 1802.08 901.951 | Symbols: PARP2,6.2 ATPARP2 | PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2); DNA binding \ NAD or NADH binding \ NAD+ ADP-ribosyltransferase\ zinc ion binding | chr2:13354046-13359578 REVERSE

R.GITIDIALWK(ac)FETTK.Y 1 15 leaf, nucl 1 19/28 1776.97 2 1776.96 889.491 6.07

| Symbols: | elongation factor 1-alpha \ EF-1-alpha | chr1:2455559-2457001 FORWARD

K.VGYNPDK(ac)IPFVPISGFEGDNM(ox)IER.S 1 3 leaf 1 13/92 2751.32 3 2751.36 918.114 4.32

| Symbols: | elongation factor 1-alpha \ EF-1-alpha | chr1:2455559-2457001 FORWARD

R.GTVLGYK(ac)R.S 1 2 leaf 0.99012 8/14 934.524 2 934.365 468.269 ribosomal protein L35a (RPL35aB) | chr1:15651585-15652427 REVERSE

| Symbols: | 60S 9.99

K.SNAYFK(ac)R.Y 1 7 leaf 0.75118 5/12 926.461 2 926.425 464.238 PGY3,

| Symbols: ATL5, 9.99 OLI5, RPL5A | ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); 5S rRNA binding \ structural constituent of ribosome | chr3:9269573-9271327 REVERSE

K.ASK(ac)LIIKR.S 1 1 cc 0.85564 04/14 969.634 2 969.64 485.824 11.17

| Symbols: | sec34-like family protein | chr1:27604096-27610829 FORWARD

-.MIADDDEK(ac)WLAAAIAAVK.Q 1 4 cc 1 15/68 1972 3 1972 658.34 4.23

| Symbols: VPS35C | VPS35C (VPS35 HOMOLOG C) | chr3:19044634-19049321 REVERSE

K.YTGEGESEEAKEGMFVK(ac)GYTY.- 1 16 leaf 1 29/40 2416.04 3 2416.03 806.354 4.33

| Symbols: | fructose-bisphosphate aldolase, putative | chr2:9128416-9130152 REVERSE

K.LNGIALRVPTPNVSVVDLVVQVSK(ac)K.T 1 1 leaf 0.95186 27/48 2686.57 3 2686.42 896.532 9.99

| Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding \ binding \ catalytic\ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)\ glyceraldehyde-3-phosphate dehydrogenase | chr1:4392634-4394283 REVERSE

K.GVTPK(ac)FSLAPLVPR.L 1 1 leaf 1 17/26 1522.89 2 1522.67 762.451 11

| Symbols: | phosphoglycerate kinase, putative | chr1:21028403-21030454 FORWARD

K.IGVIESLLEK(ac)C(ca)DILLLGGGMIFTFYK.A 1 2 leaf 1 34/50 2970.58 3 2970.97 991.202 4.68

| Symbols: | phosphoglycerate kinase, putative | chr1:21028403-21030454 FORWARD

R.LSELLGIEVTK(ac)ADDC(ca)IGPEVESLVASLPEGGVLLLENVR.F 1 1 leaf 1 41/76 4175.19 3 4175.59 1392.74 | PGK1

| Symbols: PGK1 3.94 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase | chr3:4061127-4063140 REVERSE

K.NFLTLPNIKVPLILGIWGGK(ac)GQGK.S 1 3 pl, leaf 1 39/46 2604.51 3 2604.4 869.179 RCA

| Symbols: RCA |10.3 (RUBISCO ACTIVASE); ADP binding \ ATP binding \ enzyme regulator\ ribulose-1,5-bisphosphate carboxylase\oxygenase activator | chr2:16570951-16573345 REVERSE

K.SQAETGEIKGHYLNATAGTC(ca)EEMIK(ac)R.A 1 2 leaf 0.99945 29/50 2935.38 3 2935.21 979.468 5.54

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

R.IPPAYTK(ac)TFQGPPHGIQVER.D 1 3 leaf 1 28/38 2277.19 3 2277.04 760.071 large

| Symbols: RBCL | 8.6 subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.GHYLNATAGTC(ca)EEMIK(ac)R.A 1 3 leaf 1 26/32 1991.92 3 1991.8 664.981 6.75

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.WSPELAAAC(ca)EVWK(ac)EITFNFPTIDKLDGQE.- 1 15 leaf 0.84623 26/56 3435.64 3 3435.64 1146.22 4.25

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.AGVKEYK(ac)LTYYTPEYETK.D 1 3 leaf 0.79119 24/34 2224.1 3 2223.94 742.372 6.27

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.ASVGFK(ac)AGVK.E 1 1 pl 0.98221 14/18 1004.56 2 1005.47 503.289 10

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.YGRPLLGC(ca)TIK(ac)PK.L 1 3 pl, leaf 1 27/24 1543.86 3 1543.84 515.626 9.79

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

R.YWTMWK(ac)LPLFGC(ca)TDSAQVLK.E 1 8 leaf, pl 0.96444 23/38 2485.22 3 2485.24 829.413 8.18

| Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A); copper ion binding \ ribulose-bisphosphate carboxylase | chr1:25048465-25049249 REVERSE

K.AGVK(ac)EYK.L 1 1 leaf 0.99706 13/12 835.444 2 835.444 418.729 8.54

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.EYK(ac)LTYYTPEYETK.D 1 2 leaf 1 19/26 1868.87 2 1868.86 935.444 4.79

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.GHYLN(da)ATAGTC(ca)EEMIK(ac)R.A 1 7 leaf 0.99629 20/64 1992.9 3 1992.91 665.308 6.75

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.GHYLN(da)ATAGTC(ca)EEMIK(ac)R.A 1 1 leaf 0.97911 14/32 1992.9 2 1992.91 997.459 6.75

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.LTYYTPEYETK(ac)DTDILAAFR.V 1 1 leaf 0.99999 10/38 2451.18 2 2451.18 1226.6 4.32

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.LTYYTPEYETK(ac)DTDILAAFR.V 1 1 leaf 0.9652 20/38 2451.19 3 2451.18 818.069 4.32

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.SQAETGEIK(ac)GHYLNATAGTC(ca)EEMIKR.A 1 1 leaf 1 31/50 2935.38 3 2935.38 979.468 5.54

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.SQAETGEIKGHYLN(da)ATAGTC(ca)EEMIK(ac)R.A 1 5 leaf 0.99991 36/100 2936.36 3 2936.38 979.796 5.54

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.YGRPLLGC(ca)TIK(ac)PKLGLSAK.N 1 1 leaf 1 19/36 2113.21 4 2113.22 529.309 10.03

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.YGRPLLGC(ca)TIKPK(ac)LGLSAK.N 1 1 leaf 1 24/36 2113.21 3 2113.21 705.41 10.03

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

R.DDYVEK(ac)DR.S 1 1 leaf 0.99998 5/14 1080.47 2 1080.47 541.244 4.23

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

R.ESTLGFVDLLRDDYVEK(ac)DR.S 1 1 leaf 0.99807 15/36 2311.13 2 2311.14 1156.57 4.23

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

R.IPPAYTK(ac)TFQGPPHGIQVER.D 1 2 leaf 0.99992 25/38 2277.19 3 2277.19 760.071 large

| Symbols: RBCL | 8.6 subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

R.VLAK(ac)ALR.L 1 1 leaf 0.95402 6/12 811.528 2 811.527 406.771 11

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | chrC:54958-56397 FORWARD

K.LSIFETGIK(ac)VVDLLAPYRR.G 1 1 pl 1 30/36 2231.27 3 2231.29 744.763 8.59

| Symbols: ATPB | chloroplast-encoded gene for beta subunit of ATP synthase | chrC:52660-54156 REVERSE

K.FFETFAAPFTK(ac)R.G 1 12 leaf, pl 1 17/22 1502.76 2 1502.74 752.385 8.75

| Symbols: PSAH2, PSAH-2, PSI-H | PSAH2 (PHOTOSYSTEM I SUBUNIT H2) | chr1:19454902-19455508 FORWARD

R.NGVK(ac)FGEAVWFK.A 1 2 leaf 0.74376 11/22 1422.73 2 1422.63 712.371 AB180, LHCB1.2 | CAB3 (CHLOROPHYLL A\B BINDING PROTEIN 3); chlorophyll binding | chr1:10472443-10473246 REVERSE

| Symbols: CAB3,8.59

K.MESQK(ac)PIFDLEKLDDEFVQK.L 1 20 cc 1 25/38 2480.22 3 2480.22 827.746 4.3

| Symbols: GSH2, GSHB | GSH2 (GLUTATHIONE SYNTHETASE 2); glutathione synthase | chr5:9668211-9670912 REVERSE

R.M(ox)K(ac)VMREMNKR.G 1 4 cc 0.95058 07/36 1379.68 3 1379.69 460.902 11

| Symbols: FZF | FZF; transcription factor | chr2:10401259-10402805 REVERSE

K.AIGVDAK(ac)K.A 1 7 leaf 0.86234 11/14 842.486 2 842.463 422.25 8.64

| Symbols: CSP41A | CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA); mRNA binding \ poly(U) binding | chr3:23327006-23328620 REVERSE

R.TEM(ox)LGK(ac)PIATM(ox)R.L 1 1 cc 0.99871 14/22 1420.71 3 1420.71 474.576 8.41

| Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr1:12890544-12892632 FORWARD

R.EM(ox)AKEVK(ac)HSRTGEVK.Q 1 2 leaf 0.59958 12/28 1785.91 2 1785.67 893.96 8.6

| Symbols: | calcium-binding mitochondrial protein-related | chr3:22098306-22101759 REVERSE

K.SEEEEISNNSEGFFK(ac)R.L 1 1 cc 0.9916 14/30 1942.86 3 1942.86 648.626 4.32

| Symbols: PI-4KBETA2, PI4KBETA2 | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2); binding \ inositol or phosphatidylinositol kinase\ phosphotransferase, alcohol group as acceptor | chr5:2899365-2905610 REVERSE

R.AK(ac)DLAEGLM(ox)K.K 1 1 leaf 0.39163 11/18 1132.58 2 1132.41 567.297 6.11

| Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr3:1920607-1922628 REVERSE

M.AEEIK(ac)NVPEQEVPKVATEESSAEVTDR.G 1 2 cc 0.99989 29/52 3025.48 3 3025.47 1009.5 4.22

| Symbols: ERD14 | ERD14 (EARLY RESPONSE TO DEHYDRATION 14); calcium ion binding | chr1:28587013-28587657 REVERSE

-.MLSSGK(ac)R.G 1 2 cc 0.99797 04/12 819.427 2 819.425 410.721 11

| Symbols: SAG21 | SAG21 (SENESCENCE-ASSOCIATED GENE 21) | chr4:1046414-1046746 REVERSE

M.AK(ac)EPVRVLVTGAAGQIGYALVPMIAR.G 1 14 cc 1 34/50 2721.53 3 2721.54 908.185 9.99

| Symbols: | malate dehydrogenase, cytosolic, putative | chr1:1189418-1191267 REVERSE

R.MMMTSGEAVK(ac)YK.S 1 1 nucl 0.99986 16/22 1416.64 2 1416.51 709.329 | AAC1

| Symbols: AAC1 8.25 (ADP\ATP CARRIER 1); ATP:ADP antiporter\ binding | chr3:2605706-2607030 REVERSE





K.AVGK(ac)VLPSLNGK.L 1 2 - 0.99994 16/22 1223.72 2 1223.73 612.869 10

| Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding \ catalytic\ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)\ glyceraldehyde-3-phosphate dehydrogenase | chr1:4608465-4610494 REVERSE

K.KVVISAPSK(ac)DAPMFVVGVNEHEYK.S 1 2 - 0.99999 28/46 2685.38 4 2685.37 672.353 6.76

| Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding \ catalytic\ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)\ glyceraldehyde-3-phosphate dehydrogenase | chr1:4608465-4610494 REVERSE

R.AASFNIIPSSTGAAK(ac)AVGK.V 1 2 - 1 23/36 1830.98 2 1830.98 916.499 10

| Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding \ catalytic\ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)\ glyceraldehyde-3-phosphate dehydrogenase | chr1:4608465-4610494 REVERSE

R.AASFNIIPSSTGAAK(ac)AVGK.V 1 2 - 0.99348 27/36 1830.98 3 1830.99 611.335 10

| Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding \ catalytic\ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)\ glyceraldehyde-3-phosphate dehydrogenase | chr1:4608465-4610494 REVERSE

R.LEK(ac)AATYDEIKK.A 1 2 - 0.99324 14/22 1449.77 2 1449.77 725.894 6.18

| Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding \ catalytic\ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)\ glyceraldehyde-3-phosphate dehydrogenase | chr1:4608465-4610494 REVERSE

R.LEK(ac)AATYDEIKK.A 1 2 - 0.79227 13/22 1449.77 2 1449.78 725.894 6.18

| Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding \ catalytic\ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)\ glyceraldehyde-3-phosphate dehydrogenase | chr1:4608465-4610494 REVERSE









K.M(ox)LAVLDSK(ac)VLWVNPDC(ca)GLK.T 1 1 leaf 0.90156 8/36 2215.14 2 2215.05 1108.58 5.71

| Symbols: ATMS3 | ATMS3 (methionine synthase 3); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase\ methionine synthase | chr5:7124397-7128353 REVERSE

K.TK(ac)VTVEVENQGEMAGK.H 1 1 mit 0.19584 11/30 1760.86 2 1760.87 881.438 4.78

| Symbols: | glycosyl hydrolase family 3 protein | chr1:29349796-29352868 REVERSE

R.GK(ac)GGK(ac)GLGK(ac)GGAK.R 1 7 leaf, nucl 0.92056 16/24 1239.69 2 1239.69 620.853 10.48

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD

R.GILAMDESNATC(ca)GK(ac)R.L 1 3 leaf 1 16/28 1663.77 2 1663.29 832.89 6.06

| Symbols: | fructose-bisphosphate aldolase, putative | chr4:18163714-18165659 REVERSE

K.IGLFGGAGVGK(ac)TVLIMELINNIAK.A 1 2 pl 1 35/46 2469.4 3 2470.54 824.141 8.59

| Symbols: ATPB | chloroplast-encoded gene for beta subunit of ATP synthase | chrC:52660-54156 REVERSE

R.TVFLK(ac)QLR.S 1 1 mit 0.43665 06/14 1045.63 2 1045.63 523.822 11

| Symbols: | scarecrow transcription factor family protein | chr3:18522570-18523802 FORWARD

R.HVMTNLGEK(ac)LSDEEVDEMIR.EPeptideAtlas 1 4 cc 0.9924 31/76 2386.11 3 2386.14 796.379 4.35

| Symbols: CAM6, ACAM-6 | CAM6 (CALMODULIN 6); calcium ion binding | chr5:7214740-7215950 REVERSE

mass spec

massdiff (Da) Detected -59) homologues

trimethylation (MH+:Acetylation Site

0.29 LTQ Velos no K46 I

GO:0005618DA Publication:501714811|PMID:15593128

-0.001 LTQ orbitrap XL no K6 AT2G28760.1

AT3G46440.1 I

GO:0009507EA AnalysisReference:501730133

0.002 LTQ orbitrap XL no K5 AT5G43330.1

AT1G04410.1 I

GO:0005739DA Publication:501724621|PMID:18385124, Publication:501712789|PMID:15276431, Publication:501718077|PMID:16287169, Publication:501712079|PMID:15028209, Publication:501714874|PMID:15539469, Publication:501736529|PMID:20197505Publication:501720626|PMID:17151019Publication:501714874|PMID:15539469

-0.0319 LTQ Velos no K362 I

GO:0005634DA Publication:501718489|PMID:16497658

0.0089 LTQ orbitrap XL no K614 I

GO:0009507EA AnalysisReference:501730133

0.0001 LTQ orbitrap XL no K984 I

GO:0000226MP Publication:501680712|PMID:11385579

-0.005 LTQ orbitrap XL no K133 I

GO:0005737DA Publication:501714452|PMID:15610358, Publication:501714452|PMID:15610358

-0.002 LTQ orbitrap XL no K643 I

GO:0009507EA AnalysisReference:501730133

0.008 LTQ orbitrap XL no K408 N

GO:0005575 D Communication:1345790

-0.0031 LTQ orbitrap XL no K5 AT4G26110.1

AT4G26110. AT5G56950.1 I

GO:0005886DA Publication:501720929|PMID:17317660, Publication:501729815|PMID:19228338, Publication:501729815|PMID:19228338

0.007 LTQ Orbitrap XL no K449

-0.011 LTQ Velos no K10 AT3G27360.1

AT1G09200.1 AT4G40030.1AT4G40040.1

AT4G40040.2

AT4G40030.2

AT4G40030.3 AT5G10400.1

AT5G10390.1 GO:0000786EA

AT5G65360.1 I AnalysisReference:501730468, AnalysisReference:501730468, AnalysisReference:501730133

0.455 LTQ Velos no K23, K29 AT3G46030.1

AT3G45980.1

AT5G59910.1 I

GO:0005634EA AnalysisReference:501730468

-0.006 LTQ Velos no K9, K13, K17 AT1G07820.1

AT1G07660.1 AT1G07820.2AT2G28740.1

AT3G45930.1

AT3G53730.1 AT5G59690.1

AT3G46320.1 AT5G59970.1 I

GO:0009507DA Publication:501724486|PMID:18431481, Publication:501720626|PMID:17151019

0.0081 LTQ Velos no K9, K13, K17 AT1G07820.1

AT1G07660.1 AT1G07820.2AT2G28740.1

AT3G45930.1

AT3G53730.1 AT5G59690.1

AT3G46320.1 AT5G59970.1 I

GO:0009507DA Publication:501724486|PMID:18431481, Publication:501720626|PMID:17151019

-0.1 LTQ Velos no K9, K13, K17 AT1G07820.1

AT1G07660.1 AT1G07820.2AT2G28740.1

AT3G45930.1

AT3G53730.1 AT5G59690.1

AT3G46320.1 AT5G59970.1 I

GO:0009507DA Publication:501724486|PMID:18431481, Publication:501720626|PMID:17151019

-0.34 LTQ Velos no K166 I

GO:0005794DA Publication:501718909|PMID:16618929

0.0028 LTQ orbitrap XL no K7 T

GO:0030036AS Publication:501681965|PMID:11826305

-0.008 LTQ orbitrap XL no K4 N

GO:0005575 D Communication:1345790

0.003 LTQ orbitrap XL no K7 I

GO:0005618DA Publication:501718077|PMID:16287169, Publication:501720929|PMID:17317660, Publication:501724486|PMID:18431481, Publication:501710623|PMID:12953116, Publication:501725189|PMID:18538804, Publication:501714224|PMID:15496452Publication:501710623|PMID:12953116

-0.2741 LTQ Velos no K507 I

GO:0005789EA AnalysisReference:501730468

0.012 LTQ orbitrap XL no K8 I

GO:0005886DA Publication:501722708|PMID:17644812

0.4759 LTQ Velos no K186 AT5G45340.2

AT5G45340.1 I

GO:0012505EA AnalysisReference:501730133

-0.0644 LTQ Velos no K205 I

GO:0012505EA AnalysisReference:501730133

LTQ Velos no

1.025* (non-monoisotopic peak) K184, K185 I

GO:0012505EA AnalysisReference:501730133

LTQ Velos no

1.895* (non-monoisotopic peak) K81 AT1G22840.1

AT1G22840.2 I

GO:0005886DA Publication:501720626|PMID:17151019

0.0031 LTQ orbitrap XL no K18 T

GO:0005829AS Publication:1192|PMID:10482686, Publication:501724486|PMID:18431481, Publication:501722708|PMID:17644812

0.0121 LTQ Velos no K223 AT5G35630.1

AT5G35630.2

AT5G35630.3 I

GO:0009507DA Publication:501712079|PMID:15028209

0.008 LTQ orbitrap XL no K18 I

GO:0005618DA Publication:501718077|PMID:16287169, Publication:501722708|PMID:17644812, Publication:1192|PMID:10482686, Publication:501724486|PMID:18431481

-0.043 LTQ Velos no K84 I

GO:0005886DA Publication:501722708|PMID:17644812, Publication:501725189|PMID:18538804, Publication:501711432|PMID:14617066, Communication:501714663

-0.028 LTQ Velos no K111 I

GO:0005886DA Publication:501722708|PMID:17644812, Publication:501725189|PMID:18538804, Publication:501711432|PMID:14617066, Communication:501714663

-0.263 LTQ Velos no K57 N

GO:0005575 D Communication:1345790

-0.0051 LTQ orbitrap XL no K6 I

GO:0005773DA Publication:501714874|PMID:15539469, Communication:501714663, Publication:501712339|PMID:15060130

0.0106 LTQ Velos no K280 N

GO:0005575 D Communication:1345790

LTQ Velos no

2.047* (non-monoisotopic peak) K157 N

GO:0003674 D Communication:501683652

0.0177 LTQ Orbitrap XL no K527

0.0002 LTQ orbitrap XL no K162 N

GO:0005575 D Communication:1345790

-0.0041 LTQ Velos no K804 I

GO:0009507EA AnalysisReference:501730133

0.0097 LTQ orbitrap XL no K228 I

GO:0005739DA Publication:501724032|PMID:18305213

0.0013 LTQ orbitrap XL no K247 AT1G17940.1

AT1G73390.1 AT1G73390.2AT1G73390.3

AT1G73390.4 N

GO:0005575 D Communication:1345790

LTQ Velos no

2.1891* (non-monoisotopic peak) K236 N

GO:0005575 D Communication:1345790

LTQ Velos no

0.9907* (non-monoisotopic peak) K94 AT2G37660.1

AT5G02240.1 I

GO:0009507DA Publication:501724486|PMID:18431481, Publication:501725189|PMID:18538804

0.011 LTQ Velos no K149 AT2G45990.1

AT2G45990.2

AT2G45990.3AT2G45990.4 I

GO:0009507DA Publication:501724486|PMID:18431481

-0.034 LTQ Velos no K4 N

GO:0005575 D TAIR

Communication:1345790 ########

-0.023 LTQ Velos no K149 N

GO:0005575 D Communication:1345790

-0.007 LTQ orbitrap XL no K7 AT1G63660.2

AT1G63660.1 IEA AnalysisReference:501730468

0.011 LTQ orbitrap XL no K7 I

GO:0005634DA Publication:501724611|PMID:18390592

0.0019 LTQ orbitrap XL no K10 I

GO:0005737EA AnalysisReference:501730468

0 LTQ orbitrap XL no K218 AT1G09300.1

AT1G09300.2 I

GO:0005739EA AnalysisReference:501730133

0.0124 LTQ Velos no K256 N

GO:0008150 D Communication:1345790

0.197 LTQ Velos no K565, K570 I

GO:0005634EA AnalysisReference:501730468

-0.002 LTQ Velos no K79 AT1G07930.1

AT1G07920.1 AT1G07940.1AT1G07940.2

AT1G07930.2

AT5G60390.1 AT5G60390.3

AT5G60390.2 I

GO:0005886DA Publication:501722708|PMID:17644812, Publication:501711651|PMID:14671022, Publication:501714224|PMID:15496452, Publication:501712079|PMID:15028209

0.036 LTQ Orbitrap XL no K187 AT1G07930.1

AT1G07920.1 AT1G07940.1AT1G07940.2

AT1G07930.2 AT5G60390.2

AT5G60390.1 AT5G60390.3

-0.1582 LTQ Velos no K21 AT3G55750.1

AT1G41880.1 I

GO:0022625DA Publication:501723363|PMID:17934214

-0.0356 LTQ Velos no K149 AT5G39740.1

AT3G25520.1 I

GO:0005634DA Publication:501705801|PMID:12711688, Publication:501712079|PMID:15028209, Publication:501720929|PMID:17317660, Publication:501705801|PMID:12711688, Publication:501712581|PMID:15215502

0.0066 LTQ orbitrap XL no K550 AT1G73430.2

AT1G73430.1 I

GO:0005801EA AnalysisReference:501730468, AnalysisReference:501730133

0.001 LTQ orbitrap XL no K8 I

GO:0016020DA Publication:501721401|PMID:17432890

-0.0129 LTQ Velos no K395 AT2G21330.1

AT2G21330.3

AT4G38970.1 I

GO:0048046DA Publication:501725189|PMID:18538804, Publication:501724486|PMID:18431481

-0.155 LTQ Velos no K314 AT1G12900.1, AT1G12900.2, AT1G12900.3, AT3G26650

-0.222 LTQ Velos no K146 AT1G56190.1

AT1G56190.2

AT3G12780.1 I

GO:0005739DA Publication:501711651|PMID:14671022, Publication:501724486|PMID:18431481

0.385 LTQ Velos no K288 AT1G56190.1

AT1G56190.2

AT3G12780.1 I

GO:0005739DA Publication:501711651|PMID:14671022, Publication:501724486|PMID:18431481

0.3959 LTQ Velos no K169 I

GO:0048046DA Publication:501725189|PMID:18538804, Publication:501724486|PMID:18431481, Publication:501711432|PMID:14617066, Publication:501714452|PMID:15610358, Publication:501711651|PMID:14671022, Publication:501718077|PMID:16287169

-0.1161 LTQ Velos no K167 AT2G39730.1

AT2G39730.2

AT2G39730.3 I

GO:0048046DA Publication:501725189|PMID:18538804, Publication:501712079|PMID:15028209, Publication:501711432|PMID:14617066, Publication:501718077|PMID:16287169

-0.174 LTQ Velos no K252 I

GO:0009507DA Publication:501724486|PMID:18431481

-0.1539 LTQ Velos no K146 I

GO:0009507DA Publication:501724486|PMID:18431481

-0.122 LTQ Velos no K252 I

GO:0009507DA Publication:501724486|PMID:18431481

0.0029 LTQ Velos no K463 I

GO:0009507DA Publication:501724486|PMID:18431481

-0.157 LTQ Velos no K21 I

GO:0009507DA Publication:501724486|PMID:18431481

LTQ Velos no

0.901* (non-monoisotopic peak) K14 I

GO:0009507DA Publication:501724486|PMID:18431481

-0.017 LTQ Velos no K175 I

GO:0009507DA Publication:501724486|PMID:18431481

0.021 LTQ Velos no K126 AT5G38430.1

AT1G67090.1 AT5G38420.1AT5G38410.1

AT5G38410.2

AT5G38410.3 I

GO:0009573SS Communication:501714663, Publication:501725189|PMID:18538804, Publication:501719172|PMID:16648217, Publication:501712079|PMID:15028209

0.0001 LTQ Orbitrap XL no K18

-0.009 LTQ Orbitrap XL no K21

0.0079 LTQ Orbitrap XL no K252

0.0083 LTQ Orbitrap XL no K252

0.0004 LTQ Orbitrap XL no K252

-0.0041 LTQ Orbitrap XL no K252

0.0001 LTQ Orbitrap XL no K252

0.0125 LTQ Orbitrap XL no K252

0.0071 LTQ Orbitrap XL no K175

0.0029 LTQ Orbitrap XL no K175

-0.0005 LTQ Orbitrap XL no K356

0.0036 LTQ Orbitrap XL no K356

-0.0039 LTQ Orbitrap XL no K146

-0.0006 LTQ Orbitrap XL no K316

0.0211 LTQ Velos no K154 I

GO:0009507DA Publication:501724486|PMID:18431481

-0.011 LTQ Velos no K99 AT3G16140.1

AT1G52230.1 I

GO:0009535DA Publication:501713005|PMID:15322131

-0.103 LTQ Velos no K125 AT1G29920.1

AT1G29910.1 AT1G29930.1AT2G05100.1

AT2G05070.1

AT2G34430.1 AT3G27690.1

AT2G34420.1 I

GO:0009535DA Publication:501711788|PMID:14729914, Publication:501712789|PMID:15276431

0.0001 LTQ orbitrap XL no K66 I

GO:0005829DA Publication:501714548|PMID:15610346, Publication:501714548|PMID:15610346

0.0042 LTQ orbitrap XL no K363 I

GO:0005622EA AnalysisReference:501730468

-0.023 LTQ Velos no K338 I

GO:0009507DA Publication:501724486|PMID:18431481

0.003 LTQ orbitrap XL no K176 N

GO:0005575 D Communication:1345790

-0.24 LTQ Velos no K327 AT3G59820.1

AT3G59820.2 I

GO:0005739DA Publication:501712789|PMID:15276431

0.0061 LTQ orbitrap XL no K293 I

GO:0005488EA AnalysisReference:501730468

-0.175 LTQ Velos no K12 AT3G06340.2

AT3G06340.1 N

GO:0005575 D Communication:501683652

-0.0041 LTQ orbitrap XL no K6 I

GO:0005886DA Publication:501720929|PMID:17317660, Publication:501712079|PMID:15028209

-0.0023 LTQ orbitrap XL no K6 N

GO:0003674 D Communication:501683652

0.008 LTQ orbitrap XL no K3 AT5G43330.1

AT1G04410.1 I

GO:0005886DA Publication:501721401|PMID:17432890, Publication:501728638|PMID:16207701, Publication:501711432|PMID:14617066, Publication:501722708|PMID:17644812, Publication:501714874|PMID:15539469, Publication:501725189|PMID:18538804Publication:501724486|PMID:18431481Publication:501720929|PMID:17317660

-0.139 LTQ Velos no K325 AT3G08580.1

AT3G08580.2

AT4G28390.1 AT5G13490.2

AT5G13490.1 I

GO:0005886DA Publication:501722708|PMID:17644812, Publication:501714224|PMID:15496452, Publication:501718077|PMID:16287169, Publication:501712079|PMID:15028209, Publication:501712789|PMID:15276431, Publication:501712581|PMID:15215502





0.012 LTQ Orbitrap XL no K219

-0.012 LTQ Orbitrap XL no K130

-0.0021 LTQ Orbitrap XL no K223

0.006 LTQ Orbitrap XL no K223

0 LTQ Orbitrap XL no K255

0.0021 LTQ Orbitrap XL no K255









-0.0927 LTQ Velos yes K773 AT5G20980.2

AT5G20980.1 I

GO:0009507DA Publication:501724486|PMID:18431481, Publication:501724483|PMID:18433157

0.007 LTQ Velos yes K673 I

GO:0048046DA Publication:501725189|PMID:18538804, Publication:501724486|PMID:18431481, Publication:501714811|PMID:15593128

-0.0069 LTQ Velos yes K6 AT1G07820.1

AT1G07660.1 AT1G07820.2

AT2G28740.1

AT3G45930.1

AT3G53730.1 AT5G59690.1

AT3G46320.1 AT5G59970.1 I

GO:0009507DA Publication:501724486|PMID:18431481, Publication:501720626|PMID:17151019

-0.481 LTQ Velos yes K81 AT4G38970.1

AT4G38970.2 I

GO:0009507DA Publication:501724486|PMID:18431481, Publication:501725189|PMID:18538804

1.1381 LTQ Velos yes K178 I

GO:0009507DA Publication:501724486|PMID:18431481

0.0037 LTQ Velos yes K266 GO:0003700SS

I ISS Publication:1345963|PMID:11118137

Publication:1345963|PMID:11118137

0.0291 LTQ orbitrap XL yes K116 N

GO:0005575 D Communication:1345790

Supplemental Table S2: List of all Arabidopsis lysine-acetylated peptides and proteins identified b



protein bin functional category

protein + number of homologues peptide

descriptioncellular component according to TAIR

At3g46440.1 10.1.05

At3g46440.1 +1 cell wall M.ASSDK170.11QTSPKPPP

cell wall.precursor synthesis.UXS UXS5 (UDP-Xyl synthase 5); catalytic encodes a pr

At1g03860.1 31.3

At1g03860.1 +1 cell.cycle mitochondrion, chloroplast, cell wall,

M.SFNK170.11VPNIPGAPA

ATPHB2 (PROHIBITIN 2) prohibitin 2 similar to AT

At3g46000.1 31.1

At3g46000.1 cell.organisation cytoplasm, nucleus

R.ELDGIQVELQATDPTEM1

ADF2 (ACTIN DEPOLYMERIZING FACTOR 2); actin

At3g54870.1 31.1

At3g54870.1 cell.organisation chloroplast of root hair 2); microtubu

MRH2 (morphogenesisK.K170.11LEGENAR.S

At2g35630.1 31.1

At2g35630.1 cell.organisation microtubule cytoskeleton organizatio

ORGANIZATION 1) Membe

MOR1 (MICROTUBULE K.M147.04IPYIIIALTDGK17

At5g37590.1 31.1

At5g37590.1 cell.organisation cellular_component_unknown

R.IAK170.11DVLHK.L

binding similar to SPY (SPINDLY), transferase, tra

At2g28620.1 31.1

At2g28620.1 cell.organisation chloroplast K.QLQDMENVMVSFVSAK1

kinesin motor protein-related similar to kinesin m

At4g26110.1 28.1

At4g26110.1 +1 plasma membrane, nucleus, cytoplasm

ASSEMBLY PROTEIN1;1);

DNA.synthesis/chromatin structureNAP1;1 (NUCLEOSOMEM.SNDK170.11DSFNVSDLT

At4g34490.1 28.99

At4g34490.1 DNA.unspecified actin cytoskeleton organization

-.MEEDLIK170.11RLEAAVT

ATCAP1 (CYCLASE ASSOCIATED PROTEIN 1) CYCLA

At5g17380.1 5.02

At5g17380.1 fermentation.PDC cellular_component_unknown

M.ADK170.11SETTPPSIDG

pyruvate decarboxylase family protein similar to

At3g52930.1 4.07

At3g52930.1 glycolysis.aldolase cell wall, plasma membrane, chloropla

aldolase, putative similar

fructose-bisphosphate M.SAFTSK170.11FADELIAN

At5g19440.1 26.11

At5g19440.1 misc.alcohol dehydrogenases plasma membrane

M.ANSGEGK170.11VVC16

cinnamyl-alcohol dehydrogenase, putative (CAD)

At3g17820.1 12.2.02

At3g17820.1 ATGSKB6 (Arabidopsis M.SLLSDLVNLNLTDATGK17

cytosol, chloroplast, plasma membran

N-metabolism.ammonia metabolism.glutamine synthase thaliana glutamine synthas

At5g37600.1 12.2.02

At5g37600.1 ATGSR1 (Arabidopsisplasma membrane, synthase

cell wall, M.SLVSDLINLNLSDSTDK17

N-metabolism.ammonia metabolism.glutamine synthasethaliana glutamine cytosol,

At4g23630.1 35.1

At4g23630.1 not assigned.no ontology vacuole, endoplasmic reticulum, plasm

M.AEEHK170.11HDESVIAP

BTI1 (VIRB2-INTERACTING PROTEIN 1) similar to

At1g44120.1 35.1.19

At1g44120.1 C2 domain-containing K.QDK170.11TVEGHLVGAL

cellular_component_unknown

not assigned.no ontology.C2 domain-containing protein protein / armadillo/beta-ca

At3g16890.1 35.1.5

At3g16890.1 pentatricopeptide (PPR) repeat-containing

mitochondrionK.K170.11GVVDEAIR.L

not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein protei

At1g73390.1 35.2

At1g73390.1 +4 not assigned.unknown cellular_component_unknown

K.ATLAVK170.11R.R

similar to unknown protein [Arabidopsis thaliana

At1g63660.1 23.1.2.031 nucleotide metabolism.synthesis.purine.GMP synthetase -.METPTMK170.11PDTVLIL

At1g63660.1 +1 cellular_component_unknown

GMP synthase (glutamine-hydrolyzing), putative /

At3g50960.1 29.1

At3g50960.1 protein.aa activation nucleus, protein [Arabidopsis thaliana

-.MDPDAVK170.11STLSNL

similar to unknowncytoplasm

At3g11710.1 29.1.06

At3g11710.1 lysyl-tRNA synthetase, putative / lysine--tRNA liga

protein.aa activation.lysine-tRNA ligase cytoplasm -.MEGAADQTTK170.11ALS

At1g09300.1 29.5

At1g09300.1 +1 protein.degradation mitochondrion protein similar

family

metallopeptidase M24 K.SPAELK170.11LMR.E to X

At1g73430.1 29.3.4.2 protein.targeting.secretory pathway.golgi

At1g73430.1 +1 cis-Golgi network, chloroplast

K.ASK170.11LIIKR.S

sec34-like family protein similar to Subunit of cis

At3g51310.1 29.3.4.3 protein.targeting.secretory pathway.vacuole membrane -.MIADDDEK170.11WLAAA

At3g51310.1 vacuolar protein sorting-associated protein 35 fam

At5g27380.1 21.2.2

At5g27380.1 GSH2 (GLUTATHIONE SYNTHETASE 2); glutathione

K.MESQK170.11PIFDLEKLD

redox.ascorbate and glutathione.glutathione cytosol, chloroplast

At2g24500.1 27.3.11

At2g24500.1 FZF; transcription factor Encodes a C2H2 zinc fing

intracellularR.M147.04K170.11VMREM

RNA.regulation of transcription.C2H2 zinc finger family

At1g35190.1 16.4.1

At1g35190.1 oxidoreductase, 2OG-Fe(II) oxygenase family prot

secondary metabolism.N misc.alkaloid-like R.TEM147.04LGK170.11PI

cellular_component_unknown

At5g09350.1 30.4.02

At5g09350.1 phosphatidylinositol 4-kinase, putative similar to

cellular_component_unknown

signalling.phosphinositides.phosphatidylinositol 4-kinase K.SEEEEISNNSEGFFK170.11

At1g76180.1 20.2.99

At1g76180.1 stress.abiotic.unspecified plasma membrane, chloroplast

M.AEEIK170.11NVPEQEVP

ERD14 (EARLY RESPONSE TO DEHYDRATION 14) E

At4g02380.2 20.2.99

At4g02380.2 stress.abiotic.unspecified cellular_component_unknown

-.MLSSGK170.11R.G

SAG21 (SENESCENCE-ASSOCIATED GENE 21) Enco

At1g04410.1 8.2.09

At1g04410.1 +1 malate dehydrogenase, cytosolic, putative strom

plasma membrane, chloroplast Identi

M.AK170.11EPVRVLVTGAA

TCA / org. transformation.other organic acid transformaitons.cyt MDH

Atcg00490.1 1.3.01

AtCg00490.1 chloroplast K.AGVK(ac)EYK.L

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1.3.01

AtCg00490.1 chloroplast K.EYK(ac)LTYYTPEYETK.D

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1.3.01

AtCg00490.1 chloroplast K.GHYLN(da)ATAGTC(ca)EE

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1.3.01

AtCg00490.1 chloroplast K.GHYLN(da)ATAGTC(ca)EE

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1.3.01

AtCg00490.1 chloroplast K.LTYYTPEYETK(ac)DTDILA

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1.3.01

AtCg00490.1 chloroplast K.LTYYTPEYETK(ac)DTDILA

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1.3.01

AtCg00490.1 chloroplast K.SQAETGEIK(ac)GHYLNAT

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1

AtCg00490.1.3.01 chloroplast K.SQAETGEIKGHYLN(da)AT

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1

AtCg00490.1.3.01 chloroplast K.YGRPLLGC(ca)TIK(ac)PKL

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1

AtCg00490.1.3.01 chloroplast K.YGRPLLGC(ca)TIKPK(ac)L

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1

AtCg00490.1.3.01 chloroplast R.DDYVEK(ac)DR.S

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1

AtCg00490.1.3.01 chloroplast R.ESTLGFVDLLRDDYVEK(ac

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1

AtCg00490.1.3.01 chloroplast R.IPPAYTK(ac)TFQGPPHGIQ

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

Atcg00490.1 1

AtCg00490.1.3.01 chloroplast R.VLAK(ac)ALR.L

PS.calvin cyle.rubisco large subunit large subunit of RUBISCO. Identical to Ribulose b

At1g07920.1 29.2.4

At1g07920.1 +7 protein.synthesis.elongation mitochondrion, plasma membrane, t

K.VGYNPDK170.11IPFVPIS

elongation factor 1-alpha / EF-1-alpha Identicalnu



At1g13440.1 +1 At1g13440 4.09 glyceraldehyde 3-phosphate dehydrogenase, cyto

cytosol

glycolysis.glyceraldehyde 3-phosphate dehydrogenase K.AVGK(ac)VLPSLNGK.L

At1g13440.1 +1 At1g13440 4.09 glyceraldehyde 3-phosphate dehydrogenase, cyto

cytosol

glycolysis.glyceraldehyde 3-phosphate dehydrogenase K.KVVISAPSK(ac)DAPMFVV

At1g13440.1 +2 At1g13440 4.09 glyceraldehyde 3-phosphate dehydrogenase, cyto

cytosol

glycolysis.glyceraldehyde 3-phosphate dehydrogenase R.AASFNIIPSSTGAAK(ac)AV

At1g13440.1 +2 At1g13440 4.09 glyceraldehyde 3-phosphate dehydrogenase, cyto

cytosol

glycolysis.glyceraldehyde 3-phosphate dehydrogenase R.AASFNIIPSSTGAAK(ac)AV

At1g13440.1 +2 At1g13440 4.09 glyceraldehyde 3-phosphate dehydrogenase, cyto

cytosol

glycolysis.glyceraldehyde 3-phosphate dehydrogenase R.LEK(ac)AATYDEIKK.A

At1g13440.1 +2 At1g13440 4.09 glyceraldehyde 3-phosphate dehydrogenase, cyto

cytosol

glycolysis.glyceraldehyde 3-phosphate dehydrogenase R.LEK(ac)AATYDEIKK.A

proteins identified by LC-MS/MS. (B) Peptides identified with the LTQ Orbitrap XL.



acetylated-K

tissue

Number of number of spectra iprob ions calc_mass z exp_mass MZratio

1 1 cc 0.999854 17/36 2018.046 3 2018.045 673.6893

1 1 cc 0.998205 17/36 1978.125 2 1978.127 990.0698

1 1 cc 0.999815 19/48 2848.381 3 2848.376 950.4676

1 1 cc 0.999537 10/14 957.489 2 957.487 479.7518

1 1 cc 0.999388 12/36 2122.079 2 2122.079 1062.047

1 1 cc 0.995301 09/14 964.571 2 964.579 483.2928

2 1 cc 0.865768 23/46 2809.4 3 2809.409 937.4739

1 8 cc 0.999999 37/40 2381.099 3 2381.096 794.7069

1 3 cc 0.998228 73/180 3327.746 4 3327.749 832.9437

1 5 cc 0.999926 18/36 1983.017 2 1983.009 992.5158

1 17 cc 0.999996 21/44 2413.216 2 2413.219 1207.615

1 9 cc 0.998766 24/46 2494.25 3 2494.262 832.4239

1 6 cc 0.999995 16/64 3589.868 3 3589.871 1197.63

1 1 cc 0.999522 18/64 3653.793 3 3653.801 1218.938

1 1 cc 0.999995 28/42 2511.226 3 2511.221 838.0826

1 4 cc 0.990098 07/26 1563.837 2 1563.837 782.9257

1 8 cc 0.998872 16/16 1027.566 2 1027.576 514.7904

1 2 cc 0.883272 04/12 799.4916 2 799.4929 400.7531

1 9 cc 1 22/50 3064.526 4 3064.519 767.1388

1 1 cc 1 26/46 2491.218 3 2491.229 831.4133

1 2 cc 1 32/72 3652.647 3 3652.649 1218.556

1 1 cc 0.99965 07/16 1085.59 2 1085.59 543.8024

1 1 cc 0.855639 04/14 969.6335 2 969.6401 485.824

1 4 cc 0.999998 15/68 1971.998 3 1971.999 658.3398

1 20 cc 1 25/38 2480.216 3 2480.216 827.7459

1 4 cc 0.950583 07/36 1379.684 3 1379.688 460.9018

1 1 cc 0.998709 14/22 1420.706 3 1420.709 474.5759

1 1 cc 0.991596 14/30 1942.856 3 1942.862 648.6259

1 2 cc 0.999892 29/52 3025.476 3 3025.472 1009.499

1 2 cc 0.99797 04/12 819.4272 2 819.4249 410.7209

1 14 cc 1 34/50 2721.534 3 2721.542 908.1853

1 1 leaf 0.997061 13/12 835.444 2 835.4441 418.7293

1 2 leaf 1 19/26 1868.874 2 1868.865 935.4443

1 7 leaf 0.996292 20/64 1992.903 3 1992.911 665.3084

1 1 leaf 0.979106 14/32 1992.903 2 1992.912 997.459

1 1 leaf 0.999992 10/38 2451.185 2 2451.185 1226.6

1 1 leaf 0.965198 20/38 2451.186 3 2451.182 818.0693

1 1 leaf 1 31/50 2935.382 3 2935.382 979.4679

1 5 leaf 0.999906 36/100 2936.365 3 2936.377 979.7955

1 1 leaf 1 19/36 2113.208 4 2113.215 529.3093

1 1 leaf 1 24/36 2113.208 3 2113.211 705.4099

1 1 leaf 0.999975 5/14 1080.472 2 1080.472 541.2435

1 1 leaf 0.998073 15/36 2311.133 2 2311.137 1156.574

1 2 leaf 0.999917 25/38 2277.192 3 2277.188 760.0712

1 1 leaf 0.954022 6/12 811.5279 2 811.5273 406.7712

1 3 leaf 0.999999 13/92 2751.321 3 2751.357 918.1144



1 2 - 0.999944 16/22 1223.723 2 1223.735 612.8688

1 2 - 0.999994 28/46 2685.382 4 2685.37 672.3528

1 2 - 1 23/36 1830.983 2 1830.981 916.4988

1 2 - 0.993476 27/36 1830.983 3 1830.989 611.335

1 2 - 0.993244 14/22 1449.773 2 1449.773 725.8938

1 2 - 0.792265 13/22 1449.773 2 1449.775 725.8938

L.



pI

protein_descr mass spec trimethylation (MH+:Acetylation Site

massdiff (Da) Detected -59)

UXS5; -0.001 LTQ orbitrap XLno K6

| Symbols: UXS5 |9.99 UDP-glucuronate decarboxylase\ catalytic | chr3:17089268-17091611 REVERSE

| Symbols: ATPHB2 10 0.002 LTQ orbitrap XL

no K5

| ATPHB2 (PROHIBITIN 2) | chr1:979611-981157 REVERSE

4.02 -0.005 LTQ orbitrap XL

no K133

| Symbols: ADF2 | ADF2 (ACTIN DEPOLYMERIZING FACTOR 2); actin binding | chr3:16907743-16908822 REVERSE

ARK1, -0.002 LTQ (MORPHOGENESIS OF ROOT HAIR 2); actin binding \ microtubule binding \ microtubul

| Symbols: MRH2,6.14 CAE1 | MRH2 orbitrap XL no K643

GEM1 MOR1 LTQ orbitrap XL no K984

| Symbols: MOR1,5.82 | 0.0001 (MICROTUBULE ORGANIZATION 1); microtubule binding | chr2:14966828-14980361 FORW

8.6 0.008 LTQ orbitrap XL

no

| Symbols: | binding | chr5:14927403-14932709 REVERSEK408

6.18 protein-related | chr2:12265167-12270020 REVERSE

no

| Symbols: | kinesin motor0.0089 LTQ orbitrap XL K614

4.17 -0.0031 LTQ orbitrap XL

no K5

| Symbols: NAP1;1, ATNAP1;1 | NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding | chr4:13232712-13235502 FO

5 CAP1 | ATCAP1 (ARABIDOPSISK7

| Symbols: ATCAP1, CAP 1,0.0028 LTQ orbitrap XLno THALIANA CYCLASE ASSOCIATED PROTEIN 1); actin binding | chr4:1

4.56 -0.008 LTQ orbitrap XL

no K4

| Symbols: | pyruvate decarboxylase family protein | chr5:5724920-5726720 REVERSE

5.79 0.003 LTQ orbitrap XL

no K7

| Symbols: | fructose-bisphosphate aldolase, putative | chr3:19627383-19628874 REVERSE

8.22 0.012 LTQ orbitrap XL

no K8

| Symbols: | cinnamyl-alcohol dehydrogenase, putative (CAD) | chr5:6556493-6558123 FORWARD

4.23 0.0031 LTQ ATGSKB6; no ion

| Symbols: ATGSKB6, GLN1.3, GLN1;3 |orbitrap XLcopper K18binding \ glutamate-ammonia ligase | chr3:6097503-6099408 F

4.04 GSR | ATGSR1; no copper K18

| Symbols: ATGSR1, GLN1;1,0.0081LTQ orbitrap XL ion binding \ glutamate-ammonia ligase | chr5:14933574-14935656 RE

BTI1 -0.0051 LTQ orbitrap XL

no

| Symbols: BTI1 | 4.53 (VIRB2-INTERACTING PROTEIN 1) |K6 chr4:12318070-12319574 FORWARD

6.75 0.0002 protein \ armadillo\beta-catenin repeat family protein | chr1:16780610-16787414 FORW

no

| Symbols: | C2 domain-containingLTQ orbitrap XL K162

| PPR40 0.0097 LTQ orbitrap XL

| Symbols: PPR40 6.07 no K228

(PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40) | chr3:5768401-5770380 REVERSE

11 0.0013 LTQ orbitrap XL

no K247

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cel

synthase-0.007 LTQ orbitrap XL putative \ glutamine amidotransferase, putative | chr1:23604127-23607

| Symbols: | GMP5.36 no

(glutamine-hydrolyzing), K7

| PLP3a (Phosducin-like protein 3 homolog); beta-tubulin binding | chr3:18938891-18940226 REVERSE

| Symbols: PLP3a 5.71 no

0.011 LTQ orbitrap XL K7

4.02 0.0019 LTQ orbitrap XL

no K10

| Symbols: ATKRS-1 | ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1); ATP binding \ aminoacyl-tRNA ligase\ ly

8.46 0 LTQ orbitrap XL

no K218

| Symbols: | metallopeptidase M24 family protein | chr1:3003981-3008131 FORWARD

11.17 0.0066 LTQ chr1:27604096-27610829 FORWARD

no

| Symbols: | sec34-like family protein |orbitrap XL K550

4.23 0.001 LTQ orbitrap C)

no K

| Symbols: VPS35C | VPS35C (VPS35 HOMOLOGXL | chr3:19044634-19049321 REVERSE

4.3 0.0001 LTQ orbitrap XL

no K66

| Symbols: GSH2, GSHB | GSH2 (GLUTATHIONE SYNTHETASE 2); glutathione synthase | chr5:9668211-9670912 REVERSE

11 0.0042 factor | chr2:10401259-10402805 REVERSE

no

| Symbols: FZF | FZF; transcription LTQ orbitrap XL K363

8.41 0.003 LTQ orbitrap XL

no protein

| Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase familyK176 | chr1:12890544-12892632 FORWARD

4.32 0.0061 | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2); binding \ inositol or phosph

| Symbols: PI-4KBETA2, PI4KBETA2LTQ orbitrap XLno K293

| ERD14 (EARLY LTQ orbitrap XL

| Symbols: ERD144.22 no K6

-0.0041 RESPONSE TO DEHYDRATION 14); calcium ion binding | chr1:28587013-28587657 REVERSE

| Symbols: SAG21 | 11 -0.0023 LTQ orbitrap XL

no K6

SAG21 (SENESCENCE-ASSOCIATED GENE 21) | chr4:1046414-1046746 REVERSE

9.99 0.008 LTQ orbitrapputative | chr1:1189418-1191267 REVERSE

| Symbols: | malate dehydrogenase, cytosolic,no XL K3

large 0.0001 RUBISCO. Protein

no K18

| Symbols: RBCL |8.54 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

large -0.009 RUBISCO. Protein

no K21

| Symbols: RBCL |4.79 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

large 0.0079 RUBISCO. Protein

no K252

| Symbols: RBCL |6.75 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

large 0.0083 RUBISCO. Protein

no K252

| Symbols: RBCL |6.75 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

large 0.0004 RUBISCO. Protein

no K252

| Symbols: RBCL |4.32 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

large -0.0041 RUBISCO. Protein

no K252

| Symbols: RBCL |4.32 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

large 0.0001 RUBISCO. Protein

no K252

| Symbols: RBCL |5.54 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

large 0.0125 RUBISCO. Protein

no K253

| Symbols: RBCL |5.54 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

| large 0.0071 RUBISCO. Protein

no K175

| Symbols: RBCL 10.03 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

| large 0.0029 RUBISCO. Protein

no K175

| Symbols: RBCL 10.03 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

large -0.0005 RUBISCO. Protein

no K356

| Symbols: RBCL |4.23 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

large 0.0036 RUBISCO. Protein

no K356

| Symbols: RBCL |4.23 subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

8.6 -0.0039 RUBISCO. Protein

no K146

| Symbols: RBCL | large subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

11 -0.0006 RUBISCO. Protein

no K316

| Symbols: RBCL | large subunit of LTQ Orbitrap XL is tyrosine-phosphorylated and its phosphorylation state is modulated in

4.32 0.036 LTQ Orbitrap XL

no K187

| Symbols: | elongation factor 1-alpha \ EF-1-alpha | chr1:2455559-2457001 FORWARD



GAPC2 |0.012 LTQ Orbitrap XL

| Symbols: GAPC-2, 10 no K219

GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding

6.76 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding

no

| Symbols: GAPC-2, GAPC2 -0.012 LTQ Orbitrap XL K130

GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding

| Symbols: GAPC-2, 10 no

-0.0021 LTQ Orbitrap XL K223

GAPC2 |0.006 LTQ Orbitrap XL

| Symbols: GAPC-2, 10 no K223

GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding

6.18 0 LTQ Orbitrap XL

no K255

| Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding

6.18 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding \ binding

no

| Symbols: GAPC-2, GAPC20.0021 LTQ Orbitrap XL K255

AT5G60390.3

AT5G60390.2

Supplemental Table S2: List of all Arabidopsis lysine-acetylated peptides and proteins identified b



protein bin

protein + number of homologues functional category

At2g28470.1 At2g28470.1 10.6.2 cell wall.degradation.mannan-xylose-arabinose-fucose

At1g53720.1 At1g53720.1 31.3 cell.cycle

At1g07660.1 At1g07660.1 +8 31.1 cell.organisation

At1g07660.1 At1g07660.1 +8 31.1 cell.organisation

At3g46030.1 At3g46030.1 +2 28.1.3 DNA.synthesis/chromatin structure.histone

At1g09200.1 At1g09200.1 +10 28.1.3 DNA.synthesis/chromatin structure.histone

At1g55130.1 At1g55130.1 28.99 DNA.unspecified

At3g23150.1 At3g23150.1 17.5.2 hormone metabolism.ethylene.signal transduction

At3g04290.1 At3g04290.1 26.28 misc.GDSL-motif lipase

At5g48375.1 At5g48375.1 26.03 misc.gluco-, galacto- and mannosidases

At5g35630.1 At5g35630.1 +2 12.2.02 N-metabolism.ammonia metabolism.glutamine synthase

At3g49890.1 At3g49890.1 35.1 not assigned.no ontology

At3g16640.1 At3g16640.1 35.1 not assigned.no ontology

At3g16640.1 At3g16640.1 35.1 not assigned.no ontology

At5g03430.1 At5g03430.1 35.1 not assigned.no ontology

At5g23680.1 At5g23680.1 35.1 not assigned.no ontology

At2g45990.1 At2g45990.1 +3 35.2 not assigned.unknown

At2g37660.1 At2g37660.1 +1 35.2 not assigned.unknown

At2g27280.1 At2g27280.1 35.2 not assigned.unknown

At3g16040.1 At3g16040.1 35.2 not assigned.unknown

At2g31320.1 At2g31320.1 29.4 protein.postranslational modification

At1g07920.1 At1g07920.1 +7 29.2.4 protein.synthesis.elongation

At1g41880.1 At1g41880.1 +1 29.2.2 protein.synthesis.misc ribososomal protein

At3g25520.1 At3g25520.1 +1 29.2.2 protein.synthesis.misc ribososomal protein

At2g21330.1 At2g21330.1 +2 1.3.06 PS.calvin cyle.aldolase

At1g12900.1 At1g12900.1 +3 1.3.04 PS.calvin cyle.GAP

At1g56190.1 At1g56190.1 +2 1.3.03 PS.calvin cyle.phosphoglycerate kinase

At1g56190.1 At1g56190.1 +2 1.3.03 PS.calvin cyle.phosphoglycerate kinase

At3g12780.1 At3g12780.1 1.3.03 PS.calvin cyle.phosphoglycerate kinase

At2g39730.1 At2g39730.1 +2 1.3.013 PS.calvin cyle.rubisco interacting

Atcg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit

Atcg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit

Atcg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit

Atcg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit

Atcg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit

Atcg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit

Atcg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit

At1g67090.1 At1g67090.1 +5 1.3.02 PS.calvin cyle.rubisco small subunit

Atcg00480.1 AtCg00480.1 1.1.04 PS.lightreaction.ATP synthase

At1g52230.1 At1g52230.1 +1 1.1.2.2 PS.lightreaction.photosystem I.PSI polypeptide subunits

At1g29910.1 At1g29910.1 +7 1.1.1.01 PS.lightreaction.photosystem II.LHC-II

At3g63140.1 At3g63140.1 27.3.99 RNA.regulation of transcription.unclassified

At3g59820.1 At3g59820.1 +1 30.3 signalling.calcium

At3g06340.1 At3g06340.1 +1 20.2.1 stress.abiotic.heat

At1g07660.1 At1g07660.1 +8 31.1 cell.organisation

At2g39730.1 At2g39730.1 +2 1.3.013 PS.calvin cyle.rubisco interacting

Atcg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit

Atcg00490.1 AtCg00490.1 1.3.01 PS.calvin cyle.rubisco large subunit

At1g67090.1 At1g67090.1 +5 1.3.02 PS.calvin cyle.rubisco small subunit

Atcg00480.1 AtCg00480.1 1.1.04 PS.lightreaction.ATP synthase

At1g52230.1 At1g52230.1 +1 1.1.2.2 PS.lightreaction.photosystem I.PSI polypeptide subunits

At1g07660.1 At1g07660.1 +8 31.1 cell.organisation

At5g45340.1 At5g45340.1 +1 26.10 misc.cytochrome P450

At1g22840.1 At1g22840.1 +1 9.6 mitochondrial electron transport / ATP synthesis.cytochrome c

At5g07650.1 At5g07650.1 35.1.20 not assigned.no ontology.formin homology 2 domain-containing protein

At2g36090.1 At2g36090.1 protein.degradation.ubiquitin.E3.SCF.FBOX

29.5.11.4.3.02

At1g07660.1 At1g07660.1 +8 31.1 cell.organisation

At1g07660.1 At1g07660.1 +8 31.1 cell.organisation

At1g07660.1 At1g07660.1 +8 31.1 cell.organisation

At1g09200.1 At1g09200.1 +10 28.1.3 DNA.synthesis/chromatin structure.histone

At3g16040.1 At3g16040.1 35.2 not assigned.unknown

At5g65540.1 At5g65540.1 35.2 not assigned.unknown

At1g07920.1 At1g07920.1 +7 29.2.4 protein.synthesis.elongation

At3g08580.1 At3g08580.1 +4 34.8 transport.metabolite transporters at the envelope membrane

ted peptides and proteins identified by LC-MS/MS. (C) Peptides identified with the LTQ Velos.



description peptide

cellular component according to TAIR database

cell wall R.K170.11VLISGSIHYPR.S

BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOS

nucleus peptidyl-prolyl cis-trans isomerase

ATCYP59/CYP59 (CYCLOPHILIN 59); RNA binding / nucleic acid binding / K.DC160.03VGGPSSK170.11FIVK.D Encodes a cycloph

chloroplast, Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thalian

histone H4 Identical to Histone H4 [Arabidopsis plasma membrane K.GLGK170.11GGAK170.11R.H

chloroplast, Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thalian

histone H4 Identical to Histone H4 [Arabidopsis plasma membrane K.GGK170.11GLGK170.11GGAK170.11R.H

nucleus K.SKAEK170.11APAEKK170.11PK.A

histone H2B, putative Identical to Histone H2B.7 (HTB11) [Arabidopsis Thaliana] (GB:Q9LZT0); Identical to Histone H2B.6 (HT

nucleosome, nucleus, chloroplast R.K170.11STGGK170.11APR.K

histone H3 Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabid

Golgi 70, putative [Arabidopsis thaliana]

endomembrane protein 70, putative similar to endomembrane proteinR.VGFKGSYEGSK170.11EK170.11K.Y(TAIR:AT5G25100

endoplasmic in ethylene perception in Arabidopsis similar to EIN4 (ETHYLENE INSENSITIV

ETR2 (ETHYLENE RESPONSE 2); receptor Involvedreticulum membrane K.RQEGSSLM147.04FK170.11VLK.E

endomembrane system to GDSL-motif lipase/hydrolase family protein [Arabi

ATLTL1/LTL1 (LI-TOLERANT LIPASE 1); carboxylic ester hydrolase similarR.K170.11LYELGAR.R

endomembrane hydrolyzing O-glycosyl compounds Is a myrosinase pseudogene that cod

TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3); hydrolase, system R.VK170.11K170.11WITINQLYTVPTR.G

chloroplast K.WPLGWPVGAFPGPQGPYYC160.03GVGADK170.11IW

GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammonia ligase chloroplastic glutamine synthetase Identical to Glutamine synth

cellular_component_unknown K.K170.11LTHGQIKVK.N

similar to hypothetical protein MtrDRAFT_AC147000g8v1 [Medicago truncatula] (GB:ABE85871.1)

plasma membrane, chloroplast, protein nucleus, cytoplasm

R.LQEQPTYDK170.11K.G

TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) Encodes aapoplast,homologous to TRANSCRIPTIONALLY CONTROLL

plasma membrane, chloroplast, protein nucleus, cytoplasm

K.LSEEDQAVFK170.11K.G

TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) Encodes aapoplast,homologous to TRANSCRIPTIONALLY CONTROLL

cellular_component_unknown K.K170.11LTSVGWSVQQTTVLR.N

phosphoadenosine phosphosulfate (PAPS) reductase family protein similar to Os01g0259600 [Oryza sativa (japonica cultivar-

cellular_component_unknown K.SSGGETAATTTTNTASAK170.11R.V

sterile alpha motif (SAM) domain-containing protein similar to sterile alpha motif (SAM) domain-containing protein [Arabido

chloroplast R.FYPGVSDALK170.11FASSK.I

similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80178.1); contains domain no description (G3D.3.4

chloroplast, At2g37660, chloroplast precursor [Arabidopsis Thaliana] (GB:O80934;GB:Q9

catalytic/ coenzyme binding Identical to Proteinapoplast R.TGQIVYK170.11K.L

cellular_component_unknown R.EEHK170.11SRYIQHIMKQAER.R

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27285.1); similar to Os04g0440000 [Oryza sativa (japonica cult

cellular_component_unknown M.SSK170.11QGGK170.11LK170.11PLK.Q

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15270.1); similar to conserved hypothetical protein [Medicago

nucleus R.VGNEK170.11IGGNK170.11VEEMSK.S

poly (ADP-ribose) polymerase, putative / NAD(+) ADP-ribosyltransferase, putative / poly(ADP-ribose) synthetase, putative Ide

mitochondrion, plasma membrane, R.GITIDIALWK170.11FETTK.Y

nucleolus, chloroplast

elongation factor 1-alpha / EF-1-alpha Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana]

cytosolic large 60S ribosomal protein L35a-4 (RPL35AD)

60S ribosomal protein L35a (RPL35aB) Identical toribosomal subunit R.GTVLGYK170.11R.S[Arabidopsis Thaliana] (GB:P5142

nucleus,plasma membrane, cytoplasm K.SNAYFK170.11R.Y

ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); structural constituent of ribosome Encodes ribosomal protein L5 that binds to 5

apoplast, chloroplast K.YTGEGESEEAKEGMFVK170.11GYTY.-

fructose-bisphosphate aldolase, putative similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4

chloroplast K.LNGIALRVPTPNVSVVDLVVQVSK170.11K.T

GAPA-2; glyceraldehyde-3-phosphate dehydrogenase similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A

mitochondrion, chloroplast K.GVTPK170.11FSLAPLVPR.L

phosphoglycerate kinase, putative similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2);

mitochondrion, chloroplast K.IGVIESLLEK170.11C160.03DILLLGGGMIFTFYK.A

phosphoglycerate kinase, putative similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2);

1); phosphoglycerate kinase nuclear phosphoglycerate kinase (PGK1)

R.LSELLGIEVTK170.11ADDC160.03IGPEVESLVASLPEGG

PGK1 (PHOSPHOGLYCERATE KINASEapoplast, chloroplast, nucleus, cytoplasm, mitochondrion, cell wall similar to PGK (PHO

chloroplast, apoplast, nucleus, cell wall

K.NFLTLPNIKVPLILGIWGGK170.11GQGK.S

RCA (RUBISCO ACTIVASE) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from a

to Ribulose K.SQAETGEIKGHYLNATAGTC160.03EEMIK170.11R.A

large subunit of RUBISCO. Identical chloroplast bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large s

to Ribulose R.IPPAYTK170.11TFQGPPHGIQVER.D

large subunit of RUBISCO. Identical chloroplast bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large s

to Ribulose K.GHYLNATAGTC160.03EEMIK170.11R.A

large subunit of RUBISCO. Identical chloroplast bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large s

to Ribulose K.WSPELAAAC160.03EVWK170.11EITFNFPTIDKLDGQE

large subunit of RUBISCO. Identical chloroplast bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large s

to Ribulose K.AGVKEYK170.11LTYYTPEYETK.D

large subunit of RUBISCO. Identical chloroplast bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large s

to Ribulose K.ASVGFK170.11AGVK.E

large subunit of RUBISCO. Identical chloroplast bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large s

to Ribulose K.YGRPLLGC160.03TIK170.11PK.L

large subunit of RUBISCO. Identical chloroplast bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large s

chloroplast, apoplast, thylakoid R.YWTMWK170.11LPLFGC160.03TDSAQVLK.E

ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) Identical to Ribulose bispho

chloroplast ATP synthase subunit beta (EC 3.6.3.14) (ATPase subu

chloroplast-encoded gene for beta subunit of ATP synthase Identical toK.LSIFETGIK170.11VVDLLAPYRR.G

chloroplast thylakoid membrane K.FFETFAAPFTK170.11R.G

photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) Identical to Photosystem I reaction

chloroplast chlorophyll binding member of Chlorophyll a/b-binding protein family Identic

CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3);thylakoid membrane, mitochondrionR.NGVK170.11FGEAVWFK.A

chloroplast, apoplast K.AIGVDAK170.11K.A

mRNA-binding protein, putative similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT1G09340.1); similar to

mitochondrion R.EM147.04AKEVK170.11HSRTGEVK.Q

calcium-binding mitochondrial protein-related similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:

cellular_component_unknown heat shock N-terminal domain-containing protein [Ar

DNAJ heat shock N-terminal domain-containing protein similar to DNAJR.AK170.11DLAEGLM147.04K.K

chloroplast, Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thalian

histone H4 Identical to Histone H4 [Arabidopsis plasma membrane K.GGK170.11GLGK170.11GGAK170.11R.H

chloroplast, apoplast, nucleus, cell wall

K.NFLTLPNIKVPLILGIWGGK170.11GQGK.S

RCA (RUBISCO ACTIVASE) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from a

to Ribulose K.ASVGFK170.11AGVK.E

large subunit of RUBISCO. Identical chloroplast bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large s

to Ribulose K.YGRPLLGC160.03TIK170.11PK.L

large subunit of RUBISCO. Identical chloroplast bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large s

chloroplast, apoplast, thylakoid R.YWTMWK170.11LPLFGC160.03TDSAQVLK.E

ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) Identical to Ribulose bispho

chloroplast ATP synthase subunit beta (EC 3.6.3.14) (ATPase subu

chloroplast-encoded gene for beta subunit of ATP synthase Identical toK.LSIFETGIK170.11VVDLLAPYRR.G

chloroplast thylakoid membrane K.FFETFAAPFTK170.11R.G

photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) Identical to Photosystem I reaction

chloroplast, Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thalian

histone H4 Identical to Histone H4 [Arabidopsis plasma membrane K.GGK170.11GLGK170.11GGAK170.11R.H

endomembrane system K.TYTFNVALISILGK170.11DEVYYREDLK.R

CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3); oxygen binding Encodes a protein with ABA 8'-hydroxy

mitochondrion K.ALYDYLLNPK170.11K.Y

ATCYTC-A/CYTC-1 (CYTOCHROME C-1); electron carrier Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, wh

chloroplast protein similar to formin homology 2 domain-contai

formin homology 2 domain-containing protein / FH2 domain-containingK.NK170.11DAKEAEM147.04EK.T

biological_process_unknown R.SVM147.04EGK170.11R.V

F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G27310.1); similar to Os11g0155100 [Ory

chloroplast, Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thalian

histone H4 Identical to Histone H4 [Arabidopsis plasma membrane K.GLGK170.11GGAK170.11R.H

chloroplast, Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thalian

histone H4 Identical to Histone H4 [Arabidopsis plasma membrane K.GGK170.11GLGK170.11GGAK170.11R.H

chloroplast, Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thalian

histone H4 Identical to Histone H4 [Arabidopsis plasma membrane K.GGK170.11GLGK170.11GGAK.R

nucleosome, nucleus, chloroplast R.K170.11STGGK170.11APR.K

histone H3 Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabid

cellular_component_unknown M.SSK170.11QGGK170.11LK170.11PLK.Q

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15270.1); similar to conserved hypothetical protein [Medicago

cellular_component_unknown K.SLSK170.11PSFTSGTR.G

similar to PFT1 (PHYTOCHROME AND FLOWERING TIME 1) [Arabidopsis thaliana] (TAIR:AT1G25540.2); similar to hypothetica

mitochondrion, plasma membrane, R.GITIDIALWK170.11FETTK.Y

nucleolus, chloroplast

elongation factor 1-alpha / EF-1-alpha Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana]

plasma membrane, nucleolus, cell wall, mitochondrion, chloroplast, vacuole

ADP/ATP carrier Identical to

AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrialR.MMMTSGEAVK170.11YK.S ADP,ATP carrier protein

TQ Velos.



Number of acetylated-K number of spectra tissue iprob ions calc_mass

1 1 leaf 0.98727 21/22 1410.798

1 3 leaf 0.59121 12/24 1434.717

2 10 leaf 0.99999 14/16 926.529

3 18 leaf, pl, mit 0.98631 16/22 1210.677

2 3 leaf 0.99998 21/24 1494.843

2 6 leaf 0.99962 13/16 984.536

2 1 leaf 0.95065 14/26 1626.825

1 1 leaf 0.47593 12/24 1579.839

1 1 leaf 0.45502 4/14 990.5498

2 1 leaf 0.82615 21/30 2043.153

1 20 leaf 1 36/56 3229.556

1 2 leaf 0.61558 10/18 1192.73

1 7 leaf 1 14/18 1290.648

1 3 leaf 1 17/20 1334.673

1 40 leaf 0.96768 10/30 1844.0156

1 1 leaf 1 19/36 1852.878

1 3 leaf 0.99999 21/28 1657.834

1 1 leaf 0.61979 16/14 977.5547

1 1 leaf 0.49467 23/32 2224.119

3 5 leaf 0.99889 22/22 1395.81

2 1 leaf 0.41285 11/30 1801.888

1 15 leaf 1 19/28 1776.967

1 2 leaf 0.99012 8/14 934.5236

1 7 leaf 0.75118 5/12 926.461

1 16 leaf 1 29/40 2416.041

1 1 leaf 0.95186 27/48 2686.573

1 1 leaf 1 17/26 1522.887

1 2 leaf 1 34/50 2970.583

1 1 leaf 1 41/76 4175.192

1 3 pl, leaf 1 39/46 2604.514

1 2 leaf 0.99945 29/50 2935.382

1 3 leaf 1 28/38 2277.192

1 3 leaf 1 26/32 1991.92

1 15 leaf 0.84623 26/56 3435.635

1 3 leaf 0.79119 24/34 2224.095

1 1 pl 0.98221 14/18 1004.564

1 3 pl, leaf 1 27/24 1543.855

1 8 leaf, pl 0.96444 23/38 2485.217

1 1 pl 1 30/36 2231.267

1 12 leaf, pl 1 17/22 1502.756

1 2 leaf 0.74376 11/22 1422.728

1 7 leaf 0.86234 11/14 842.486

1 2 leaf 0.59958 12/28 1785.905

1 1 leaf 0.39163 11/18 1132.58

3 18 leaf, pl, mit 0.98631 16/22 1210.677

1 3 pl, leaf 1 39/46 2604.514

1 1 pl 0.98221 14/18 1004.564

1 3 pl, leaf 1 27/24 1543.855

1 8 leaf, pl 0.96444 23/38 2485.217

1 1 pl 1 30/36 2231.267

1 12 leaf, pl 1 17/22 1502.756

3 18 leaf, pl, mit 0.98631 16/22 1210.677

1 1 mit 0.65505 21/46 2891.495

1 2 mit 1 15/20 1378.75

1 1 mit 0.21436 09/20 1349.6133

1 1 mit 0.92702 05/12 863.4171

2 10 leaf 0.99999 14/16 926.529

3 18 leaf, pl, mit 0.98631 16/22 1210.677

2 1 leaf 0.99538 16/20 1012.565

2 6 leaf 0.99962 13/16 984.536

3 5 leaf 0.99889 22/22 1395.81

1 1 leaf 0.84275 14/22 1308.668

1 15 leaf 1 19/28 1776.967

1 1 leaf 0.99986 16/22 1416.644

z exp_mass MZratio protein_descr pI massdiff (Da)

3 1411.08801 471.2733 9.99 0.29

| Symbols: BGAL8 | BGAL8 (beta-galactosidase 8); beta-galactosidase\ catalytic\ catio

2 1434.68506 718.3658 8.2 -0.0319

| Symbols: ATCYP59, CYP59 | CYP59 (CYCLOPHILIN 59); RNA binding \ nucleic acid bind

2 926.52301 464.2718 11.17

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD -0.006

2 1210.68506 606.3458 11.26

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD 0.0081

3 1495.29797 499.2883 9.82 0.455

| Symbols: HTB11 | HTB11; DNA binding | chr3:16913614-16914051 REVERSE

2 984.525024 493.2753 11.17

| Symbols: | histone H3 | chr1:2971722-2972132 REVERSE -0.011

2 1626.48499 814.4198 9.4 -0.34

| Symbols: | endomembrane protein 70, putative | chr1:20569654-20572266 FORWA

2 1579.56494 790.9268 9.99 -0.2741

| Symbols: ETR2 | ETR2 (ethylene response 2); ethylene binding \ glycogen synthase k

2 990.4854 496.2822 8.59 -0.0644

| Symbols: ATLTL1, LTL1 | LTL1 (LI-TOLERANT LIPASE 1); carboxylesterase\ hydrolase,

3 2044.17798 682.0583 10.29 1.025

| Symbols: TGG3, BGLU39 | TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3); hydrolase, hydr

3 3229.56812 1077.5259 8.18 0.0121

| Symbols: GS2, GLN2, ATGSL1 | GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammon

2 1192.46704 597.3723 10.3 -0.263

| Symbols: | unknown protein | chr3:18499296-18500501 FORWARD

2 1290.60498 646.3313 6.07 -0.043

| Symbols: TCTP | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) | chr3:56

2 1334.64502 668.3438 4.68 -0.028

| Symbols: TCTP | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) | chr3:56

2 1844.0262 923.0151 11

| Symbols: | phosphoadenosine phosphosulfate (PAPS) 0.0106reductase family protein | chr

2 1854.92505 927.4463 8.46 2.047

| Symbols: | sterile alpha motif (SAM) domain-containing protein | chr5:7985573-798

2 1657.84497 829.9243 8.5 0.011

| Symbols: | unknown protein | chr2:18919402-18921043 FORWARD

2 978.5454 489.7846 9.7 0.9907

| Symbols: | binding \ catalytic\ coenzyme binding | chr2:15795481-15796977 REVER

3 2226.30811 742.3803 8.6 2.1891

| Symbols: | unknown protein | chr2:11673826-11675613 REVERSE

3 1395.776 466.2773 10.48 -0.034

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_p

2 1802.08496 901.9513 6.2 0.197

| Symbols: PARP2, ATPARP2 | PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2); DNA bindin

2 1776.96497 889.4908 \ EF-1-alpha | chr1:2455559-2457001 FORWAR

| Symbols: | elongation factor 1-alpha 6.07 -0.002

2 934.3654 468.2691 9.99 -0.1582

| Symbols: | 60S ribosomal protein L35a (RPL35aB) | chr1:15651585-15652427 REVER

2 926.4254 464.2378 9.99 -0.0356

| Symbols: ATL5, PGY3, OLI5, RPL5A | ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); 5S

3 2416.02808 806.3543 4.33 -0.0129

| Symbols: | fructose-bisphosphate aldolase, putative | chr2:9128416-9130152 REVER

3 2686.41797 896.5316 9.99 -0.155

| Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SU

2 1522.66504 762.4508 11 -0.222

| Symbols: | phosphoglycerate kinase, putative | chr1:21028403-21030454 FORWARD

3 2970.96802 991.2016 putative | chr1:21028403-21030454 FORWARD

| Symbols: | phosphoglycerate kinase, 4.68 0.385

3 4175.58789 1392.7379 3.94

| Symbols: PGK1 | PGK1 (PHOSPHOGLYCERATE KINASE 0.3959 1); phosphoglycerate kinase |

3 2604.39795 869.1786 10.3 -0.1161

| Symbols: RCA | RCA (RUBISCO ACTIVASE); ADP binding \ ATP binding \ enzyme regul

3 2935.20801 979.4679 5.54 -0.174

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and it

3 2277.03809 760.0713 8.6 tyrosine-phosphorylated and it

| Symbols: RBCL | large subunit of RUBISCO. Protein is -0.1539

3 1991.79797 664.9806 6.75 -0.122

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and it

3 3435.63794 1146.2189 4.25 0.0029

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and it

3 2223.93799 742.3723 6.27 -0.157

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and it

2 1005.46503 503.2893 10 0.901

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and it

3 1543.83801 515.6256 9.79 -0.017

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and it

3 2485.23804 829.4129 8.18

| Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE 0.021 CARBOXYLASE SMALL CHAIN

3 2231.28809 744.7629 8.59 0.0211

| Symbols: ATPB | chloroplast-encoded gene for beta subunit of ATP synthase | chrC:5

2 1502.745 752.3853 8.75 -0.011

| Symbols: PSAH2, PSAH-2, PSI-H | PSAH2 (PHOTOSYSTEM I SUBUNIT H2) | chr1:19454

2 1422.625 712.3713 8.59 -0.103

| Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL A\B BINDING PROTEIN 3); ch

2 842.463013 422.2503 8.64 -0.023

| Symbols: CSP41A | CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KD

2 1785.66504 893.9598 8.6 -0.24

| Symbols: | calcium-binding mitochondrial protein-related | chr3:22098306-2210175

2 1132.40503 567.2973 6.11 -0.175

| Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr3:1920607-1

2 1210.68506 606.3458 11.26

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD 0.0081

3 2604.39795 869.1786 10.3 -0.1161

| Symbols: RCA | RCA (RUBISCO ACTIVASE); ADP binding \ ATP binding \ enzyme regul

2 1005.46503 503.2893 10 0.901

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and it

3 1543.83801 515.6256 9.79 -0.017

| Symbols: RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and it

3 2485.23804 829.4129 8.18

| Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE 0.021 CARBOXYLASE SMALL CHAIN

3 2231.28809 744.7629 8.59 0.0211

| Symbols: ATPB | chloroplast-encoded gene for beta subunit of ATP synthase | chrC:5

2 1502.745 752.3853 8.75 -0.011

| Symbols: PSAH2, PSAH-2, PSI-H | PSAH2 (PHOTOSYSTEM I SUBUNIT H2) | chr1:19454

2 1210.68506 606.3458 11.26

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD 0.0081

4 2891.97095 723.881 4.78 0.4759

| Symbols: CYP707A3 | CYP707A3; (+)-abscisic acid 8'-hydroxylase\ oxygen binding | c

2 1380.64502 690.3823 (CYTOCHROME C-1); electron carrier\ heme bin

| Symbols: CYTC-1, ATCYTC-A | CYTC-1 8.47 1.895

2 1349.6092 675.8139 4.87 -0.0041

| Symbols: | formin homology 2 domain-containing protein \ FH2 domain-containing p

2 863.4295 432.7158 8.46 0.0124

| Symbols: | F-box family protein | chr2:15158631-15159584 FORWARD

2 926.52301 464.2718 11.17

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD -0.006

2 1210.68506 606.3458 11.26

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD 0.0081

2 1012.46503 507.2898 10.3

| Symbols: | histone H4 | chr1:2369212-2369523 FORWARD -0.1

2 984.525024 493.2753 11.17

| Symbols: | histone H3 | chr1:2971722-2972132 REVERSE -0.011

3 1395.776 466.2773 10.48 -0.034

| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_p

2 1308.64502 655.3413 11 -0.023

| Symbols: | unknown protein | chr5:26195710-26198112 FORWARD

2 1776.96497 889.4908 \ EF-1-alpha | chr1:2455559-2457001 FORWAR

| Symbols: | elongation factor 1-alpha 6.07 -0.002

2 1416.505 709.3293 8.25 -0.139

| Symbols: AAC1 | AAC1 (ADP\ATP CARRIER 1); ATP:ADP antiporter\ binding | chr3:26

mass spec trimethylation (MH+: -59) Detected Acetylation Site

LTQ Velos no K46

LTQ Velos no K362

LTQ Velos no K6, K9, K13, K18

LTQ Velos no K6, K9, K13, K17

LTQ Velos no K23, K29

LTQ Velos no K10

LTQ Velos no K166

LTQ Velos no K507

LTQ Velos no K205

LTQ Velos no K184, K185

LTQ Velos no K223

LTQ Velos no K57

LTQ Velos no K84

LTQ Velos no K111

LTQ Velos no K280

LTQ Velos no K157

LTQ Velos no K149

LTQ Velos no K94

LTQ Velos no K236

LTQ Velos no K4

LTQ Velos no K565, K570

LTQ Velos no K79

LTQ Velos no K21

LTQ Velos no K149

LTQ Velos no K395

LTQ Velos no K314

LTQ Velos no K146

LTQ Velos no K288

LTQ Velos no K169

LTQ Velos no K167

LTQ Velos no K252

LTQ Velos no K146

LTQ Velos no K252

LTQ Velos no K463

LTQ Velos no K21

LTQ Velos no K14

LTQ Velos no K175

LTQ Velos no K126

LTQ Velos no K154

LTQ Velos no K99

LTQ Velos no K125

LTQ Velos no K338

LTQ Velos no K327

LTQ Velos no K12

LTQ Velos no K6, K9, K13, K17

LTQ Velos no K167

LTQ Velos no K14

LTQ Velos no K175

LTQ Velos no K126

LTQ Velos no K154

LTQ Velos no K99

LTQ Velos no K6, K9, K13, K17

LTQ Velos no K186

LTQ Velos no K81

LTQ Velos no K804

LTQ Velos no K256

LTQ Velos no K6, K9, K13, K18

LTQ Velos no K6, K9, K13, K17

LTQ Velos no K6, K9, K13, K19

LTQ Velos no K10

LTQ Velos no K4

LTQ Velos no K149

LTQ Velos no K79

LTQ Velos no K325

Supplemental Table S3. Lysine acetylation is found in proteins from diverse functional

overrepresented functional categories (Usadel et al., 2006)).



BIN Binname Count not found

1 PS 10 64

1.1 PS.lightreaction 3 71

1.1.1.1 PS.lightreaction.photosystem II.LHC-II 1 73

1.1.2.2 PS.lightreaction.photosystem I.PSI polypeptide subunits 1 73

1.1.4 PS.lightreaction.ATP synthase 1 73

1.1.2 PS.lightreaction.photosystem I 1 73

1.1.1 PS.lightreaction.photosystem II 1 73

1.3.4 PS.calvin cyle.GAP 1 73

1.3.2 PS.calvin cyle.rubisco small subunit 1 73

1.3.6 PS.calvin cyle.aldolase 1 73

1.3.3 PS.calvin cyle.phosphoglycerate kinase 2 72

1.3 PS.calvin cyle 7 67

1.3.13 PS.calvin cyle.rubisco interacting 1 73

1.3.1 PS.calvin cyle.rubisco large subunit 1 73

2 major CHO metabolism 1 73

2.1 major CHO metabolism.synthesis 1 73

2.1.2 major CHO metabolism.synthesis.starch 1 73

2.1.2.5 major CHO metabolism.synthesis.starch.transporter 1 73

4 glycolysis 2 72

4.1 glycolysis.phosphoglycerate kinase 1 73

4.7 glycolysis.aldolase 1 73

5 fermentation 1 73

5.2 fermentation.PDC 1 73

8 TCA / org. transformation 1 73

8.2.9 TCA / org. transformation.other organic acid transformaitons.cyt MDH 1 73

8.2 TCA / org. transformation.other organic acid transformations 1 73

9 mitochondrial electron transport / ATP synthesis 1 73

9.6 mitochondrial electron transport / ATP synthesis.cytochrome c 1 73

10 cell wall 2 72

10.1 cell wall.precursor synthesis 1 73

10.1.5 cell wall.precursor synthesis.UXS 1 73

10.6 cell wall.degradation 1 73

10.6.2 cell wall.degradation.mannan-xylose-arabinose-fucose 1 73

12 N-metabolism 3 71

12.2.2 N-metabolism.ammonia metabolism.glutamine synthase 3 71

12.2 N-metabolism.ammonia metabolism 3 71

16 secondary metabolism 1 73

16.4 secondary metabolism.N misc 1 73

16.4.1 secondary metabolism.N misc.alkaloid-like 1 73

17 hormone metabolism 1 73

17.5.2 hormone metabolism.ethylene.signal transduction 1 73

17.5 hormone metabolism.ethylene 1 73

20 stress 3 71

20.2 stress.abiotic 3 71

20.2.1 stress.abiotic.heat 1 73

20.2.99 stress.abiotic.unspecified 2 72

21 redox.regulation 1 73

21.2 redox.ascorbate and glutathione 1 73

21.2.2 redox.ascorbate and glutathione.glutathione 1 73

23 nucleotide metabolism 1 73

23.1 nucleotide metabolism.synthesis 1 73

23.1.2.31 nucleotide metabolism.synthesis.purine.GMP synthetase 1 73

23.1.2 nucleotide metabolism.synthesis.purine 1 73

26 misc 5 69

26.1 misc.cytochrome P450 1 73

26.11 misc.alcohol dehydrogenases 1 73

26.28 misc.GDSL-motif lipase 1 73

26.3 misc.gluco-, galacto- and mannosidases 2 72

27 RNA 2 72

27.3.99 RNA.regulation of transcription.unclassified 1 73

27.3.11 RNA.regulation of transcription.C2H2 zinc finger family 1 73

27.3 RNA.regulation of transcription 2 72

28 DNA 6 68

28.1 DNA.synthesis/chromatin structure 4 70

28.1.3 DNA.synthesis/chromatin structure.histone 3 71

28.99 DNA.unspecified 2 72

29 protein 11 63

29.1 protein.aa activation 2 72

29.1.6 protein.aa activation.lysine-tRNA ligase 1 73

29.2.4 protein.synthesis.elongation 1 73

29.2 protein.synthesis 3 71

29.2.2 protein.synthesis.misc ribososomal protein 2 72

29.3 protein.targeting 2 72

29.3.4.2 protein.targeting.secretory pathway.golgi 1 73

29.3.4.3 protein.targeting.secretory pathway.vacuole 1 73

29.3.4 protein.targeting.secretory pathway 2 72

29.4 protein.postranslational modification 2 72

29.4.1.59 protein.postranslational modification.kinase.receptor like cytoplasmatic kinase IX 1 73

29.4.1 protein.postranslational modification.kinase 1 73

29.5.11 protein.degradation.ubiquitin 1 73

29.5.11.4.3 protein.degradation.ubiquitin.E3.SCF 1 73

29.5.11.4 protein.degradation.ubiquitin.E3 1 73

29.5.11.4.3.2protein.degradation.ubiquitin.E3.SCF.FBOX 1 73

29.5 protein.degradation 2 72

30 signalling 2 72

30.3 signalling.calcium 1 73

30.4 signalling.phosphinositides 1 73

30.4.2 signalling.phosphinositides.phosphatidylinositol 4-kinase 1 73

31 cell 8 66

31.1 cell.organisation 6 68

31.3 cell.cycle 2 72

33 development 1 73

33.2 development.late embryogenesis abundant 1 73

34 transport 1 73

34.8 transport.metabolite transporters at the envelope membrane 1 73

35 not assigned 16 59

35.1.20 not assigned.no ontology.formin homology 2 domain-containing protein 1 73

35.1.19 not assigned.no ontology.C2 domain-containing protein 1 73

35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein 1 73

35.1.3 not assigned.no ontology.armadillo/beta-catenin repeat family protein 1 73

35.1 not assigned.no ontology 9 65

35.2 not assigned.unknown 6 68

diverse functional categories (Pageman statistical analysis of





Background Contingency p value Ratio Fraction found

203 10 193 64 32539 3.35E-11 21.839 0.049

142 3 139 71 32593 0.004112 9.366 0.021

14 1 13 73 32719 0.031127 31.666 0.071

18 1 17 73 32715 0.039843 24.629 0.056

13 1 12 73 32720 0.028936 34.102 0.077

26 1 25 73 32707 0.057045 17.051 0.038

60 1 59 73 32673 0.126822 7.389 0.017

4 1 3 73 32729 0.008993 110.831 0.250

4 1 3 73 32729 0.008993 110.831 0.250

6 1 5 73 32727 0.013459 73.887 0.167

2 2 0 72 32732 5.02E-06 443.324 1.000

36 7 29 67 32703 1.76E-12 86.202 0.194

6 1 5 73 32727 0.013459 73.887 0.167

1 1 0 73 32732 0.002256 443.324 1.000

103 1 102 73 32630 0.207815 4.304 0.010

34 1 33 73 32699 0.073942 13.039 0.029

25 1 24 73 32708 0.054911 17.733 0.040

4 1 3 73 32729 0.008993 110.831 0.250

68 2 66 72 32666 0.010386 13.039 0.029

2 1 1 73 32731 0.004506 221.662 0.500

5 1 4 73 32728 0.011228 88.665 0.200

14 1 13 73 32719 0.031127 31.666 0.071

5 1 4 73 32728 0.011228 88.665 0.200

76 1 75 73 32657 0.157871 5.833 0.013

6 1 5 73 32727 0.013459 73.887 0.167

24 1 23 73 32709 0.052773 18.472 0.042

139 1 138 73 32594 0.269888 3.189 0.007

14 1 13 73 32719 0.031127 31.666 0.071

543 2 541 72 32191 0.347087 1.633 0.004

46 1 45 73 32687 0.09873 9.637 0.022

6 1 5 73 32727 0.013459 73.887 0.167

175 1 174 73 32558 0.327157 2.533 0.006

34 1 33 73 32699 0.073942 13.039 0.029

25 3 22 71 32710 2.45E-05 53.199 0.120

7 3 4 71 32728 3.83E-07 189.996 0.429

12 3 9 71 32723 2.39E-06 110.831 0.250

467 1 466 73 32266 1 0.949 0.002

67 1 66 73 32666 0.140543 6.617 0.015

61 1 60 73 32672 0.128795 7.268 0.016

638 1 637 73 32095 1 0.695 0.002

43 1 42 73 32690 0.092595 10.310 0.023

114 1 113 73 32619 0.227315 3.889 0.009

993 3 990 71 31742 0.491585 1.339 0.003

471 3 468 71 32264 0.090595 2.824 0.006

216 1 215 73 32517 0.386997 2.052 0.005

123 2 121 72 32611 0.031601 7.209 0.016

196 1 195 73 32537 0.358493 2.262 0.005

57 1 56 73 32676 0.120876 7.778 0.018

12 1 11 73 32721 0.026739 36.944 0.083

160 1 159 73 32573 0.303855 2.771 0.006

35 1 34 73 32698 0.076033 12.666 0.029

1 1 0 73 32732 0.002256 443.324 1.000

17 1 16 73 32716 0.037671 26.078 0.059

1517 5 1512 69 31220 0.394887 1.461 0.003

244 1 243 73 32489 0.424814 1.817 0.004

17 1 16 73 32716 0.037671 26.078 0.059

90 1 89 73 32643 0.184144 4.926 0.011

100 2 98 72 32634 0.021549 8.866 0.020

3045 2 3043 72 29689 0.045107 0.291 0.001

384 1 383 73 32349 0.581998 1.154 0.003

141 1 140 73 32592 0.273192 3.144 0.007

2554 2 2552 72 30180 0.125972 0.347 0.001

3071 6 3065 68 29667 0.843313 0.866 0.002

2753 4 2749 70 29983 0.52573 0.644 0.001

54 3 51 71 32681 0.000252 24.629 0.056

245 2 243 72 32489 0.105867 3.619 0.008

4465 11 4454 63 28278 0.733959 1.092 0.002

93 2 91 72 32641 0.018813 9.534 0.022

6 1 5 73 32727 0.013459 73.887 0.167

35 1 34 73 32698 0.076033 12.666 0.029

1251 3 1248 71 31484 0.760869 1.063 0.002

1017 2 1015 72 31717 1 0.872 0.002

240 2 238 72 32494 0.102297 3.694 0.008

14 1 13 73 32719 0.031127 31.666 0.071

29 1 28 73 32704 0.063417 15.287 0.034

116 2 114 72 32618 0.028376 7.644 0.017

735 2 733 72 31999 0.682782 1.206 0.003

20 1 19 73 32713 0.044172 22.166 0.050

127 1 126 73 32606 0.24975 3.491 0.008

1486 1 1485 73 31247 0.264209 0.298 0.001

755 1 754 73 31978 1 0.587 0.001

1239 1 1238 73 31494 0.531676 0.358 0.001

718 1 717 73 32015 1 0.617 0.001

2044 2 2042 72 30690 0.329548 0.434 0.001

1268 2 1266 72 31466 1 0.699 0.002

228 1 227 73 32505 0.403496 1.944 0.004

53 1 52 73 32680 0.112886 8.365 0.019

3 1 2 73 32730 0.006752 147.775 0.333

720 8 712 66 32020 0.000218 4.926 0.011

397 6 391 68 32341 0.00028 6.700 0.015

111 2 109 72 32623 0.02616 7.988 0.018

626 1 625 73 32107 1 0.708 0.002

27 1 26 73 32706 0.059173 16.419 0.037

978 1 977 73 31755 0.728125 0.453 0.001

31 1 30 73 32702 0.067641 14.301 0.032

11835 15 11820 59 20912 0.004937 0.562 0.001

19 1 18 73 32714 0.04201 23.333 0.053

46 1 45 73 32687 0.09873 9.637 0.022

456 1 455 73 32277 1 0.972 0.002

28 1 27 73 32705 0.061297 15.833 0.036

4149 9 4140 65 28592 1 0.962 0.002

7686 6 7680 68 25052 0.000867 0.346 0.001